google-apis-genomics_v1 0.1.0

data/lib/google/apis/genomics_v1/gem_version.rb

@@ -0,0 +1,28 @@
+# Copyright 2020 Google LLC
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+module Google
+  module Apis
+    module GenomicsV1
+      # Version of the google-apis-genomics_v1 gem
+      GEM_VERSION = "0.1.0"
+
+      # Version of the code generator used to generate this client
+      GENERATOR_VERSION = "0.1.1"
+
+      # Revision of the discovery document this client was generated from
+      REVISION = "20200804"
+    end
+  end
+end

data/lib/google/apis/genomics_v1/representations.rb

@@ -0,0 +1,332 @@
+# Copyright 2020 Google LLC
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+require 'date'
+require 'google/apis/core/base_service'
+require 'google/apis/core/json_representation'
+require 'google/apis/core/hashable'
+require 'google/apis/errors'
+
+module Google
+  module Apis
+    module GenomicsV1
+      
+      class CancelOperationRequest
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class ComputeEngine
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class ContainerKilledEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class ContainerStartedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class ContainerStoppedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class DelayedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class Empty
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class Event
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class FailedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class ListOperationsResponse
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class Operation
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class OperationEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class OperationMetadata
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class PullStartedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class PullStoppedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class RunPipelineResponse
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class RuntimeMetadata
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class Status
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class UnexpectedExitStatusEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class WorkerAssignedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class WorkerReleasedEvent
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
+      end
+      
+      class CancelOperationRequest
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+        end
+      end
+      
+      class ComputeEngine
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          collection :disk_names, as: 'diskNames'
+          property :instance_name, as: 'instanceName'
+          property :machine_type, as: 'machineType'
+          property :zone, as: 'zone'
+        end
+      end
+      
+      class ContainerKilledEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :action_id, as: 'actionId'
+        end
+      end
+      
+      class ContainerStartedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :action_id, as: 'actionId'
+          property :ip_address, as: 'ipAddress'
+          hash :port_mappings, as: 'portMappings'
+        end
+      end
+      
+      class ContainerStoppedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :action_id, as: 'actionId'
+          property :exit_status, as: 'exitStatus'
+          property :stderr, as: 'stderr'
+        end
+      end
+      
+      class DelayedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :cause, as: 'cause'
+          collection :metrics, as: 'metrics'
+        end
+      end
+      
+      class Empty
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+        end
+      end
+      
+      class Event
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :description, as: 'description'
+          hash :details, as: 'details'
+          property :timestamp, as: 'timestamp'
+        end
+      end
+      
+      class FailedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :cause, as: 'cause'
+          property :code, as: 'code'
+        end
+      end
+      
+      class ListOperationsResponse
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :next_page_token, as: 'nextPageToken'
+          collection :operations, as: 'operations', class: Google::Apis::GenomicsV1::Operation, decorator: Google::Apis::GenomicsV1::Operation::Representation
+      
+        end
+      end
+      
+      class Operation
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :done, as: 'done'
+          property :error, as: 'error', class: Google::Apis::GenomicsV1::Status, decorator: Google::Apis::GenomicsV1::Status::Representation
+      
+          hash :metadata, as: 'metadata'
+          property :name, as: 'name'
+          hash :response, as: 'response'
+        end
+      end
+      
+      class OperationEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :description, as: 'description'
+          property :end_time, as: 'endTime'
+          property :start_time, as: 'startTime'
+        end
+      end
+      
+      class OperationMetadata
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :client_id, as: 'clientId'
+          property :create_time, as: 'createTime'
+          property :end_time, as: 'endTime'
+          collection :events, as: 'events', class: Google::Apis::GenomicsV1::OperationEvent, decorator: Google::Apis::GenomicsV1::OperationEvent::Representation
+      
+          hash :labels, as: 'labels'
+          property :project_id, as: 'projectId'
+          hash :request, as: 'request'
+          hash :runtime_metadata, as: 'runtimeMetadata'
+          property :start_time, as: 'startTime'
+        end
+      end
+      
+      class PullStartedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :image_uri, as: 'imageUri'
+        end
+      end
+      
+      class PullStoppedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :image_uri, as: 'imageUri'
+        end
+      end
+      
+      class RunPipelineResponse
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+        end
+      end
+      
+      class RuntimeMetadata
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :compute_engine, as: 'computeEngine', class: Google::Apis::GenomicsV1::ComputeEngine, decorator: Google::Apis::GenomicsV1::ComputeEngine::Representation
+      
+        end
+      end
+      
+      class Status
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :code, as: 'code'
+          collection :details, as: 'details'
+          property :message, as: 'message'
+        end
+      end
+      
+      class UnexpectedExitStatusEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :action_id, as: 'actionId'
+          property :exit_status, as: 'exitStatus'
+        end
+      end
+      
+      class WorkerAssignedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :instance, as: 'instance'
+          property :machine_type, as: 'machineType'
+          property :zone, as: 'zone'
+        end
+      end
+      
+      class WorkerReleasedEvent
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :instance, as: 'instance'
+          property :zone, as: 'zone'
+        end
+      end
+    end
+  end
+end

