google-cloud-life_sciences-v2beta 0.3.0 → 0.4.0

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@@ -0,0 +1,108 @@
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+ # frozen_string_literal: true
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+
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+ # Copyright 2023 Google LLC
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
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+ #
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+ # https://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
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+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+
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+ # Auto-generated by gapic-generator-ruby. DO NOT EDIT!
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+
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+ require "google/cloud/lifesciences/v2beta/workflows_pb"
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+
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+ module Google
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+ module Cloud
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+ module LifeSciences
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+ module V2beta
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+ module WorkflowsService
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+ module Rest
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+ ##
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+ # REST service stub for the WorkflowsService service.
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+ # Service stub contains baseline method implementations
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+ # including transcoding, making the REST call, and deserialing the response.
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+ #
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+ class ServiceStub
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+ def initialize endpoint:, credentials:
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+ # These require statements are intentionally placed here to initialize
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+ # the REST modules only when it's required.
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+ require "gapic/rest"
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+
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+ @client_stub = ::Gapic::Rest::ClientStub.new endpoint: endpoint, credentials: credentials,
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+ numeric_enums: true,
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+ raise_faraday_errors: false
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+ end
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+
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+ ##
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+ # Baseline implementation for the run_pipeline REST call
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+ #
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+ # @param request_pb [::Google::Cloud::LifeSciences::V2beta::RunPipelineRequest]
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+ # A request object representing the call parameters. Required.
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+ # @param options [::Gapic::CallOptions]
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+ # Overrides the default settings for this call, e.g, timeout, retries etc. Optional.
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+ #
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+ # @yield [result, operation] Access the result along with the TransportOperation object
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+ # @yieldparam result [::Google::Longrunning::Operation]
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+ # @yieldparam operation [::Gapic::Rest::TransportOperation]
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+ #
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+ # @return [::Google::Longrunning::Operation]
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+ # A result object deserialized from the server's reply
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+ def run_pipeline request_pb, options = nil
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+ raise ::ArgumentError, "request must be provided" if request_pb.nil?
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+
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+ verb, uri, query_string_params, body = ServiceStub.transcode_run_pipeline_request request_pb
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+ query_string_params = if query_string_params.any?
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+ query_string_params.to_h { |p| p.split("=", 2) }
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+ else
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+ {}
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+ end
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+
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+ response = @client_stub.make_http_request(
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+ verb,
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+ uri: uri,
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+ body: body || "",
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+ params: query_string_params,
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+ options: options
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+ )
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+ operation = ::Gapic::Rest::TransportOperation.new response
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+ result = ::Google::Longrunning::Operation.decode_json response.body, ignore_unknown_fields: true
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+
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+ yield result, operation if block_given?
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+ result
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+ end
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+
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+ ##
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+ # @private
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+ #
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+ # GRPC transcoding helper method for the run_pipeline REST call
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+ #
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+ # @param request_pb [::Google::Cloud::LifeSciences::V2beta::RunPipelineRequest]
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+ # A request object representing the call parameters. Required.
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+ # @return [Array(String, [String, nil], Hash{String => String})]
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+ # Uri, Body, Query string parameters
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+ def self.transcode_run_pipeline_request request_pb
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+ transcoder = Gapic::Rest::GrpcTranscoder.new
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+ .with_bindings(
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+ uri_method: :post,
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+ uri_template: "/v2beta/{parent}/pipelines:run",
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+ body: "*",
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+ matches: [
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+ ["parent", %r{^projects/[^/]+/locations/[^/]+/?$}, false]
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+ ]
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+ )
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+ transcoder.transcode request_pb
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+ end
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+ end
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+ end
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+ end
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+ end
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+ end
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+ end
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+ end
@@ -0,0 +1,54 @@
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+ # frozen_string_literal: true
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+
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+ # Copyright 2023 Google LLC
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
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+ #
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+ # https://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
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+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+
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+ # Auto-generated by gapic-generator-ruby. DO NOT EDIT!
