google-api-client 0.9.pre3 → 0.9.pre4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (307) hide show
  1. checksums.yaml +4 -4
  2. data/.travis.yml +1 -0
  3. data/CHANGELOG.md +14 -2
  4. data/Gemfile +4 -0
  5. data/MIGRATING.md +1 -1
  6. data/README.md +17 -3
  7. data/api_names.yaml +127 -14
  8. data/api_names_out.yaml +5442 -710
  9. data/bin/generate-api +16 -14
  10. data/generated/google/apis/adexchangebuyer_v1_3.rb +1 -1
  11. data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +213 -2
  12. data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +71 -0
  13. data/generated/google/apis/adexchangebuyer_v1_3/service.rb +21 -42
  14. data/generated/google/apis/adexchangeseller_v2_0.rb +1 -1
  15. data/generated/google/apis/adexchangeseller_v2_0/service.rb +15 -29
  16. data/generated/google/apis/admin_datatransfer_v1.rb +37 -0
  17. data/generated/google/apis/admin_datatransfer_v1/classes.rb +267 -0
  18. data/generated/google/apis/admin_datatransfer_v1/representations.rb +118 -0
  19. data/generated/google/apis/admin_datatransfer_v1/service.rb +262 -0
  20. data/generated/google/apis/admin_directory_v1.rb +25 -1
  21. data/generated/google/apis/admin_directory_v1/classes.rb +718 -0
  22. data/generated/google/apis/admin_directory_v1/representations.rb +244 -0
  23. data/generated/google/apis/admin_directory_v1/service.rb +1522 -509
  24. data/generated/google/apis/admin_reports_v1.rb +1 -1
  25. data/generated/google/apis/admin_reports_v1/service.rb +5 -10
  26. data/generated/google/apis/adsense_v1_4.rb +1 -1
  27. data/generated/google/apis/adsense_v1_4/classes.rb +6 -0
  28. data/generated/google/apis/adsense_v1_4/representations.rb +1 -0
  29. data/generated/google/apis/adsense_v1_4/service.rb +40 -78
  30. data/generated/google/apis/adsensehost_v4_1.rb +1 -1
  31. data/generated/google/apis/adsensehost_v4_1/service.rb +26 -52
  32. data/generated/google/apis/analytics_v3.rb +1 -1
  33. data/generated/google/apis/analytics_v3/classes.rb +11 -13
  34. data/generated/google/apis/analytics_v3/service.rb +84 -158
  35. data/generated/google/apis/androidenterprise_v1.rb +2 -2
  36. data/generated/google/apis/androidenterprise_v1/classes.rb +276 -8
  37. data/generated/google/apis/androidenterprise_v1/representations.rb +106 -0
  38. data/generated/google/apis/androidenterprise_v1/service.rb +715 -97
  39. data/generated/google/apis/androidpublisher_v2.rb +1 -1
  40. data/generated/google/apis/androidpublisher_v2/classes.rb +2 -2
  41. data/generated/google/apis/androidpublisher_v2/service.rb +55 -107
  42. data/generated/google/apis/appengine_v1beta4.rb +35 -0
  43. data/generated/google/apis/appengine_v1beta4/classes.rb +1532 -0
  44. data/generated/google/apis/appengine_v1beta4/representations.rb +526 -0
  45. data/generated/google/apis/appengine_v1beta4/service.rb +476 -0
  46. data/generated/google/apis/appsactivity_v1.rb +1 -1
  47. data/generated/google/apis/appsactivity_v1/service.rb +1 -2
  48. data/generated/google/apis/appstate_v1.rb +1 -1
  49. data/generated/google/apis/appstate_v1/service.rb +6 -11
  50. data/generated/google/apis/autoscaler_v1beta2/service.rb +10 -20
  51. data/generated/google/apis/bigquery_v2.rb +4 -1
  52. data/generated/google/apis/bigquery_v2/classes.rb +231 -16
  53. data/generated/google/apis/bigquery_v2/representations.rb +62 -0
  54. data/generated/google/apis/bigquery_v2/service.rb +24 -45
  55. data/generated/google/apis/blogger_v3/service.rb +33 -66
  56. data/generated/google/apis/books_v1.rb +1 -1
  57. data/generated/google/apis/books_v1/classes.rb +441 -0
  58. data/generated/google/apis/books_v1/representations.rb +177 -0
  59. data/generated/google/apis/books_v1/service.rb +210 -90
  60. data/generated/google/apis/calendar_v3.rb +1 -1
  61. data/generated/google/apis/calendar_v3/classes.rb +34 -18
  62. data/generated/google/apis/calendar_v3/service.rb +118 -103
  63. data/generated/google/apis/civicinfo_v2.rb +1 -1
  64. data/generated/google/apis/civicinfo_v2/classes.rb +12 -3
  65. data/generated/google/apis/civicinfo_v2/representations.rb +1 -0
  66. data/generated/google/apis/civicinfo_v2/service.rb +5 -10
  67. data/generated/google/apis/classroom_v1.rb +49 -0
  68. data/generated/google/apis/classroom_v1/classes.rb +512 -0
  69. data/generated/google/apis/classroom_v1/representations.rb +217 -0
  70. data/generated/google/apis/classroom_v1/service.rb +970 -0
  71. data/generated/google/apis/cloudbilling_v1.rb +35 -0
  72. data/generated/google/apis/cloudbilling_v1/classes.rb +169 -0
  73. data/generated/google/apis/cloudbilling_v1/representations.rb +79 -0
  74. data/generated/google/apis/cloudbilling_v1/service.rb +258 -0
  75. data/generated/google/apis/clouddebugger_v2.rb +41 -0
  76. data/generated/google/apis/clouddebugger_v2/classes.rb +1004 -0
  77. data/generated/google/apis/clouddebugger_v2/representations.rb +410 -0
  78. data/generated/google/apis/clouddebugger_v2/service.rb +370 -0
  79. data/generated/google/apis/cloudmonitoring_v2beta2.rb +1 -1
  80. data/generated/google/apis/cloudmonitoring_v2beta2/service.rb +6 -12
  81. data/generated/google/apis/cloudresourcemanager_v1beta1.rb +5 -2
  82. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +173 -249
  83. data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +36 -68
  84. data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +293 -80
  85. data/generated/google/apis/cloudtrace_v1.rb +35 -0
  86. data/generated/google/apis/cloudtrace_v1/classes.rb +188 -0
  87. data/generated/google/apis/cloudtrace_v1/representations.rb +92 -0
  88. data/generated/google/apis/cloudtrace_v1/service.rb +190 -0
  89. data/generated/google/apis/clouduseraccounts_beta.rb +43 -0
  90. data/generated/google/apis/clouduseraccounts_beta/classes.rb +823 -0
  91. data/generated/google/apis/clouduseraccounts_beta/representations.rb +313 -0
  92. data/generated/google/apis/clouduseraccounts_beta/service.rb +854 -0
  93. data/generated/google/apis/compute_beta.rb +49 -0
  94. data/generated/google/apis/compute_beta/classes.rb +9128 -0
  95. data/generated/google/apis/compute_beta/representations.rb +3048 -0
  96. data/generated/google/apis/compute_beta/service.rb +10154 -0
  97. data/generated/google/apis/compute_v1.rb +1 -1
  98. data/generated/google/apis/compute_v1/classes.rb +1305 -520
  99. data/generated/google/apis/compute_v1/representations.rb +122 -15
  100. data/generated/google/apis/compute_v1/service.rb +2202 -1085
  101. data/generated/google/apis/container_v1.rb +1 -1
  102. data/generated/google/apis/container_v1/classes.rb +56 -31
  103. data/generated/google/apis/container_v1/representations.rb +12 -0
  104. data/generated/google/apis/container_v1/service.rb +62 -41
  105. data/generated/google/apis/content_v2.rb +2 -2
  106. data/generated/google/apis/content_v2/classes.rb +2252 -56
  107. data/generated/google/apis/content_v2/representations.rb +917 -87
  108. data/generated/google/apis/content_v2/service.rb +680 -85
  109. data/generated/google/apis/coordinate_v1.rb +1 -1
  110. data/generated/google/apis/coordinate_v1/service.rb +16 -25
  111. data/generated/google/apis/customsearch_v1/service.rb +1 -2
  112. data/generated/google/apis/datastore_v1beta2.rb +1 -1
  113. data/generated/google/apis/datastore_v1beta2/service.rb +12 -18
  114. data/generated/google/apis/deploymentmanager_v2.rb +44 -0
  115. data/generated/google/apis/deploymentmanager_v2/classes.rb +1089 -0
  116. data/generated/google/apis/deploymentmanager_v2/representations.rb +422 -0
  117. data/generated/google/apis/deploymentmanager_v2/service.rb +857 -0
  118. data/generated/google/apis/deploymentmanager_v2beta2.rb +5 -2
  119. data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +22 -3
  120. data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +3 -0
  121. data/generated/google/apis/deploymentmanager_v2beta2/service.rb +14 -27
  122. data/generated/google/apis/dfareporting_v2_1.rb +1 -1
  123. data/generated/google/apis/dfareporting_v2_1/classes.rb +29 -14
  124. data/generated/google/apis/dfareporting_v2_1/service.rb +196 -389
  125. data/generated/google/apis/discovery_v1/classes.rb +7 -0
  126. data/generated/google/apis/discovery_v1/representations.rb +1 -0
  127. data/generated/google/apis/discovery_v1/service.rb +2 -4
  128. data/generated/google/apis/dns_v1.rb +4 -1
  129. data/generated/google/apis/dns_v1/service.rb +9 -18
  130. data/generated/google/apis/doubleclickbidmanager_v1.rb +1 -1
  131. data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +9 -2
  132. data/generated/google/apis/doubleclickbidmanager_v1/representations.rb +1 -0
  133. data/generated/google/apis/doubleclickbidmanager_v1/service.rb +8 -16
  134. data/generated/google/apis/doubleclicksearch_v2.rb +1 -1
  135. data/generated/google/apis/doubleclicksearch_v2/classes.rb +15 -6
  136. data/generated/google/apis/doubleclicksearch_v2/representations.rb +1 -0
  137. data/generated/google/apis/doubleclicksearch_v2/service.rb +13 -23
  138. data/generated/google/apis/drive_v2.rb +1 -1
  139. data/generated/google/apis/drive_v2/classes.rb +73 -30
  140. data/generated/google/apis/drive_v2/representations.rb +14 -0
  141. data/generated/google/apis/drive_v2/service.rb +139 -135
  142. data/generated/google/apis/drive_v3.rb +55 -0
  143. data/generated/google/apis/drive_v3/classes.rb +1534 -0
  144. data/generated/google/apis/drive_v3/representations.rb +497 -0
