graph_matching 0.1.0 → 0.1.1

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Files changed (67) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +6 -0
  3. data/graph_matching.gemspec +13 -11
  4. data/lib/graph_matching/version.rb +1 -1
  5. metadata +2 -77
  6. data/benchmark/mcm_bipartite/complete_bigraphs/benchmark.rb +0 -33
  7. data/benchmark/mcm_bipartite/complete_bigraphs/compare.gnuplot +0 -19
  8. data/benchmark/mcm_bipartite/complete_bigraphs/edges_times_vertexes.data +0 -500
  9. data/benchmark/mcm_bipartite/complete_bigraphs/plot.gnuplot +0 -21
  10. data/benchmark/mcm_bipartite/complete_bigraphs/plot.png +0 -0
  11. data/benchmark/mcm_bipartite/complete_bigraphs/time.data +0 -499
  12. data/benchmark/mcm_general/complete_graphs/benchmark.rb +0 -30
  13. data/benchmark/mcm_general/complete_graphs/plot.gnuplot +0 -19
  14. data/benchmark/mcm_general/complete_graphs/plot.png +0 -0
  15. data/benchmark/mcm_general/complete_graphs/time.data +0 -499
  16. data/benchmark/mcm_general/complete_graphs/v_cubed.data +0 -500
  17. data/benchmark/mwm_bipartite/complete_bigraphs/benchmark.rb +0 -43
  18. data/benchmark/mwm_bipartite/complete_bigraphs/nmN.data +0 -499
  19. data/benchmark/mwm_bipartite/complete_bigraphs/nmN.xlsx +0 -0
  20. data/benchmark/mwm_bipartite/complete_bigraphs/plot.gnuplot +0 -22
  21. data/benchmark/mwm_bipartite/complete_bigraphs/plot.png +0 -0
  22. data/benchmark/mwm_bipartite/complete_bigraphs/time.data +0 -299
  23. data/benchmark/mwm_bipartite/misc/calc_d2/benchmark.rb +0 -25
  24. data/benchmark/mwm_general/complete_graphs/benchmark.rb +0 -32
  25. data/benchmark/mwm_general/complete_graphs/compare.gnuplot +0 -19
  26. data/benchmark/mwm_general/complete_graphs/mn_log_n.data +0 -299
  27. data/benchmark/mwm_general/complete_graphs/mn_log_n.xlsx +0 -0
  28. data/benchmark/mwm_general/complete_graphs/plot.gnuplot +0 -22
  29. data/benchmark/mwm_general/complete_graphs/plot.png +0 -0
  30. data/benchmark/mwm_general/complete_graphs/time.data +0 -299
  31. data/benchmark/mwm_general/incomplete_graphs/benchmark.rb +0 -38
  32. data/benchmark/mwm_general/incomplete_graphs/plot.gnuplot +0 -22
  33. data/benchmark/mwm_general/incomplete_graphs/plot.png +0 -0
  34. data/benchmark/mwm_general/incomplete_graphs/time_10_pct.data +0 -299
  35. data/benchmark/mwm_general/incomplete_graphs/time_20_pct.data +0 -299
  36. data/benchmark/mwm_general/incomplete_graphs/time_30_pct.data +0 -299
  37. data/profile/mcm_bipartite/compare.sh +0 -15
  38. data/profile/mcm_bipartite/publish.sh +0 -12
  39. data/profile/mwm_general/compare.sh +0 -15
  40. data/profile/mwm_general/profile.rb +0 -28
  41. data/profile/mwm_general/publish.sh +0 -12
  42. data/research/1965_edmonds.pdf +0 -0
  43. data/research/1975_even_kariv.pdf +0 -0
  44. data/research/1976_gabow.pdf +0 -0
  45. data/research/1980_micali_vazirani.pdf +0 -0
  46. data/research/1985_gabow.pdf +0 -0
  47. data/research/2002_tarjan.pdf +0 -0
  48. data/research/2013_zwick.pdf +0 -0
  49. data/research/examples/unweighted_general/1.txt +0 -86
  50. data/research/goodwin.pdf +0 -0
  51. data/research/kavathekar-scribe.pdf +0 -0
  52. data/research/kusner.pdf +0 -0
  53. data/research/van_rantwijk/mwm_example.py +0 -19