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+
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+ require "gapic/rest"
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+ require "gapic/config"
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+ require "gapic/config/method"
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+
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+ require "google/cloud/life_sciences/v2beta/version"
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+ require "google/cloud/life_sciences/v2beta/bindings_override"
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+
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+ require "google/cloud/life_sciences/v2beta/workflows_service/credentials"
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+ require "google/cloud/life_sciences/v2beta/workflows_service/rest/operations"
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+ require "google/cloud/life_sciences/v2beta/workflows_service/rest/client"
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+
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+ module Google
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+ module Cloud
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+ module LifeSciences
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+ module V2beta
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+ ##
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+ # A service for running workflows, such as pipelines consisting of Docker
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+ # containers.
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+ #
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+ # To load this service and instantiate a REST client:
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+ #
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+ # require "google/cloud/life_sciences/v2beta/workflows_service/rest"
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+ # client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Rest::Client.new
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+ #
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+ module WorkflowsService
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+ # Client for the REST transport
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+ module Rest
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+ end
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+ end
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+ end
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+ end
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+ end
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+ end
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+
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+ helper_path = ::File.join __dir__, "rest", "helpers.rb"
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+ require "google/cloud/life_sciences/v2beta/workflows_service/rest/helpers" if ::File.file? helper_path
@@ -25,6 +25,7 @@ require "google/cloud/life_sciences/v2beta/version"
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  require "google/cloud/life_sciences/v2beta/workflows_service/credentials"
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  require "google/cloud/life_sciences/v2beta/workflows_service/operations"
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  require "google/cloud/life_sciences/v2beta/workflows_service/client"
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+ require "google/cloud/life_sciences/v2beta/workflows_service/rest"
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  module Google
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  module Cloud
@@ -34,11 +35,16 @@ module Google
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  # A service for running workflows, such as pipelines consisting of Docker
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  # containers.
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  #
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- # To load this service and instantiate a client:
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+ # @example Load this service and instantiate a gRPC client
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  #
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  # require "google/cloud/life_sciences/v2beta/workflows_service"
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  # client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Client.new
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  #
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+ # @example Load this service and instantiate a REST client
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+ #
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+ # require "google/cloud/life_sciences/v2beta/workflows_service/rest"
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+ # client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Rest::Client.new
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+ #
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  module WorkflowsService
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  end
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  end
@@ -23,13 +23,18 @@ module Google
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  module Cloud
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  module LifeSciences
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  ##
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- # To load this package, including all its services, and instantiate a client:
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+ # API client module.
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  #
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- # @example
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+ # @example Load this package, including all its services, and instantiate a gRPC client
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  #
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  # require "google/cloud/life_sciences/v2beta"
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  # client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Client.new
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  #
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+ # @example Load this package, including all its services, and instantiate a REST client
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+ #
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+ # require "google/cloud/life_sciences/v2beta"
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+ # client = ::Google::Cloud::LifeSciences::V2beta::WorkflowsService::Rest::Client.new
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+ #
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  module V2beta
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  end
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  end
@@ -36,11 +36,11 @@ module Google
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  # Runs a pipeline. The returned Operation's [metadata]
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  # [google.longrunning.Operation.metadata] field will contain a
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- # [google.cloud.lifesciences.v2beta.Metadata][google.cloud.lifesciences.v2beta.Metadata] object describing the status
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- # of the pipeline execution. The
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+ # [google.cloud.lifesciences.v2beta.Metadata][google.cloud.lifesciences.v2beta.Metadata]
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+ # object describing the status of the pipeline execution. The
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  # [response][google.longrunning.Operation.response] field will contain a
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- # [google.cloud.lifesciences.v2beta.RunPipelineResponse][google.cloud.lifesciences.v2beta.RunPipelineResponse] object if the
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- # pipeline completes successfully.
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+ # [google.cloud.lifesciences.v2beta.RunPipelineResponse][google.cloud.lifesciences.v2beta.RunPipelineResponse]
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+ # object if the pipeline completes successfully.