  145. data/generated/google/apis/drive_v3/service.rb +1541 -0
  146. data/generated/google/apis/fitness_v1.rb +1 -1
  147. data/generated/google/apis/fitness_v1/service.rb +14 -27
  148. data/generated/google/apis/fusiontables_v2/service.rb +40 -73
  149. data/generated/google/apis/games_configuration_v1configuration.rb +1 -1
  150. data/generated/google/apis/games_configuration_v1configuration/service.rb +14 -27
  151. data/generated/google/apis/games_management_v1management.rb +37 -0
  152. data/generated/google/apis/games_management_v1management/classes.rb +524 -0
  153. data/generated/google/apis/games_management_v1management/representations.rb +231 -0
  154. data/generated/google/apis/games_management_v1management/service.rb +994 -0
  155. data/generated/google/apis/games_v1.rb +1 -1
  156. data/generated/google/apis/games_v1/classes.rb +39 -0
  157. data/generated/google/apis/games_v1/representations.rb +14 -0
  158. data/generated/google/apis/games_v1/service.rb +93 -109
  159. data/generated/google/apis/gan_v1beta1/service.rb +10 -20
  160. data/generated/google/apis/genomics_v1.rb +5 -3
  161. data/generated/google/apis/genomics_v1/classes.rb +519 -200
  162. data/generated/google/apis/genomics_v1/representations.rb +126 -13
  163. data/generated/google/apis/genomics_v1/service.rb +392 -236
  164. data/generated/google/apis/gmail_v1.rb +4 -1
  165. data/generated/google/apis/gmail_v1/service.rb +39 -71
  166. data/generated/google/apis/groupsmigration_v1/service.rb +2 -3
  167. data/generated/google/apis/groupssettings_v1/service.rb +3 -6
  168. data/generated/google/apis/identitytoolkit_v3.rb +1 -1
  169. data/generated/google/apis/identitytoolkit_v3/classes.rb +125 -0
  170. data/generated/google/apis/identitytoolkit_v3/representations.rb +37 -0
  171. data/generated/google/apis/identitytoolkit_v3/service.rb +44 -24
  172. data/generated/google/apis/kgsearch_v1.rb +32 -0
  173. data/generated/google/apis/kgsearch_v1/classes.rb +59 -0
  174. data/generated/google/apis/kgsearch_v1/representations.rb +39 -0
  175. data/generated/google/apis/kgsearch_v1/service.rb +111 -0
  176. data/generated/google/apis/licensing_v1.rb +1 -1
  177. data/generated/google/apis/licensing_v1/service.rb +7 -14
  178. data/generated/google/apis/logging_v1beta3.rb +16 -4
  179. data/generated/google/apis/logging_v1beta3/classes.rb +620 -46
  180. data/generated/google/apis/logging_v1beta3/representations.rb +144 -0
  181. data/generated/google/apis/logging_v1beta3/service.rb +435 -104
  182. data/generated/google/apis/manager_v1beta2.rb +3 -0
  183. data/generated/google/apis/manager_v1beta2/service.rb +8 -16
  184. data/generated/google/apis/mapsengine_v1.rb +1 -1
  185. data/generated/google/apis/mapsengine_v1/service.rb +85 -162
  186. data/generated/google/apis/mirror_v1.rb +1 -1
  187. data/generated/google/apis/mirror_v1/service.rb +28 -52
  188. data/generated/google/apis/oauth2_v2.rb +1 -1
  189. data/generated/google/apis/oauth2_v2/service.rb +4 -8
  190. data/generated/google/apis/pagespeedonline_v2/service.rb +1 -2
  191. data/generated/google/apis/partners_v2.rb +32 -0
  192. data/generated/google/apis/partners_v2/classes.rb +942 -0
  193. data/generated/google/apis/partners_v2/representations.rb +402 -0
  194. data/generated/google/apis/partners_v2/service.rb +400 -0
  195. data/generated/google/apis/plus_domains_v1.rb +1 -1
  196. data/generated/google/apis/plus_domains_v1/classes.rb +207 -0
  197. data/generated/google/apis/plus_domains_v1/representations.rb +114 -0
  198. data/generated/google/apis/plus_domains_v1/service.rb +21 -41
  199. data/generated/google/apis/plus_v1.rb +1 -1
  200. data/generated/google/apis/plus_v1/classes.rb +207 -0
  201. data/generated/google/apis/plus_v1/representations.rb +114 -0
  202. data/generated/google/apis/plus_v1/service.rb +11 -56
  203. data/generated/google/apis/prediction_v1_6.rb +1 -1
  204. data/generated/google/apis/prediction_v1_6/service.rb +8 -16
  205. data/generated/google/apis/proximitybeacon_v1beta1.rb +31 -0
  206. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +639 -0
  207. data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +274 -0
  208. data/generated/google/apis/proximitybeacon_v1beta1/service.rb +591 -0
  209. data/generated/google/apis/pubsub_v1.rb +37 -0
  210. data/generated/google/apis/pubsub_v1/classes.rb +614 -0
  211. data/generated/google/apis/pubsub_v1/representations.rb +281 -0
  212. data/generated/google/apis/pubsub_v1/service.rb +774 -0
  213. data/generated/google/apis/pubsub_v1beta2.rb +1 -1
  214. data/generated/google/apis/pubsub_v1beta2/classes.rb +78 -283
  215. data/generated/google/apis/pubsub_v1beta2/representations.rb +1 -85
  216. data/generated/google/apis/pubsub_v1beta2/service.rb +79 -87
  217. data/generated/google/apis/qpx_express_v1/service.rb +1 -2
  218. data/generated/google/apis/replicapool_v1beta2.rb +3 -0
  219. data/generated/google/apis/replicapool_v1beta2/service.rb +12 -24
  220. data/generated/google/apis/replicapoolupdater_v1beta1.rb +4 -1
  221. data/generated/google/apis/replicapoolupdater_v1beta1/classes.rb +46 -2
  222. data/generated/google/apis/replicapoolupdater_v1beta1/representations.rb +16 -0
  223. data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +58 -18
  224. data/generated/google/apis/reseller_v1.rb +1 -1
  225. data/generated/google/apis/reseller_v1/classes.rb +19 -1
  226. data/generated/google/apis/reseller_v1/representations.rb +1 -0
  227. data/generated/google/apis/reseller_v1/service.rb +16 -30
  228. data/generated/google/apis/resourceviews_v1beta2.rb +3 -0
  229. data/generated/google/apis/resourceviews_v1beta2/service.rb +16 -27
  230. data/generated/google/apis/script_v1.rb +61 -0
  231. data/generated/google/apis/script_v1/classes.rb +259 -0
  232. data/generated/google/apis/script_v1/representations.rb +106 -0
  233. data/generated/google/apis/script_v1/service.rb +98 -0
  234. data/generated/google/apis/site_verification_v1.rb +1 -1
  235. data/generated/google/apis/site_verification_v1/service.rb +8 -15
  236. data/generated/google/apis/sqladmin_v1beta4.rb +1 -1
  237. data/generated/google/apis/sqladmin_v1beta4/classes.rb +186 -2
  238. data/generated/google/apis/sqladmin_v1beta4/representations.rb +70 -0
  239. data/generated/google/apis/sqladmin_v1beta4/service.rb +166 -75
  240. data/generated/google/apis/storage_v1.rb +5 -2
  241. data/generated/google/apis/storage_v1/classes.rb +47 -4
  242. data/generated/google/apis/storage_v1/representations.rb +18 -0
  243. data/generated/google/apis/storage_v1/service.rb +77 -94
  244. data/generated/google/apis/storagetransfer_v1.rb +35 -0
  245. data/generated/google/apis/storagetransfer_v1/classes.rb +1046 -0
  246. data/generated/google/apis/storagetransfer_v1/representations.rb +370 -0
  247. data/generated/google/apis/storagetransfer_v1/service.rb +473 -0
  248. data/generated/google/apis/tagmanager_v1.rb +1 -1
  249. data/generated/google/apis/tagmanager_v1/classes.rb +189 -31
  250. data/generated/google/apis/tagmanager_v1/representations.rb +69 -15
  251. data/generated/google/apis/tagmanager_v1/service.rb +114 -275
  252. data/generated/google/apis/taskqueue_v1beta2/service.rb +8 -16
  253. data/generated/google/apis/tasks_v1/service.rb +14 -28
  254. data/generated/google/apis/translate_v2/service.rb +3 -6
  255. data/generated/google/apis/urlshortener_v1/service.rb +3 -6
  256. data/generated/google/apis/webmasters_v3.rb +3 -3
  257. data/generated/google/apis/webmasters_v3/classes.rb +4 -4
  258. data/generated/google/apis/webmasters_v3/service.rb +16 -30
  259. data/generated/google/apis/youtube_analytics_v1.rb +1 -1
  260. data/generated/google/apis/youtube_analytics_v1/classes.rb +6 -0
  261. data/generated/google/apis/youtube_analytics_v1/representations.rb +1 -0
  262. data/generated/google/apis/youtube_analytics_v1/service.rb +16 -21
  263. data/generated/google/apis/youtube_v3.rb +1 -1
  264. data/generated/google/apis/youtube_v3/classes.rb +111 -78
  265. data/generated/google/apis/youtube_v3/representations.rb +2 -0
  266. data/generated/google/apis/youtube_v3/service.rb +78 -246
  267. data/generated/google/apis/youtubereporting_v1.rb +38 -0
  268. data/generated/google/apis/youtubereporting_v1/classes.rb +258 -0
  269. data/generated/google/apis/youtubereporting_v1/representations.rb +128 -0
  270. data/generated/google/apis/youtubereporting_v1/service.rb +364 -0
  271. data/google-api-client.gemspec +3 -3
  272. data/lib/google/api_client/auth/installed_app.rb +2 -2
  273. data/lib/google/api_client/auth/key_utils.rb +1 -0
  274. data/lib/google/api_client/auth/storage.rb +1 -0
  275. data/lib/google/api_client/auth/storages/file_store.rb +1 -0
  276. data/lib/google/api_client/auth/storages/redis_store.rb +1 -0
  277. data/lib/google/api_client/client_secrets.rb +4 -5
  278. data/lib/google/apis/core/api_command.rb +2 -2
  279. data/lib/google/apis/core/base_service.rb +1 -0
  280. data/lib/google/apis/core/batch.rb +25 -8
  281. data/lib/google/apis/core/download.rb +1 -1
  282. data/lib/google/apis/core/http_command.rb +24 -12
  283. data/lib/google/apis/core/multipart.rb +20 -6
  284. data/lib/google/apis/core/upload.rb +11 -4
  285. data/lib/google/apis/generator/annotator.rb +29 -10
  286. data/lib/google/apis/generator/helpers.rb +1 -1
  287. data/lib/google/apis/generator/templates/_method.tmpl +5 -6
  288. data/lib/google/apis/options.rb +7 -3
