his_emr_api_lab 0.0.6 → 0.0.7

checksums.yaml

@@ -1,7 +1,7 @@
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+  data.tar.gz: '064059e7286ba44485e1707c2be889126776e15125732859bc41c682d4784002'
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data/app/services/lab/lims/migrator.rb

@@ -142,9 +142,10 @@ module Lab
       MIGRATION_REJECTIONS_CSV_PATH = LIMS_LOG_PATH.join('migration-rejections.csv')
 
       def self.export_rejections(rejections)
-        headers = ['Accession number', 'NHID', 'First name', 'Last name', 'Reason']
+        headers = ['doc_id', 'Accession number', 'NHID', 'First name', 'Last name', 'Reason']
         rows = (rejections || []).map do |rejection|
           [
+            rejection.order[:_id],
             rejection.order[:tracking_number],
             rejection.order[:patient][:id],
             rejection.order[:patient][:first_name],
@@ -159,9 +160,10 @@ module Lab
       MIGRATION_FAILURES_CSV_PATH = LIMS_LOG_PATH.join('migration-failures.csv')
 
       def self.export_failures
-        headers = ['Accession number', 'NHID', 'Reason', 'Difference']
+        headers = ['doc_id', 'Accession number', 'NHID', 'Reason', 'Difference']
         rows = Lab::LimsFailedImport.all.map do |failure|
           [
+            failure.lims_id,
             failure.tracking_number,
             failure.patient_nhid,
             failure.reason,

data/app/services/lab/lims/order_dto.rb

@@ -30,9 +30,9 @@ module Lab
 
       # Translates a LIMS specimen name to an OpenMRS concept_id
       def specimen_type_id
-        lims_specimen_name = self['sample_type']
+        lims_specimen_name = self['sample_type']&.strip&.downcase
 
-        if %w[specimen_not_collected not_assigned].include?(lims_specimen_name)
+        if %w[specimen_not_collected not_assigned not_specified].include?(lims_specimen_name)
           return ConceptName.select(:concept_id).find_by_name!('Unknown').concept_id
         end
 
@@ -53,6 +53,8 @@ module Lab
 
       # Extract requesting clinician name from LIMS
       def requesting_clinician
+        return 'Unknown' unless self['who_order_test']
+
         # TODO: Extend requesting clinician to an obs tree having extra parameters
         # like phone number and ID to closely match the lims user.
         first_name = self['who_order_test']['first_name'] || ''

data/lib/lab/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Lab
-  VERSION = '0.0.6'
+  VERSION = '0.0.7'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: his_emr_api_lab
 version: !ruby/object:Gem::Version
-  version: 0.0.6
+  version: 0.0.7
 platform: ruby
 authors:
 - Elizabeth Glaser Pediatric Foundation Malawi
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-04-23 00:00:00.000000000 Z
+date: 2021-04-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: couchrest