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  #
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  # **Note:** Before you can use this method, the *Life Sciences Service Agent*
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  # must have access to your project. This is done automatically when the
@@ -117,9 +117,9 @@ module Google
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  # and cannot start with a hyphen.
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  # @!attribute [rw] image_uri
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  # @return [::String]
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- # Required. The URI to pull the container image from. Note that all images referenced
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- # by actions in the pipeline are pulled before the first action runs. If
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- # multiple actions reference the same image, it is only pulled once,
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+ # Required. The URI to pull the container image from. Note that all images
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+ # referenced by actions in the pipeline are pulled before the first action
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+ # runs. If multiple actions reference the same image, it is only pulled once,
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  # ensuring that the same image is used for all actions in a single pipeline.
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  #
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  # The image URI can be either a complete host and image specification (e.g.,
@@ -130,7 +130,8 @@ module Google
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  # If the specified image is not public, the service account specified for
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  # the Virtual Machine must have access to pull the images from GCR, or
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  # appropriate credentials must be specified in the
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- # {::Google::Cloud::LifeSciences::V2beta::Action#credentials google.cloud.lifesciences.v2beta.Action.credentials} field.
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+ # {::Google::Cloud::LifeSciences::V2beta::Action#credentials google.cloud.lifesciences.v2beta.Action.credentials}
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+ # field.
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  # @!attribute [rw] commands
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  # @return [::Array<::String>]
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  # If specified, overrides the `CMD` specified in the container. If the
@@ -143,7 +144,8 @@ module Google
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  # @!attribute [rw] environment
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  # @return [::Google::Protobuf::Map{::String => ::String}]
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  # The environment to pass into the container. This environment is merged
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- # with values specified in the {::Google::Cloud::LifeSciences::V2beta::Pipeline google.cloud.lifesciences.v2beta.Pipeline}
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+ # with values specified in the
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+ # {::Google::Cloud::LifeSciences::V2beta::Pipeline google.cloud.lifesciences.v2beta.Pipeline}
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  # message, overwriting any duplicate values.
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  #
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  # In addition to the values passed here, a few other values are
@@ -162,8 +164,8 @@ module Google
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  # @return [::Google::Cloud::LifeSciences::V2beta::Secret]
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  # The encrypted environment to pass into the container. This environment is
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  # merged with values specified in the
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- # {::Google::Cloud::LifeSciences::V2beta::Pipeline google.cloud.lifesciences.v2beta.Pipeline} message, overwriting any
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- # duplicate values.
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+ # {::Google::Cloud::LifeSciences::V2beta::Pipeline google.cloud.lifesciences.v2beta.Pipeline}
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+ # message, overwriting any duplicate values.
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  #
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  # The secret must decrypt to a JSON-encoded dictionary where key-value pairs
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  # serve as environment variable names and their values. The decoded
@@ -353,11 +355,11 @@ module Google
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  # Carries information about a Compute Engine VM resource.
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  # @!attribute [rw] machine_type
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  # @return [::String]
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- # Required. The machine type of the virtual machine to create. Must be the short name
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- # of a standard machine type (such as "n1-standard-1") or a custom machine
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- # type (such as "custom-1-4096", where "1" indicates the number of vCPUs and
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- # "4096" indicates the memory in MB). See
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- # [Creating an instance with a custom machine
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+ # Required. The machine type of the virtual machine to create. Must be the
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+ # short name of a standard machine type (such as "n1-standard-1") or a custom
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+ # machine type (such as "custom-1-4096", where "1" indicates the number of
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+ # vCPUs and "4096" indicates the memory in MB). See [Creating an instance
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+ # with a custom machine
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  # type](https://cloud.google.com/compute/docs/instances/creating-instance-with-custom-machine-type#create)
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  # for more specifications on creating a custom machine type.
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  # @!attribute [rw] preemptible
@@ -685,34 +687,44 @@ module Google
685
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  # information in the `details` field.