  289. data/lib/google/apis/version.rb +1 -1
  290. data/samples/calendar/calendar.rb +1 -1
  291. data/samples/drive/drive.rb +9 -2
  292. data/samples/pubsub/pubsub.rb +5 -6
  293. data/samples/translate/translate.rb +1 -5
  294. data/script/generate +20 -5
  295. data/spec/fixtures/files/child/.gitignore +0 -0
  296. data/spec/fixtures/files/invalid.json +1 -0
  297. data/spec/google/api_client/client_secrets_spec.rb +38 -1
  298. data/spec/google/apis/core/batch_spec.rb +22 -8
  299. data/spec/google/apis/core/download_spec.rb +13 -0
  300. data/spec/google/apis/core/http_command_spec.rb +26 -9
  301. data/spec/google/apis/core/upload_spec.rb +65 -17
  302. data/spec/google/apis/options_spec.rb +8 -0
  303. data/spec/integration_tests/adsense_spec.rb +28 -0
  304. data/spec/integration_tests/pubsub_spec.rb +3 -3
  305. data/spec/spec_helper.rb +5 -1
  306. data/third_party/hurley_patches.rb +103 -0
  307. metadata +87 -7
@@ -84,8 +84,7 @@ module Google
84
84
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
85
85
  # @raise [Google::Apis::AuthorizationError] Authorization is required
86
86
  def get_advertiser(role, role_id, advertiser_id: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
87
- path = '{role}/{roleId}/advertiser'
88
- command = make_simple_command(:get, path, options)
87
+ command = make_simple_command(:get, '{role}/{roleId}/advertiser', options)
89
88
  command.response_representation = Google::Apis::GanV1beta1::Advertiser::Representation
90
89
  command.response_class = Google::Apis::GanV1beta1::Advertiser
91
90
  command.params['role'] = role unless role.nil?
@@ -149,8 +148,7 @@ module Google
149
148
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
150
149
  # @raise [Google::Apis::AuthorizationError] Authorization is required
151
150
  def list_advertisers(role, role_id, advertiser_category: nil, max_results: nil, min_ninety_day_epc: nil, min_payout_rank: nil, min_seven_day_epc: nil, page_token: nil, relationship_status: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
152
- path = '{role}/{roleId}/advertisers'
153
- command = make_simple_command(:get, path, options)
151
+ command = make_simple_command(:get, '{role}/{roleId}/advertisers', options)
154
152
  command.response_representation = Google::Apis::GanV1beta1::Advertisers::Representation
155
153
  command.response_class = Google::Apis::GanV1beta1::Advertisers
156
154
  command.params['role'] = role unless role.nil?
@@ -198,8 +196,7 @@ module Google
198
196
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
199
197
  # @raise [Google::Apis::AuthorizationError] Authorization is required
200
198
  def list_cc_offers(publisher, advertiser: nil, projection: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
201
- path = 'publishers/{publisher}/ccOffers'
202
- command = make_simple_command(:get, path, options)
199
+ command = make_simple_command(:get, 'publishers/{publisher}/ccOffers', options)
203
200
  command.response_representation = Google::Apis::GanV1beta1::CcOffers::Representation
204
201
  command.response_class = Google::Apis::GanV1beta1::CcOffers
205
202
  command.params['publisher'] = publisher unless publisher.nil?
@@ -287,8 +284,7 @@ module Google
287
284
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
288
285
  # @raise [Google::Apis::AuthorizationError] Authorization is required
289
286
  def list_events(role, role_id, advertiser_id: nil, charge_type: nil, event_date_max: nil, event_date_min: nil, link_id: nil, max_results: nil, member_id: nil, modify_date_max: nil, modify_date_min: nil, order_id: nil, page_token: nil, product_category: nil, publisher_id: nil, sku: nil, status: nil, type: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
290
- path = '{role}/{roleId}/events'
291
- command = make_simple_command(:get, path, options)
287
+ command = make_simple_command(:get, '{role}/{roleId}/events', options)
292
288
  command.response_representation = Google::Apis::GanV1beta1::Events::Representation
293
289
  command.response_class = Google::Apis::GanV1beta1::Events
294
290
  command.params['role'] = role unless role.nil?
@@ -347,8 +343,7 @@ module Google
347
343
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
348
344
  # @raise [Google::Apis::AuthorizationError] Authorization is required
349
345
  def get_link(role, role_id, link_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
350
- path = '{role}/{roleId}/link/{linkId}'
351
- command = make_simple_command(:get, path, options)
346
+ command = make_simple_command(:get, '{role}/{roleId}/link/{linkId}', options)
352
347
  command.response_representation = Google::Apis::GanV1beta1::Link::Representation
353
348
  command.response_class = Google::Apis::GanV1beta1::Link
354
349
  command.params['role'] = role unless role.nil?
@@ -388,8 +383,7 @@ module Google
388
383
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
389
384
  # @raise [Google::Apis::AuthorizationError] Authorization is required
390
385
  def insert_link(role, role_id, link_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
391
- path = '{role}/{roleId}/link'
392
- command = make_simple_command(:post, path, options)
386
+ command = make_simple_command(:post, '{role}/{roleId}/link', options)
393
387
  command.request_representation = Google::Apis::GanV1beta1::Link::Representation
394
388
  command.request_object = link_object
395
389
  command.response_representation = Google::Apis::GanV1beta1::Link::Representation
@@ -456,8 +450,7 @@ module Google
456
450
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
457
451
  # @raise [Google::Apis::AuthorizationError] Authorization is required
458
452
  def list_links(role, role_id, advertiser_id: nil, asset_size: nil, authorship: nil, create_date_max: nil, create_date_min: nil, link_type: nil, max_results: nil, page_token: nil, promotion_type: nil, relationship_status: nil, search_text: nil, start_date_max: nil, start_date_min: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
459
- path = '{role}/{roleId}/links'
460
- command = make_simple_command(:get, path, options)
453
+ command = make_simple_command(:get, '{role}/{roleId}/links', options)
461
454
  command.response_representation = Google::Apis::GanV1beta1::Links::Representation
462
455
  command.response_class = Google::Apis::GanV1beta1::Links
463
456
  command.params['role'] = role unless role.nil?
@@ -513,8 +506,7 @@ module Google
513
506
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
514
507
  # @raise [Google::Apis::AuthorizationError] Authorization is required
515
508
  def get_publisher(role, role_id, publisher_id: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
516
- path = '{role}/{roleId}/publisher'
517
- command = make_simple_command(:get, path, options)
509
+ command = make_simple_command(:get, '{role}/{roleId}/publisher', options)
518
510
  command.response_representation = Google::Apis::GanV1beta1::Publisher::Representation
519
511
  command.response_class = Google::Apis::GanV1beta1::Publisher
520
512
  command.params['role'] = role unless role.nil?
@@ -578,8 +570,7 @@ module Google
578
570
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
579
571
  # @raise [Google::Apis::AuthorizationError] Authorization is required
580
572
  def list_publishers(role, role_id, max_results: nil, min_ninety_day_epc: nil, min_payout_rank: nil, min_seven_day_epc: nil, page_token: nil, publisher_category: nil, relationship_status: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
581
- path = '{role}/{roleId}/publishers'
582
- command = make_simple_command(:get, path, options)
573
+ command = make_simple_command(:get, '{role}/{roleId}/publishers', options)
583
574
  command.response_representation = Google::Apis::GanV1beta1::Publishers::Representation
584
575
  command.response_class = Google::Apis::GanV1beta1::Publishers
585
576
  command.params['role'] = role unless role.nil?
@@ -655,8 +646,7 @@ module Google
655
646
  # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
656
647
  # @raise [Google::Apis::AuthorizationError] Authorization is required
657
648
  def get_report(role, role_id, report_type, advertiser_id: nil, calculate_totals: nil, end_date: nil, event_type: nil, link_id: nil, max_results: nil, order_id: nil, publisher_id: nil, start_date: nil, start_index: nil, status: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
658
- path = '{role}/{roleId}/report/{reportType}'
659
- command = make_simple_command(:get, path, options)
649
+ command = make_simple_command(:get, '{role}/{roleId}/report/{reportType}', options)
660
650
  command.response_representation = Google::Apis::GanV1beta1::Report::Representation
661
651
  command.response_class = Google::Apis::GanV1beta1::Report
662
652
  command.params['role'] = role unless role.nil?
@@ -20,13 +20,15 @@ module Google
20
20
  module Apis
21
21
  # Genomics API
22
22
  #
23
- # An API to store, process, explore, and share DNA sequence reads, reference-
24
- # based alignments, and variant calls.
23
+ # An API to store, process, explore, and share genomic data. It supports
24
+ # reference-based alignements, genetic variants, and reference genomes. This API
25
+ # provides an implementation of the Global Alliance for Genomics and Health (
26
+ # GA4GH) v0.5.1 API as well as several extensions.
25
27
  #
26
28
  # @see
27
29
  module GenomicsV1
28
30
  VERSION = 'V1'
29
- REVISION = '20150723'
31
+ REVISION = '20151215'
30
32
 
