health-data-standards 3.1.1 → 3.2.0

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Files changed (83) hide show
  1. data/Rakefile +2 -8
  2. data/lib/health-data-standards.rb +4 -2
  3. data/lib/health-data-standards/export/hdata/metadata.rb +2 -2
  4. data/lib/health-data-standards/export/helper/cat1_view_helper.rb +7 -101
  5. data/lib/health-data-standards/export/helper/html_view_helper.rb +2 -0
  6. data/lib/health-data-standards/export/helper/scooped_view_helper.rb +109 -0
  7. data/lib/health-data-standards/export/html.rb +2 -2
  8. data/lib/health-data-standards/export/qrda/entry_template_resolver.rb +29 -5
  9. data/lib/health-data-standards/export/view_helper.rb +2 -2
  10. data/lib/health-data-standards/import/bundle/importer.rb +8 -2
  11. data/lib/health-data-standards/import/cda/result_importer.rb +5 -0
  12. data/lib/health-data-standards/import/hdata/metadata_importer.rb +1 -1
  13. data/lib/health-data-standards/models/condition.rb +5 -0
  14. data/lib/health-data-standards/models/cqm/measure.rb +118 -1
  15. data/lib/health-data-standards/models/cqm/patient_cache.rb +60 -0
  16. data/lib/health-data-standards/models/encounter.rb +11 -0
  17. data/lib/health-data-standards/models/entry.rb +8 -0
  18. data/lib/health-data-standards/models/facility.rb +5 -0
  19. data/lib/health-data-standards/models/fulfillment_history.rb +4 -0
  20. data/lib/health-data-standards/models/guarantor.rb +5 -0
  21. data/lib/health-data-standards/models/insurance_provider.rb +10 -0
  22. data/lib/health-data-standards/models/medical_equipment.rb +5 -0
  23. data/lib/health-data-standards/models/medication.rb +11 -0
  24. data/lib/health-data-standards/models/order_information.rb +6 -0
  25. data/lib/health-data-standards/models/procedure.rb +5 -0
  26. data/lib/health-data-standards/models/provider_performance.rb +5 -0
  27. data/lib/health-data-standards/models/record.rb +16 -0
  28. data/lib/health-data-standards/models/thing_with_codes.rb +35 -5
  29. data/lib/health-data-standards/util/code_system_helper.rb +12 -3
  30. data/lib/hqmf-model/data_criteria.json +2 -2
  31. data/lib/hqmf-model/document.rb +9 -2
  32. data/lib/hqmf-parser/1.0/document.rb +6 -1
  33. data/templates/_author.hdata.erb +3 -0
  34. data/templates/_pedigree.hdata.erb +16 -15
  35. data/templates/cat1/_2.16.840.1.113883.10.20.22.4.85.cat1.erb +1 -0
  36. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.1.cat1.erb +1 -1
  37. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.103.cat1.erb +1 -1
  38. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.105.cat1.erb +1 -1
  39. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.11.cat1.erb +1 -1
  40. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.12.cat1.erb +1 -1
  41. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.13.cat1.erb +1 -1
  42. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.14.cat1.erb +1 -1
  43. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.17.cat1.erb +1 -1
  44. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.18.cat1.erb +2 -2
  45. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.2.cat1.erb +2 -1
  46. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.20.cat1.erb +2 -2
  47. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.22.cat1.erb +1 -1
  48. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.23.cat1.erb +1 -1
  49. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.28.cat1.erb +2 -2
  50. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.3.cat1.erb +3 -2
  51. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.31.cat1.erb +1 -1
  52. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.32.cat1.erb +1 -1
  53. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.34.cat1.erb +2 -2
  54. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.37.cat1.erb +1 -1
  55. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.38.cat1.erb +1 -1
  56. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.4.cat1.erb +1 -1
  57. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.40.cat1.erb +2 -2
