gsl 2.1.0.1 → 2.1.0.2
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- checksums.yaml +4 -4
- data/.travis.yml +3 -1
- data/ChangeLog +8 -0
- data/ext/gsl_native/complex.c +11 -1
- data/ext/gsl_native/error.c +2 -2
- data/ext/gsl_native/gsl.c +4 -0
- data/ext/gsl_native/include/rb_gsl.h +6 -0
- data/ext/gsl_native/include/rb_gsl_interp2d.h +40 -0
- data/ext/gsl_native/interp2d.c +266 -0
- data/ext/gsl_native/spline2d.c +211 -0
- data/lib/gsl.rb +3 -2
- data/lib/gsl/interp2d_fix.rb +64 -0
- data/lib/gsl/version.rb +1 -1
- data/rdoc/interp2d.rdoc +0 -0
- data/test/gsl/complex_test.rb +12 -1
- data/test/gsl/interp2d_test.rb +108 -0
- data/test/gsl/spline2d_test.rb +81 -0
- metadata +168 -158
data/lib/gsl.rb
CHANGED
@@ -1,13 +1,14 @@
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1
1
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begin
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2
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-
require 'narray'
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2
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+
require 'narray' if ENV['NARRAY']
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3
3
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rescue LoadError
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4
4
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end
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5
5
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6
6
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begin
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7
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-
require 'nmatrix/nmatrix'
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7
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+
require 'nmatrix/nmatrix' if ENV['NMATRIX']
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8
8
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rescue LoadError
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9
9
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end
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10
10
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11
11
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require 'gsl_native'
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12
12
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require 'gsl/version'
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13
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require 'gsl/oper'
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14
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+
require 'gsl/interp2d_fix' if GSL::GSL_VERSION >= '2.0'
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@@ -0,0 +1,64 @@
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1
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+
# Reasons for existence of this code:
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2
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#
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3
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# It so happens that GSL's 2D interpolation methods are somehow swapping X and
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4
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# Y co-ordinates and returning a wrong result. This is a bug in GSL, and in order
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5
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# to make up for that, we swap the x and y points before passing them to GSL.
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6
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# The detect_gsl_interp2d_swapping_bug method tests the inter2d eval function
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7
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# to see if the bug exists so that in case a future GSL update fixes the bug,
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8
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# this Ruby wrapper will remain unaffected.
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9
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#
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10
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# For testing whether the bug exists, the eval method is run and tested against
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11
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# what is known to be corrent output (ans_expected), and the @@swapped class
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12
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# variable is set to true if the result is not consistent with the expected
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+
# output. If @swapped is true, the x and y values are internally swapped by
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# the Ruby wrapper before passing them to GSL for processing.
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module GSL
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class Interp2d
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module BugDetectHelper
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class << self
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def asymmetric_function(x, y)
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x - 2*y
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end
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end
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end
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+
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def self.detect_gsl_interp2d_swapping_bug
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26
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@@swapped = nil
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x = GSL::Vector.alloc((-4..4).to_a)
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y = GSL::Vector.alloc((-4..4).to_a)
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29
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+
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30
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z = []
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31
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x.each do |xi|