  54. data/research/van_rantwijk/mwmatching.py +0 -945
  55. data/spec/graph_matching/algorithm/matching_algorithm_spec.rb +0 -14
  56. data/spec/graph_matching/algorithm/mcm_bipartite_spec.rb +0 -98
  57. data/spec/graph_matching/algorithm/mcm_general_spec.rb +0 -159
  58. data/spec/graph_matching/algorithm/mwm_bipartite_spec.rb +0 -82
  59. data/spec/graph_matching/algorithm/mwm_general_spec.rb +0 -442
  60. data/spec/graph_matching/graph/bigraph_spec.rb +0 -73
  61. data/spec/graph_matching/graph/graph_spec.rb +0 -53
  62. data/spec/graph_matching/graph/weighted_spec.rb +0 -29
  63. data/spec/graph_matching/integer_vertexes_spec.rb +0 -21
  64. data/spec/graph_matching/matching_spec.rb +0 -89
  65. data/spec/graph_matching/visualize_spec.rb +0 -38
  66. data/spec/graph_matching_spec.rb +0 -9
  67. data/spec/spec_helper.rb +0 -26
checksums.yaml CHANGED
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@@ -3,6 +3,12 @@
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  This project follows [semver 2.0.0][1] and the recommendations
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  of [keepachangelog.com][2].
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+ ## 0.1.1 (2017-05-10)
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+
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+ ### Fixed
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+
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+ - Reduce size of gem by omitting unnecessary files
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+
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  ## 0.1.0 (2017-05-10)
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  ### Breaking Changes
@@ -4,20 +4,22 @@ $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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  require 'graph_matching/version'
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  Gem::Specification.new do |spec|
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- spec.name = 'graph_matching'
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- spec.version = GraphMatching::VERSION
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- spec.authors = ['Jared Beck']
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- spec.email = ['jared@jaredbeck.com']
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- spec.summary = 'Finds maximum matchings in undirected graphs.'
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- spec.description = <<-EOS
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+ spec.name = 'graph_matching'
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+ spec.version = GraphMatching::VERSION
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+ spec.authors = ['Jared Beck']
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+ spec.email = ['jared@jaredbeck.com']
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+ spec.summary = 'Finds maximum matchings in undirected graphs.'
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+ spec.description = <<-EOS
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  Efficient algorithms for maximum cardinality
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  and weighted matchings in undirected graphs.