  58. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.41.cat1.erb +1 -1
  59. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.42.cat1.erb +1 -1
  60. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.43.cat1.erb +1 -1
  61. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.44.cat1.erb +1 -1
  62. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.45.cat1.erb +1 -1
  63. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.46.cat1.erb +1 -1
  64. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.47.cat1.erb +2 -1
  65. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.55.cat1.erb +2 -2
  66. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.57.cat1.erb +2 -2
  67. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.59.cat1.erb +2 -2
  68. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.62.cat1.erb +1 -1
  69. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.63.cat1.erb +1 -1
  70. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.64.cat1.erb +6 -2
  71. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.66.cat1.erb +3 -3
  72. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.69.cat1.erb +1 -1
  73. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.7.cat1.erb +1 -1
  74. data/templates/cat1/_2.16.840.1.113883.10.20.24.3.76.cat1.erb +1 -1
  75. data/templates/cat1/_measures.cat1.erb +0 -2
  76. data/templates/cat1/_medication_details.cat1.erb +3 -3
  77. data/templates/cat1/_patient_data.cat1.erb +3 -0
  78. data/templates/cat1/_record_target.cat1.erb +6 -1
  79. data/templates/cat1/_result_value.cat1.erb +16 -13
  80. data/templates/html/_entries_by_section.html.erb +13 -5
  81. data/templates/html/show.html.erb +4 -2
  82. data/templates/metadata.hdata.erb +27 -24
  83. metadata +5 -2
@@ -5,7 +5,7 @@
5
5
  <!-- Risk Category Assessment -->
6
6
  <templateId root="2.16.840.1.113883.10.20.24.3.69"/>
7
7
  <id root="1.3.6.1.4.1.115" extension="<%= entry.id %>"/>
8
- <%== code_display(entry, 'preferred_code_sets' => ['LOINC', 'SNOMED-CT'], 'extra_content' => "sdtc:valueSet=\"#{value_set_oid}\"") %>
8
+ <%== code_display(entry, 'value_set_map' => value_set_map,'preferred_code_sets' => ['LOINC', 'SNOMED-CT'], 'extra_content' => "sdtc:valueSet=\"#{value_set_oid}\"") %>
9
9
  <statusCode code="completed"/>
10
10
 
11
11
  <effectiveTime>
@@ -21,7 +21,7 @@
21
21
  <participant typeCode="DEV">
22
22
  <participantRole classCode="MANU">
23
23
  <playingDevice classCode="DEV">
24
- <%== code_display(entry, 'preferred_code_sets' => ['LOINC', 'SNOMED-CT', 'ICD-9-PCS', 'ICD-10-PCS', 'CPT'], 'extra_content' => "sdtc:valueSet=\"#{value_set_oid}\"") %>
24
+ <%== code_display(entry, 'value_set_map' => value_set_map, 'preferred_code_sets' => ['LOINC', 'SNOMED-CT', 'ICD-9-PCS', 'ICD-10-PCS', 'CPT'], 'extra_content' => "sdtc:valueSet=\"#{value_set_oid}\"") %>
25
25
  </playingDevice>
26
26
  </participantRole>
27
27
  </participant>
@@ -15,7 +15,7 @@
15
15
  <high <%= value_or_null_flavor(entry.end_time) %>/>
16
16
  </effectiveTime>
17
17
 
18
- <%== code_display(entry, 'preferred_code_sets' => ['SNOMED-CT'], 'tag_name' => 'value', 'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\"") %>
18
+ <%== code_display(entry, 'value_set_map' => value_set_map,'preferred_code_sets' => ['SNOMED-CT'], 'tag_name' => 'value', 'extra_content' => "xsi:type=\"CD\" sdtc:valueSet=\"#{value_set_oid}\"") %>
19
19
  <!-- Status -->
20
20
  <entryRelationship typeCode="REFR">
21
21
  <observation classCode="OBS" moodCode="EVN">
@@ -19,7 +19,6 @@
19
19
  <th>eMeasure Title</th>
20
20
  <th>Version neutral identifier</th>
21
21
  <th>eMeasure Version Number</th>
22
- <th>NQF eMeasure Number</th>
23
22
  <th>Version specific identifier</th>
24
23
  </tr>
25
24
  </thead>
@@ -29,7 +28,6 @@
29
28
  <td><%= measure.title %></td>
30
29
  <td><%= measure.hqmf_set_id %></td>
31
30
  <td><%= measure.hqmf_version_number %></td>
32
- <td><%= measure.id %></td>
33
31
  <td><%= measure.hqmf_id %></td>
34
32
  <td></td>
35
33
  </tr>
@@ -1,9 +1,9 @@
1
- <% if entry.route.present?