data/lib/google/apis/genomics_v1/service.rb

@@ -0,0 +1,189 @@
+# Copyright 2020 Google LLC
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+require 'google/apis/core/base_service'
+require 'google/apis/core/json_representation'
+require 'google/apis/core/hashable'
+require 'google/apis/errors'
+
+module Google
+  module Apis
+    module GenomicsV1
+      # Genomics API
+      #
+      # Uploads, processes, queries, and searches Genomics data in the cloud.
+      #
+      # @example
+      #    require 'google/apis/genomics_v1'
+      #
+      #    Genomics = Google::Apis::GenomicsV1 # Alias the module
+      #    service = Genomics::GenomicsService.new
+      #
+      # @see https://cloud.google.com/genomics
+      class GenomicsService < Google::Apis::Core::BaseService
+        # @return [String]
+        #  API key. Your API key identifies your project and provides you with API access,
+        #  quota, and reports. Required unless you provide an OAuth 2.0 token.
+        attr_accessor :key
+
+        # @return [String]
+        #  Available to use for quota purposes for server-side applications. Can be any
+        #  arbitrary string assigned to a user, but should not exceed 40 characters.
+        attr_accessor :quota_user
+
+        def initialize
+          super('https://genomics.googleapis.com/', '',
+                client_name: 'google-apis-genomics_v1',
+                client_version: Google::Apis::GenomicsV1::GEM_VERSION)
+          @batch_path = 'batch'
+        end
+        
+        # Starts asynchronous cancellation on a long-running operation. The server makes
+        # a best effort to cancel the operation, but success is not guaranteed. Clients
+        # may use Operations.GetOperation or Operations.ListOperations to check whether
+        # the cancellation succeeded or the operation completed despite cancellation.
+        # Authorization requires the following [Google IAM](https://cloud.google.com/iam)
+        # permission: * `genomics.operations.cancel`
+        # @param [String] name
+        #   The name of the operation resource to be cancelled.
+        # @param [Google::Apis::GenomicsV1::CancelOperationRequest] cancel_operation_request_object
+        # @param [String] fields
+        #   Selector specifying which fields to include in a partial response.
+        # @param [String] quota_user
+        #   Available to use for quota purposes for server-side applications. Can be any
+        #   arbitrary string assigned to a user, but should not exceed 40 characters.
+        # @param [Google::Apis::RequestOptions] options
+        #   Request-specific options
+        #
+        # @yield [result, err] Result & error if block supplied
+        # @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
+        # @yieldparam err [StandardError] error object if request failed
+        #
+        # @return [Google::Apis::GenomicsV1::Empty]
+        #
+        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
+        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
+        # @raise [Google::Apis::AuthorizationError] Authorization is required
+        def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
+          command = make_simple_command(:post, 'v1/{+name}:cancel', options)
+          command.request_representation = Google::Apis::GenomicsV1::CancelOperationRequest::Representation
+          command.request_object = cancel_operation_request_object
+          command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
+          command.response_class = Google::Apis::GenomicsV1::Empty
+          command.params['name'] = name unless name.nil?
+          command.query['fields'] = fields unless fields.nil?
+          command.query['quotaUser'] = quota_user unless quota_user.nil?
+          execute_or_queue_command(command, &block)
+        end
+        
+        # Gets the latest state of a long-running operation. Clients can use this method
+        # to poll the operation result at intervals as recommended by the API service.
+        # Authorization requires the following [Google IAM](https://cloud.google.com/iam)
+        # permission: * `genomics.operations.get`
+        # @param [String] name
+        #   The name of the operation resource.
+        # @param [String] fields
+        #   Selector specifying which fields to include in a partial response.
+        # @param [String] quota_user
+        #   Available to use for quota purposes for server-side applications. Can be any
+        #   arbitrary string assigned to a user, but should not exceed 40 characters.
+        # @param [Google::Apis::RequestOptions] options
+        #   Request-specific options
+        #
+        # @yield [result, err] Result & error if block supplied
+        # @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
+        # @yieldparam err [StandardError] error object if request failed