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  EOS
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- spec.homepage = 'https://github.com/jaredbeck/graph_matching'
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- spec.license = 'MIT'
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- spec.files = `git ls-files -z`.split("\x0")
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- spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
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- spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
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+ spec.homepage = 'https://github.com/jaredbeck/graph_matching'
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+ spec.license = 'MIT'
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+ spec.files = `git ls-files -z`.split("\x0").reject { |f|
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+ f.match(%r{^(benchmark|profile|research|spec)/})
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+ }
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+ spec.executables = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
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+ spec.test_files = spec.files.grep(%r{^(test|spec|features)/})
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  spec.require_paths = ['lib']
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  spec.required_ruby_version = '>= 2.2.0'
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  spec.add_runtime_dependency 'rgl', '~> 0.5.0'
@@ -2,7 +2,7 @@
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  # no-doc
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  module GraphMatching
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- VERSION = '0.1.0'.freeze
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+ VERSION = '0.1.1'.freeze
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  def self.gem_version
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  ::Gem::Version.new(VERSION)
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: graph_matching
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  version: !ruby/object:Gem::Version
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- version: 0.1.0
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+ version: 0.1.1
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  platform: ruby
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  authors:
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  - Jared Beck
@@ -140,37 +140,6 @@ files:
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  - LICENSE.txt
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  - README.md
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  - Rakefile
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- - benchmark/mcm_bipartite/complete_bigraphs/benchmark.rb
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- - benchmark/mcm_bipartite/complete_bigraphs/compare.gnuplot
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- - benchmark/mcm_bipartite/complete_bigraphs/edges_times_vertexes.data
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- - benchmark/mcm_bipartite/complete_bigraphs/plot.gnuplot
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- - benchmark/mcm_bipartite/complete_bigraphs/plot.png
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- - benchmark/mcm_bipartite/complete_bigraphs/time.data
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- - benchmark/mcm_general/complete_graphs/benchmark.rb
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- - benchmark/mcm_general/complete_graphs/plot.gnuplot
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- - benchmark/mcm_general/complete_graphs/plot.png
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- - benchmark/mcm_general/complete_graphs/time.data
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- - benchmark/mcm_general/complete_graphs/v_cubed.data
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- - benchmark/mwm_bipartite/complete_bigraphs/benchmark.rb
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- - benchmark/mwm_bipartite/complete_bigraphs/nmN.data
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- - benchmark/mwm_bipartite/complete_bigraphs/nmN.xlsx
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- - benchmark/mwm_bipartite/complete_bigraphs/plot.gnuplot
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- - benchmark/mwm_bipartite/complete_bigraphs/plot.png
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- - benchmark/mwm_bipartite/complete_bigraphs/time.data
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- - benchmark/mwm_bipartite/misc/calc_d2/benchmark.rb
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- - benchmark/mwm_general/complete_graphs/benchmark.rb
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- - benchmark/mwm_general/complete_graphs/compare.gnuplot
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- - benchmark/mwm_general/complete_graphs/mn_log_n.data
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- - benchmark/mwm_general/complete_graphs/mn_log_n.xlsx
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- - benchmark/mwm_general/complete_graphs/plot.gnuplot
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- - benchmark/mwm_general/complete_graphs/plot.png
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- - benchmark/mwm_general/complete_graphs/time.data
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- - benchmark/mwm_general/incomplete_graphs/benchmark.rb
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- - benchmark/mwm_general/incomplete_graphs/plot.gnuplot
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- - benchmark/mwm_general/incomplete_graphs/plot.png
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- - benchmark/mwm_general/incomplete_graphs/time_10_pct.data
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- - benchmark/mwm_general/incomplete_graphs/time_20_pct.data
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- - benchmark/mwm_general/incomplete_graphs/time_30_pct.data
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  - graph_matching.gemspec
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  - lib/graph_matching.rb
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  - lib/graph_matching/algorithm/matching_algorithm.rb
@@ -193,37 +162,6 @@ files:
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  - lib/graph_matching/ordered_set.rb
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  - lib/graph_matching/version.rb
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  - lib/graph_matching/visualize.rb
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- - profile/mcm_bipartite/compare.sh
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- - profile/mcm_bipartite/publish.sh
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- - profile/mwm_general/compare.sh
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- - profile/mwm_general/profile.rb
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- - profile/mwm_general/publish.sh
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- - research/1965_edmonds.pdf
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- - research/1975_even_kariv.pdf
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- - research/1976_gabow.pdf
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- - research/1980_micali_vazirani.pdf
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- - research/1985_gabow.pdf
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- - research/2002_tarjan.pdf
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- - research/2013_zwick.pdf
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- - research/examples/unweighted_general/1.txt
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- - research/goodwin.pdf
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- - research/kavathekar-scribe.pdf
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- - research/kusner.pdf
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- - research/van_rantwijk/mwm_example.py
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- - research/van_rantwijk/mwmatching.py
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- - spec/graph_matching/algorithm/matching_algorithm_spec.rb
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- - spec/graph_matching/algorithm/mcm_bipartite_spec.rb
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- - spec/graph_matching/algorithm/mcm_general_spec.rb
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- - spec/graph_matching/algorithm/mwm_bipartite_spec.rb
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- - spec/graph_matching/algorithm/mwm_general_spec.rb
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- - spec/graph_matching/graph/bigraph_spec.rb
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- - spec/graph_matching/graph/graph_spec.rb
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- - spec/graph_matching/graph/weighted_spec.rb
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- - spec/graph_matching/integer_vertexes_spec.rb
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- - spec/graph_matching/matching_spec.rb
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- - spec/graph_matching/visualize_spec.rb
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- - spec/graph_matching_spec.rb
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- - spec/spec_helper.rb
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  homepage: https://github.com/jaredbeck/graph_matching
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  licenses:
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  - MIT
@@ -248,17 +186,4 @@ rubygems_version: 2.6.12
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  signing_key:
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  specification_version: 4
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  summary: Finds maximum matchings in undirected graphs.
