gs2crmod 0.11.84 → 0.11.85

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: afe9bc09c0cb05b8fe04ad88092ced9c58e3c0cf
-  data.tar.gz: d3b86651715e91ada6e8b653caed22f6bbd19e35
+  metadata.gz: 7940a19eb719531ed06ee4b1e898068b7e8d2ab0
+  data.tar.gz: 083c2ab1b9205a6a374f91952f6ce78f7cac3786
 SHA512:
-  metadata.gz: c95f84c4a41d777f8c9c0bfe20117b585b441b625d670ce8580cfcbdc47afc6b23e627e7d81c1a52c6197343605da6f2ff53a518ee993beb90ce23f4dc8904f8
-  data.tar.gz: f5177255f69673f67065f7c2b7e37d1dd5475ec4395e47323363f3cd3802ef4c49eb5ba18448264a9b4eab000eec354120cdf6874a76ecbfc7015540c165e7c1
+  metadata.gz: f4efdf8ba32a8f97ad52938d4ab35538cb05ae44018d1d6632cd2b3dbe6097b98ef578209483f526c5c77c727991def361407f348f09b4b1556dcbc8e01945c8
+  data.tar.gz: f3269ef0b4d623b45296f11f283c6ad822d387b11349172720228330858ec495103f694c3715c1e36fa5d55f7f7a2503e7673015f49a5722c9fcdf70264fe56e

data/VERSION

@@ -1 +1 @@
-0.11.84
+0.11.85

data/gs2crmod.gemspec

@@ -2,17 +2,17 @@
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: gs2crmod 0.11.84 ruby lib
+# stub: gs2crmod 0.11.85 ruby lib
 # stub: ext/extconf.rb
 
 Gem::Specification.new do |s|
   s.name = "gs2crmod"
-  s.version = "0.11.84"
+  s.version = "0.11.85"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib"]
   s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
-  s.date = "2014-12-19"
+  s.date = "2015-01-06"
   s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
   s.email = "edmundhighcock@sourceforge.net"
   s.extensions = ["ext/extconf.rb"]

data/lib/gs2crmod/gs2.rb

@@ -1122,64 +1122,67 @@ attr_accessor :iphi00, :saturation_time #Necessary for back. comp. due to an old
 
 folder = File.dirname(File.expand_path(__FILE__)) # i.e. the directory this file is in
 
-SPECIES_DEPENDENT_NAMELISTS = eval(File.read(folder + '/species_dependent_namelists.rb'), binding, folder + '/species_dependent_namelists.rb')
-#
-SPECIES_DEPENDENT_VARIABLES_WITH_HELP = SPECIES_DEPENDENT_NAMELISTS.values.inject({}) do |hash, namelist_hash|
-  namelist_hash[:variables].each do |var, var_hash|
-      hash[var] = var_hash[:help]
-  end
-  hash
-end
+  SPECIES_DEPENDENT_NAMELISTS = eval(File.read(folder + '/species_dependent_namelists.rb'), binding, folder + '/species_dependent_namelists.rb')
 
-SPECIES_DEPENDENT_VARIABLES = SPECIES_DEPENDENT_VARIABLES_WITH_HELP.keys
-SPECIES_DEPENDENT_VARIABLES.each{|var| attr_accessor var} # for backwards compatibility
-
-['i', 'e'].each do |n|
-  SPECIES_DEPENDENT_VARIABLES_WITH_HELP.each do |name, help|
-    attr_accessor name + "_#{n}".to_sym #for backwards compatibility
+  SPECIES_DEPENDENT_VARIABLES_WITH_HELP = SPECIES_DEPENDENT_NAMELISTS.values.inject({}) do |hash, namelist_hash|
+    namelist_hash[:variables].each do |var, var_hash|
+        hash[var] = var_hash[:help]
+    end
+    hash
   end
-end
-
-old_vars = %w[
-  :TiTe
-  :Rmaj
-  :R_geo
-  :invLp_input
-  :D_hypervisc
-  :D_hyperres
-  :D_hyper
-  :C_par
-  :C_perp
-].map{|n| n.to_s.sub(/^:/, '').to_sym}
-
-old_vars.each do |var|
-  alias_method(var, var.to_s.downcase.to_sym)
-  alias_method("#{var}=".to_sym, "#{var.downcase}=".to_sym)
-end
-
 
+  SPECIES_DEPENDENT_VARIABLES = SPECIES_DEPENDENT_VARIABLES_WITH_HELP.keys
+  SPECIES_DEPENDENT_VARIABLES.each{|var| attr_accessor var} # for backwards compatibility
 
+  ['i', 'e'].each do |n|
+    SPECIES_DEPENDENT_VARIABLES_WITH_HELP.each do |name, help|
+      attr_accessor name + "_#{n}".to_sym #for backwards compatibility
+    end
+  end
 
-def run_namelist_backwards_compatibility
-  SPECIES_DEPENDENT_VARIABLES.each do |var|
-    set(var + "_1".to_sym, (send(var + "_1".to_sym) or send(var + "_i".to_sym) or send(var)))
-    set(var + "_2".to_sym, (send(var + "_2".to_sym) or send(var + "_e".to_sym)))
+  old_vars = %w[
+    :TiTe
+    :Rmaj
+    :R_geo
+    :invLp_input
+    :D_hypervisc
+    :D_hyperres
+    :D_hyper
+    :C_par
+    :C_perp
+  ].map{|n| n.to_s.sub(/^:/, '').to_sym}
+
+  old_vars.each do |var|
+    alias_method(var, var.to_s.downcase.to_sym)
+    alias_method("#{var}=".to_sym, "#{var.downcase}=".to_sym)
   end
-end
 
+  def run_namelist_backwards_compatibility
+    SPECIES_DEPENDENT_VARIABLES.each do |var|
+      set(var + "_1".to_sym, (send(var + "_1".to_sym) or send(var + "_i".to_sym) or send(var)))
+      set(var + "_2".to_sym, (send(var + "_2".to_sym) or send(var + "_e".to_sym)))
+    end
+  end
 
-def stop
-  `touch #@directory/#@run_name.stop`
-end
+  def stop
+    `touch #@directory/#@run_name.stop`
+  end
 
   def vim_output
     system "vim -Ro #{output_file} #{error_file} #@directory/#@run_name.error #@directory/#@run_name.out "
   end
   alias :vo :vim_output
+
+  def vim_input
+    system "vim -Ro #@directory/#@run_name.in "
+  end
+  alias :vi :vim_input
+
   def vim_stdout
     system "vim -Ro #{output_file} "
   end
   alias :vo1 :vim_stdout
+
   def plot_efit_file
     Dir.chdir(@directory) do
       text = File.read(@eqfile)

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: gs2crmod
 version: !ruby/object:Gem::Version
-  version: 0.11.84
+  version: 0.11.85
 platform: ruby
 authors:
 - Edmund Highcock
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-12-19 00:00:00.000000000 Z
+date: 2015-01-06 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: coderunner