1
+ <% if entry.respond_to?(:route) && entry.route.present?
2
2
  # hard coded to NCI Thesaurus for the code system since Cat I mandates that
3
3
  -%>
4
- <routeCode code="<%= entry.route['code'] %>" codeSystem="2.16.840.1.113883.3.26.1.1"/>
4
+ <routeCode code="<%= entry.route['code'] %>" codeSystem="<%= entry.route['codeSystem'] %>"/>
5
5
  <% end -%>
6
6
 
7
- <% if entry.dose.present? -%>
7
+ <% if entry.respond_to?(:dose) && entry.dose.present? -%>
8
8
  <doseQuantity value="<%= entry.dose['value']%>"/>
9
9
  <% end -%>
@@ -10,5 +10,8 @@
10
10
 
11
11
  </text>
12
12
  <%== render_patient_data(patient, measures) %>
13
+ <% patient.insurance_providers.each do |entry| %>
14
+ <%== render(:partial => '2.16.840.1.113883.10.20.24.3.55', :locals => {:entry => entry}) %>
15
+ <% end %>
13
16
  </section>
14
17
  </component>
@@ -2,7 +2,12 @@
2
2
  <patientRole>
3
3
  <!-- id root="Cypress" extension="<%= patient.id %>"/ -->
4
4
  <!-- Fake Medicare HIC number -->
5
- <id extension="12345" root="2.16.840.1.113883.4.572"/>
5
+ <%
6
+ # get the pateint id , treate it as a hex number, turn it to a string and strip the last 9 characters off of it
7
+ hic = patient.id.to_s.hex.to_s
8
+ hic.slice!(hic.length-9,9)
9
+ %>
10
+ <id extension="<%= hic %>A" root="2.16.840.1.113883.4.572"/>
6
11
  <addr use="HP">
7
12
  <streetAddressLine>202 Burlington Rd.</streetAddressLine>
8
13
  <city>Bedford</city>
@@ -1,16 +1,19 @@
1
- <% ev = entry.values.first
2
- if ev.present?
3
- if ev.respond_to?(:codes) -%>
4
- <%== code_display(ev, 'preferred_code_sets' => ['LOINC', 'SNOMED-CT', 'ICD-9-CM', 'ICD-10-CM'], 'tag_name' => 'value', 'extra_content' => "xsi:type=\"CD\"") %>
5
- <% elsif ev.respond_to?(:scalar) -%>
6
- <% if is_num?(ev.scalar) -%>
7
- <value xsi:type="PQ" value="<%= ev.scalar %>" <% if ev.units && (ev.units != "") -%>unit="<%= ev.units %>"<% end -%>/>
8
- <% elsif is_bool?(ev.scalar)%>
9
- <value xsi:type="BL" value="<%= ev.scalar %>" />
10
- <% else -%>
11
- <value xsi:type="ST" ><%= ev.scalar %></value>
12
- <% end
13
- end
1
+ <% values.compact!
2
+ if !values.empty?