31
33
  # View and manage your data in Google BigQuery
32
34
  AUTH_BIGQUERY = 'https://www.googleapis.com/auth/bigquery'
@@ -49,7 +49,9 @@ module Google
49
49
  end
50
50
  end
51
51
 
52
- # A Dataset is a collection of genomic data.
52
+ # A Dataset is a collection of genomic data. For more genomics resource
53
+ # definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/
54
+ # genomics/fundamentals-of-google-genomics)
53
55
  class Dataset
54
56
  include Google::Apis::Core::Hashable
55
57
 
@@ -116,6 +118,175 @@ module Google
116
118
  end
117
119
  end
118
120
 
121
+ # Request message for `SetIamPolicy` method.
122
+ class SetIamPolicyRequest
123
+ include Google::Apis::Core::Hashable
124
+
125
+ # Defines an Identity and Access Management (IAM) policy. It is used to specify
126
+ # access control policies for Cloud Platform resources. A `Policy` consists of a
127
+ # list of `bindings`. A `Binding` binds a list of `members` to a `role`, where
128
+ # the members can be user accounts, Google groups, Google domains, and service
129
+ # accounts. A `role` is a named list of permissions defined by IAM. **Example** `
130
+ # "bindings": [ ` "role": "roles/owner", "members": [ "user:mike@example.com", "
131
+ # group:admins@example.com", "domain:google.com", "serviceAccount:my-other-app@
132
+ # appspot.gserviceaccount.com"] `, ` "role": "roles/viewer", "members": ["user:
133
+ # sean@example.com"] ` ] ` For a description of IAM and its features, see the [
134
+ # IAM developer's guide](https://cloud.google.com/iam).
135
+ # Corresponds to the JSON property `policy`
136
+ # @return [Google::Apis::GenomicsV1::Policy]
137
+ attr_accessor :policy
138
+
139
+ def initialize(**args)
140
+ update!(**args)
141
+ end
142
+
143
+ # Update properties of this object
144
+ def update!(**args)
145
+ @policy = args[:policy] unless args[:policy].nil?
146
+ end
147
+ end
148
+
149
+ # Defines an Identity and Access Management (IAM) policy. It is used to specify
150
+ # access control policies for Cloud Platform resources. A `Policy` consists of a
151
+ # list of `bindings`. A `Binding` binds a list of `members` to a `role`, where
152
+ # the members can be user accounts, Google groups, Google domains, and service
153
+ # accounts. A `role` is a named list of permissions defined by IAM. **Example** `
154
+ # "bindings": [ ` "role": "roles/owner", "members": [ "user:mike@example.com", "
155
+ # group:admins@example.com", "domain:google.com", "serviceAccount:my-other-app@
156
+ # appspot.gserviceaccount.com"] `, ` "role": "roles/viewer", "members": ["user:
157
+ # sean@example.com"] ` ] ` For a description of IAM and its features, see the [
158
+ # IAM developer's guide](https://cloud.google.com/iam).
159
+ class Policy
160
+ include Google::Apis::Core::Hashable
161
+
162
+ # Version of the `Policy`. The default version is 0.
163
+ # Corresponds to the JSON property `version`
164
+ # @return [Fixnum]
165
+ attr_accessor :version
166
+
167
+ # Associates a list of `members` to a `role`. Multiple `bindings` must not be
168
+ # specified for the same `role`. `bindings` with no members will result in an
169
+ # error.
170
+ # Corresponds to the JSON property `bindings`
171
+ # @return [Array<Google::Apis::GenomicsV1::Binding>]
172
+ attr_accessor :bindings
173
+
174
+ # `etag` is used for optimistic concurrency control as a way to help prevent
175
+ # simultaneous updates of a policy from overwriting each other. It is strongly
176
+ # suggested that systems make use of the `etag` in the read-modify-write cycle
177
+ # to perform policy updates in order to avoid race conditions: An `etag` is
178
+ # returned in the response to `getIamPolicy`, and systems are expected to put
179
+ # that etag in the request to `setIamPolicy` to ensure that their change will be
180
+ # applied to the same version of the policy. If no `etag` is provided in the
181
+ # call to `setIamPolicy`, then the existing policy is overwritten blindly.
182
+ # Corresponds to the JSON property `etag`
183
+ # @return [String]
184
+ attr_accessor :etag
185
+
186
+ def initialize(**args)
187
+ update!(**args)
188
+ end
189
+
190
+ # Update properties of this object
191
+ def update!(**args)
192
+ @version = args[:version] unless args[:version].nil?
193
+ @bindings = args[:bindings] unless args[:bindings].nil?
194
+ @etag = args[:etag] unless args[:etag].nil?
195
+ end
196
+ end
197
+
198
+ # Associates `members` with a `role`.
199
+ class Binding
200
+ include Google::Apis::Core::Hashable
201
+
202
+ # Role that is assigned to `members`. For example, `roles/viewer`, `roles/editor`
203
+ # , or `roles/owner`. Required
204
+ # Corresponds to the JSON property `role`
205
+ # @return [String]
206
+ attr_accessor :role
207
+
208
+ # Specifies the identities requesting access for a Cloud Platform resource. `
209
+ # members` can have the following values: * `allUsers`: A special identifier
210
+ # that represents anyone who is on the internet; with or without a Google
211
+ # account. * `allAuthenticatedUsers`: A special identifier that represents
212
+ # anyone who is authenticated with a Google account or a service account. * `
213
+ # user:`emailid``: An email address that represents a specific Google account.
214
+ # For example, `alice@gmail.com` or `joe@example.com`. * `serviceAccount:`
215
+ # emailid``: An email address that represents a service account. For example, `
216
+ # my-other-app@appspot.gserviceaccount.com`. * `group:`emailid``: An email
217
+ # address that represents a Google group. For example, `admins@example.com`. * `
218
+ # domain:`domain``: A Google Apps domain name that represents all the users of
219
+ # that domain. For example, `google.com` or `example.com`.
220
+ # Corresponds to the JSON property `members`
221
+ # @return [Array<String>]
222
+ attr_accessor :members
223
+
224
+ def initialize(**args)
225
+ update!(**args)
226
+ end
227
+
228
+ # Update properties of this object
229
+ def update!(**args)
230
+ @role = args[:role] unless args[:role].nil?
231
+ @members = args[:members] unless args[:members].nil?
232
+ end
233
+ end
234
+
235
+ # Request message for `GetIamPolicy` method.
236
+ class GetIamPolicyRequest
237
+ include Google::Apis::Core::Hashable
238
+
239
+ def initialize(**args)
240
+ update!(**args)
241
+ end
242
+
243
+ # Update properties of this object
244
+ def update!(**args)
245
+ end
246
+ end
247
+
248
+ # Request message for `TestIamPermissions` method.
249
+ class TestIamPermissionsRequest
250
+ include Google::Apis::Core::Hashable
251
+
252
+ # REQUIRED: The set of permissions to check for the 'resource'. Permissions with
253
+ # wildcards (such as '*' or 'storage.*') are not allowed. Allowed permissions
254
+ # are: * `genomics.datasets.create` * `genomics.datasets.delete` * `genomics.
255
+ # datasets.get` * `genomics.datasets.list` * `genomics.datasets.update` * `
256
+ # genomics.datasets.getIamPolicy` * `genomics.datasets.setIamPolicy`
257
+ # Corresponds to the JSON property `permissions`
258
+ # @return [Array<String>]
259
+ attr_accessor :permissions
260
+
261
+ def initialize(**args)
262
+ update!(**args)
263
+ end
264
+
265
+ # Update properties of this object
266
+ def update!(**args)
267
+ @permissions = args[:permissions] unless args[:permissions].nil?
268
+ end
269
+ end
270
+
271
+ # Response message for `TestIamPermissions` method.
272
+ class TestIamPermissionsResponse
273
+ include Google::Apis::Core::Hashable
274
+
275
+ # A subset of `TestPermissionsRequest.permissions` that the caller is allowed.
276
+ # Corresponds to the JSON property `permissions`
277
+ # @return [Array<String>]
278
+ attr_accessor :permissions
279
+
280
+ def initialize(**args)
281
+ update!(**args)
282
+ end
283
+
284
+ # Update properties of this object
285
+ def update!(**args)
286
+ @permissions = args[:permissions] unless args[:permissions].nil?
287
+ end
288
+ end
289
+
119
290
  # This resource represents a long-running operation that is the result of a
120
291
  # network API call.
121
292
  class Operation
@@ -128,14 +299,13 @@ module Google
128
299
  # @return [String]
129
300
  attr_accessor :name
130
301
 
131
- # An [OperationMetadata][google.genomics.v1.OperationMetadata] object. This will
132
- # always be returned with the [Operation][google.longrunning.Operation].
302
+ # An OperationMetadata object. This will always be returned with the Operation.
133
303
  # Corresponds to the JSON property `metadata`
134
304
  # @return [Hash<String,Object>]
135
305
  attr_accessor :metadata
136
306
 
137
307
  # If the value is `false`, it means the operation is still in progress. If true,
138
- # the operation is completed and the `result` is available.
308
+ # the operation is completed, and either `error` or `response` is available.
139
309
  # Corresponds to the JSON property `done`
140
310
  # @return [Boolean]
141
311
  attr_accessor :done
@@ -146,42 +316,40 @@ module Google
146
316
  # gRPC](https://github.com/grpc). The error model is designed to be: - Simple to
147
317
  # use and understand for most users - Flexible enough to meet unexpected needs #
148
318
  # Overview The `Status` message contains three pieces of data: error code, error
149
- # message, and error details. The error code should be an enum value of [google.
150
- # rpc.Code][google.rpc.Code], but it may accept additional error codes if needed.
151
- # The error message should be a developer-facing English message that helps
152
- # developers *understand* and *resolve* the error. If a localized user-facing
153
- # error message is needed, put the localized message in the error details or
154
- # localize it in the client. The optional error details may contain arbitrary
155
- # information about the error. There is a predefined set of error detail types
156
- # in the package `google.rpc` which can be used for common error conditions. #
157
- # Language mapping The `Status` message is the logical representation of the
158
- # error model, but it is not necessarily the actual wire format. When the `
159
- # Status` message is exposed in different client libraries and different wire
160
- # protocols, it can be mapped differently. For example, it will likely be mapped
161
- # to some exceptions in Java, but more likely mapped to some error codes in C. #
162
- # Other uses The error model and the `Status` message can be used in a variety
163
- # of environments, either with or without APIs, to provide a consistent
164
- # developer experience across different environments. Example uses of this error
165
- # model include: - Partial errors. If a service needs to return partial errors
166
- # to the client, it may embed the `Status` in the normal response to indicate
167
- # the partial errors. - Workflow errors. A typical workflow has multiple steps.
168
- # Each step may have a `Status` message for error reporting purpose. - Batch
169
- # operations. If a client uses batch request and batch response, the `Status`
170
- # message should be used directly inside batch response, one for each error sub-
171
- # response. - Asynchronous operations. If an API call embeds asynchronous
172
- # operation results in its response, the status of those operations should be
173
- # represented directly using the `Status` message. - Logging. If some API errors
174
- # are stored in logs, the message `Status` could be used directly after any
175
- # stripping needed for security/privacy reasons.
319
+ # message, and error details. The error code should be an enum value of google.
320
+ # rpc.Code, but it may accept additional error codes if needed. The error
321
+ # message should be a developer-facing English message that helps developers *
322
+ # understand* and *resolve* the error. If a localized user-facing error message
323
+ # is needed, put the localized message in the error details or localize it in
324
+ # the client. The optional error details may contain arbitrary information about
325
+ # the error. There is a predefined set of error detail types in the package `
326
+ # google.rpc` which can be used for common error conditions. # Language mapping
327
+ # The `Status` message is the logical representation of the error model, but it
328
+ # is not necessarily the actual wire format. When the `Status` message is
329
+ # exposed in different client libraries and different wire protocols, it can be
330
+ # mapped differently. For example, it will likely be mapped to some exceptions
331
+ # in Java, but more likely mapped to some error codes in C. # Other uses The
332
+ # error model and the `Status` message can be used in a variety of environments,
333
+ # either with or without APIs, to provide a consistent developer experience
334
+ # across different environments. Example uses of this error model include: -
335
+ # Partial errors. If a service needs to return partial errors to the client, it
336
+ # may embed the `Status` in the normal response to indicate the partial errors. -
337
+ # Workflow errors. A typical workflow has multiple steps. Each step may have a `
338
+ # Status` message for error reporting purpose. - Batch operations. If a client
339
+ # uses batch request and batch response, the `Status` message should be used
340
+ # directly inside batch response, one for each error sub-response. -
341
+ # Asynchronous operations. If an API call embeds asynchronous operation results
342
+ # in its response, the status of those operations should be represented directly
343
+ # using the `Status` message. - Logging. If some API errors are stored in logs,
344
+ # the message `Status` could be used directly after any stripping needed for
345
+ # security/privacy reasons.
176
346
  # Corresponds to the JSON property `error`
177
347
  # @return [Google::Apis::GenomicsV1::Status]
178
348
  attr_accessor :error
179
349
 
