google-api-client 0.28.4 → 0.29.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (750) hide show
  1. checksums.yaml +4 -4
  2. data/.kokoro/build.bat +9 -6
  3. data/.kokoro/build.sh +2 -34
  4. data/.kokoro/continuous/common.cfg +6 -1
  5. data/.kokoro/continuous/linux.cfg +1 -1
  6. data/.kokoro/continuous/windows.cfg +17 -1
  7. data/.kokoro/osx.sh +2 -33
  8. data/.kokoro/presubmit/common.cfg +6 -1
  9. data/.kokoro/presubmit/linux.cfg +1 -1
  10. data/.kokoro/presubmit/windows.cfg +17 -1
  11. data/.kokoro/trampoline.bat +10 -0
  12. data/.kokoro/trampoline.sh +3 -23
  13. data/CHANGELOG.md +460 -0
  14. data/README.md +1 -1
  15. data/Rakefile +31 -0
  16. data/bin/generate-api +4 -2
  17. data/generated/google/apis/abusiveexperiencereport_v1/service.rb +2 -2
  18. data/generated/google/apis/acceleratedmobilepageurl_v1/service.rb +1 -1
  19. data/generated/google/apis/accessapproval_v1beta1/classes.rb +333 -0
  20. data/generated/google/apis/accessapproval_v1beta1/representations.rb +174 -0
  21. data/generated/google/apis/accessapproval_v1beta1/service.rb +728 -0
  22. data/generated/google/apis/accessapproval_v1beta1.rb +34 -0
  23. data/generated/google/apis/accesscontextmanager_v1/classes.rb +755 -0
  24. data/generated/google/apis/accesscontextmanager_v1/representations.rb +282 -0
  25. data/generated/google/apis/accesscontextmanager_v1/service.rb +788 -0
  26. data/generated/google/apis/accesscontextmanager_v1.rb +34 -0
  27. data/generated/google/apis/accesscontextmanager_v1beta/classes.rb +47 -31
  28. data/generated/google/apis/accesscontextmanager_v1beta/representations.rb +4 -0
  29. data/generated/google/apis/accesscontextmanager_v1beta/service.rb +16 -16
  30. data/generated/google/apis/accesscontextmanager_v1beta.rb +1 -1
  31. data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +95 -200
  32. data/generated/google/apis/adexchangebuyer2_v2beta1/representations.rb +0 -32
  33. data/generated/google/apis/adexchangebuyer2_v2beta1/service.rb +64 -104
  34. data/generated/google/apis/adexchangebuyer2_v2beta1.rb +1 -1
  35. data/generated/google/apis/adexchangebuyer_v1_2/service.rb +7 -7
  36. data/generated/google/apis/adexchangebuyer_v1_3/service.rb +21 -21
  37. data/generated/google/apis/adexchangebuyer_v1_4/service.rb +38 -38
  38. data/generated/google/apis/adexperiencereport_v1/service.rb +2 -2
  39. data/generated/google/apis/admin_datatransfer_v1/service.rb +5 -5
  40. data/generated/google/apis/admin_directory_v1/classes.rb +5 -50
  41. data/generated/google/apis/admin_directory_v1/representations.rb +0 -2
  42. data/generated/google/apis/admin_directory_v1/service.rb +113 -113
  43. data/generated/google/apis/admin_directory_v1.rb +1 -1
  44. data/generated/google/apis/admin_reports_v1/service.rb +6 -6
  45. data/generated/google/apis/admin_reports_v1.rb +1 -1
  46. data/generated/google/apis/adsense_v1_4/service.rb +39 -39
  47. data/generated/google/apis/adsensehost_v4_1/service.rb +26 -26
  48. data/generated/google/apis/alertcenter_v1beta1/classes.rb +101 -2
  49. data/generated/google/apis/alertcenter_v1beta1/representations.rb +25 -0
  50. data/generated/google/apis/alertcenter_v1beta1/service.rb +17 -16
  51. data/generated/google/apis/alertcenter_v1beta1.rb +1 -1
  52. data/generated/google/apis/analytics_v2_4/service.rb +6 -6
  53. data/generated/google/apis/analytics_v3/service.rb +88 -88
  54. data/generated/google/apis/analyticsreporting_v4/classes.rb +638 -0
  55. data/generated/google/apis/analyticsreporting_v4/representations.rb +248 -0
  56. data/generated/google/apis/analyticsreporting_v4/service.rb +31 -1
  57. data/generated/google/apis/analyticsreporting_v4.rb +1 -1
  58. data/generated/google/apis/androiddeviceprovisioning_v1/classes.rb +51 -11
  59. data/generated/google/apis/androiddeviceprovisioning_v1/representations.rb +6 -0
  60. data/generated/google/apis/androiddeviceprovisioning_v1/service.rb +26 -26
  61. data/generated/google/apis/androiddeviceprovisioning_v1.rb +1 -1
  62. data/generated/google/apis/androidenterprise_v1/classes.rb +26 -30
