google-cloud-life_sciences-v2beta 0.3.0 → 0.4.0
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- checksums.yaml +4 -4
- data/README.md +2 -2
- data/lib/google/cloud/life_sciences/v2beta/bindings_override.rb +102 -0
- data/lib/google/cloud/life_sciences/v2beta/rest.rb +38 -0
- data/lib/google/cloud/life_sciences/v2beta/version.rb +1 -1
- data/lib/google/cloud/life_sciences/v2beta/workflows_service/client.rb +8 -8
- data/lib/google/cloud/life_sciences/v2beta/workflows_service/operations.rb +12 -14
- data/lib/google/cloud/life_sciences/v2beta/workflows_service/rest/client.rb +411 -0
- data/lib/google/cloud/life_sciences/v2beta/workflows_service/rest/operations.rb +793 -0
- data/lib/google/cloud/life_sciences/v2beta/workflows_service/rest/service_stub.rb +108 -0
- data/lib/google/cloud/life_sciences/v2beta/workflows_service/rest.rb +54 -0
- data/lib/google/cloud/life_sciences/v2beta/workflows_service.rb +7 -1
- data/lib/google/cloud/life_sciences/v2beta.rb +7 -2
- data/lib/google/cloud/lifesciences/v2beta/workflows_services_pb.rb +4 -4
- data/proto_docs/google/cloud/lifesciences/v2beta/workflows.rb +34 -22
- data/proto_docs/google/rpc/code.rb +6 -6
- data/proto_docs/google/rpc/status.rb +4 -2
- metadata +17 -10
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# frozen_string_literal: true
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# Copyright 2023 Google LLC
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# https://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# Auto-generated by gapic-generator-ruby. DO NOT EDIT!
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require "google/cloud/lifesciences/v2beta/workflows_pb"
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module Google
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module Cloud
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module LifeSciences
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module V2beta
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module WorkflowsService
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module Rest
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##
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# REST service stub for the WorkflowsService service.
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# Service stub contains baseline method implementations
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# including transcoding, making the REST call, and deserialing the response.
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#
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class ServiceStub
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def initialize endpoint:, credentials:
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# These require statements are intentionally placed here to initialize
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# the REST modules only when it's required.
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require "gapic/rest"
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@client_stub = ::Gapic::Rest::ClientStub.new endpoint: endpoint, credentials: credentials,
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numeric_enums: true,
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raise_faraday_errors: false
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end
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##
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# Baseline implementation for the run_pipeline REST call
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#
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# @param request_pb [::Google::Cloud::LifeSciences::V2beta::RunPipelineRequest]
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# A request object representing the call parameters. Required.
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# @param options [::Gapic::CallOptions]
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# Overrides the default settings for this call, e.g, timeout, retries etc. Optional.
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#
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# @yield [result, operation] Access the result along with the TransportOperation object
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# @yieldparam result [::Google::Longrunning::Operation]
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# @yieldparam operation [::Gapic::Rest::TransportOperation]
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#
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# @return [::Google::Longrunning::Operation]
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# A result object deserialized from the server's reply
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def run_pipeline request_pb, options = nil
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raise ::ArgumentError, "request must be provided" if request_pb.nil?
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verb, uri, query_string_params, body = ServiceStub.transcode_run_pipeline_request request_pb
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query_string_params = if query_string_params.any?
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query_string_params.to_h { |p| p.split("=", 2) }
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else
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{}
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end
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response = @client_stub.make_http_request(
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verb,
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uri: uri,
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body: body || "",
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params: query_string_params,
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options: options
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)
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operation = ::Gapic::Rest::TransportOperation.new response
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result = ::Google::Longrunning::Operation.decode_json response.body, ignore_unknown_fields: true
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yield result, operation if block_given?
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result
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end
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##
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# @private
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#
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# GRPC transcoding helper method for the run_pipeline REST call
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#
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# @param request_pb [::Google::Cloud::LifeSciences::V2beta::RunPipelineRequest]
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# A request object representing the call parameters. Required.
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# @return [Array(String, [String, nil], Hash{String => String})]
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# Uri, Body, Query string parameters
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def self.transcode_run_pipeline_request request_pb
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transcoder = Gapic::Rest::GrpcTranscoder.new
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.with_bindings(
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uri_method: :post,
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uri_template: "/v2beta/{parent}/pipelines:run",
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body: "*",
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matches: [
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["parent", %r{^projects/[^/]+/locations/[^/]+/?$}, false]
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]
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)
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transcoder.transcode request_pb
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end
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end
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end
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end
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end
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end
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end
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end
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# frozen_string_literal: true
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# Copyright 2023 Google LLC
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# https://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# Auto-generated by gapic-generator-ruby. DO NOT EDIT!