180
- # If importing [ReadGroupSets][google.genomics.v1.ReadGroupSet], an [
181
- # ImportReadGroupSetsResponse][google.genomics.v1.ImportReadGroupSetsResponse]
182
- # is returned. If importing [Variants][google.genomics.v1.Variant], an [
183
- # ImportVariantsResponse][google.genomics.v1.ImportVariantsResponse] is returned.
184
- # For exports, an empty response is returned.
350
+ # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
351
+ # importing Variants, an ImportVariantsResponse is returned. For exports, an
352
+ # empty response is returned.
185
353
  # Corresponds to the JSON property `response`
186
354
  # @return [Hash<String,Object>]
187
355
  attr_accessor :response
@@ -205,45 +373,44 @@ module Google
205
373
  # gRPC](https://github.com/grpc). The error model is designed to be: - Simple to
206
374
  # use and understand for most users - Flexible enough to meet unexpected needs #
207
375
  # Overview The `Status` message contains three pieces of data: error code, error
208
- # message, and error details. The error code should be an enum value of [google.
209
- # rpc.Code][google.rpc.Code], but it may accept additional error codes if needed.
210
- # The error message should be a developer-facing English message that helps
211
- # developers *understand* and *resolve* the error. If a localized user-facing
212
- # error message is needed, put the localized message in the error details or
213
- # localize it in the client. The optional error details may contain arbitrary
214
- # information about the error. There is a predefined set of error detail types
215
- # in the package `google.rpc` which can be used for common error conditions. #
216
- # Language mapping The `Status` message is the logical representation of the
217
- # error model, but it is not necessarily the actual wire format. When the `
218
- # Status` message is exposed in different client libraries and different wire
219
- # protocols, it can be mapped differently. For example, it will likely be mapped
220
- # to some exceptions in Java, but more likely mapped to some error codes in C. #
221
- # Other uses The error model and the `Status` message can be used in a variety
222
- # of environments, either with or without APIs, to provide a consistent
223
- # developer experience across different environments. Example uses of this error
224
- # model include: - Partial errors. If a service needs to return partial errors
225
- # to the client, it may embed the `Status` in the normal response to indicate
226
- # the partial errors. - Workflow errors. A typical workflow has multiple steps.
227
- # Each step may have a `Status` message for error reporting purpose. - Batch
228
- # operations. If a client uses batch request and batch response, the `Status`
229
- # message should be used directly inside batch response, one for each error sub-
230
- # response. - Asynchronous operations. If an API call embeds asynchronous
231
- # operation results in its response, the status of those operations should be
232
- # represented directly using the `Status` message. - Logging. If some API errors
233
- # are stored in logs, the message `Status` could be used directly after any
234
- # stripping needed for security/privacy reasons.
376
+ # message, and error details. The error code should be an enum value of google.
377
+ # rpc.Code, but it may accept additional error codes if needed. The error
378
+ # message should be a developer-facing English message that helps developers *
379
+ # understand* and *resolve* the error. If a localized user-facing error message
380
+ # is needed, put the localized message in the error details or localize it in
381
+ # the client. The optional error details may contain arbitrary information about
382
+ # the error. There is a predefined set of error detail types in the package `
383
+ # google.rpc` which can be used for common error conditions. # Language mapping
384
+ # The `Status` message is the logical representation of the error model, but it
385
+ # is not necessarily the actual wire format. When the `Status` message is
386
+ # exposed in different client libraries and different wire protocols, it can be
387
+ # mapped differently. For example, it will likely be mapped to some exceptions
388
+ # in Java, but more likely mapped to some error codes in C. # Other uses The
389
+ # error model and the `Status` message can be used in a variety of environments,
390
+ # either with or without APIs, to provide a consistent developer experience
391
+ # across different environments. Example uses of this error model include: -
392
+ # Partial errors. If a service needs to return partial errors to the client, it
393
+ # may embed the `Status` in the normal response to indicate the partial errors. -
394
+ # Workflow errors. A typical workflow has multiple steps. Each step may have a `
395
+ # Status` message for error reporting purpose. - Batch operations. If a client
396
+ # uses batch request and batch response, the `Status` message should be used
397
+ # directly inside batch response, one for each error sub-response. -
398
+ # Asynchronous operations. If an API call embeds asynchronous operation results
399
+ # in its response, the status of those operations should be represented directly
400
+ # using the `Status` message. - Logging. If some API errors are stored in logs,
401
+ # the message `Status` could be used directly after any stripping needed for
402
+ # security/privacy reasons.
235
403
  class Status
236
404
  include Google::Apis::Core::Hashable
237
405
 
238
- # The status code, which should be an enum value of [google.rpc.Code][google.rpc.
239
- # Code].
406
+ # The status code, which should be an enum value of google.rpc.Code.
240
407
  # Corresponds to the JSON property `code`
241
408
  # @return [Fixnum]
242
409
  attr_accessor :code
243
410
 
244
411
  # A developer-facing error message, which should be in English. Any user-facing
245
- # error message should be localized and sent in the [google.rpc.Status.details][
246
- # google.rpc.Status.details] field, or localized by the client.
412
+ # error message should be localized and sent in the google.rpc.Status.details
413
+ # field, or localized by the client.
247
414
  # Corresponds to the JSON property `message`
248
415
  # @return [String]
249
416
  attr_accessor :message
@@ -266,8 +433,7 @@ module Google
266
433
  end
267
434
  end
268
435
 
269
- # The response message for [Operations.ListOperations][google.longrunning.
270
- # Operations.ListOperations].
436
+ # The response message for Operations.ListOperations.
271
437
  class ListOperationsResponse
272
438
  include Google::Apis::Core::Hashable
273
439
 
@@ -292,8 +458,7 @@ module Google
292
458
  end
293
459
  end
294
460
 
295
- # The request message for [Operations.CancelOperation][google.longrunning.
296
- # Operations.CancelOperation].
461
+ # The request message for Operations.CancelOperation.
297
462
  class CancelOperationRequest
298
463
  include Google::Apis::Core::Hashable
299
464
 
@@ -324,7 +489,8 @@ module Google
324
489
  # @return [String]
325
490
  attr_accessor :reference_set_id
326
491
 
327
- # A list of URIs pointing at BAM files in Google Cloud Storage.
492
+ # A list of URIs pointing at [BAM files](https://samtools.github.io/hts-specs/
493
+ # SAMv1.pdf) in Google Cloud Storage.
328
494
  # Corresponds to the JSON property `sourceUris`
329
495
  # @return [Array<String>]
330
496
  attr_accessor :source_uris
@@ -352,7 +518,8 @@ module Google
352
518
  class ExportReadGroupSetRequest
353
519
  include Google::Apis::Core::Hashable
354
520
 
355
- # Required. The Google Developers Console project ID that owns this export.
521
+ # Required. The Google Developers Console project ID that owns this export. The
522
+ # caller must have WRITE access to this project.
356
523
  # Corresponds to the JSON property `projectId`
357
524
  # @return [String]
358
525
  attr_accessor :project_id
@@ -406,8 +573,8 @@ module Google
406
573
  # @return [String]
407
574
  attr_accessor :page_token
408
575
 
409
- # Specifies number of results to return in a single page. If unspecified, it
410
- # will default to 256. The maximum value is 1024.
576
+ # The maximum number of results to return in a single page. If unspecified,
577
+ # defaults to 256. The maximum value is 1024.
411
578
  # Corresponds to the JSON property `pageSize`
412
579
  # @return [Fixnum]
413
580
  attr_accessor :page_size
@@ -456,7 +623,9 @@ module Google
456
623
  # of reads produced by a sequencer. A read group set typically models reads
457
624
  # corresponding to one sample, sequenced one way, and aligned one way. * A read
458
625
  # group set belongs to one dataset. * A read group belongs to one read group set.
459
- # * A read belongs to one read group.
626
+ # * A read belongs to one read group. For more genomics resource definitions,
627
+ # see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/
628
+ # fundamentals-of-google-genomics)
460
629
  class ReadGroupSet
461
630
  include Google::Apis::Core::Hashable
462
631
 
@@ -465,12 +634,12 @@ module Google
465
634
  # @return [String]
466
635
  attr_accessor :id
467
636
 
468
- # The dataset ID.
637
+ # The dataset to which this read group set belongs.
469
638
  # Corresponds to the JSON property `datasetId`
470
639
  # @return [String]
471
640
  attr_accessor :dataset_id
472
641
 
473
- # The reference set the reads in this read group set are aligned to.
642
+ # The reference set to which the reads in this read group set are aligned.
474
643
  # Corresponds to the JSON property `referenceSetId`
475
644
  # @return [String]
476
645
  attr_accessor :reference_set_id
@@ -518,13 +687,12 @@ module Google
518
687
  include Google::Apis::Core::Hashable
519
688
 
520
689
  # The server-generated read group ID, unique for all read groups. Note: This is
521
- # different than the `@RG ID` field in the SAM spec. For that value, see the `
522
- # name` field.
690
+ # different than the @RG ID field in the SAM spec. For that value, see name.
523
691
  # Corresponds to the JSON property `id`
524
692
  # @return [String]
525
693
  attr_accessor :id
526
694
 
527
- # The ID of the dataset this read group belongs to.
695
+ # The dataset to which this read group belongs.
528
696
  # Corresponds to the JSON property `datasetId`
529
697
  # @return [String]
530
698
  attr_accessor :dataset_id
@@ -539,9 +707,7 @@ module Google
539
707
  # @return [String]
540
708
  attr_accessor :description
541
709
 
542
- # The sample this read group's data was generated from. Note: This is not an
543
- # actual ID within this repository, but rather an identifier for a sample which
544
- # may be meaningful to some external system.
710
+ # A client-supplied sample identifier for the reads in this read group.
545
711
  # Corresponds to the JSON property `sampleId`
546
712
  # @return [String]
547
713
  attr_accessor :sample_id
@@ -564,8 +730,7 @@ module Google
564
730
  # @return [Array<Google::Apis::GenomicsV1::Program>]
565
731
  attr_accessor :programs
566
732
 
567
- # The reference set the reads in this read group are aligned to. Required if
568
- # there are any read alignments.
733
+ # The reference set the reads in this read group are aligned to.
569
734
  # Corresponds to the JSON property `referenceSetId`
570
735
  # @return [String]
571
736
  attr_accessor :reference_set_id
@@ -599,16 +764,17 @@ module Google
599
764
  class Experiment
600
765
  include Google::Apis::Core::Hashable
601
766
 