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- test_files:
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- - spec/graph_matching/algorithm/matching_algorithm_spec.rb
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- - spec/graph_matching/algorithm/mcm_bipartite_spec.rb
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- - spec/graph_matching/algorithm/mcm_general_spec.rb
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- - spec/graph_matching/algorithm/mwm_bipartite_spec.rb
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- - spec/graph_matching/algorithm/mwm_general_spec.rb
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- - spec/graph_matching/graph/bigraph_spec.rb
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- - spec/graph_matching/graph/graph_spec.rb
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- - spec/graph_matching/graph/weighted_spec.rb
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- - spec/graph_matching/integer_vertexes_spec.rb
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- - spec/graph_matching/matching_spec.rb
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- - spec/graph_matching/visualize_spec.rb
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- - spec/graph_matching_spec.rb
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- - spec/spec_helper.rb
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+ test_files: []
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- # encoding: utf-8
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-
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- # No shebang here. Usage:
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- # BM_DIR='benchmark/mcm_bipartite/complete_bigraphs'
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- # ruby -I lib "$BM_DIR/benchmark.rb" > "$BM_DIR/time.data"
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-
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- require 'benchmark'
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- require 'graph_matching'
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-
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- MIN_SIZE = 2
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- MAX_SIZE = 500
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-
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- $stdout.sync = true
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-
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- def complete_bigraph(n)
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- g = GraphMatching::Graph::Bigraph.new
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- max_u = (n.to_f / 2).ceil
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- min_v = max_u + 1
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- 1.upto(max_u) do |i|
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- min_v.upto(n) do |j|
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- g.add_edge(i, j)
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- end
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- end
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- g
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- end
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-
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- MIN_SIZE.upto(MAX_SIZE) do |v|
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- print "%5d\t" % [v]
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- g = complete_bigraph(v)
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- GC.disable
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- puts(Benchmark.realtime { g.maximum_cardinality_matching })
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- GC.enable
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- end
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- data_dir = "~/git/jaredbeck/graph_matching/benchmark/mcm_bipartite/complete_bigraphs"
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-
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- set title "MCM in Complete Bigraph"
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- set key left box
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- set term png size 800, 500
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- set output data_dir."/plot_compare.png"
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-
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- set linetype 1 pointtype 7 linecolor rgb "#FF0000"
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- set linetype 2 pointtype 7 linecolor rgb "#00B800"
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-
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- set xlabel 'Number of Vertexes (n)' textcolor rgb "black"
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- set ytics autofreq textcolor rgb "black"
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- set ylabel 'Time (s)' textcolor rgb "black"
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-
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- plot \
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- data_dir."/time.data" \
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- using 1:2 title "Before" lt 1 axes x1y1, \
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- data_dir."/time2.data" \
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- using 1:2 title "After" lt 2 axes x1y1
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