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  # @!attribute [rw] delayed
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  # @return [::Google::Cloud::LifeSciences::V2beta::DelayedEvent]
688
- # See {::Google::Cloud::LifeSciences::V2beta::DelayedEvent google.cloud.lifesciences.v2beta.DelayedEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::DelayedEvent google.cloud.lifesciences.v2beta.DelayedEvent}.
689
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  # @!attribute [rw] worker_assigned
690
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  # @return [::Google::Cloud::LifeSciences::V2beta::WorkerAssignedEvent]
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- # See {::Google::Cloud::LifeSciences::V2beta::WorkerAssignedEvent google.cloud.lifesciences.v2beta.WorkerAssignedEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::WorkerAssignedEvent google.cloud.lifesciences.v2beta.WorkerAssignedEvent}.
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  # @!attribute [rw] worker_released
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  # @return [::Google::Cloud::LifeSciences::V2beta::WorkerReleasedEvent]
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- # See {::Google::Cloud::LifeSciences::V2beta::WorkerReleasedEvent google.cloud.lifesciences.v2beta.WorkerReleasedEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::WorkerReleasedEvent google.cloud.lifesciences.v2beta.WorkerReleasedEvent}.
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  # @!attribute [rw] pull_started
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  # @return [::Google::Cloud::LifeSciences::V2beta::PullStartedEvent]
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- # See {::Google::Cloud::LifeSciences::V2beta::PullStartedEvent google.cloud.lifesciences.v2beta.PullStartedEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::PullStartedEvent google.cloud.lifesciences.v2beta.PullStartedEvent}.
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  # @!attribute [rw] pull_stopped
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  # @return [::Google::Cloud::LifeSciences::V2beta::PullStoppedEvent]
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- # See {::Google::Cloud::LifeSciences::V2beta::PullStoppedEvent google.cloud.lifesciences.v2beta.PullStoppedEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::PullStoppedEvent google.cloud.lifesciences.v2beta.PullStoppedEvent}.
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  # @!attribute [rw] container_started
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  # @return [::Google::Cloud::LifeSciences::V2beta::ContainerStartedEvent]
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- # See {::Google::Cloud::LifeSciences::V2beta::ContainerStartedEvent google.cloud.lifesciences.v2beta.ContainerStartedEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::ContainerStartedEvent google.cloud.lifesciences.v2beta.ContainerStartedEvent}.
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  # @!attribute [rw] container_stopped
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  # @return [::Google::Cloud::LifeSciences::V2beta::ContainerStoppedEvent]
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- # See {::Google::Cloud::LifeSciences::V2beta::ContainerStoppedEvent google.cloud.lifesciences.v2beta.ContainerStoppedEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::ContainerStoppedEvent google.cloud.lifesciences.v2beta.ContainerStoppedEvent}.
707
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  # @!attribute [rw] container_killed
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  # @return [::Google::Cloud::LifeSciences::V2beta::ContainerKilledEvent]
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- # See {::Google::Cloud::LifeSciences::V2beta::ContainerKilledEvent google.cloud.lifesciences.v2beta.ContainerKilledEvent}.
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+ # See
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+ # {::Google::Cloud::LifeSciences::V2beta::ContainerKilledEvent google.cloud.lifesciences.v2beta.ContainerKilledEvent}.
710
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  # @!attribute [rw] unexpected_exit_status
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  # @return [::Google::Cloud::LifeSciences::V2beta::UnexpectedExitStatusEvent]
712
- # See {::Google::Cloud::LifeSciences::V2beta::UnexpectedExitStatusEvent google.cloud.lifesciences.v2beta.UnexpectedExitStatusEvent}.
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+ # See
723
+ # {::Google::Cloud::LifeSciences::V2beta::UnexpectedExitStatusEvent google.cloud.lifesciences.v2beta.UnexpectedExitStatusEvent}.
