graph-reader 0.1.0

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data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/

data/CODE_OF_CONDUCT.md

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+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as
+contributors and maintainers pledge to making participation in our project and
+our community a harassment-free experience for everyone, regardless of age, body
+size, disability, ethnicity, gender identity and expression, level of experience,
+nationality, personal appearance, race, religion, or sexual identity and
+orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment
+include:
+
+* Using welcoming and inclusive language
+* Being respectful of differing viewpoints and experiences
+* Gracefully accepting constructive criticism
+* Focusing on what is best for the community
+* Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery and unwelcome sexual attention or
+advances
+* Trolling, insulting/derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or electronic
+  address, without explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable
+behavior and are expected to take appropriate and fair corrective action in
+response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community. Examples of
+representing a project or community include using an official project e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event. Representation of a project may be
+further defined and clarified by project maintainers.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by contacting the project team at shadow3x3x3@gmail.com. All
+complaints will be reviewed and investigated and will result in a response that
+is deemed necessary and appropriate to the circumstances. The project team is
+obligated to maintain confidentiality with regard to the reporter of an incident.
+Further details of specific enforcement policies may be posted separately.
+
+Project maintainers who do not follow or enforce the Code of Conduct in good
+faith may face temporary or permanent repercussions as determined by other
+members of the project's leadership.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,
+available at [http://contributor-covenant.org/version/1/4][version]
+
+[homepage]: http://contributor-covenant.org
+[version]: http://contributor-covenant.org/version/1/4/

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in graph-reader.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2016 shadow3x3x3
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# Graph-Reader
+
+Welcome to your new gem! In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/graph/reader`. To experiment with that code, run `bin/console` for an interactive prompt.
+
+TODO: Delete this and the text above, and describe your gem
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'graph-reader'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install graph-reader
+
+## Usage
+
+TODO: Write usage instructions here
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. You can also run `bin/console` for an interactive prompt that will allow you to experiment.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/graph-reader. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct.
+
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).
+

data/Rakefile

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+require "bundler/gem_tasks"
+task :default => :spec

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "graph/reader"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start

data/bin/setup

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+#!/usr/bin/env bash
+set -euo pipefail
+IFS=$'\n\t'
+set -vx
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/graph-reader.gemspec

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+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "graph-reader"
+  spec.version       = GraphReader::VERSION
+  spec.authors       = ["shadow3x3x3"]
+  spec.email         = ["shadow3x3x3@gmail.com"]
+
+  spec.summary       = %q{Read Nodes and Edges data to Graph}
+  spec.description   = %q{This gem can make Nodes and Edges data that are in txt transforming ruby objects.}
+  spec.homepage      = "https://github.com/shadow3x3x3/graph-reader"
+  spec.license       = "MIT"
+
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) } + Dir['lib/*.rb']
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.13"
+  spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "rspec", "~> 3.0"
+end

data/lib/graph-reader.rb

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+require_relative 'helper/read_helper'
+require_relative 'structure/edge'
+
+module GraphReader
+  class Graph
+    include ReadHelper
+
+    attr_accessor :edges, :nodes, :adj_matrix, :edges_hash
+
+    def initialize(edge_path)
+      raise ArgumentError, "expect (String), got #{edge_path.class}" unless edge_path.instance_of? String
+      @nodes = []
+      @edges = []
+      
+      init_edges(edge_path)
+      
+      @edges_hash = {}
+      set_edges_hash(@edges_hash)
+
+      @adj_map = {}
+      set_adj_map(@adj_map)
+
+      @adj_matrix = init_adj_matrix(@nodes.size)
+      set_adj_matrix(@adj_matrix)
+      @dim = @edges.first.attrs.size
+    end
+    
+    def neighbor?(n1, n2)
+      @adj_matrix[@adj_map[n1]][@adj_map[n2]] == 1
+    end
+
+    private
+
+    def add_node(node)
+      @nodes << node unless @nodes.include?(node)
+    end
+
+    def add_edge(edge)
+      new_edge = Edge.new(edge)
+      unless duplicate_edge?(new_edge)
+        @edges << new_edge
+        add_node(new_edge.src)
+        add_node(new_edge.dst)
+      end
+    end
+
+    def set_edges_hash(e_hash)
+      @edges.each do |edge|
+        e_hash[[edge.src, edge.dst]] = edge
+        e_hash[[edge.dst, edge.src]] = edge
+      end
+    end
+
+    def set_adj_map(adj_map)
+      adj_pos = 0
+      @nodes.each do |n| 
+        adj_map[n] = adj_pos
+        adj_pos += 1
+      end 
+    end
+
+    def init_adj_matrix(size)
+      Array.new(size) { Array.new(size, 0) }
+    end
+
+    def set_adj_matrix(adj_matrix)
+      @edges.each do |e|
+        adj_matrix[@adj_map[e.src]][@adj_map[e.dst]] = 1
+        adj_matrix[@adj_map[e.dst]][@adj_map[e.src]] = 1
+      end
+    end
+
+    def duplicate_edge?(new_edge)
+      @edges.each { |edge| return true if same_edge?(edge, new_edge) }
+      false
+    end
+
+    def same_edge?(edge1, edge2)
+      edge1_src_id = edge1.src
+      edge1_dst_id = edge1.dst
+      edge2_src_id = edge2.src
+      edge2_dst_id = edge2.dst
+      return true if edge1_src_id == edge2_src_id && edge1_dst_id == edge2_dst_id
+      return true if edge1_dst_id == edge2_src_id && edge1_src_id == edge2_dst_id
+      false
+    end
+  end
+end

data/lib/helper/read_helper.rb

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+# Reading raw file module
+module ReadHelper
+  def init_edges(edge_path)
+    adding_edges(File.read(edge_path))
+  end
+
+  def adding_edges(raw_edges)
+    raw_edges.each_line do |edge|
+      edge = edge.split.map!(&:to_f)
+      add_edge(edge)
+    end
+  end
+end

data/lib/structure/edge.rb

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+# Record Edge
+class Edge
+  attr_accessor :id, :src, :dst, :attrs
+
+  def initialize(params)
+    @id    = params.shift.to_i
+    @src   = params.shift.to_i
+    @dst   = params.shift.to_i
+    @attrs = params
+  end
+end

data/lib/version.rb

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+module GraphReader
+  VERSION = '0.1.0'
+end

metadata

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+--- !ruby/object:Gem::Specification
+name: graph-reader
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- shadow3x3x3
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2016-09-23 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.13'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.13'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+description: This gem can make Nodes and Edges data that are in txt transforming ruby
+  objects.
+email:
+- shadow3x3x3@gmail.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- graph-reader.gemspec
+- lib/graph-reader.rb
+- lib/helper/read_helper.rb
+- lib/structure/edge.rb
+- lib/version.rb
+homepage: https://github.com/shadow3x3x3/graph-reader
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.5.1
+signing_key: 
+specification_version: 4
+summary: Read Nodes and Edges data to Graph
+test_files: []