his_emr_api_lab 0.0.2 → 0.0.7

data/lib/generators/lab/install/templates/swagger.yaml

@@ -175,6 +175,12 @@ paths:
         description: 'Filter by sample status: ordered, drawn'
         schema:
           type: string
+      - name: end_date
+        in: query
+        required: false
+        description: Select all results before this date
+        schema:
+          type: date
       responses:
         '200':
           description: Success
@@ -396,6 +402,32 @@ paths:
       responses:
         '204':
           description: No Content
+  "/api/v1/lab/reasons_for_test":
+    get:
+      summary: Reasons for test
+      description: Retrieve default reasons for test concept set
+      tags:
+      - Concepts
+      security:
+      - api_key: []
+      responses:
+        '200':
+          description: Success
+          content:
+            application/json:
+              schema:
+                type: array
+                items:
+                  type: object
+                  properties:
+                    concept_id:
+                      type: integer
+                    name:
+                      type: string
+                      example: Routine
+                  required:
+                  - concept_id
+                  - name
   "/api/v1/lab/tests/{test_id}/results":
     post:
       summary: Add results to order

data/lib/lab/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Lab
-  VERSION = '0.0.2'
+  VERSION = '0.0.7'
 end

data/lib/tasks/loaders/data/tests.csv

@@ -35,6 +35,7 @@ Blood,"Liver Function Tests","2019-11-19 14:05:31"
 Blood,"Renal Function Test","2019-11-19 14:05:31"
 Blood,Lipogram,"2019-11-19 14:05:31"
 Blood,FBC,"2019-11-19 14:05:31"
+Blood,"FBS","2021-04-11 00:00:00"
 Blood,Electrolytes,"2019-11-19 14:05:31"
 Blood,Enzymes,"2019-11-19 14:05:31"
 Blood,Glucose,"2019-11-19 14:05:31"
@@ -42,6 +43,22 @@ Blood,"Prothrombin Time","2019-11-19 14:05:31"
 Blood,APTT,"2019-11-19 14:05:31"
 Blood,INR,"2019-11-19 14:05:31"
 Blood,ESR,"2019-11-19 14:05:31"
+Blood,"D/Coombs","2021-04-11 00:00:00"
+Blood,"creat","2021-04-11 00:00:00"
+Blood,"Widal","2021-04-11 00:00:00"
+Blood,"AAFB (3rd)","2021-04-11 00:00:00"
+Blood,"Urine micro","2021-04-11 00:00:00"
+Blood,"AAFB (1st)","2021-04-11 00:00:00"
+Blood,ASOT,"2021-04-11 00:00:00"
+Blood,"Blood C/S","2021-04-11 00:00:00"
+Blood,"Cryptococcal Ag","2021-04-11 00:00:00"
+Blood,"I/Ink","2021-04-11 00:00:00"
+Blood,"Prot& Sugar","2021-04-11 00:00:00"
+Blood,C_S,"2021-04-11 00:00:00"
+Blood,hep,"2021-04-11 00:00:00"
+Blood,"Cryptococcal Antigen","2021-04-11 00:00:00"
+Blood,Resistance,"2021-04-11 00:00:00"
+Blood,Sickle,"2021-04-11 00:00:00"
 Blood,"Sickling Test","2019-11-19 14:05:31"
 Blood,"Manual Differential & Cell Morphology","2019-11-19 14:05:31"
 Blood,"Pancreatic Function Test","2019-11-19 14:05:31"
@@ -69,8 +86,12 @@ Blood,HbA1c,"2019-11-19 14:05:31"
 Blood,Microalbumin,"2019-11-19 14:05:31"
 Blood,Microprotein,"2019-11-19 14:05:31"
 Blood,"Von Willebrand Factor","2019-11-19 14:05:31"
+Blood,"HIV_viral_load","2021-04-13 00:00:00"
+Blood,"Viral laod","2021-04-11 00:00:00"
 Blood,"Viral Load","2019-11-19 14:05:31"
 Blood,"Urine Lam","2019-11-19 14:05:31"
+Blood,"Protein and Sugar","2021-04-16"
+Blood,"White cell count","2021-04-16"
 Blood,Urea,"2019-11-19 14:05:31"
 Blood,Creatinine,"2019-11-19 14:05:31"
 Blood,ALT,"2019-11-19 14:05:31"

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: his_emr_api_lab
 version: !ruby/object:Gem::Version
-  version: 0.0.2
+  version: 0.0.7
 platform: ruby
 authors:
 - Elizabeth Glaser Pediatric Foundation Malawi
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-04-07 00:00:00.000000000 Z
+date: 2021-04-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: couchrest
@@ -24,6 +24,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 2.0.0
+- !ruby/object:Gem::Dependency
+  name: parallel
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.20.1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.20.1
 - !ruby/object:Gem::Dependency
   name: rails
   requirement: !ruby/object:Gem::Requirement
@@ -211,6 +225,7 @@ files:
 - README.md
 - Rakefile
 - app/controllers/lab/application_controller.rb
+- app/controllers/lab/labels_controller.rb
 - app/controllers/lab/orders_controller.rb
 - app/controllers/lab/reasons_for_test_controller.rb
 - app/controllers/lab/results_controller.rb
@@ -233,8 +248,11 @@ files:
 - app/serializers/lab/test_serializer.rb
 - app/services/lab/accession_number_service.rb
 - app/services/lab/concepts_service.rb
+- app/services/lab/labelling_service/order_label.rb
 - app/services/lab/lims/api.rb
 - app/services/lab/lims/config.rb
+- app/services/lab/lims/exceptions.rb
+- app/services/lab/lims/migrator.rb
 - app/services/lab/lims/order_dto.rb
 - app/services/lab/lims/order_serializer.rb
 - app/services/lab/lims/utils.rb
@@ -250,6 +268,7 @@ files:
 - db/migrate/20210323080140_change_lims_id_to_string_in_lims_order_mapping.rb
 - db/migrate/20210326195504_add_order_revision_to_lims_order_mapping.rb
 - db/migrate/20210407071728_create_lab_lims_failed_imports.rb
+- lib/auto12epl.rb
 - lib/couch_bum/couch_bum.rb
 - lib/generators/lab/install/USAGE
 - lib/generators/lab/install/install_generator.rb