3
+ values.each do |ev|
4
+ if ev.respond_to?(:codes) -%>
5
+ <%== code_display(ev, 'preferred_code_sets' => ['LOINC', 'SNOMED-CT', 'ICD-9-CM', 'ICD-10-CM'], 'tag_name' => 'value', 'extra_content' => "xsi:type=\"CD\"") %>
6
+ <% elsif ev.respond_to?(:scalar) -%>
7
+ <% if is_num?(ev.scalar) -%>
8
+ <value xsi:type="PQ" value="<%= ev.scalar %>" <% if ev.units && (ev.units != "") -%>unit="<%= ev.units %>"<% end -%>/>
9
+ <% elsif is_bool?(ev.scalar)%>
10
+ <value xsi:type="BL" value="<%= ev.scalar %>" />
11
+ <% else -%>
12
+ <value xsi:type="ST" ><%= ev.scalar %></value>
13
+ <% end
14
+ end
15
+ end
16
+ # else is empty
14
17
  else -%>
15
18
  <value xsi:type="CD" nullFlavor="UNK"/>
16
19
  <% end -%>
@@ -1,13 +1,21 @@
1
1
  <div id="patient_information_by_section" style="display:block">
2
2
  <%
3
3
  entries_by_section = {}
4
+ udcs = nil
5
+ if measures.length > 0
6
+ udcs = unique_data_criteria(measures)
7
+ end
4
8
  Record::Sections.each do |section|
5
9
  if section != :insurance_providers
6
- patient.send(section).each do |entry|
7
- decoded_section = decode_hqmf_section(section, entry.oid)
8
- entries_by_section[decoded_section] ||= []
9
- entries_by_section[decoded_section] << entry
10
- end if patient.respond_to? section
10
+ if patient.respond_to? section
11
+ patient.send(section).each do |entry|
12
+ if udcs.nil? || entry_matches_criteria(entry, udcs)
13
+ decoded_section = decode_hqmf_section(section, entry.oid)
14
+ entries_by_section[decoded_section] ||= []
15
+ entries_by_section[decoded_section] << entry
16
+ end
17
+ end
18
+ end
11
19
  end
12
20
  end
13
21
  %>
@@ -133,8 +133,10 @@
133
133
  <div>
134
134
  <h3><a href="#" onclick="toggle('table_by_encounter');" id="toggle_button">View By Encounter</a></h3>
135
135
  </div>
136
- <%== render :partial => 'entries_by_section', :locals => {patient: patient, code_map: code_map} %>
137
- <%== render :partial => 'entries_by_encounter', :locals => {patient: patient, code_map: code_map} %>
136
+ <%== render :partial => 'entries_by_section', :locals => {patient: patient, code_map: code_map, measures: measures} %>
137
+ <% if measures.length==0 %>
138
+ <%== render :partial => 'entries_by_encounter', :locals => {patient: patient, code_map: code_map, measures: measures} %>
139
+ <% end %>
138
140
 
139
141
  <br /><br />
140
142
  <br /><br />
@@ -1,35 +1,38 @@
1
- <Document xmlns="http://www.hl7.org/schemas/hdata/2009/11/metadata">
2
- <MediaType>application/xml</MediaType>
3
- <MediaType>application/json</MediaType>
1
+ <hrf-md:DocumentMetaData <% if namespace %>xmlns:hrf-md="http://www.hl7.org/schemas/hdata/2009/11/metadata"<%end%>>
2
+ <% if metadata.mime_types %>
3
+ <% metadata.mime_types.each do |mt| %>
4
+ <hrf-md:MediaType>mt</hrf-md:MediaType>
5
+ <% end %>
6
+ <% end %>
4
7
  <% metadata.pedigrees.each do |pedigree| %>
5
8
  <%== render :partial => "pedigree", locals: {pedigree: pedigree}%>
6
9
  <% end %>
7
- <Title><%= entry.id %></Title>
8
- <LinkedDocuments>
10
+ <hrf-md:Title><%= entry.id %></hrf-md:Title>
11
+ <hrf-md:LinkedDocuments>
9
12
  <% metadata.linked_documents.each do |link| %>
10
- <Link>
11
- <Target <% if link.extension %> targetExtension="<%=link.extension%>" <% end %>><%= link.uri %></Target>
12
- </Link>
13
+ <hrf-md:Link>
14