602
- # The library used as part of this experiment. Note: This is not an actual ID
603
- # within this repository, but rather an identifier for a library which may be
604
- # meaningful to some external system.
767
+ # A client-supplied library identifier; a library is a collection of DNA
768
+ # fragments which have been prepared for sequencing from a sample. This field is
769
+ # important for quality control as error or bias can be introduced during sample
770
+ # preparation.
605
771
  # Corresponds to the JSON property `libraryId`
606
772
  # @return [String]
607
773
  attr_accessor :library_id
608
774
 
609
- # The platform unit used as part of this experiment e.g. flowcell-barcode.lane
610
- # for Illumina or slide for SOLiD. Corresponds to the @RG PU field in the SAM
611
- # spec.
775
+ # The platform unit used as part of this experiment, for example flowcell-
776
+ # barcode.lane for Illumina or slide for SOLiD. Corresponds to the @RG PU field
777
+ # in the SAM spec.
612
778
  # Corresponds to the JSON property `platformUnit`
613
779
  # @return [String]
614
780
  attr_accessor :platform_unit
@@ -619,7 +785,7 @@ module Google
619
785
  attr_accessor :sequencing_center
620
786
 
621
787
  # The instrument model used as part of this experiment. This maps to sequencing
622
- # technology in BAM.
788
+ # technology in the SAM spec.
623
789
  # Corresponds to the JSON property `instrumentModel`
624
790
  # @return [String]
625
791
  attr_accessor :instrument_model
@@ -652,7 +818,8 @@ module Google
652
818
  # @return [String]
653
819
  attr_accessor :id
654
820
 
655
- # The name of the program.
821
+ # The display name of the program. This is typically the colloquial name of the
822
+ # tool used, for example 'bwa' or 'picard'.
656
823
  # Corresponds to the JSON property `name`
657
824
  # @return [String]
658
825
  attr_accessor :name
@@ -797,8 +964,9 @@ module Google
797
964
  # @return [Array<String>]
798
965
  attr_accessor :read_group_ids
799
966
 
800
- # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to *,
801
- # only unmapped reads are returned.
967
+ # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to `*`,
968
+ # only unmapped reads are returned. If unspecified, all reads (mapped and
969
+ # unmapped) are returned.
802
970
  # Corresponds to the JSON property `referenceName`
803
971
  # @return [String]
804
972
  attr_accessor :reference_name
@@ -822,8 +990,8 @@ module Google
822
990
  # @return [String]
823
991
  attr_accessor :page_token
824
992
 
825
- # Specifies number of results to return in a single page. If unspecified, it
826
- # will default to 256. The maximum value is 2048.
993
+ # The maximum number of results to return in a single page. If unspecified,
994
+ # defaults to 256. The maximum value is 2048.
827
995
  # Corresponds to the JSON property `pageSize`
828
996
  # @return [Fixnum]
829
997
  attr_accessor :page_size
@@ -850,7 +1018,7 @@ module Google
850
1018
 
851
1019
  # The list of matching alignments sorted by mapped genomic coordinate, if any,
852
1020
  # ascending in position within the same reference. Unmapped reads, which have no
853
- # position, are returned last and are further sorted in ascending lexicographic
1021
+ # position, are returned contiguously and are sorted in ascending lexicographic
854
1022
  # order by fragment name.
855
1023
  # Corresponds to the JSON property `alignments`
856
1024
  # @return [Array<Google::Apis::GenomicsV1::Read>]
@@ -874,17 +1042,31 @@ module Google
874
1042
  end
875
1043
  end
876
1044
 
877
- # A read alignment describes a linear alignment of a string of DNA to a [
878
- # reference sequence][google.genomics.v1.Reference], in addition to metadata
879
- # about the fragment (the molecule of DNA sequenced) and the read (the bases
880
- # which were read by the sequencer). A read is equivalent to a line in a SAM
881
- # file. A read belongs to exactly one read group and exactly one [read group set]
882
- # [google.genomics.v1.ReadGroupSet]. ### Generating a reference-aligned sequence
883
- # string When interacting with mapped reads, it's often useful to produce a
884
- # string representing the local alignment of the read to reference. The
885
- # following pseudocode demonstrates one way of doing this: out = "" offset = 0
886
- # for c in read.alignment.cigar ` switch c.operation ` case "ALIGNMENT_MATCH", "
887
- # SEQUENCE_MATCH", "SEQUENCE_MISMATCH": out += read.alignedSequence[offset:
1045
+ # A read alignment describes a linear alignment of a string of DNA to a
1046
+ # reference sequence, in addition to metadata about the fragment (the molecule
1047
+ # of DNA sequenced) and the read (the bases which were read by the sequencer). A
1048
+ # read is equivalent to a line in a SAM file. A read belongs to exactly one read
1049
+ # group and exactly one read group set. For more genomics resource definitions,
1050
+ # see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/
1051
+ # fundamentals-of-google-genomics) ### Reverse-stranded reads Mapped reads (
1052
+ # reads having a non-null `alignment`) can be aligned to either the forward or
1053
+ # the reverse strand of their associated reference. Strandedness of a mapped
1054
+ # read is encoded by `alignment.position.reverseStrand`. If we consider the
1055
+ # reference to be a forward-stranded coordinate space of `[0, reference.length)`
1056
+ # with `0` as the left-most position and `reference.length` as the right-most
1057
+ # position, reads are always aligned left to right. That is, `alignment.position.
1058
+ # position` always refers to the left-most reference coordinate and `alignment.
1059
+ # cigar` describes the alignment of this read to the reference from left to
1060
+ # right. All per-base fields such as `alignedSequence` and `alignedQuality`
1061
+ # share this same left-to-right orientation; this is true of reads which are
1062
+ # aligned to either strand. For reverse-stranded reads, this means that `
1063
+ # alignedSequence` is the reverse complement of the bases that were originally
1064
+ # reported by the sequencing machine. ### Generating a reference-aligned
1065
+ # sequence string When interacting with mapped reads, it's often useful to
1066
+ # produce a string representing the local alignment of the read to reference.
1067
+ # The following pseudocode demonstrates one way of doing this: out = "" offset =
1068
+ # 0 for c in read.alignment.cigar ` switch c.operation ` case "ALIGNMENT_MATCH",
1069
+ # "SEQUENCE_MATCH", "SEQUENCE_MISMATCH": out += read.alignedSequence[offset:
888
1070
  # offset+c.operationLength] offset += c.operationLength break case "CLIP_SOFT", "
889
1071
  # INSERT": offset += c.operationLength break case "PAD": out += repeat("*", c.
890
1072
  # operationLength) break case "DELETE": out += repeat("-", c.operationLength)
@@ -905,14 +1087,15 @@ module Google
905
1087
  # @return [String]
906
1088
  attr_accessor :id
907
1089
 
908
- # The ID of the read group this read belongs to. (Every read must belong to
909
- # exactly one read group.)
1090
+ # The ID of the read group this read belongs to. A read belongs to exactly one
1091
+ # read group. This is a server-generated ID which is distinct from SAM's RG tag (
1092
+ # for that value, see ReadGroup.name).
910
1093
  # Corresponds to the JSON property `readGroupId`
911
1094
  # @return [String]
912
1095
  attr_accessor :read_group_id
913
1096
 
914
- # The ID of the read group set this read belongs to. (Every read must belong to
915
- # exactly one read group set.)
1097
+ # The ID of the read group set this read belongs to. A read belongs to exactly
1098
+ # one read group set.
916
1099
  # Corresponds to the JSON property `readGroupSetId`
917
1100
  # @return [String]
918
1101
  attr_accessor :read_group_set_id
@@ -923,13 +1106,13 @@ module Google
923
1106
  attr_accessor :fragment_name
924
1107
 
925
1108
  # The orientation and the distance between reads from the fragment are
926
- # consistent with the sequencing protocol (SAM flag 0x2)
1109
+ # consistent with the sequencing protocol (SAM flag 0x2).
927
1110
  # Corresponds to the JSON property `properPlacement`
928
1111
  # @return [Boolean]
929
1112
  attr_accessor :proper_placement
930
1113
  alias_method :proper_placement?, :proper_placement
931
1114
 
932
- # The fragment is a PCR or optical duplicate (SAM flag 0x400)
1115
+ # The fragment is a PCR or optical duplicate (SAM flag 0x400).
933
1116
  # Corresponds to the JSON property `duplicateFragment`
934
1117
  # @return [Boolean]
935
1118
  attr_accessor :duplicate_fragment
@@ -951,7 +1134,8 @@ module Google
951
1134
  # @return [Fixnum]
952
1135
  attr_accessor :number_reads
953
1136
 
954
- # SAM flag 0x200
1137
+ # Whether this read did not pass filters, such as platform or vendor quality
1138
+ # controls (SAM flag 0x200).
955
1139
  # Corresponds to the JSON property `failedVendorQualityChecks`
956
1140
  # @return [Boolean]
957
1141
  attr_accessor :failed_vendor_quality_checks
@@ -989,22 +1173,22 @@ module Google
989
1173
  attr_accessor :supplementary_alignment
990
1174
  alias_method :supplementary_alignment?, :supplementary_alignment
991
1175
 
992
- # The bases of the read sequence contained in this alignment record, *without
993
- # CIGAR operations applied*. `alignedSequence` and `alignedQuality` may be
994
- # shorter than the full read sequence and quality. This will occur if the
995
- # alignment is part of a chimeric alignment, or if the read was trimmed. When
996
- # this occurs, the CIGAR for this read will begin/end with a hard clip operator
997
- # that will indicate the length of the excised sequence.
1176
+ # The bases of the read sequence contained in this alignment record, **without
1177
+ # CIGAR operations applied** (equivalent to SEQ in SAM). `alignedSequence` and `
1178
+ # alignedQuality` may be shorter than the full read sequence and quality. This
1179
+ # will occur if the alignment is part of a chimeric alignment, or if the read
1180
+ # was trimmed. When this occurs, the CIGAR for this read will begin/end with a
1181
+ # hard clip operator that will indicate the length of the excised sequence.
998
1182
  # Corresponds to the JSON property `alignedSequence`
999
1183
  # @return [String]
1000
1184
  attr_accessor :aligned_sequence
1001
1185
 
1002
- # The quality of the read sequence contained in this alignment record. `
1003
- # alignedSequence` and `alignedQuality` may be shorter than the full read
1004
- # sequence and quality. This will occur if the alignment is part of a chimeric
1005
- # alignment, or if the read was trimmed. When this occurs, the CIGAR for this
1006
- # read will begin/end with a hard clip operator that will indicate the length of
1007
- # the excised sequence.
1186
+ # The quality of the read sequence contained in this alignment record (
1187
+ # equivalent to QUAL in SAM). `alignedSequence` and `alignedQuality` may be
1188
+ # shorter than the full read sequence and quality. This will occur if the
1189
+ # alignment is part of a chimeric alignment, or if the read was trimmed. When
1190
+ # this occurs, the CIGAR for this read will begin/end with a hard clip operator
1191
+ # that will indicate the length of the excised sequence.
1008
1192
  # Corresponds to the JSON property `alignedQuality`
1009
1193
  # @return [Array<Fixnum>]
1010
1194
  attr_accessor :aligned_quality
@@ -1063,7 +1247,8 @@ module Google
1063
1247
  attr_accessor :position
1064
1248
 
