gs2crmod 0.10.25 → 0.10.26

data/VERSION

@@ -1 +1 @@
-0.10.25
+0.10.26

data/gs2crmod.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "gs2crmod"
-  s.version = "0.10.25"
+  s.version = "0.10.26"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
-  s.date = "2013-12-18"
+  s.date = "2013-12-19"
   s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
   s.email = "edmundhighcock@sourceforge.net"
   s.extensions = ["ext/extconf.rb"]

data/lib/gs2crmod/namelists.rb

@@ -1682,6 +1682,17 @@
        :type=>:String,
        :text_options=>["default", "implicit", "explicit", "test"],
        :module=>:fields},
+     :field_subgath=>
+      {:should_include=>"true",
+       :description=>
+        "Set to TRUE to use allgatherv to fetch part of the field update calculated on other procs. FALSE uses a sum_allreduce instead.",
+       :help=>"",
+       :code_name=>:unbalanced_xxf,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
      :remove_zonal_flows_switch=>
       {:should_include=>"true",
        :description=>"Delete zonal flows at every timestep.",
@@ -2001,7 +2012,7 @@
      :unbalanced_xxf=>
       {:should_include=>"true",
        :description=>
-        "An optimised layout made by Adrian Jackson..please add better help!",
+        "This allows GS2 to set up an unbalanced xxf processor grid (e.g. leaving some tasks with no work) in order to balance the work load on each.",
        :help=>"",
        :code_name=>:unbalanced_xxf,
        :must_pass=>
@@ -2012,7 +2023,7 @@
      :max_unbalanced_xxf=>
       {:should_include=>"true",
        :description=>
-        "An optimised layout made by Adrian Jackson..please add better help!",
+        "This sets the maximum level of difference between the largest and smallest block sizes. Must be between 0 and 1",
        :help=>"",
        :code_name=>:max_unbalanced_xxf,
        :must_pass=>
@@ -2023,7 +2034,7 @@
      :unbalanced_yxf=>
       {:should_include=>"true",
        :description=>
-        "An optimised layout made by Adrian Jackson..please add better help!",
+        "This allows GS2 to set up an unbalanced yxxf processor grid (e.g. leaving some tasks with no work) in order to balance the work load on each.",
        :help=>"",
        :code_name=>:unbalanced_yxf,
        :must_pass=>
@@ -2034,7 +2045,7 @@
      :max_unbalanced_yxf=>
       {:should_include=>"true",
        :description=>
-        "An optimised layout made by Adrian Jackson..please add better help!",
+        "This sets the maximum level of difference between the largest and smallest block sizes. Must be between 0 and 1",
        :help=>"",
        :code_name=>:max_unbalanced_yxf,
        :must_pass=>
@@ -2042,6 +2053,50 @@
           :explanation=>
            "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
        :type=>:Float},
+     :opt_redist_nbk=>
+      {:should_include=>"true",
+       :description=>
+        "This enables the use of non-blocking communication in redistribute routines.",
+       :help=>"",
+       :code_name=>:opt_redist_nbk,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :opt_redist_init=>
+      {:should_include=>"true",
+       :description=>
+        "This enables optimized initialization routines for creating redistribution objects.",
+       :help=>"",
+       :code_name=>:opt_redist_init,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :intmom_sub=>
+      {:should_include=>"true",
+       :description=>
+        "This enables use of sub-communicators to do reduction associated with calculation of moments of distribution function. Most advantageous for collisional runs without LE layouts.",
+       :help=>"",
+       :code_name=>:intmom_sub,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :intspec_sub=>
+      {:should_include=>"true",
+       :description=>
+        "This enables use of sub-communicators to do reduction associated with calculation of species integrated moments of distribution function.",
+       :help=>"",
+       :code_name=>:intspec_sub,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
      :opt_local_copy=>
       {:should_include=>"true",
        :description=>"A recent optimisation ..please add better help!",

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: gs2crmod
 version: !ruby/object:Gem::Version
-  version: 0.10.25
+  version: 0.10.26
   prerelease: 
 platform: ruby
 authors:
@@ -10,11 +10,11 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-12-18 00:00:00.000000000 Z
+date: 2013-12-19 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: coderunner
-  requirement: &14540380 !ruby/object:Gem::Requirement
+  requirement: &7011120 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -22,10 +22,10 @@ dependencies:
         version: 0.13.13
   type: :runtime
   prerelease: false
-  version_requirements: *14540380
+  version_requirements: *7011120
 - !ruby/object:Gem::Dependency
   name: rubyhacks
-  requirement: &14539860 !ruby/object:Gem::Requirement
+  requirement: &7009140 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -33,10 +33,10 @@ dependencies:
         version: 0.1.2
   type: :runtime
   prerelease: false
-  version_requirements: *14539860
+  version_requirements: *7009140
 - !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &14539280 !ruby/object:Gem::Requirement
+  requirement: &7005760 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -44,10 +44,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *14539280
+  version_requirements: *7005760
 - !ruby/object:Gem::Dependency
   name: rdoc
-  requirement: &14538800 !ruby/object:Gem::Requirement
+  requirement: &7004440 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -55,10 +55,10 @@ dependencies:
         version: '3.12'
   type: :development
   prerelease: false
-  version_requirements: *14538800
+  version_requirements: *7004440
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &14538280 !ruby/object:Gem::Requirement
+  requirement: &7020320 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>'
@@ -66,10 +66,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *14538280
+  version_requirements: *7020320
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &14537780 !ruby/object:Gem::Requirement
+  requirement: &7018240 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -77,7 +77,7 @@ dependencies:
         version: 1.8.4
   type: :development
   prerelease: false
-  version_requirements: *14537780
+  version_requirements: *7018240
 description: GS2 is a gyrokinetic flux tube initial value turbulence code which can
   be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated
   running and analysis of large simulations. This module allows GS2 (and its sister