gs2crmod 0.10.25 → 0.10.26

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data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.10.25
1
+ 0.10.26
data/gs2crmod.gemspec CHANGED
@@ -5,11 +5,11 @@
5
5
 
6
6
  Gem::Specification.new do |s|
7
7
  s.name = "gs2crmod"
8
- s.version = "0.10.25"
8
+ s.version = "0.10.26"
9
9
 
10
10
  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
11
11
  s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
12
- s.date = "2013-12-18"
12
+ s.date = "2013-12-19"
13
13
  s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
14
14
  s.email = "edmundhighcock@sourceforge.net"
15
15
  s.extensions = ["ext/extconf.rb"]
@@ -1682,6 +1682,17 @@
1682
1682
  :type=>:String,
1683
1683
  :text_options=>["default", "implicit", "explicit", "test"],
1684
1684
  :module=>:fields},
1685
+ :field_subgath=>
1686
+ {:should_include=>"true",
1687
+ :description=>
1688
+ "Set to TRUE to use allgatherv to fetch part of the field update calculated on other procs. FALSE uses a sum_allreduce instead.",
1689
+ :help=>"",
1690
+ :code_name=>:unbalanced_xxf,
1691
+ :must_pass=>
1692
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
1693
+ :explanation=>
1694
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
1695
+ :type=>:Fortran_Bool},
1685
1696
  :remove_zonal_flows_switch=>
1686
1697
  {:should_include=>"true",
1687
1698
  :description=>"Delete zonal flows at every timestep.",
@@ -2001,7 +2012,7 @@
2001
2012
  :unbalanced_xxf=>
2002
2013
  {:should_include=>"true",
2003
2014
  :description=>
2004
- "An optimised layout made by Adrian Jackson..please add better help!",
2015
+ "This allows GS2 to set up an unbalanced xxf processor grid (e.g. leaving some tasks with no work) in order to balance the work load on each.",
2005
2016
  :help=>"",
2006
2017
  :code_name=>:unbalanced_xxf,
2007
2018
  :must_pass=>
@@ -2012,7 +2023,7 @@
2012
2023
  :max_unbalanced_xxf=>
2013
2024
  {:should_include=>"true",
2014
2025
  :description=>
2015
- "An optimised layout made by Adrian Jackson..please add better help!",
2026
+ "This sets the maximum level of difference between the largest and smallest block sizes. Must be between 0 and 1",
2016
2027
  :help=>"",
2017
2028
  :code_name=>:max_unbalanced_xxf,
2018
2029
  :must_pass=>
@@ -2023,7 +2034,7 @@
2023
2034
  :unbalanced_yxf=>
2024
2035
  {:should_include=>"true",
2025
2036
  :description=>
2026
- "An optimised layout made by Adrian Jackson..please add better help!",
2037
+ "This allows GS2 to set up an unbalanced yxxf processor grid (e.g. leaving some tasks with no work) in order to balance the work load on each.",
2027
2038
  :help=>"",
2028
2039
  :code_name=>:unbalanced_yxf,
2029
2040
  :must_pass=>
@@ -2034,7 +2045,7 @@
2034
2045
  :max_unbalanced_yxf=>
2035
2046
  {:should_include=>"true",
2036
2047
  :description=>
2037
- "An optimised layout made by Adrian Jackson..please add better help!",
2048
+ "This sets the maximum level of difference between the largest and smallest block sizes. Must be between 0 and 1",
2038
2049
  :help=>"",
2039
2050
  :code_name=>:max_unbalanced_yxf,
2040
2051
  :must_pass=>
@@ -2042,6 +2053,50 @@
2042
2053
  :explanation=>
2043
2054
  "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
2044
2055
  :type=>:Float},
2056
+ :opt_redist_nbk=>
2057
+ {:should_include=>"true",
2058
+ :description=>
2059
+ "This enables the use of non-blocking communication in redistribute routines.",
2060
+ :help=>"",
2061
+ :code_name=>:opt_redist_nbk,
2062
+ :must_pass=>
2063
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
2064
+ :explanation=>
2065
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
2066
+ :type=>:Fortran_Bool},
2067
+ :opt_redist_init=>
2068
+ {:should_include=>"true",
2069
+ :description=>
2070
+ "This enables optimized initialization routines for creating redistribution objects.",
2071
+ :help=>"",
2072
+ :code_name=>:opt_redist_init,
2073
+ :must_pass=>
2074
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
2075
+ :explanation=>
2076
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
2077
+ :type=>:Fortran_Bool},
2078
+ :intmom_sub=>
2079
+ {:should_include=>"true",
2080
+ :description=>
2081