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require "gapic/rest"
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require "gapic/config"
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require "gapic/config/method"
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require "google/cloud/life_sciences/v2beta/version"
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require "google/cloud/life_sciences/v2beta/bindings_override"
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require "google/cloud/life_sciences/v2beta/workflows_service/credentials"
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require "google/cloud/life_sciences/v2beta/workflows_service/rest/operations"
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require "google/cloud/life_sciences/v2beta/workflows_service/rest/client"
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module Google
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module Cloud
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module LifeSciences
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module V2beta
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##
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# A service for running workflows, such as pipelines consisting of Docker
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# containers.
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#
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# To load this service and instantiate a REST client:
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#
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# require "google/cloud/life_sciences/v2beta/workflows_service/rest"
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# client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Rest::Client.new
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#
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module WorkflowsService
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# Client for the REST transport
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module Rest
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end
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end
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end
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end
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end
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end
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helper_path = ::File.join __dir__, "rest", "helpers.rb"
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require "google/cloud/life_sciences/v2beta/workflows_service/rest/helpers" if ::File.file? helper_path
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require "google/cloud/life_sciences/v2beta/workflows_service/credentials"
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require "google/cloud/life_sciences/v2beta/workflows_service/operations"
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require "google/cloud/life_sciences/v2beta/workflows_service/client"
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require "google/cloud/life_sciences/v2beta/workflows_service/rest"
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module Google
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module Cloud
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# A service for running workflows, such as pipelines consisting of Docker
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# containers.
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#
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#
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# @example Load this service and instantiate a gRPC client
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#
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# require "google/cloud/life_sciences/v2beta/workflows_service"
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# client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Client.new
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#
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# @example Load this service and instantiate a REST client
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#
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# require "google/cloud/life_sciences/v2beta/workflows_service/rest"
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# client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Rest::Client.new
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#
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module WorkflowsService
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end
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end
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module Cloud
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module LifeSciences
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##
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#
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# API client module.
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#
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# @example
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# @example Load this package, including all its services, and instantiate a gRPC client
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#
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# require "google/cloud/life_sciences/v2beta"
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# client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Client.new
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#
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# @example Load this package, including all its services, and instantiate a REST client
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#
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# require "google/cloud/life_sciences/v2beta"
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# client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Rest::Client.new
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#
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module V2beta
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end
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end
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# Runs a pipeline. The returned Operation's [metadata]
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# [google.longrunning.Operation.metadata] field will contain a
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# [google.cloud.lifesciences.v2beta.Metadata][google.cloud.lifesciences.v2beta.Metadata]
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# of the pipeline execution. The
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# [google.cloud.lifesciences.v2beta.Metadata][google.cloud.lifesciences.v2beta.Metadata]
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# object describing the status of the pipeline execution. The
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# [response][google.longrunning.Operation.response] field will contain a
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# [google.cloud.lifesciences.v2beta.RunPipelineResponse][google.cloud.lifesciences.v2beta.RunPipelineResponse]
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# pipeline completes successfully.
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# [google.cloud.lifesciences.v2beta.RunPipelineResponse][google.cloud.lifesciences.v2beta.RunPipelineResponse]
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# object if the pipeline completes successfully.
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#
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# **Note:** Before you can use this method, the *Life Sciences Service Agent*
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# must have access to your project. This is done automatically when the
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# and cannot start with a hyphen.
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# @!attribute [rw] image_uri
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# @return [::String]
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# Required. The URI to pull the container image from. Note that all images
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# by actions in the pipeline are pulled before the first action
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# multiple actions reference the same image, it is only pulled once,
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# Required. The URI to pull the container image from. Note that all images
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# referenced by actions in the pipeline are pulled before the first action
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# runs. If multiple actions reference the same image, it is only pulled once,
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# ensuring that the same image is used for all actions in a single pipeline.
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#
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# The image URI can be either a complete host and image specification (e.g.,
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# If the specified image is not public, the service account specified for
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# the Virtual Machine must have access to pull the images from GCR, or
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# appropriate credentials must be specified in the
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# {::Google::Cloud::LifeSciences::V2beta::Action#credentials google.cloud.lifesciences.v2beta.Action.credentials}
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# {::Google::Cloud::LifeSciences::V2beta::Action#credentials google.cloud.lifesciences.v2beta.Action.credentials}
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# field.
