gs2crmod 0.11.22 → 0.11.23

data/VERSION

@@ -1 +1 @@
-0.11.22
+0.11.23

data/gs2crmod.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "gs2crmod"
-  s.version = "0.11.22"
+  s.version = "0.11.23"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
-  s.date = "2014-03-06"
+  s.date = "2014-03-11"
   s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
   s.email = "edmundhighcock@sourceforge.net"
   s.extensions = ["ext/extconf.rb"]

data/lib/gs2crmod/calculations.rb

@@ -686,6 +686,7 @@ def calculate_transient_amplification(vector, options={})
 	#ep "vector[0..5]: #{vector.subvector(0,5)}\n"
 	#return Math.sqrt(vector[turning_points[:first_max]]/@phiinit)
 	#return vector.max/@phiinit
+  vector[0] = 0 # This ensures vector.max does not return 1st point for no transient growth
 	return vector.max/vector[1]
 end
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: gs2crmod
 version: !ruby/object:Gem::Version
-  version: 0.11.22
+  version: 0.11.23
   prerelease: 
 platform: ruby
 authors:
@@ -10,11 +10,11 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-03-06 00:00:00.000000000 Z
+date: 2014-03-11 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: coderunner
-  requirement: &15259680 !ruby/object:Gem::Requirement
+  requirement: &21764240 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -22,10 +22,10 @@ dependencies:
         version: 0.14.10
   type: :runtime
   prerelease: false
-  version_requirements: *15259680
+  version_requirements: *21764240
 - !ruby/object:Gem::Dependency
   name: rubyhacks
-  requirement: &15258540 !ruby/object:Gem::Requirement
+  requirement: &21763600 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -33,10 +33,10 @@ dependencies:
         version: 0.1.2
   type: :runtime
   prerelease: false
-  version_requirements: *15258540
+  version_requirements: *21763600
 - !ruby/object:Gem::Dependency
   name: ruby-netcdf-updated
-  requirement: &15257880 !ruby/object:Gem::Requirement
+  requirement: &21762820 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -44,10 +44,10 @@ dependencies:
         version: 0.6.6.1
   type: :runtime
   prerelease: false
-  version_requirements: *15257880
+  version_requirements: *21762820
 - !ruby/object:Gem::Dependency
   name: shoulda
-  requirement: &15257060 !ruby/object:Gem::Requirement
+  requirement: &21762200 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -55,10 +55,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *15257060
+  version_requirements: *21762200
 - !ruby/object:Gem::Dependency
   name: rdoc
-  requirement: &15256460 !ruby/object:Gem::Requirement
+  requirement: &21817460 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ~>
@@ -66,10 +66,10 @@ dependencies:
         version: '3.12'
   type: :development
   prerelease: false
-  version_requirements: *15256460
+  version_requirements: *21817460
 - !ruby/object:Gem::Dependency
   name: bundler
-  requirement: &15255920 !ruby/object:Gem::Requirement
+  requirement: &21816320 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>'
@@ -77,10 +77,10 @@ dependencies:
         version: 1.0.0
   type: :development
   prerelease: false
-  version_requirements: *15255920
+  version_requirements: *21816320
 - !ruby/object:Gem::Dependency
   name: jeweler
-  requirement: &15255380 !ruby/object:Gem::Requirement
+  requirement: &21815240 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -88,7 +88,7 @@ dependencies:
         version: 1.8.4
   type: :development
   prerelease: false
-  version_requirements: *15255380
+  version_requirements: *21815240
 description: GS2 is a gyrokinetic flux tube initial value turbulence code which can
   be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated
   running and analysis of large simulations. This module allows GS2 (and its sister