health-data-standards 0.7.0 → 0.7.1

data/lib/health-data-standards/models/comment.rb

@@ -0,0 +1,2 @@
+class Comment < Entry
+end

data/lib/health-data-standards/models/condition.rb

@@ -0,0 +1,10 @@
+class Condition < Entry
+  field :type,          type: String
+  field :causeOfDeath,  type: Boolean
+  field :name,          type: String
+  
+  # embeds_many :treating_provider,  class_name: "Provider"
+  
+  alias   :cause_of_death         :causeOfDeath
+  alias   :cause_of_death=        :causeOfDeath=
+end

data/lib/health-data-standards/models/entry.rb

@@ -11,6 +11,11 @@ class Entry
   field :status, type: String
   field :codes, type: Hash, default: {}
   field :value, type: Hash, default: {}
+  
+  attr_protected :version
+  attr_protected :_id
+  attr_protected :created_at
+  attr_protected :updated_at
 
   def single_code_value?
     codes.size == 1 && codes.first[1].size == 1

data/lib/health-data-standards/models/fulfillment_history.rb

@@ -9,6 +9,8 @@ class FulfillmentHistory
   field :fillNumber, type: Integer
   field :fillStatus, type: Hash
   
+  alias :prescription_number :prescriptionNumber
+  alias :prescription_number= :prescriptionNumber=
   alias :dispensing_pharmacy_location :dispensingPharmacyLocation
   alias :dispensing_pharmacy_location= :dispensingPharmacyLocation=
   alias :dispense_date :dispenseDate

data/lib/health-data-standards/models/lab_result.rb

@@ -4,4 +4,5 @@ class LabResult < Entry
   
   alias :reference_range :referenceRange
   alias :reference_range= :referenceRange=
+  
 end

data/lib/health-data-standards/models/provider.rb

@@ -0,0 +1,51 @@
+class Provider
+  include Mongoid::Document
+  
+  field :title       , type: String
+  field :given_name  , type: String
+  field :family_name , type: String
+  field :npi         , type: String
+  field :tin         , type: String
+  field :specialty   , type: String
+  field :phone       , type: String
+  field :organization, type: String
+  
+  validates_uniqueness_of :npi, allow_blank: true
+  
+  
+  def records(effective_date=nil)
+    Record.by_provider(self, effective_date)
+  end
+  
+  # validate the NPI, should be 10 or 15 digits total with the final digit being a
+  # checksum using the Luhn algorithm with additional special handling as described in
+  # https://www.cms.gov/NationalProvIdentStand/Downloads/NPIcheckdigit.pdf 
+  def self.valid_npi?(npi)
+    return false if npi.length != 10 and npi.length != 15
+    return false if npi.gsub(/\d/, '').length > 0 # npi must be all digits
+    return false if npi.length == 15 and (npi =~ /^80840/)==nil # 15 digit npi must start with 80840
+  
+    # checksum is always calculated as if 80840 prefix is present
+    if npi.length==10
+      npi = '80840'+npi
+    end
+  
+    return luhn_checksum(npi[0,14])==npi[14]
+  end
+
+  def self.luhn_checksum(num)
+    double = {'0' => 0, '1' => 2, '2' => 4, '3' => 6, '4' => 8, '5' => 1, '6' => 3, '7' => 5, '8' => 7, '9' => 9}
+    sum = 0
+    num.reverse!
+    num.split("").each_with_index do |char, i|
+      if (i%2)==0
+        sum+=double[char]
+      else
+        sum+=char.to_i
+      end
+    end
+    sum = (9*sum)%10
+  
+    return sum.to_s
+  end
+end

data/lib/health-data-standards/models/provider_performance.rb

@@ -0,0 +1,10 @@
+class ProviderPerformance
+  include Mongoid::Document
+  
+  field :start_date, type: Integer
+  field :end_date, type: Integer
+  
+  belongs_to :provider
+  embedded_in :record
+  
+end

data/lib/health-data-standards/models/record.rb

@@ -1,11 +1,11 @@
 class Record
-
   include Mongoid::Document
   
   field :first, type: String
   field :last, type: String
   field :gender, type: String
   field :birthdate, type: Integer
+  field :deathdate, type: Integer
   field :effective_time, type: Integer
   field :race, type: Hash
   field :ethnicity, type: Hash
@@ -13,14 +13,31 @@ class Record
   field :test_id, type: BSON::ObjectId
   field :medical_record_number, type: String
 