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y.each do |yi|
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z << BugDetectHelper.asymmetric_function(xi, yi)
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end
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35
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+
end
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36
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z = GSL::Vector.alloc(z)
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37
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+
i2d = GSL::Interp2d.alloc(GSL::Interp2d::BICUBIC, x, y, z)
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38
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+
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39
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test_x = x[1]
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40
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test_y = y[1]
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41
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+
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42
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ans_normal = i2d.eval(x,y,z,test_x, test_y)
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+
ans_swapped = i2d.eval(x,y,z,test_y, test_x)
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ans_expected = BugDetectHelper.asymmetric_function(test_x, test_y)
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45
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+
@@swapped = ans_expected == ans_normal
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+
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@@swapped
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end
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49
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def self.swapped
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@@swapped
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end
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end
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54
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+
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class Spline2d
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@@swapped = GSL::Interp2d.detect_gsl_interp2d_swapping_bug
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+
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58
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def self.swapped
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@@swapped
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60
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+
end
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61
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end
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62
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end
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63
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64
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GSL::Interp2d.detect_gsl_interp2d_swapping_bug
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data/lib/gsl/version.rb
CHANGED
data/rdoc/interp2d.rdoc
ADDED
File without changes
|
data/test/gsl/complex_test.rb
CHANGED
@@ -16,5 +16,16 @@ class ComplexTest < GSL::TestCase
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16
16
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'gsl_complex_polar imag part at (r=%g,t=%g)' % [r, t]
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17
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}
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18
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end
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19
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-
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19
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+
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20
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# Test if it is possible to create a GSL::Complex from ::Complex
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def test_rb_complex_creation
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22
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rb_comp = Complex(rand, rand)
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23
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+
|
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z = GSL::Complex.alloc(rb_comp)
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|
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assert_rel z.real, rb_comp.real, GSL::DBL_EPSILON,
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27
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"gsl_complex real part. Re(#{rb_comp}) = #{z.real}"
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28
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assert_rel z.imag, rb_comp.imag, GSL::DBL_EPSILON,
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29
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"gsl_complex imag part. Im(#{rb_comp}) = #{z.imag}"
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30
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end
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31
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end
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@@ -0,0 +1,108 @@
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require 'test_helper'
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2
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3
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class Interp2dTest < GSL::TestCase
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4
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5
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def setup
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6
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x_samples =(-20..20).map(&:to_f).to_a
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7
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+
y_samples = (-20..20).map(&:to_f).to_a
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8
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+
z_samples = []
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9
