health-data-standards 4.0.4 → 4.0.5
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checksums.yaml
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@@ -1,7 +1,7 @@
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---
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metadata.gz:
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data.tar.gz:
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metadata.gz: dfe3222e8e37edd35ddbfbb2530b22766cad152b
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data.tar.gz: 2b9e2d715ae07b07c4c8829d1bb3a9092057ad2b
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metadata.gz:
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metadata.gz: a3d40208beb0b18a7cc7ace4d92c847c4612e6b87e276e7fdfc47eb8e83c1194a529090a32878860a8db733636aa7a701a5cea4ba56a355ec1f808a242e12e5b
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data.tar.gz: da2df8cad8ee160802363d28da11fa1520d044354163e17102e64a8d8fcdff8a1cfdbe4a08ea29b4146509ff252e32e95e2faf9d7d6d06b72189328f225a2066
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data/Rakefile
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@@ -34,7 +34,8 @@ module HealthDataStandards
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'2.16.840.1.113883.1.11.78' => "HL7 Observation Interpretation",
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'2.16.840.1.113883.3.221.5' => "Source of Payment Typology",
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'2.16.840.1.113883.6.13' => 'CDT',
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'2.16.840.1.113883.18.2' => 'AdministrativeSex'
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'2.16.840.1.113883.18.2' => 'AdministrativeSex',
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'2.16.840.1.113883.5.1' => 'AdministrativeGender'
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}
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CODE_SYSTEM_ALIASES = {
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@@ -73,4 +74,3 @@ module HealthDataStandards
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end
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end
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end
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@@ -32,24 +32,17 @@ module HQMF2
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# Returns the population descriptions and criteria found in this document
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def extract_populations_and_criteria
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has_observation = extract_observations
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document_populations =
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HQMF2::Document::NAMESPACES)
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# Sort the populations based on the id/extension, since the populations may be out of order; there doesn't seem to
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# be any other way that order is indicated in the HQMF
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document_populations = document_populations.sort_by do |pop|
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pop.at_xpath('cda:id/@extension', HQMF2::Document::NAMESPACES).try(:value)
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end
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document_populations = get_document_populations
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number_of_populations = document_populations.length
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document_populations.each_with_index do |population_def, population_index|
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population = {}
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handle_base_populations(population_def, population)
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id_def = population_def
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population
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id_def = get_id_def(population_def)
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add_id_to_population(population_def, id_def, population, population_index)
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add_title_to_population(population_def, population)
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add_observ_to_population(has_observation, population)
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population['OBSERV'] = 'OBSERV' if has_observation
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@populations << population
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handle_stratifications(population_def, number_of_populations, population, id_def, population_index)
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end
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@@ -59,6 +52,37 @@ module HQMF2
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[@populations, @population_criteria]
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end
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def get_document_populations
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document_populations = @doc.xpath('cda:QualityMeasureDocument/cda:component/cda:populationCriteriaSection',
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HQMF2::Document::NAMESPACES)
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# Sort the populations based on the id/extension, since the populations may be out of order; there doesn't seem to
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# be any other way that order is indicated in the HQMF
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document_populations = document_populations.sort_by do |pop|
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pop.at_xpath('cda:id/@extension', HQMF2::Document::NAMESPACES).try(:value)
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end
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end
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def get_id_def(population_def)
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population_def.at_xpath('cda:id/@extension', HQMF2::Document::NAMESPACES)
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end
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def get_title_def(population_def)
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title_def = population_def.at_xpath('cda:title/@value', HQMF2::Document::NAMESPACES)
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end
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def add_id_to_population(population_def, id_def, population, population_index)
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population['id'] = id_def ? id_def.value : "Population#{population_index}"
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end
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def add_title_to_population(population_def, population)
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title_def = get_title_def(population_def)
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population['title'] = title_def ? title_def.value : "Population #{population_index}"
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end
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def add_observ_to_population(has_observation, population)
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population['OBSERV'] = 'OBSERV' if has_observation
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end
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# Extracts the measure observations, will return true if one exists
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def extract_observations
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has_observation = false
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@@ -120,5 +120,45 @@ module HQMF2CQL
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end
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end
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# Returns the population descriptions and criteria found in this document
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def extract_populations_and_criteria
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has_observation = extract_observations
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document_populations = get_document_populations
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number_of_populations = document_populations.length
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document_populations.each_with_index do |population_def, population_index|
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population = {}
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handle_base_populations(population_def, population)
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id_def = get_id_def(population_def)
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add_id_to_population(population_def, id_def, population, population_index)
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add_title_to_population(population_def, population)
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add_observ_to_population(has_observation, population)
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add_supplemental_data_elements_to_population(population_def, population)
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@populations << population
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handle_stratifications(population_def, number_of_populations, population, id_def, population_index)
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end
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# Push in the stratification populations after the unstratified populations
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@populations.concat(@stratifications)
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[@populations, @population_criteria]
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end
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def add_supplemental_data_elements_to_population(population_def, population)
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begin
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supplemental_data_elements_def = population_def.xpath('cda:component/cql-ext:supplementalDataElement')
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rescue Nokogiri::XML::XPath::SyntaxError
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# Older fixtures without SDEs don't have the cql-ext namespace
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return
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end
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supplemental_data_elements = []
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supplemental_data_elements_def.each do |sde_def|
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cql_definition_name = sde_def.at_xpath('cda:precondition/cda:criteriaReference/cda:id').attribute('extension').to_s.match(/"([^"]*)"/)[1]
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supplemental_data_elements << cql_definition_name
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end
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population['supplemental_data_elements'] = supplemental_data_elements
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end
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end
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: health-data-standards
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version: !ruby/object:Gem::Version
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version: 4.0.
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version: 4.0.5
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platform: ruby
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authors:
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- The MITRE Corporation
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2018-05-
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date: 2018-05-31 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rest-client
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version: '0'
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requirements: []
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rubyforge_project:
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rubygems_version: 2.6.
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rubygems_version: 2.6.14
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signing_key:
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specification_version: 4
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summary: A library for generating and consuming various healthcare related formats.
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