+  embeds_many :allergies
+  embeds_many :care_goals, class_name: "Entry"
+  embeds_many :conditions, class_name: "Entry"
+  embeds_many :encounters
+  embeds_many :immunizations
+  embeds_many :medical_equipment, class_name: "Entry"
+  embeds_many :medications
+  embeds_many :procedures
+  embeds_many :results, class_name: "LabResult"
+  embeds_many :social_history, class_name: "Entry"
+  embeds_many :vital_signs, class_name: "Entry"
+
   Sections = [:allergies, :care_goals, :conditions, :encounters, :immunizations, :medical_equipment,
    :medications, :procedures, :results, :social_history, :vital_signs]
 
-  Sections.each do |section|
-    embeds_many section, as: :entry_list, class_name: "Entry"
+  embeds_many :provider_performances
+  
+  scope :by_provider, ->(prov, effective_date) { (effective_date) ? where(provider_queries(prov.id, effective_date)) : where('provider_performances.provider_id'=>prov.id)  }
+  scope :by_patient_id, ->(id) { where(:medical_record_number => id) }
+  
+  def providers
+    provider_performances.map {|pp| pp.provider }
   end
   
   def over_18?
     Time.at(birthdate) < Time.now.years_ago(18)
   end
-end
+end

data/lib/health-data-standards/models/treating_provider.rb

@@ -0,0 +1,3 @@
+class TreatingProvider < Entry
+  field :treatingProviderID, type: Integer
+end

data/lib/health-data-standards/util/hl7_helper.rb

@@ -20,6 +20,7 @@ module HealthDataStandards
           nil
         end
       end
+      
     end
   end
 end

data/templates/_condition.gc32.erb

@@ -0,0 +1,11 @@
+<condition <% if condition.cause_of_death %> causeOfDeath="true" <% end %> xmlns="urn:hl7-org:greencda:c32">
+  <id><%= condition.id%></id>
+  <%== code_display result, "tag_name" => "code", 'preferred_code_sets' => ['SNOMED-CT'] %>
+  <% if condition.name %>
+    <name><%= condition.name%></name>
+  <% end %>
+  <effectiveTime>
+    <start><%= Time.at(condition.start_time)%></start>
+    <end><%= Time.at(condition.end_time)%></end>
+  </effectiveTime>
+</condition>

data/templates/_result.gc32.erb

@@ -0,0 +1,20 @@
+<result xmlns="urn:hl7-org:greencda:c32">
+    <id><%= result.id %></id>
+    
+    <%== code_display result, "tag_name" => "code", 'preferred_code_sets' => ['SNOMED-CT'] %>
+    <% if result.status %>
+      <status code="completed"/>
+    <% end %>
+    
+    <effectiveTime><%= Time.at(result.time) %></effectiveTime>
+
+
+    <value amount="<%= result.value['scalar']%>" unit="<%= result.value['units'] %>" />
+    <% if result.interpretation%>
+      <% code = result.interpretation.first%>
+      <interpretation code="<%= code.last %>" codeSystem="<%= CodeSystemHelper.oid_for_code_system(code.first) %>">
+    <% end %>
+    <% if result.reference_range %>
+      <referenceRange><%= result.reference_range %></referenceRange>
+    <% end %>
+</result>