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x_samples.each do |x|
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10
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y_samples.each do |y|
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11
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z_samples << saddle(x,y)
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12
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+
end
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13
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+
end
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14
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+
|
15
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+
@x_array = GSL::Vector.alloc(x_samples)
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16
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@y_array = GSL::Vector.alloc(y_samples)
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17
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@z_array = GSL::Vector.alloc(z_samples)
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|
19
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tolerance = 0.05 # 5% inaccuracy is tolerated in tests below
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20
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21
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|
22
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+
@i2d_bicubic = GSL::Interp2d.alloc(GSL::Interp2d::BICUBIC,
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23
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+
@x_array, @y_array, @z_array)
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24
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+
|
25
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+
@i2d_bilinear = GSL::Interp2d.alloc(GSL::Interp2d::BILINEAR,
|
26
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+
@x_array, @y_array, @z_array)
|
27
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+
end
|
28
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+
|
29
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def saddle(x,y)
|
30
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x*x - y*y
|
31
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+
end
|
32
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+
|
33
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+
def test_constants
|
34
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+
assert_equal 0, GSL::Interp2d::BICUBIC
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35
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+
assert_equal 1, GSL::Interp2d::BILINEAR
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36
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+
end
|
37
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+
|
38
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+
def test_alloc_alternate_arg_construct
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39
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+
i2d = GSL::Interp2d.alloc(GSL::Interp2d::BICUBIC, 10, 10)
|
40
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+
|
41
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+
assert_equal GSL::Interp2d, i2d.class
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42
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+
end
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43
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+
|
44
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+
def test_alloc
|
45
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+
assert_equal GSL::Interp2d, @i2d_bicubic.class
|
46
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+
assert_equal GSL::Interp2d, @i2d_bilinear.class
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47
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+
end
|
48
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+
|
49
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+
def test_alloc_init
|
50
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+
i2d = GSL::Interp2d.alloc(GSL::Interp2d::BICUBIC, @x_array.size, @y_array.size)
|
51
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+
i2d.init(@x_array, @y_array, @z_array)
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52
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+
|
53
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assert_equal GSL::Interp2d, i2d.class
|
54
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+
end
|
55
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+
|
56
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+
def test_info
|
57
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+
str = <<-EOF
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58
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Class: GSL::Interp2d
|
59
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+
SuperClass: GSL::Object
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60
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+
Type: bilinear
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61
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+
xmin: -20.000000
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62
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xmax: 20.000000
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63
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ymin: -20.000000
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64
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+
ymax: 20.000000
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65
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+
xsize: 41
|
66
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+
ysize: 41
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67
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+
EOF
|
68
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+
assert_equal str, @i2d_bilinear.info
|
69
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+
end
|
70
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+
|
71
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+
def test_use_case_saddle_interpolation
|
72
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+
tolerance = 0.05 # 5% inaccuracy is tolerated in tests below
|
73