+ "This enables use of sub-communicators to do reduction associated with calculation of moments of distribution function. Most advantageous for collisional runs without LE layouts.",
2082
+ :help=>"",
2083
+ :code_name=>:intmom_sub,
2084
+ :must_pass=>
2085
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
2086
+ :explanation=>
2087
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
2088
+ :type=>:Fortran_Bool},
2089
+ :intspec_sub=>
2090
+ {:should_include=>"true",
2091
+ :description=>
2092
+ "This enables use of sub-communicators to do reduction associated with calculation of species integrated moments of distribution function.",
2093
+ :help=>"",
2094
+ :code_name=>:intspec_sub,
2095
+ :must_pass=>
2096
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
2097
+ :explanation=>
2098
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
2099
+ :type=>:Fortran_Bool},
2045
2100
  :opt_local_copy=>
2046
2101
  {:should_include=>"true",
2047
2102
  :description=>"A recent optimisation ..please add better help!",
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: gs2crmod
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.10.25
4
+ version: 0.10.26
5
5
  prerelease:
6
6
  platform: ruby
7
7
  authors:
@@ -10,11 +10,11 @@ authors:
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  autorequire:
11
11
  bindir: bin
12
12
  cert_chain: []
13
- date: 2013-12-18 00:00:00.000000000 Z
13
+ date: 2013-12-19 00:00:00.000000000 Z
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: coderunner
17
- requirement: &14540380 !ruby/object:Gem::Requirement
17
+ requirement: &7011120 !ruby/object:Gem::Requirement
18
18
  none: false
19
19
  requirements:
20
20
  - - ! '>='
@@ -22,10 +22,10 @@ dependencies:
22
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  version: 0.13.13
23
23
  type: :runtime
24
24
  prerelease: false
25
- version_requirements: *14540380
25
+ version_requirements: *7011120
26
26
  - !ruby/object:Gem::Dependency
27
27
  name: rubyhacks
28
- requirement: &14539860 !ruby/object:Gem::Requirement
28
+ requirement: &7009140 !ruby/object:Gem::Requirement
29
29
  none: false
30
30
  requirements:
31
31
  - - ! '>='
@@ -33,10 +33,10 @@ dependencies:
33
33
  version: 0.1.2
34
34
  type: :runtime
35
35
  prerelease: false
36
- version_requirements: *14539860
36
+ version_requirements: *7009140
37
37
  - !ruby/object:Gem::Dependency
38
38
  name: shoulda
39
- requirement: &14539280 !ruby/object:Gem::Requirement
39
+ requirement: &7005760 !ruby/object:Gem::Requirement
40
40
  none: false
41
41
  requirements:
42
42
  - - ! '>='
@@ -44,10 +44,10 @@ dependencies:
44
44
  version: '0'
45
45
  type: :development
46
46
  prerelease: false
47
- version_requirements: *14539280
47
+ version_requirements: *7005760
48
48
  - !ruby/object:Gem::Dependency
49
49
  name: rdoc
50
- requirement: &14538800 !ruby/object:Gem::Requirement
50
+ requirement: &7004440 !ruby/object:Gem::Requirement
51
51
  none: false
52
52
  requirements:
53
53
  - - ~>
@@ -55,10 +55,10 @@ dependencies:
55
55
  version: '3.12'
56
56
  type: :development
57
57
  prerelease: false
58
- version_requirements: *14538800
58
+ version_requirements: *7004440
59
59
  - !ruby/object:Gem::Dependency
60
60
  name: bundler
61
- requirement: &14538280 !ruby/object:Gem::Requirement
61
+ requirement: &7020320 !ruby/object:Gem::Requirement
62
62
  none: false
63
63
  requirements:
64
64
  - - ! '>'
@@ -66,10 +66,10 @@ dependencies:
66
66
  version: 1.0.0
67
67
  type: :development
68
68
  prerelease: false
69
- version_requirements: *14538280
69
+ version_requirements: *7020320
70
70
  - !ruby/object:Gem::Dependency
71
71
  name: jeweler
72
- requirement: &14537780 !ruby/object:Gem::Requirement
72
+ requirement: &7018240 !ruby/object:Gem::Requirement
73
73
  none: false
74
74
  requirements:
75
75
  - - ! '>='
@@ -77,7 +77,7 @@ dependencies:
77
77
  version: 1.8.4
78
78
  type: :development
79
79
  prerelease: false
80
- version_requirements: *14537780
80
+ version_requirements: *7018240
81
81
  description: GS2 is a gyrokinetic flux tube initial value turbulence code which can
82
82
  be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated
83
83
  running and analysis of large simulations. This module allows GS2 (and its sister