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# @!attribute [rw] commands
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# @return [::Array<::String>]
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# If specified, overrides the `CMD` specified in the container. If the
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# @!attribute [rw] environment
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# @return [::Google::Protobuf::Map{::String => ::String}]
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# The environment to pass into the container. This environment is merged
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# with values specified in the
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# with values specified in the
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# {::Google::Cloud::LifeSciences::V2beta::Pipeline google.cloud.lifesciences.v2beta.Pipeline}
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# message, overwriting any duplicate values.
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#
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# In addition to the values passed here, a few other values are
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# @return [::Google::Cloud::LifeSciences::V2beta::Secret]
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# The encrypted environment to pass into the container. This environment is
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# merged with values specified in the
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# {::Google::Cloud::LifeSciences::V2beta::Pipeline google.cloud.lifesciences.v2beta.Pipeline}
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# duplicate values.
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# {::Google::Cloud::LifeSciences::V2beta::Pipeline google.cloud.lifesciences.v2beta.Pipeline}
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# message, overwriting any duplicate values.
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#
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# The secret must decrypt to a JSON-encoded dictionary where key-value pairs
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# serve as environment variable names and their values. The decoded
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# Carries information about a Compute Engine VM resource.
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# @!attribute [rw] machine_type
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# @return [::String]
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# Required. The machine type of the virtual machine to create. Must be the
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# of a standard machine type (such as "n1-standard-1") or a custom
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# type (such as "custom-1-4096", where "1" indicates the number of
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# "4096" indicates the memory in MB). See
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#
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# Required. The machine type of the virtual machine to create. Must be the
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# short name of a standard machine type (such as "n1-standard-1") or a custom
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# machine type (such as "custom-1-4096", where "1" indicates the number of
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# vCPUs and "4096" indicates the memory in MB). See [Creating an instance
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# with a custom machine
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# type](https://cloud.google.com/compute/docs/instances/creating-instance-with-custom-machine-type#create)
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# for more specifications on creating a custom machine type.
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# @!attribute [rw] preemptible
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# information in the `details` field.
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# @!attribute [rw] delayed
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# @return [::Google::Cloud::LifeSciences::V2beta::DelayedEvent]
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# See
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# See
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# {::Google::Cloud::LifeSciences::V2beta::DelayedEvent google.cloud.lifesciences.v2beta.DelayedEvent}.
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# @!attribute [rw] worker_assigned
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# @return [::Google::Cloud::LifeSciences::V2beta::WorkerAssignedEvent]
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# See
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# See
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# {::Google::Cloud::LifeSciences::V2beta::WorkerAssignedEvent google.cloud.lifesciences.v2beta.WorkerAssignedEvent}.
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# @!attribute [rw] worker_released
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# @return [::Google::Cloud::LifeSciences::V2beta::WorkerReleasedEvent]
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# See
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# See
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# {::Google::Cloud::LifeSciences::V2beta::WorkerReleasedEvent google.cloud.lifesciences.v2beta.WorkerReleasedEvent}.
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# @!attribute [rw] pull_started
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# @return [::Google::Cloud::LifeSciences::V2beta::PullStartedEvent]
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# See
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# See
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# {::Google::Cloud::LifeSciences::V2beta::PullStartedEvent google.cloud.lifesciences.v2beta.PullStartedEvent}.
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# @!attribute [rw] pull_stopped
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# @return [::Google::Cloud::LifeSciences::V2beta::PullStoppedEvent]
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# See
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# See
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# {::Google::Cloud::LifeSciences::V2beta::PullStoppedEvent google.cloud.lifesciences.v2beta.PullStoppedEvent}.
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# @!attribute [rw] container_started
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# @return [::Google::Cloud::LifeSciences::V2beta::ContainerStartedEvent]
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# See
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# See
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# {::Google::Cloud::LifeSciences::V2beta::ContainerStartedEvent google.cloud.lifesciences.v2beta.ContainerStartedEvent}.
|
704
712
|
# @!attribute [rw] container_stopped
|
705
713
|
# @return [::Google::Cloud::LifeSciences::V2beta::ContainerStoppedEvent]
|
706
|
-
# See
|
714
|
+
# See
|
715
|
+
# {::Google::Cloud::LifeSciences::V2beta::ContainerStoppedEvent google.cloud.lifesciences.v2beta.ContainerStoppedEvent}.
|
707
716
|
# @!attribute [rw] container_killed
|
708
717
|
# @return [::Google::Cloud::LifeSciences::V2beta::ContainerKilledEvent]
|
709
|
-
# See
|
718
|
+
# See
|
719
|
+
# {::Google::Cloud::LifeSciences::V2beta::ContainerKilledEvent google.cloud.lifesciences.v2beta.ContainerKilledEvent}.
|
710
720
|
# @!attribute [rw] unexpected_exit_status
|
711
721
|
# @return [::Google::Cloud::LifeSciences::V2beta::UnexpectedExitStatusEvent]
|
712
|
-
# See
|
722
|
+
# See
|
723
|
+
# {::Google::Cloud::LifeSciences::V2beta::UnexpectedExitStatusEvent google.cloud.lifesciences.v2beta.UnexpectedExitStatusEvent}.