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+
interpolator_type = GSL::Interp2d::BICUBIC
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74
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+
|
75
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+
i2d = GSL::Interp2d.alloc(interpolator_type, @x_array, @y_array, @z_array)
|
76
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+
|
77
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+
# confirm that the fit passes very close to the sampled data points
|
78
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@x_array.each do |x|
|
79
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+
@y_array.each do |y|
|
80
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+
expected_z = saddle(x,y)
|
81
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+
z = i2d.eval(@x_array, @y_array, @z_array, x, y)
|
82
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+
error = (z - expected_z).abs
|
83
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+
max_error = (expected_z.abs)*tolerance
|
84
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if max_error == 0
|
85
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+
max_error = tolerance
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86
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+
end
|
87
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+
refute error > max_error, "error @ sample #{x},#{y} z: #{z} expected_z: #{expected_z}"
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88
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+
end
|
89
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+
end
|
90
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+
|
91
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interstitial_x_values = @x_array.to_a.first(@x_array.size-1).map {|v| v+ 0.5}
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92
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+
interstitial_y_values = @y_array.to_a.first(@y_array.size-1).map {|v| v+ 0.3}
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93
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+
|
94
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# confirm that interstitial values are interpolated accurately
|
95
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interstitial_x_values.each do |x|
|
96
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interstitial_y_values.each do |y|
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97
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expected_z = saddle(x,y)
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98
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z = i2d.eval(@x_array, @y_array, @z_array, x,y)
|
99
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error = (z - expected_z).abs
|
100
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max_error = (expected_z.abs)*tolerance
|
101
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if max_error == 0
|
102
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max_error = tolerance
|
103
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end
|
104
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refute error > max_error, "error @ interstitial #{x},#{y}"
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105
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+
end
|
106
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end
|
107
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end
|
108
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end if GSL::GSL_VERSION >= '2.0'
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@@ -0,0 +1,81 @@
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1
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require 'test_helper'
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2
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+
|
3
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+
class Spline2dTest < GSL::TestCase
|
4
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+
def saddle(x,y)
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5
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x*x - y*y
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6
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end
|
7
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+
|
8
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def setup
|
9
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+
x_samples =(-20..20).map(&:to_f).to_a
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10
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+
y_samples = (-20..20).map(&:to_f).to_a
|
11
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+
z_samples = []
|
12
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x_samples.each do |x|
|
13
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y_samples.each do |y|
|
14
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z_samples << saddle(x,y)
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15
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end
|
16
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+
end
|
17
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+
|
18
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+
@x_array = GSL::Vector.alloc(x_samples)
|
19
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+
@y_array = GSL::Vector.alloc(y_samples)
|
20
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+
@z_array = GSL::Vector.alloc(z_samples)
|
21
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+
|
22
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+
@i2d_bicubic = GSL::Spline2d.alloc(GSL::Interp2d::BICUBIC,
|
23
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+
@x_array, @y_array, @z_array)
|
24
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+
|
25
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+
@i2d_bilinear = GSL::Spline2d.alloc(GSL::Interp2d::BILINEAR,
|
26
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+
@x_array, @y_array, @z_array)
|
27
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+
end
|
28
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+
|
29
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+
def test_info
|
30
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+
str = <<-EOF
|
31
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+
Class: GSL::Spline2d
|
32
