helma-opentox-ruby-api-wrapper 0.1.3 → 0.1.4

data/VERSION

@@ -1 +1 @@
-0.1.3
+0.1.4

data/lib/helper.rb

@@ -0,0 +1,26 @@
+helpers do
+
+	# Authentification
+  def protected!
+    response['WWW-Authenticate'] = %(Basic realm="Testing HTTP Auth") and \
+    throw(:halt, [401, "Not authorized\n"]) and \
+    return unless authorized?
+  end
+
+  def authorized?
+    @auth ||=  Rack::Auth::Basic::Request.new(request.env)
+    @auth.provided? && @auth.basic? && @auth.credentials && @auth.credentials == ['api', API_KEY]
+  end
+
+	    
+=begin
+	def xml(object)
+		builder do |xml| 
+			xml.instruct!
+			object.to_xml
+		end
+	end
+=end
+
+end
+

data/lib/opentox-ruby-api-wrapper.rb

@@ -1,11 +1,12 @@
-require 'rest_client'
-require 'crack/xml'
-require 'spork'
+[ 'rest_client', 'crack/xml', 'spork', 'helper' ].each do |lib|
+	require lib
+end
 
 ENV['OPENTOX_COMPOUND'] = 'http://webservices.in-silico.ch/compound/v0/' unless ENV['OPENTOX_COMPOUND']
 ENV['OPENTOX_FEATURE']  = 'http://webservices.in-silico.ch/feature/v0/'  unless ENV['OPENTOX_FEATURE']
 ENV['OPENTOX_DATASET']  = 'http://webservices.in-silico.ch/dataset/v0/'  unless ENV['OPENTOX_DATASET']
 ENV['OPENTOX_FMINER']   = 'http://webservices.in-silico.ch/fminer/v0/'   unless ENV['OPENTOX_FMINER']
+ENV['OPENTOX_LAZAR']   = 'http://webservices.in-silico.ch/lazar/v0/'     unless ENV['OPENTOX_LAZAR']
 
 module OpenTox
 
@@ -86,7 +87,6 @@ module OpenTox
 				@uri = params[:uri].to_s
 			elsif params[:name] 
 				@uri = RestClient.post ENV['OPENTOX_DATASET'], :name => params[:name]
-				RestClient.delete @uri + '/associations'
 			end
 		end
 
@@ -140,4 +140,18 @@ module OpenTox
 
 	end
 
+	class Lazar < OpenTox
+
+		# Create a new prediction model from a dataset
+		def initialize(training_dataset)
+			@uri = RestClient.post ENV['OPENTOX_LAZAR'] + 'models/' , :dataset_uri => training_dataset.uri
+		end
+
+		# Predict a compound
+		def predict(compound)
+			RestClient.post @uri, :compound_uri => compound.uri
+		end
+
+	end
+
 end

data/opentox-ruby-api-wrapper.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = %q{opentox-ruby-api-wrapper}
-  s.version = "0.1.3"
+  s.version = "0.1.4"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Christoph Helma"]
-  s.date = %q{2009-08-14}
+  s.date = %q{2009-08-15}
   s.description = %q{Ruby wrapper for the OpenTox REST API (http://www.opentox.org)}
   s.email = %q{helma@in-silico.ch}
   s.extra_rdoc_files = [
@@ -23,6 +23,7 @@ Gem::Specification.new do |s|
      "README.rdoc",
      "Rakefile",
      "VERSION",
+     "lib/helper.rb",
      "lib/opentox-ruby-api-wrapper.rb",
      "lib/spork.rb",
      "opentox-ruby-api-wrapper.gemspec",

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification 
 name: helma-opentox-ruby-api-wrapper
 version: !ruby/object:Gem::Version 
-  version: 0.1.3
+  version: 0.1.4
 platform: ruby
 authors: 
 - Christoph Helma
@@ -9,7 +9,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2009-08-14 00:00:00 -07:00
+date: 2009-08-15 00:00:00 -07:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -58,6 +58,7 @@ files:
 - README.rdoc
 - Rakefile
 - VERSION
+- lib/helper.rb
 - lib/opentox-ruby-api-wrapper.rb
 - lib/spork.rb
 - opentox-ruby-api-wrapper.gemspec