+ <hrf-md:Target <% if link.extension %> targetExtension="<%=link.extension%>" <% end %>><%= link.href %></hrf-md:Target>
15
+ </hrf-md:Link>
13
16
  <% end %>
14
- </LinkedDocuments>
15
- <RecordDate>
16
- <CreatedDateTime><%= metadata.original_creation_time%></CreatedDateTime>
17
- <Modified>
17
+ </hrf-md:LinkedDocuments>
18
+ <hrf-md:RecordDate>
19
+ <hrf-md:CreatedDateTime><%= metadata.original_creation_time%></hrf-md:CreatedDateTime>
20
+ <hrf-md:Modified>
18
21
  <% metadata.modified_dates.each do |md| %>
19
- <ModifiedInfo>
20
- <ChangeDateTime><%= md.timestamp %></ChangeDateTime>
22
+ <hrf-md:ModifiedInfo>
23
+ <hrf-md:ChangeDateTime><%= md.timestamp %></hrf-md:ChangeDateTime>
21
24
  <%== render :partial => "pedigree", locals: {pedigree: md.pedigree}%>
22
- </ModifiedInfo>
25
+ </hrf-md:ModifiedInfo>
23
26
  <% end %>
24
- </Modified>
25
- <Copied>
27
+ </hrf-md:Modified>
28
+ <hrf-md:Copied>
26
29
  <% metadata.copied_dates.each do |cd| %>
27
- <CopiedInfo>
28
- <ChangeDateTime><%= cd.timestamp %></ChangeDateTime>
30
+ <hrf-md:CopiedInfo>
31
+ <hrf-md:ChangeDateTime><%= cd.timestamp %></hrf-md:ChangeDateTime>
29
32
  <%== render :partial => "pedigree", locals: {pedigree: cd.pedigree}%>
30
- </CopiedInfo>
33
+ </hrf-md:CopiedInfo>
31
34
  <% end %>
32
- </Copied>
33
- </RecordDate>
34
- <Confidentiality><%= metadata.confidentiality%></Confidentiality>
35
- </Document>
35
+ </hrf-md:Copied>
36
+ </hrf-md:RecordDate>
37
+ <hrf-md:Confidentiality><%= metadata.confidentiality%></hrf-md:Confidentiality>
38
+ </hrf-md:DocumentMetaData>
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: health-data-standards
3
3
  version: !ruby/object:Gem::Version
4
- version: 3.1.1
4
+ version: 3.2.0
5
5
  prerelease:
6
6
  platform: ruby
7
7
  authors:
@@ -13,7 +13,7 @@ authors:
13
13
  autorequire:
14
14
  bindir: bin
15
15
  cert_chain: []
16
- date: 2013-04-22 00:00:00.000000000 Z
16
+ date: 2013-06-24 00:00:00.000000000 Z
17
17
  dependencies:
18
18
  - !ruby/object:Gem::Dependency
19
19
  name: rest-client
@@ -195,6 +195,7 @@ files:
195
195
  - lib/health-data-standards/export/helper/cat1_view_helper.rb
196
196
  - lib/health-data-standards/export/helper/gc32_view_helper.rb
197
197
  - lib/health-data-standards/export/helper/html_view_helper.rb
198
+ - lib/health-data-standards/export/helper/scooped_view_helper.rb
198
199
  - lib/health-data-standards/export/html.rb
199
200
  - lib/health-data-standards/export/qrda/entry_template_resolver.rb
200
201
  - lib/health-data-standards/export/rendering_context.rb
@@ -282,6 +283,7 @@ files:
282
283
  - lib/health-data-standards/models/cqm/aggregate_objects.rb
283
284
  - lib/health-data-standards/models/cqm/bundle.rb
284
285
  - lib/health-data-standards/models/cqm/measure.rb
286
+ - lib/health-data-standards/models/cqm/patient_cache.rb
285
287
  - lib/health-data-standards/models/cqm/query_cache.rb
286
288
  - lib/health-data-standards/models/encounter.rb
287
289
  - lib/health-data-standards/models/entry.rb
@@ -362,6 +364,7 @@ files:
362
364
  - lib/hqmf-parser/parser.rb
363
365
  - lib/hqmf-parser.rb
364
366
  - lib/util/counter.rb
367
+ - templates/_author.hdata.erb
365
368
  - templates/_pedigree.hdata.erb
366
369
  - templates/c32/_allergies.c32.erb
367
370
  - templates/c32/_allergies_no_current.c32.erb