|
713
724
|
# @!attribute [rw] failed
|
714
725
|
# @return [::Google::Cloud::LifeSciences::V2beta::FailedEvent]
|
715
|
-
# See
|
726
|
+
# See
|
727
|
+
# {::Google::Cloud::LifeSciences::V2beta::FailedEvent google.cloud.lifesciences.v2beta.FailedEvent}.
|
716
728
|
class Event
|
717
729
|
include ::Google::Protobuf::MessageExts
|
718
730
|
extend ::Google::Protobuf::MessageExts::ClassMethods
|
@@ -27,7 +27,7 @@ module Google
|
|
27
27
|
# `OUT_OF_RANGE` over `FAILED_PRECONDITION` if both codes apply.
|
28
28
|
# Similarly prefer `NOT_FOUND` or `ALREADY_EXISTS` over `FAILED_PRECONDITION`.
|
29
29
|
module Code
|
30
|
-
# Not an error; returned on success
|
30
|
+
# Not an error; returned on success.
|
31
31
|
#
|
32
32
|
# HTTP Mapping: 200 OK
|
33
33
|
OK = 0
|
@@ -66,7 +66,7 @@ module Google
|
|
66
66
|
# Some requested entity (e.g., file or directory) was not found.
|
67
67
|
#
|
68
68
|
# Note to server developers: if a request is denied for an entire class
|
69
|
-
# of users, such as gradual feature rollout or undocumented
|
69
|
+
# of users, such as gradual feature rollout or undocumented allowlist,
|
70
70
|
# `NOT_FOUND` may be used. If a request is denied for some users within
|
71
71
|
# a class of users, such as user-based access control, `PERMISSION_DENIED`
|
72
72
|
# must be used.
|
@@ -112,11 +112,11 @@ module Google
|
|
112
112
|
# Service implementors can use the following guidelines to decide
|
113
113
|
# between `FAILED_PRECONDITION`, `ABORTED`, and `UNAVAILABLE`:
|
114
114
|
# (a) Use `UNAVAILABLE` if the client can retry just the failing call.
|
115
|
-
# (b) Use `ABORTED` if the client should retry at a higher level
|
116
|
-
#
|
117
|
-
# client should restart a read-modify-write sequence
|
115
|
+
# (b) Use `ABORTED` if the client should retry at a higher level. For
|
116
|
+
# example, when a client-specified test-and-set fails, indicating the
|
117
|
+
# client should restart a read-modify-write sequence.
|
118
118
|
# (c) Use `FAILED_PRECONDITION` if the client should not retry until
|
119
|
-
# the system state has been explicitly fixed.
|
119
|
+
# the system state has been explicitly fixed. For example, if an "rmdir"
|
120
120
|
# fails because the directory is non-empty, `FAILED_PRECONDITION`
|
121
121
|
# should be returned since the client should not retry unless
|
122
122
|
# the files are deleted from the directory.
|
@@ -28,12 +28,14 @@ module Google
|
|
28
28
|
# [API Design Guide](https://cloud.google.com/apis/design/errors).
|
29
29
|
# @!attribute [rw] code
|
30
30
|
# @return [::Integer]
|
31
|
-
# The status code, which should be an enum value of
|
31
|
+
# The status code, which should be an enum value of
|
32
|
+
# {::Google::Rpc::Code google.rpc.Code}.
|
32
33
|
# @!attribute [rw] message
|
33
34
|
# @return [::String]
|
34
35
|
# A developer-facing error message, which should be in English. Any
|
35
36
|
# user-facing error message should be localized and sent in the
|
36
|
-
# {::Google::Rpc::Status#details google.rpc.Status.details} field, or localized
|
37
|
+
# {::Google::Rpc::Status#details google.rpc.Status.details} field, or localized
|
38
|
+
# by the client.
|
37
39
|
# @!attribute [rw] details
|
38
40
|
# @return [::Array<::Google::Protobuf::Any>]
|
39
41
|
# A list of messages that carry the error details. There is a common set of
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: google-cloud-life_sciences-v2beta