data/templates/show.c32.erb

@@ -29,11 +29,22 @@
         </name>
         <administrativeGenderCode code="<%= patient.gender %>" codeSystem="2.16.840.1.113883.5.1" codeSystemName="HL7 AdministrativeGender"/>
         <birthTime value="<%= Time.at(patient.birthdate).utc.to_formatted_s(:number) %>"/>
-        <languageCommunication>
-          <templateId root="2.16.840.1.113883.3.88.11.83.2" assigningAuthorityName="HITSP/C83"/>
-          <templateId root="1.3.6.1.4.1.19376.1.5.3.1.2.1" assigningAuthorityName="IHE/PCC"/>
-          <languageCode code="en-US"/>
-        </languageCommunication>
+        <% if (patient.race) %>
+          <raceCode code="<%= patient.race['code'] %>" <% if patient.race['name']%>displayName="<%= patient.race['name'] %>"<% end %> codeSystemName="CDC Race and Ethnicity" codeSystem="2.16.840.1.113883.6.238"/>
+        <% end %>
+        <% if (patient.race) %>
+          <ethnicGroupCode code="<%= patient.ethnicity['code'] %>" <% if patient.ethnicity['name']%>displayName="<%= patient.ethnicity['name'] %>"<% end %> codeSystemName="CDC Race and Ethnicity" codeSystem="2.16.840.1.113883.6.238"/>
+        <% end %>
+        <%
+          languages = patient.languages 
+          languages = ["en-US"] if languages.nil? or languages.empty?
+          languages.each do |language|%>
+          <languageCommunication>
+            <templateId root="2.16.840.1.113883.3.88.11.83.2" assigningAuthorityName="HITSP/C83"/>
+            <templateId root="1.3.6.1.4.1.19376.1.5.3.1.2.1" assigningAuthorityName="IHE/PCC"/>
+            <languageCode code="<%= language %>"/>
+          </languageCommunication>
+        <% end %>
       </patient>
     </patientRole>
   </recordTarget>