1065
1249
  # The mapping quality of this alignment. Represents how likely the read maps to
1066
- # this position as opposed to other locations.
1250
+ # this position as opposed to other locations. Specifically, this is -10 log10
1251
+ # Pr(mapping position is wrong), rounded to the nearest integer.
1067
1252
  # Corresponds to the JSON property `mappingQuality`
1068
1253
  # @return [Fixnum]
1069
1254
  attr_accessor :mapping_quality
@@ -1155,21 +1340,84 @@ module Google
1155
1340
  end
1156
1341
  end
1157
1342
 
1343
+ # The stream reads request.
1344
+ class StreamReadsRequest
1345
+ include Google::Apis::Core::Hashable
1346
+
1347
+ # The Google Developers Console project ID or number which will be billed for
1348
+ # this access. The caller must have WRITE access to this project. Required.
1349
+ # Corresponds to the JSON property `projectId`
1350
+ # @return [String]
1351
+ attr_accessor :project_id
1352
+
1353
+ # The ID of the read group set from which to stream reads.
1354
+ # Corresponds to the JSON property `readGroupSetId`
1355
+ # @return [String]
1356
+ attr_accessor :read_group_set_id
1357
+
1358
+ # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to *,
1359
+ # only unmapped reads are returned.
1360
+ # Corresponds to the JSON property `referenceName`
1361
+ # @return [String]
1362
+ attr_accessor :reference_name
1363
+
1364
+ # The start position of the range on the reference, 0-based inclusive. If
1365
+ # specified, `referenceName` must also be specified.
1366
+ # Corresponds to the JSON property `start`
1367
+ # @return [String]
1368
+ attr_accessor :start
1369
+
1370
+ # The end position of the range on the reference, 0-based exclusive. If
1371
+ # specified, `referenceName` must also be specified.
1372
+ # Corresponds to the JSON property `end`
1373
+ # @return [String]
1374
+ attr_accessor :end
1375
+
1376
+ def initialize(**args)
1377
+ update!(**args)
1378
+ end
1379
+
1380
+ # Update properties of this object
1381
+ def update!(**args)
1382
+ @project_id = args[:project_id] unless args[:project_id].nil?
1383
+ @read_group_set_id = args[:read_group_set_id] unless args[:read_group_set_id].nil?
1384
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
1385
+ @start = args[:start] unless args[:start].nil?
1386
+ @end = args[:end] unless args[:end].nil?
1387
+ end
1388
+ end
1389
+
1390
+ #
1391
+ class StreamReadsResponse
1392
+ include Google::Apis::Core::Hashable
1393
+
1394
+ #
1395
+ # Corresponds to the JSON property `alignments`
1396
+ # @return [Array<Google::Apis::GenomicsV1::Read>]
1397
+ attr_accessor :alignments
1398
+
1399
+ def initialize(**args)
1400
+ update!(**args)
1401
+ end
1402
+
1403
+ # Update properties of this object
1404
+ def update!(**args)
1405
+ @alignments = args[:alignments] unless args[:alignments].nil?
1406
+ end
1407
+ end
1408
+
1158
1409
  #
1159
1410
  class SearchReferenceSetsRequest
1160
1411
  include Google::Apis::Core::Hashable
1161
1412
 
1162
- # If present, return references for which the `md5checksum` matches. See `
1163
- # ReferenceSet.md5checksum` for details.
1413
+ # If present, return reference sets for which the md5checksum matches exactly.
1164
1414
  # Corresponds to the JSON property `md5checksums`
1165
1415
  # @return [Array<String>]
1166
1416
  attr_accessor :md5checksums
1167
1417
 
1168
- # If present, return references for which the accession matches any of these
1169
- # strings. Best to give a version number, for example `GCF_000001405.26`. If
1170
- # only the main accession number is given then all records with that main
1171
- # accession will be returned, whichever version. Note that different versions
1172
- # will have different sequences.
1418
+ # If present, return reference sets for which a prefix of any of
1419
+ # sourceAccessions match any of these strings. Accession numbers typically have
1420
+ # a main number and a version, for example `NC_000001.11`.
1173
1421
  # Corresponds to the JSON property `accessions`
1174
1422
  # @return [Array<String>]
1175
1423
  attr_accessor :accessions
@@ -1187,7 +1435,8 @@ module Google
1187
1435
  # @return [String]
1188
1436
  attr_accessor :page_token
1189
1437
 
1190
- # Specifies the maximum number of results to return in a single page.
1438
+ # The maximum number of results to return in a single page. If unspecified,
1439
+ # defaults to 1024. The maximum value is 4096.
1191
1440
  # Corresponds to the JSON property `pageSize`
1192
1441
  # @return [Fixnum]
1193
1442
  attr_accessor :page_size
@@ -1237,7 +1486,9 @@ module Google
1237
1486
  # assembly for a species, such as `GRCh38` which is representative of the human
1238
1487
  # genome. A reference set defines a common coordinate space for comparing
1239
1488
  # reference-aligned experimental data. A reference set contains 1 or more
1240
- # references.
1489
+ # references. For more genomics resource definitions, see [Fundamentals of
1490
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
1491
+ # genomics)
1241
1492
  class ReferenceSet
1242
1493
  include Google::Apis::Core::Hashable
1243
1494
 
@@ -1261,11 +1512,11 @@ module Google
1261
1512
  # @return [String]
1262
1513
  attr_accessor :md5checksum
1263
1514
 
1264
- # ID from http://www.ncbi.nlm.nih.gov/taxonomy (e.g. 9606->human) indicating the
1265
- # species which this assembly is intended to model. Note that contained
1266
- # references may specify a different `ncbiTaxonId`, as assemblies may contain
1267
- # reference sequences which do not belong to the modeled species, e.g. EBV in a
1268
- # human reference genome.
1515
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
1516
+ # indicating the species which this reference set is intended to model. Note
1517
+ # that contained references may specify a different `ncbiTaxonId`, as assemblies
1518
+ # may contain reference sequences which do not belong to the modeled species,
1519
+ # for example EBV in a human reference genome.
1269
1520
  # Corresponds to the JSON property `ncbiTaxonId`
1270
1521
  # @return [Fixnum]
1271
1522
  attr_accessor :ncbi_taxon_id
@@ -1312,17 +1563,14 @@ module Google
1312
1563
  class SearchReferencesRequest
1313
1564
  include Google::Apis::Core::Hashable
1314
1565
 
1315
- # If present, return references for which the `md5checksum` matches. See `
1316
- # Reference.md5checksum` for construction details.
1566
+ # If present, return references for which the md5checksum matches exactly.
1317
1567
  # Corresponds to the JSON property `md5checksums`
1318
1568
  # @return [Array<String>]
1319
1569
  attr_accessor :md5checksums
1320
1570
 
1321
- # If present, return references for which the accession matches this string.
1322
- # Best to give a version number, for example `GCF_000001405.26`. If only the
1323
- # main accession number is given then all records with that main accession will
1324
- # be returned, whichever version. Note that different versions will have
1325
- # different sequences.
1571
+ # If present, return references for which a prefix of any of sourceAccessions
1572
+ # match any of these strings. Accession numbers typically have a main number and
1573
+ # a version, for example `GCF_000001405.26`.
1326
1574
  # Corresponds to the JSON property `accessions`
1327
1575
  # @return [Array<String>]
1328
1576
  attr_accessor :accessions
@@ -1339,7 +1587,8 @@ module Google
1339
1587
  # @return [String]
1340
1588
  attr_accessor :page_token
1341
1589
 
1342
- # Specifies the maximum number of results to return in a single page.
1590
+ # The maximum number of results to return in a single page. If unspecified,
1591
+ # defaults to 1024. The maximum value is 4096.
1343
1592
  # Corresponds to the JSON property `pageSize`
1344
1593
  # @return [Fixnum]
1345
1594
  attr_accessor :page_size
@@ -1388,7 +1637,9 @@ module Google
1388
1637
  # A reference is a canonical assembled DNA sequence, intended to act as a
1389
1638
  # reference coordinate space for other genomic annotations. A single reference
1390
1639
  # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
1391
- # reference belongs to one or more reference sets.
1640
+ # reference belongs to one or more reference sets. For more genomics resource
1641
+ # definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/
1642
+ # genomics/fundamentals-of-google-genomics)
1392
1643
  class Reference
1393
1644
  include Google::Apis::Core::Hashable
1394
1645
 
@@ -1414,8 +1665,8 @@ module Google
1414
1665
  # @return [String]
1415
1666
  attr_accessor :name
1416
1667
 
1417
- # The URI from which the sequence was obtained. Specifies a FASTA format file/
1418
- # string with one name, sequence pair.
1668
+ # The URI from which the sequence was obtained. Typically specifies a FASTA
1669
+ # format file.
1419
1670
  # Corresponds to the JSON property `sourceUri`
1420
1671
  # @return [String]
1421
1672
  attr_accessor :source_uri
@@ -1426,8 +1677,7 @@ module Google
1426
1677
  # @return [Array<String>]
1427
1678
  attr_accessor :source_accessions
1428
1679
 
1429
- # ID from http://www.ncbi.nlm.nih.gov/taxonomy (e.g. 9606->human) if not
1430
- # specified by the containing reference set.
1680
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
1431
1681
  # Corresponds to the JSON property `ncbiTaxonId`
1432
1682
  # @return [Fixnum]
1433
1683
  attr_accessor :ncbi_taxon_id
@@ -1530,7 +1780,9 @@ module Google
1530
1780
  end
1531
1781
 
1532
1782
  # A variant set is a collection of call sets and variants. It contains summary
1533
- # statistics of those contents. A variant set belongs to a dataset.
1783
+ # statistics of those contents. A variant set belongs to a dataset. For more
1784
+ # genomics resource definitions, see [Fundamentals of Google Genomics](https://
1785
+ # cloud.google.com/genomics/fundamentals-of-google-genomics)
1534
1786
  class VariantSet
1535
1787
  include Google::Apis::Core::Hashable
1536
1788
 
@@ -1544,6 +1796,18 @@ module Google
1544
1796
  # @return [String]
1545
1797
  attr_accessor :id
1546
1798
 