713
724
  # @!attribute [rw] failed
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  # @return [::Google::Cloud::LifeSciences::V2beta::FailedEvent]
715
- # See {::Google::Cloud::LifeSciences::V2beta::FailedEvent google.cloud.lifesciences.v2beta.FailedEvent}.
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+ # See
727
+ # {::Google::Cloud::LifeSciences::V2beta::FailedEvent google.cloud.lifesciences.v2beta.FailedEvent}.
716
728
  class Event
717
729
  include ::Google::Protobuf::MessageExts
718
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  extend ::Google::Protobuf::MessageExts::ClassMethods
@@ -27,7 +27,7 @@ module Google
27
27
  # `OUT_OF_RANGE` over `FAILED_PRECONDITION` if both codes apply.
28
28
  # Similarly prefer `NOT_FOUND` or `ALREADY_EXISTS` over `FAILED_PRECONDITION`.
29
29
  module Code
30
- # Not an error; returned on success
30
+ # Not an error; returned on success.
31
31
  #
32
32
  # HTTP Mapping: 200 OK
33
33
  OK = 0
@@ -66,7 +66,7 @@ module Google
66
66
  # Some requested entity (e.g., file or directory) was not found.
67
67
  #
68
68
  # Note to server developers: if a request is denied for an entire class
69
- # of users, such as gradual feature rollout or undocumented whitelist,
69
+ # of users, such as gradual feature rollout or undocumented allowlist,
70
70
  # `NOT_FOUND` may be used. If a request is denied for some users within
71
71
  # a class of users, such as user-based access control, `PERMISSION_DENIED`
72
72
  # must be used.
@@ -112,11 +112,11 @@ module Google
112
112
  # Service implementors can use the following guidelines to decide
113
113
  # between `FAILED_PRECONDITION`, `ABORTED`, and `UNAVAILABLE`:
114
114
  # (a) Use `UNAVAILABLE` if the client can retry just the failing call.
115
- # (b) Use `ABORTED` if the client should retry at a higher level
116
- # (e.g., when a client-specified test-and-set fails, indicating the
117
- # client should restart a read-modify-write sequence).
115
+ # (b) Use `ABORTED` if the client should retry at a higher level. For
116
+ # example, when a client-specified test-and-set fails, indicating the
117
+ # client should restart a read-modify-write sequence.
118
118
  # (c) Use `FAILED_PRECONDITION` if the client should not retry until
119
- # the system state has been explicitly fixed. E.g., if an "rmdir"
119
+ # the system state has been explicitly fixed. For example, if an "rmdir"
120
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  # fails because the directory is non-empty, `FAILED_PRECONDITION`
121
121
  # should be returned since the client should not retry unless
122
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  # the files are deleted from the directory.
@@ -28,12 +28,14 @@ module Google
28
28
  # [API Design Guide](https://cloud.google.com/apis/design/errors).
29
29
  # @!attribute [rw] code
30
30
  # @return [::Integer]
31
- # The status code, which should be an enum value of {::Google::Rpc::Code google.rpc.Code}.
31
+ # The status code, which should be an enum value of
32
+ # {::Google::Rpc::Code google.rpc.Code}.
32
33
  # @!attribute [rw] message
33
34
  # @return [::String]
34
35
  # A developer-facing error message, which should be in English. Any
35
36
  # user-facing error message should be localized and sent in the
36
- # {::Google::Rpc::Status#details google.rpc.Status.details} field, or localized by the client.
37
+ # {::Google::Rpc::Status#details google.rpc.Status.details} field, or localized
38
+ # by the client.