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: health-data-standards
 version: !ruby/object:Gem::Version
-  version: 0.7.0
+  version: 0.7.1
   prerelease: 
 platform: ruby
 authors:
@@ -9,12 +9,12 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-01-31 00:00:00.000000000 -05:00
+date: 2012-02-17 00:00:00.000000000 -05:00
 default_executable: 
 dependencies:
 - !ruby/object:Gem::Dependency
   name: erubis
-  requirement: &2152718120 !ruby/object:Gem::Requirement
+  requirement: &2153337220 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -22,10 +22,10 @@ dependencies:
         version: '2.6'
   type: :runtime
   prerelease: false
-  version_requirements: *2152718120
+  version_requirements: *2153337220
 - !ruby/object:Gem::Dependency
   name: mongoid
-  requirement: &2152717640 !ruby/object:Gem::Requirement
+  requirement: &2153336700 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -33,10 +33,10 @@ dependencies:
         version: 2.4.2
   type: :runtime
   prerelease: false
-  version_requirements: *2152717640
+  version_requirements: *2153336700
 - !ruby/object:Gem::Dependency
   name: uuid
-  requirement: &2152717180 !ruby/object:Gem::Requirement
+  requirement: &2153336240 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -44,10 +44,10 @@ dependencies:
         version: 2.3.4
   type: :runtime
   prerelease: false
-  version_requirements: *2152717180
+  version_requirements: *2153336240
 - !ruby/object:Gem::Dependency
   name: builder
-  requirement: &2152716720 !ruby/object:Gem::Requirement
+  requirement: &2153335760 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -55,10 +55,10 @@ dependencies:
         version: 3.0.0
   type: :runtime
   prerelease: false
-  version_requirements: *2152716720
+  version_requirements: *2153335760
 - !ruby/object:Gem::Dependency
   name: nokogiri
-  requirement: &2152716260 !ruby/object:Gem::Requirement
+  requirement: &2153335280 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -66,7 +66,7 @@ dependencies:
         version: 1.4.7
   type: :runtime
   prerelease: false
-  version_requirements: *2152716260
+  version_requirements: *2153335280
 description: A library for generating and consuming various healthcare related formats.
   This includes HITSP C32, ASTM CCR and PQRI.
 email: talk@projectpophealth.org
@@ -77,21 +77,37 @@ files:
 - lib/health-data-standards/export/c32.rb
 - lib/health-data-standards/export/ccr.rb
 - lib/health-data-standards/export/csv.rb
+- lib/health-data-standards/export/green_c32/entry.rb
+- lib/health-data-standards/export/green_c32/export_generator.rb
 - lib/health-data-standards/export/rendering_context.rb
 - lib/health-data-standards/export/template_helper.rb
 - lib/health-data-standards/export/view_helper.rb
 - lib/health-data-standards/ext/string.rb
 - lib/health-data-standards/ext/symbol.rb
 - lib/health-data-standards/import/c32/allergy_importer.rb
+- lib/health-data-standards/import/c32/condition_importer.rb
 - lib/health-data-standards/import/c32/encounter_importer.rb
 - lib/health-data-standards/import/c32/immunization_importer.rb
 - lib/health-data-standards/import/c32/medication_importer.rb
 - lib/health-data-standards/import/c32/patient_importer.rb
 - lib/health-data-standards/import/c32/procedure_importer.rb
+- lib/health-data-standards/import/c32/provider_importer.rb
 - lib/health-data-standards/import/c32/result_importer.rb
 - lib/health-data-standards/import/c32/section_importer.rb
 - lib/health-data-standards/import/c32/vital_sign_importer.rb
+- lib/health-data-standards/import/ccr/patient_importer.rb
+- lib/health-data-standards/import/ccr/product_importer.rb
+- lib/health-data-standards/import/ccr/provider_importer.rb
+- lib/health-data-standards/import/ccr/result_importer.rb
+- lib/health-data-standards/import/ccr/section_importer.rb
+- lib/health-data-standards/import/ccr/simple_importer.rb
+- lib/health-data-standards/import/green_c32/condition_importer.rb
+- lib/health-data-standards/import/green_c32/patient_importer.rb
+- lib/health-data-standards/import/green_c32/result_importer.rb
+- lib/health-data-standards/import/green_c32/section_importer.rb
 - lib/health-data-standards/models/allergy.rb
+- lib/health-data-standards/models/comment.rb
+- lib/health-data-standards/models/condition.rb
 - lib/health-data-standards/models/encounter.rb
 - lib/health-data-standards/models/entry.rb
 - lib/health-data-standards/models/fulfillment_history.rb
@@ -100,7 +116,10 @@ files:
 - lib/health-data-standards/models/medication.rb
 - lib/health-data-standards/models/order_information.rb
 - lib/health-data-standards/models/procedure.rb
+- lib/health-data-standards/models/provider.rb
+- lib/health-data-standards/models/provider_performance.rb
 - lib/health-data-standards/models/record.rb
+- lib/health-data-standards/models/treating_provider.rb
 - lib/health-data-standards/util/code_system_helper.rb
 - lib/health-data-standards/util/hl7_helper.rb
 - lib/health-data-standards.rb
@@ -108,6 +127,7 @@ files:
 - templates/_allergies_no_current.c32.erb
 - templates/_care_goals.c32.erb
 - templates/_code_with_reference.c32.erb
+- templates/_condition.gc32.erb
 - templates/_conditions.c32.erb
 - templates/_conditions_no_current.c32.erb
 - templates/_encounters.c32.erb
@@ -117,6 +137,7 @@ files:
 - templates/_medications_no_current.c32.erb
 - templates/_narrative_block.c32.erb
 - templates/_procedures.c32.erb
+- templates/_result.gc32.erb
 - templates/_results.c32.erb
 - templates/_social_history.c32.erb
 - templates/_vital_signs.c32.erb