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
|
+
version: 0.4.0
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Google LLC
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date:
|
11
|
+
date: 2023-03-08 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: gapic-common
|
@@ -16,7 +16,7 @@ dependencies:
|
|
16
16
|
requirements:
|
17
17
|
- - ">="
|
18
18
|
- !ruby/object:Gem::Version
|
19
|
-
version:
|
19
|
+
version: 0.18.0
|
20
20
|
- - "<"
|
21
21
|
- !ruby/object:Gem::Version
|
22
22
|
version: 2.a
|
@@ -26,7 +26,7 @@ dependencies:
|
|
26
26
|
requirements:
|
27
27
|
- - ">="
|
28
28
|
- !ruby/object:Gem::Version
|
29
|
-
version:
|
29
|
+
version: 0.18.0
|
30
30
|
- - "<"
|
31
31
|
- !ruby/object:Gem::Version
|
32
32
|
version: 2.a
|
@@ -50,7 +50,7 @@ dependencies:
|
|
50
50
|
requirements:
|
51
51
|
- - ">="
|
52
52
|
- !ruby/object:Gem::Version
|
53
|
-
version: '0.
|
53
|
+
version: '0.4'
|
54
54
|
- - "<"
|
55
55
|
- !ruby/object:Gem::Version
|
56
56
|
version: 2.a
|
@@ -60,7 +60,7 @@ dependencies:
|
|
60
60
|
requirements:
|
61
61
|
- - ">="
|
62
62
|
- !ruby/object:Gem::Version
|
63
|
-
version: '0.
|
63
|
+
version: '0.4'
|
64
64
|
- - "<"
|
65
65
|
- !ruby/object:Gem::Version
|
66
66
|
version: 2.a
|
@@ -70,14 +70,14 @@ dependencies:
|
|
70
70
|
requirements:
|
71
71
|
- - "~>"
|
72
72
|
- !ruby/object:Gem::Version
|
73
|
-
version: 1.26.
|
73
|
+
version: 1.26.3
|
74
74
|
type: :development
|
75
75
|
prerelease: false
|
76
76
|
version_requirements: !ruby/object:Gem::Requirement
|
77
77
|
requirements:
|
78
78
|
- - "~>"
|
79
79
|
- !ruby/object:Gem::Version
|
80
|
-
version: 1.26.
|
80
|
+
version: 1.26.3
|
81
81
|
- !ruby/object:Gem::Dependency
|
82
82
|
name: minitest
|
83
83
|
requirement: !ruby/object:Gem::Requirement
|
@@ -193,11 +193,17 @@ files:
|
|
193
193
|
- README.md
|
194
194
|
- lib/google-cloud-life_sciences-v2beta.rb
|
195
195
|
- lib/google/cloud/life_sciences/v2beta.rb
|
196
|
+
- lib/google/cloud/life_sciences/v2beta/bindings_override.rb
|
197
|
+
- lib/google/cloud/life_sciences/v2beta/rest.rb
|
196
198
|
- lib/google/cloud/life_sciences/v2beta/version.rb
|
197
199
|
- lib/google/cloud/life_sciences/v2beta/workflows_service.rb
|
198
200
|
- lib/google/cloud/life_sciences/v2beta/workflows_service/client.rb
|
199
201
|
- lib/google/cloud/life_sciences/v2beta/workflows_service/credentials.rb
|
200
202
|
- lib/google/cloud/life_sciences/v2beta/workflows_service/operations.rb
|
203
|
+
- lib/google/cloud/life_sciences/v2beta/workflows_service/rest.rb
|
204
|
+
- lib/google/cloud/life_sciences/v2beta/workflows_service/rest/client.rb
|
205
|
+
- lib/google/cloud/life_sciences/v2beta/workflows_service/rest/operations.rb
|
206
|
+
- lib/google/cloud/life_sciences/v2beta/workflows_service/rest/service_stub.rb
|
201
207
|
- lib/google/cloud/lifesciences/v2beta/workflows_pb.rb
|
202
208
|
- lib/google/cloud/lifesciences/v2beta/workflows_services_pb.rb
|
203
209
|
- proto_docs/README.md
|
@@ -232,8 +238,9 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
232
238
|
- !ruby/object:Gem::Version
|
233
239
|
version: '0'
|
234
240
|
requirements: []
|
235
|
-
rubygems_version: 3.
|
241
|
+
rubygems_version: 3.4.2
|
236
242
|
signing_key:
|
237
243
|
specification_version: 4
|
238
|
-
summary:
|
244
|
+
summary: Cloud Life Sciences is a suite of services and tools for managing, processing,
|
245
|
+
and transforming life sciences data.
|
239
246
|
test_files: []
|