hdf5 0.2.0 → 0.2.1
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/hdf5.gemspec +2 -2
- data/lib/hdf5.rb +26 -3
- metadata +1 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 768ec911dfe373d8df6c7b9c01d9c6d6a8341c30
|
|
4
|
+
data.tar.gz: 2c9259ac302f0c8e6642737c044ff55e7edb31ee
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 903f50b1de170a73a520727b5dbe7d720844c486341d852cd4e776aa22a60a4828a956ba46e6d560ef2095788b732ceafb918056b56457ff97e4353a9e4dbdfa
|
|
7
|
+
data.tar.gz: 51240f356a351cd3e4d759e7e6e0d7fb3040c58fe82a30bebc2292335bfc6c70113a7babcd483b114c1426a2a0f7bbe3e1d6bbb366114d339b53ed171d83df83
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.2.
|
|
1
|
+
0.2.1
|
data/hdf5.gemspec
CHANGED
|
@@ -2,12 +2,12 @@
|
|
|
2
2
|
# DO NOT EDIT THIS FILE DIRECTLY
|
|
3
3
|
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
|
|
4
4
|
# -*- encoding: utf-8 -*-
|
|
5
|
-
# stub: hdf5 0.2.
|
|
5
|
+
# stub: hdf5 0.2.1 ruby lib
|
|
6
6
|
# stub: ext/hdf5/extconf.rb
|
|
7
7
|
|
|
8
8
|
Gem::Specification.new do |s|
|
|
9
9
|
s.name = "hdf5"
|
|
10
|
-
s.version = "0.2.
|
|
10
|
+
s.version = "0.2.1"
|
|
11
11
|
|
|
12
12
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
|
13
13
|
s.require_paths = ["lib"]
|
data/lib/hdf5.rb
CHANGED
|
@@ -1,10 +1,28 @@
|
|
|
1
1
|
require 'ffi'
|
|
2
2
|
class NArray
|
|
3
|
-
|
|
3
|
+
# Returns an FFI::Pointer which points to the location
|
|
4
|
+
# of the actual data array in memory.
|
|
5
|
+
def ffi_pointer
|
|
4
6
|
FFI::Pointer.new(Hdf5.narray_data_address(self))
|
|
5
7
|
end
|
|
6
8
|
end
|
|
9
|
+
|
|
10
|
+
# This is a module for reading and manipulating HDF5 (Hierarchical Data Format)
|
|
11
|
+
# files. At the current time (July 2014) it is capable of basic reading operations.
|
|
12
|
+
# However, its use of the FFI library means that extending its capabilities is easy
|
|
13
|
+
# and quick. For a basic example see the test file.
|
|
14
|
+
# Basic usage:
|
|
15
|
+
# file = Hdf5::H5File.new('filename.hdf5')
|
|
16
|
+
# dataset = file.dataset('/path/to/dataset')
|
|
17
|
+
# narray = dataset.narray_all
|
|
18
|
+
# file.close
|
|
19
|
+
|
|
20
|
+
|
|
7
21
|
module Hdf5
|
|
22
|
+
|
|
23
|
+
# A module containing functions for relating HDF5 types to the appropriate
|
|
24
|
+
# FFI symbol. At the moment these are set by hand, but at some point in the
|
|
25
|
+
# future they should be set dynamically by interrogation of the the library.
|
|
8
26
|
module H5Types
|
|
9
27
|
extend FFI::Library
|
|
10
28
|
class << self
|
|
@@ -49,7 +67,12 @@ module Hdf5
|
|
|
49
67
|
attach_function :group_open, :H5Gopen2, [H5Types.hid_t, :string, H5Types.hid_t], H5Types.hid_t
|
|
50
68
|
attach_function :get_type, :H5Iget_type, [H5Types.hid_t], H5Types.hid_t
|
|
51
69
|
#
|
|
52
|
-
# Object for wrapping an HDF file
|
|
70
|
+
# Object for wrapping an HDF file. Basic usage:
|
|
71
|
+
# file = Hdf5::H5File.new('filename.hdf5')
|
|
72
|
+
# dataset = file.dataset('/path/to/dataset')
|
|
73
|
+
# narray = dataset.narray_all
|
|
74
|
+
# file.close
|
|
75
|
+
#
|
|
53
76
|
class H5File
|
|
54
77
|
extend FFI::Library
|
|
55
78
|
ffi_lib 'hdf5'
|
|
@@ -141,7 +164,7 @@ module Hdf5
|
|
|
141
164
|
# complex datatypes.
|
|
142
165
|
def narray_all
|
|
143
166
|
narr = NArray.send(narray_type, *dataspace.dims)
|
|
144
|
-
basic_read(@id, datatype.id, 0, 0, 0, narr.
|
|
167
|
+
basic_read(@id, datatype.id, 0, 0, 0, narr.ffi_pointer)
|
|
145
168
|
narr
|
|
146
169
|
end
|
|
147
170
|
#def array
|