37
39
  # @!attribute [rw] details
38
40
  # @return [::Array<::Google::Protobuf::Any>]
39
41
  # A list of messages that carry the error details. There is a common set of
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: google-cloud-life_sciences-v2beta
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.3.0
4
+ version: 0.4.0
5
5
  platform: ruby
6
6
  authors:
7
7
  - Google LLC
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2022-11-16 00:00:00.000000000 Z
11
+ date: 2023-03-08 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: gapic-common
@@ -16,7 +16,7 @@ dependencies:
16
16
  requirements:
17
17
  - - ">="
18
18
  - !ruby/object:Gem::Version
19
- version: '0.12'
19
+ version: 0.18.0
20
20
  - - "<"
21
21
  - !ruby/object:Gem::Version
22
22
  version: 2.a
@@ -26,7 +26,7 @@ dependencies:
26
26
  requirements:
27
27
  - - ">="
28
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  - !ruby/object:Gem::Version
29
- version: '0.12'
29
+ version: 0.18.0
30
30
  - - "<"
31
31
  - !ruby/object:Gem::Version
32
32
  version: 2.a
@@ -50,7 +50,7 @@ dependencies:
50
50
  requirements:
51
51
  - - ">="
52
52
  - !ruby/object:Gem::Version
53
- version: '0.0'
53
+ version: '0.4'
54
54
  - - "<"
55
55
  - !ruby/object:Gem::Version
56
56
  version: 2.a
@@ -60,7 +60,7 @@ dependencies:
60
60
  requirements:
61
61
  - - ">="
62
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  - !ruby/object:Gem::Version
63
- version: '0.0'
63
+ version: '0.4'
64
64
  - - "<"
65
65
  - !ruby/object:Gem::Version
66
66
  version: 2.a
@@ -70,14 +70,14 @@ dependencies:
70
70
  requirements:
71
71
  - - "~>"
72
72
  - !ruby/object:Gem::Version
73
- version: 1.26.1
73
+ version: 1.26.3
74
74
  type: :development
75
75
  prerelease: false
76
76
  version_requirements: !ruby/object:Gem::Requirement
77
77
  requirements:
78
78
  - - "~>"
79
79
  - !ruby/object:Gem::Version
80
- version: 1.26.1
80
+ version: 1.26.3
81
81
  - !ruby/object:Gem::Dependency
82
82
  name: minitest
83
83
  requirement: !ruby/object:Gem::Requirement
@@ -193,11 +193,17 @@ files:
193
193
  - README.md
194
194
  - lib/google-cloud-life_sciences-v2beta.rb
195
195
  - lib/google/cloud/life_sciences/v2beta.rb
196
+ - lib/google/cloud/life_sciences/v2beta/bindings_override.rb
197
+ - lib/google/cloud/life_sciences/v2beta/rest.rb
196
198
  - lib/google/cloud/life_sciences/v2beta/version.rb
197
199
  - lib/google/cloud/life_sciences/v2beta/workflows_service.rb
198
200
  - lib/google/cloud/life_sciences/v2beta/workflows_service/client.rb
199
201
  - lib/google/cloud/life_sciences/v2beta/workflows_service/credentials.rb
200
202
  - lib/google/cloud/life_sciences/v2beta/workflows_service/operations.rb
203
+ - lib/google/cloud/life_sciences/v2beta/workflows_service/rest.rb
204
+ - lib/google/cloud/life_sciences/v2beta/workflows_service/rest/client.rb
205
+ - lib/google/cloud/life_sciences/v2beta/workflows_service/rest/operations.rb
206
+ - lib/google/cloud/life_sciences/v2beta/workflows_service/rest/service_stub.rb
201
207
  - lib/google/cloud/lifesciences/v2beta/workflows_pb.rb
202
208
  - lib/google/cloud/lifesciences/v2beta/workflows_services_pb.rb
203
209
  - proto_docs/README.md
@@ -232,8 +238,9 @@ required_rubygems_version: !ruby/object:Gem::Requirement
232
238
  - !ruby/object:Gem::Version
233
239
  version: '0'
234
240
  requirements: []
235
- rubygems_version: 3.3.14
241
+ rubygems_version: 3.4.2
236
242
  signing_key:
237
243
  specification_version: 4
238
- summary: API Client library for the Cloud Life Sciences V2beta API
244
+ summary: Cloud Life Sciences is a suite of services and tools for managing, processing,
245
+ and transforming life sciences data.
239
246
  test_files: []