1799
+ # The reference set to which the variant set is mapped. The reference set
1800
+ # describes the alignment provenance of the variant set, while the `
1801
+ # referenceBounds` describe the shape of the actual variant data. The reference
1802
+ # set's reference names are a superset of those found in the `referenceBounds`.
1803
+ # For example, given a variant set that is mapped to the GRCh38 reference set
1804
+ # and contains a single variant on reference 'X', `referenceBounds` would
1805
+ # contain only an entry for 'X', while the associated reference set enumerates
1806
+ # all possible references: '1', '2', 'X', 'Y', 'MT', etc.
1807
+ # Corresponds to the JSON property `referenceSetId`
1808
+ # @return [String]
1809
+ attr_accessor :reference_set_id
1810
+
1547
1811
  # A list of all references used by the variants in a variant set with associated
1548
1812
  # coordinate upper bounds for each one.
1549
1813
  # Corresponds to the JSON property `referenceBounds`
@@ -1563,6 +1827,7 @@ module Google
1563
1827
  def update!(**args)
1564
1828
  @dataset_id = args[:dataset_id] unless args[:dataset_id].nil?
1565
1829
  @id = args[:id] unless args[:id].nil?
1830
+ @reference_set_id = args[:reference_set_id] unless args[:reference_set_id].nil?
1566
1831
  @reference_bounds = args[:reference_bounds] unless args[:reference_bounds].nil?
1567
1832
  @metadata = args[:metadata] unless args[:metadata].nil?
1568
1833
  end
@@ -1573,7 +1838,7 @@ module Google
1573
1838
  class ReferenceBound
1574
1839
  include Google::Apis::Core::Hashable
1575
1840
 
1576
- # The reference the bound is associate with.
1841
+ # The name of the reference associated with this ReferenceBound.
1577
1842
  # Corresponds to the JSON property `referenceName`
1578
1843
  # @return [String]
1579
1844
  attr_accessor :reference_name
@@ -1626,7 +1891,7 @@ module Google
1626
1891
  # The number of values that can be included in a field described by this
1627
1892
  # metadata.
1628
1893
  # Corresponds to the JSON property `number`
1629
- # @return [Fixnum]
1894
+ # @return [String]
1630
1895
  attr_accessor :number
1631
1896
 
1632
1897
  # A textual description of this metadata.
@@ -1721,7 +1986,8 @@ module Google
1721
1986
  # @return [String]
1722
1987
  attr_accessor :page_token
1723
1988
 
1724
- # The maximum number of variant sets to return in a request.
1989
+ # The maximum number of results to return in a single page. If unspecified,
1990
+ # defaults to 1024.
1725
1991
  # Corresponds to the JSON property `pageSize`
1726
1992
  # @return [Fixnum]
1727
1993
  attr_accessor :page_size
@@ -1813,14 +2079,16 @@ module Google
1813
2079
  # @return [String]
1814
2080
  attr_accessor :page_token
1815
2081
 
1816
- # The maximum number of variants to return. If unspecified, defaults to 5000.
2082
+ # The maximum number of variants to return in a single page. If unspecified,
2083
+ # defaults to 5000. The maximum value is 10000.
1817
2084
  # Corresponds to the JSON property `pageSize`
1818
2085
  # @return [Fixnum]
1819
2086
  attr_accessor :page_size
1820
2087
 
1821
- # The maximum number of calls to return. However, at least one variant will
1822
- # always be returned, even if it has more calls than this limit. If unspecified,
1823
- # defaults to 5000.
2088
+ # The maximum number of calls to return in a single page. Note that this limit
2089
+ # may be exceeded; at least one variant is always returned per page, even if it
2090
+ # has more calls than this limit. If unspecified, defaults to 5000. The maximum
2091
+ # value is 10000.
1824
2092
  # Corresponds to the JSON property `maxCalls`
1825
2093
  # @return [Fixnum]
1826
2094
  attr_accessor :max_calls
@@ -1872,11 +2140,12 @@ module Google
1872
2140
 
1873
2141
  # A variant represents a change in DNA sequence relative to a reference sequence.
1874
2142
  # For example, a variant could represent a SNP or an insertion. Variants belong
1875
- # to a variant set. Each of the calls on a variant represent a determination of
1876
- # genotype with respect to that variant. For example, a call might assign
1877
- # probability of 0.32 to the occurrence of a SNP named rs1234 in a sample named
1878
- # NA12345. A call belongs to a call set, which contains related calls typically
1879
- # from one sample.
2143
+ # to a variant set. For more genomics resource definitions, see [Fundamentals of
2144
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
2145
+ # genomics) Each of the calls on a variant represent a determination of genotype
2146
+ # with respect to that variant. For example, a call might assign probability of
2147
+ # 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
2148
+ # belongs to a call set, which contains related calls typically from one sample.
1880
2149
  class Variant
1881
2150
  include Google::Apis::Core::Hashable
1882
2151
 
@@ -2043,31 +2312,6 @@ module Google
2043
2312
  end
2044
2313
  end
2045
2314
 
2046
- #
2047
- class MergeVariantsRequest
2048
- include Google::Apis::Core::Hashable
2049
-
2050
- # The destination variant set.
2051
- # Corresponds to the JSON property `variantSetId`
2052
- # @return [String]
2053
- attr_accessor :variant_set_id
2054
-
2055
- # The variants to be merged with existing variants.
2056
- # Corresponds to the JSON property `variants`
2057
- # @return [Array<Google::Apis::GenomicsV1::Variant>]
2058
- attr_accessor :variants
2059
-
2060
- def initialize(**args)
2061
- update!(**args)
2062
- end
2063
-
2064
- # Update properties of this object
2065
- def update!(**args)
2066
- @variant_set_id = args[:variant_set_id] unless args[:variant_set_id].nil?
2067
- @variants = args[:variants] unless args[:variants].nil?
2068
- end
2069
- end
2070
-
2071
2315
  # The call set search request.
2072
2316
  class SearchCallSetsRequest
2073
2317
  include Google::Apis::Core::Hashable
@@ -2090,7 +2334,8 @@ module Google
2090
2334
  # @return [String]
2091
2335
  attr_accessor :page_token
2092
2336
 
2093
- # The maximum number of call sets to return. If unspecified, defaults to 1000.
2337
+ # The maximum number of results to return in a single page. If unspecified,
2338
+ # defaults to 1024.
2094
2339
  # Corresponds to the JSON property `pageSize`
2095
2340
  # @return [Fixnum]
2096
2341
  attr_accessor :page_size
@@ -2136,7 +2381,9 @@ module Google
2136
2381
  end
2137
2382
 
2138
2383
  # A call set is a collection of variant calls, typically for one sample. It
2139
- # belongs to a variant set.
2384
+ # belongs to a variant set. For more genomics resource definitions, see [
2385
+ # Fundamentals of Google Genomics](https://cloud.google.com/genomics/
2386
+ # fundamentals-of-google-genomics)
2140
2387
  class CallSet
2141
2388
  include Google::Apis::Core::Hashable
2142
2389
 
@@ -2189,6 +2436,78 @@ module Google
2189
2436
  end
2190
2437
  end
2191
2438
 
2439
+ # The stream variants request.
2440
+ class StreamVariantsRequest
2441
+ include Google::Apis::Core::Hashable
2442
+
2443
+ # The Google Developers Console project ID or number which will be billed for
2444
+ # this access. The caller must have WRITE access to this project. Required.
2445
+ # Corresponds to the JSON property `projectId`
2446
+ # @return [String]
2447
+ attr_accessor :project_id
2448
+
2449
+ # The variant set ID from which to stream variants.
2450
+ # Corresponds to the JSON property `variantSetId`
2451
+ # @return [String]
2452
+ attr_accessor :variant_set_id
2453
+
2454
+ # Only return variant calls which belong to call sets with these IDs. Leaving
2455
+ # this blank returns all variant calls.
2456
+ # Corresponds to the JSON property `callSetIds`
2457
+ # @return [Array<String>]
2458
+ attr_accessor :call_set_ids
2459
+
2460
+ # Required. Only return variants in this reference sequence.
2461
+ # Corresponds to the JSON property `referenceName`
2462
+ # @return [String]
2463
+ attr_accessor :reference_name
2464
+
2465
+ # The beginning of the window (0-based, inclusive) for which overlapping
2466
+ # variants should be returned.
2467
+ # Corresponds to the JSON property `start`
2468
+ # @return [String]
2469
+ attr_accessor :start
2470
+
2471
+ # The end of the window (0-based, exclusive) for which overlapping variants
2472
+ # should be returned.
2473
+ # Corresponds to the JSON property `end`
2474
+ # @return [String]
2475
+ attr_accessor :end
2476
+
2477
+ def initialize(**args)
2478
+ update!(**args)
2479
+ end
2480
+
2481
+ # Update properties of this object
2482
+ def update!(**args)
2483
+ @project_id = args[:project_id] unless args[:project_id].nil?
2484
+ @variant_set_id = args[:variant_set_id] unless args[:variant_set_id].nil?
2485
+ @call_set_ids = args[:call_set_ids] unless args[:call_set_ids].nil?
2486
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
2487
+ @start = args[:start] unless args[:start].nil?
2488
+ @end = args[:end] unless args[:end].nil?
2489
+ end
2490
+ end
2491
+
2492
+ #
2493
+ class StreamVariantsResponse
2494
+ include Google::Apis::Core::Hashable
2495
+
2496
+ #
2497
+ # Corresponds to the JSON property `variants`
2498
+ # @return [Array<Google::Apis::GenomicsV1::Variant>]
2499
+ attr_accessor :variants
2500
+
2501
+ def initialize(**args)
2502
+ update!(**args)
2503
+ end
2504
+
2505
+ # Update properties of this object
2506
+ def update!(**args)
2507
+ @variants = args[:variants] unless args[:variants].nil?
2508
+ end
2509
+ end
2510
+
2192
2511
  # The read group set import response.
2193
2512
  class ImportReadGroupSetsResponse
2194
2513
  include Google::Apis::Core::Hashable
@@ -2212,7 +2531,7 @@ module Google
2212
2531
  class ImportVariantsResponse
2213
2532
  include Google::Apis::Core::Hashable
2214
2533
 
2215
- # IDs of the call sets that were created.
2534
+ # IDs of the call sets created during the import.
2216
2535
  # Corresponds to the JSON property `callSetIds`
2217
2536
  # @return [Array<String>]
2218
2537
  attr_accessor :call_set_ids
@@ -2227,7 +2546,7 @@ module Google
2227
2546
  end
2228
2547
  end
2229
2548
 
2230
- # Metadata describing an [Operation][google.longrunning.Operation].
2549
+ # Metadata describing an Operation.
2231
2550
  class OperationMetadata
2232
2551
  include Google::Apis::Core::Hashable
2233
2552
 
@@ -2267,7 +2586,7 @@ module Google
2267
2586
  end
2268
2587
  end
2269
2588
 
2270
- # An event that occurred during an [Operation][google.longrunning.Operation].
2589
+ # An event that occurred during an Operation.
2271
2590
  class OperationEvent
2272
2591
  include Google::Apis::Core::Hashable
2273
2592