+        #
+        # @return [Google::Apis::GenomicsV1::Operation]
+        #
+        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
+        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
+        # @raise [Google::Apis::AuthorizationError] Authorization is required
+        def get_operation(name, fields: nil, quota_user: nil, options: nil, &block)
+          command = make_simple_command(:get, 'v1/{+name}', options)
+          command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
+          command.response_class = Google::Apis::GenomicsV1::Operation
+          command.params['name'] = name unless name.nil?
+          command.query['fields'] = fields unless fields.nil?
+          command.query['quotaUser'] = quota_user unless quota_user.nil?
+          execute_or_queue_command(command, &block)
+        end
+        
+        # Lists operations that match the specified filter in the request. Authorization
+        # requires the following [Google IAM](https://cloud.google.com/iam) permission: *
+        # `genomics.operations.list`
+        # @param [String] name
+        #   The name of the operation's parent resource.
+        # @param [String] filter
+        #   A string for filtering Operations. In v2alpha1, the following filter fields
+        #   are supported: * createTime: The time this job was created * events: The set
+        #   of event (names) that have occurred while running the pipeline. The : operator
+        #   can be used to determine if a particular event has occurred. * error: If the
+        #   pipeline is running, this value is NULL. Once the pipeline finishes, the value
+        #   is the standard Google error code. * labels.key or labels."key with space"
+        #   where key is a label key. * done: If the pipeline is running, this value is
+        #   false. Once the pipeline finishes, the value is true. In v1 and v1alpha2, the
+        #   following filter fields are supported: * projectId: Required. Corresponds to
+        #   OperationMetadata.projectId. * createTime: The time this job was created, in
+        #   seconds from the [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=`
+        #   and/or `<=` operators. * status: Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `
+        #   CANCELED`. Only one status may be specified. * labels.key where key is a label
+        #   key. Examples: * `projectId = my-project AND createTime >= 1432140000` * `
+        #   projectId = my-project AND createTime >= 1432140000 AND createTime <=
+        #   1432150000 AND status = RUNNING` * `projectId = my-project AND labels.color = *
+        #   ` * `projectId = my-project AND labels.color = red`
+        # @param [Fixnum] page_size
+        #   The maximum number of results to return. The maximum value is 256.
+        # @param [String] page_token
+        #   The standard list page token.
+        # @param [String] fields
+        #   Selector specifying which fields to include in a partial response.
+        # @param [String] quota_user
+        #   Available to use for quota purposes for server-side applications. Can be any
+        #   arbitrary string assigned to a user, but should not exceed 40 characters.
+        # @param [Google::Apis::RequestOptions] options
+        #   Request-specific options
+        #
+        # @yield [result, err] Result & error if block supplied
+        # @yieldparam result [Google::Apis::GenomicsV1::ListOperationsResponse] parsed result object
+        # @yieldparam err [StandardError] error object if request failed
+        #
+        # @return [Google::Apis::GenomicsV1::ListOperationsResponse]
+        #
+        # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
+        # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
+        # @raise [Google::Apis::AuthorizationError] Authorization is required
+        def list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
+          command = make_simple_command(:get, 'v1/{+name}', options)
+          command.response_representation = Google::Apis::GenomicsV1::ListOperationsResponse::Representation
+          command.response_class = Google::Apis::GenomicsV1::ListOperationsResponse
+          command.params['name'] = name unless name.nil?
+          command.query['filter'] = filter unless filter.nil?
+          command.query['pageSize'] = page_size unless page_size.nil?
+          command.query['pageToken'] = page_token unless page_token.nil?
+          command.query['fields'] = fields unless fields.nil?
+          command.query['quotaUser'] = quota_user unless quota_user.nil?
+          execute_or_queue_command(command, &block)
+        end
+
+        protected
+
+        def apply_command_defaults(command)
+          command.query['key'] = key unless key.nil?
+          command.query['quotaUser'] = quota_user unless quota_user.nil?
+        end
+      end
+    end
+  end
+end