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+
SuperClass: GSL::Object
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33
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+
Type: bilinear
|
34
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+
xmin: -20.000000
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35
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xmax: 20.000000
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36
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ymin: -20.000000
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37
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ymax: 20.000000
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38
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+
xSize: 41
|
39
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+
ySize: 41
|
40
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+
EOF
|
41
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assert_equal str, @i2d_bilinear.info
|
42
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+
end
|
43
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+
|
44
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+
def test_use_case_saddle_interpolation
|
45
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+
tolerance = 0.05 # 5% inaccuracy is tolerated in tests below
|
46
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+
interpolator_type = GSL::Interp2d::BICUBIC
|
47
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+
|
48
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+
i2d = GSL::Spline2d.alloc(interpolator_type, @x_array, @y_array, @z_array)
|
49
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+
|
50
|
+
# confirm that the fit passes very close to the sampled data points
|
51
|
+
@x_array.each do |x|
|
52
|
+
@y_array.each do |y|
|
53
|
+
expected_z = saddle(x,y)
|
54
|
+
z = i2d.eval(x, y)
|
55
|
+
error = (z - expected_z).abs
|
56
|
+
max_error = (expected_z.abs)*tolerance
|
57
|
+
if max_error == 0
|
58
|
+
max_error = tolerance
|
59
|
+
end
|
60
|
+
refute error > max_error, "error @ sample #{x},#{y} z: #{z} expected_z: #{expected_z}"
|
61
|
+
end
|
62
|
+
end
|
63
|
+
|
64
|
+
interstitial_x_values = @x_array.to_a.first(@x_array.size-1).map {|v| v+ 0.5}
|
65
|
+
interstitial_y_values = @y_array.to_a.first(@y_array.size-1).map {|v| v+ 0.3}
|
66
|
+
|
67
|
+
# confirm that interstitial values are interpolated accurately
|
68
|
+
interstitial_x_values.each do |x|
|
69
|
+
interstitial_y_values.each do |y|
|
70
|
+
expected_z = saddle(x,y)
|
71
|
+
z = i2d.eval(x,y)
|
72
|
+
error = (z - expected_z).abs
|
73
|
+
max_error = (expected_z.abs)*tolerance
|
74
|
+
if max_error == 0
|
75
|
+
max_error = tolerance
|
76
|
+
end
|
77
|
+
refute error > max_error, "error @ interstitial #{x},#{y}"
|
78
|
+
end
|
79
|
+
end
|
80
|
+
end
|
81
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+
end if GSL::GSL_VERSION >= '2.0'
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: gsl
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 2.1.0.
|
4
|
+
version: 2.1.0.2
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Yoshiki Tsunesada
|
@@ -11,7 +11,7 @@ authors:
|
|
11
11
|
autorequire:
|
12
12
|
bindir: bin
|
13
13
|
cert_chain: []
|
14
|
-
date:
|
14
|
+
date: 2017-01-30 00:00:00.000000000 Z
|
15
15
|
dependencies:
|
16
16
|
- !ruby/object:Gem::Dependency
|
17
17
|
name: rake-compiler
|
@@ -76,118 +76,120 @@ executables: []
|
|
76
76
|
extensions:
|
77
77
|
- ext/gsl_native/extconf.rb
|
78
78
|
extra_rdoc_files:
|
79
|
-
- rdoc/
|
80
|
-
- rdoc/
|
79
|
+
- rdoc/interp2d.rdoc
|
80
|
+
- rdoc/ehandling.rdoc
|
81
|
+
- rdoc/integration.rdoc
|
82
|
+
- rdoc/sort.rdoc
|
81
83
|
- rdoc/multiroot.rdoc
|
82
|
-
- rdoc/function.rdoc
|
83
|
-
- rdoc/ref.rdoc
|
84
84
|
- rdoc/stats.rdoc
|
85
|
-
- rdoc/hist3d.rdoc
|
86
|
-
- rdoc/sf.rdoc
|
87
|
-
- rdoc/monte.rdoc
|
88
|
-
- rdoc/tut.rdoc
|
89
85
|
- rdoc/bspline.rdoc
|
90
|
-
- rdoc/
|
86
|
+
- rdoc/hist.rdoc
|
87
|
+
- rdoc/wavelet.rdoc
|
88
|
+
- rdoc/function.rdoc
|
89
|
+
- rdoc/use.rdoc
|
90
|
+
- rdoc/const.rdoc
|
91
|
+
- rdoc/interp.rdoc
|
92
|
+
- rdoc/hist2d.rdoc
|
93
|
+
- rdoc/vector.rdoc
|
94
|
+
- rdoc/tensor.rdoc
|
95
|
+
- rdoc/poly.rdoc
|
96
|
+
- rdoc/linalg_complex.rdoc
|
97
|
+
- rdoc/sum.rdoc
|
98
|
+
- rdoc/siman.rdoc
|
91
99
|
- rdoc/multimin.rdoc
|
92
|
-
- rdoc/
|
93
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+
- tmp/x86_64-linux/stage/rdoc/ndlinear.rdoc
|
855
|
+
- tmp/x86_64-linux/stage/rdoc/nmatrix.rdoc
|
856
|
+
- tmp/x86_64-linux/stage/rdoc/nonlinearfit.rdoc
|
857
|
+
- tmp/x86_64-linux/stage/rdoc/ntuple.rdoc
|
858
|
+
- tmp/x86_64-linux/stage/rdoc/odeiv.rdoc
|
859
|
+
- tmp/x86_64-linux/stage/rdoc/perm.rdoc
|
860
|
+
- tmp/x86_64-linux/stage/rdoc/poly.rdoc
|
861
|
+
- tmp/x86_64-linux/stage/rdoc/qrng.rdoc
|
862
|
+
- tmp/x86_64-linux/stage/rdoc/randist.rdoc
|
863
|
+
- tmp/x86_64-linux/stage/rdoc/ref.rdoc
|
864
|
+
- tmp/x86_64-linux/stage/rdoc/rng.rdoc
|
865
|
+
- tmp/x86_64-linux/stage/rdoc/roots.rdoc
|
866
|
+
- tmp/x86_64-linux/stage/rdoc/sf.rdoc
|
867
|
+
- tmp/x86_64-linux/stage/rdoc/siman.rdoc
|
868
|
+
- tmp/x86_64-linux/stage/rdoc/sort.rdoc
|
869
|
+
- tmp/x86_64-linux/stage/rdoc/start.rdoc
|
870
|
+
- tmp/x86_64-linux/stage/rdoc/stats.rdoc
|
871
|
+
- tmp/x86_64-linux/stage/rdoc/sum.rdoc
|
872
|
+
- tmp/x86_64-linux/stage/rdoc/tensor.rdoc
|
873
|
+
- tmp/x86_64-linux/stage/rdoc/tut.rdoc
|
874
|
+
- tmp/x86_64-linux/stage/rdoc/use.rdoc
|
875
|
+
- tmp/x86_64-linux/stage/rdoc/vector.rdoc
|
876
|
+
- tmp/x86_64-linux/stage/rdoc/vector_complex.rdoc
|
877
|
+
- tmp/x86_64-linux/stage/rdoc/wavelet.rdoc
|
868
878
|
- uncrustify.cfg
|
869
879
|
homepage: http://github.com/SciRuby/rb-gsl
|
870
880
|
licenses:
|
@@ -876,7 +886,7 @@ post_install_message: "\n gsl can be installed with or without narray support
|
|
876
886
|
gsl.\n "
|
877
887
|
rdoc_options:
|
878
888
|
- "--title"
|
879
|
-
- Ruby/GSL (2.1.0.
|
889
|
+
- Ruby/GSL (2.1.0.2)
|
880
890
|
- "--charset"
|
881
891
|
- UTF-8
|
882
892
|
- "--line-numbers"
|
@@ -900,7 +910,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
900
910
|
requirements:
|
901
911
|
- GSL (http://www.gnu.org/software/gsl/)
|
902
912
|
rubyforge_project:
|
903
|
-
rubygems_version: 2.5.
|
913
|
+
rubygems_version: 2.5.2
|
904
914
|
signing_key:
|
905
915
|
specification_version: 4
|
906
916
|
summary: Ruby interface to the GNU Scientific Library
|