  63. data/generated/google/apis/androidenterprise_v1/representations.rb +2 -14
  64. data/generated/google/apis/androidenterprise_v1/service.rb +85 -121
  65. data/generated/google/apis/androidenterprise_v1.rb +1 -1
  66. data/generated/google/apis/androidmanagement_v1/classes.rb +358 -4
  67. data/generated/google/apis/androidmanagement_v1/representations.rb +163 -0
  68. data/generated/google/apis/androidmanagement_v1/service.rb +191 -21
  69. data/generated/google/apis/androidmanagement_v1.rb +1 -1
  70. data/generated/google/apis/androidpublisher_v1/service.rb +2 -2
  71. data/generated/google/apis/androidpublisher_v1_1/service.rb +3 -3
  72. data/generated/google/apis/androidpublisher_v2/service.rb +64 -70
  73. data/generated/google/apis/androidpublisher_v2.rb +1 -1
  74. data/generated/google/apis/androidpublisher_v3/classes.rb +113 -0
  75. data/generated/google/apis/androidpublisher_v3/representations.rb +58 -0
  76. data/generated/google/apis/androidpublisher_v3/service.rb +234 -64
  77. data/generated/google/apis/androidpublisher_v3.rb +1 -1
  78. data/generated/google/apis/appengine_v1/classes.rb +45 -100
  79. data/generated/google/apis/appengine_v1/representations.rb +17 -35
  80. data/generated/google/apis/appengine_v1/service.rb +45 -39
  81. data/generated/google/apis/appengine_v1.rb +1 -1
  82. data/generated/google/apis/appengine_v1alpha/classes.rb +2 -99
  83. data/generated/google/apis/appengine_v1alpha/representations.rb +0 -35
  84. data/generated/google/apis/appengine_v1alpha/service.rb +15 -15
  85. data/generated/google/apis/appengine_v1alpha.rb +1 -1
  86. data/generated/google/apis/appengine_v1beta/classes.rb +7 -102
  87. data/generated/google/apis/appengine_v1beta/representations.rb +0 -35
  88. data/generated/google/apis/appengine_v1beta/service.rb +45 -39
  89. data/generated/google/apis/appengine_v1beta.rb +1 -1
  90. data/generated/google/apis/appengine_v1beta4/service.rb +20 -20
  91. data/generated/google/apis/appengine_v1beta5/service.rb +20 -20
  92. data/generated/google/apis/appsactivity_v1/service.rb +5 -4
  93. data/generated/google/apis/appsactivity_v1.rb +1 -1
  94. data/generated/google/apis/appsmarket_v2/service.rb +3 -3
  95. data/generated/google/apis/appstate_v1/service.rb +5 -5
  96. data/generated/google/apis/bigquery_v2/classes.rb +1121 -114
  97. data/generated/google/apis/bigquery_v2/representations.rb +414 -26
  98. data/generated/google/apis/bigquery_v2/service.rb +184 -22
  99. data/generated/google/apis/bigquery_v2.rb +1 -1
  100. data/generated/google/apis/bigquerydatatransfer_v1/classes.rb +88 -10
  101. data/generated/google/apis/bigquerydatatransfer_v1/representations.rb +43 -0
  102. data/generated/google/apis/bigquerydatatransfer_v1/service.rb +142 -34
  103. data/generated/google/apis/bigquerydatatransfer_v1.rb +3 -3
  104. data/generated/google/apis/bigtableadmin_v1/service.rb +3 -3
  105. data/generated/google/apis/bigtableadmin_v1.rb +2 -2
  106. data/generated/google/apis/bigtableadmin_v2/classes.rb +14 -14
  107. data/generated/google/apis/bigtableadmin_v2/service.rb +142 -33
  108. data/generated/google/apis/bigtableadmin_v2.rb +2 -2
  109. data/generated/google/apis/binaryauthorization_v1beta1/classes.rb +66 -6
  110. data/generated/google/apis/binaryauthorization_v1beta1/representations.rb +17 -0
  111. data/generated/google/apis/binaryauthorization_v1beta1/service.rb +17 -13
  112. data/generated/google/apis/binaryauthorization_v1beta1.rb +1 -1
  113. data/generated/google/apis/blogger_v2/service.rb +9 -9
  114. data/generated/google/apis/blogger_v3/service.rb +33 -33
  115. data/generated/google/apis/books_v1/service.rb +51 -51
  116. data/generated/google/apis/calendar_v3/classes.rb +1 -1
  117. data/generated/google/apis/calendar_v3/service.rb +47 -47
  118. data/generated/google/apis/calendar_v3.rb +1 -1
  119. data/generated/google/apis/chat_v1/service.rb +8 -8
  120. data/generated/google/apis/civicinfo_v2/service.rb +5 -5
  121. data/generated/google/apis/classroom_v1/classes.rb +77 -0
  122. data/generated/google/apis/classroom_v1/representations.rb +32 -0
  123. data/generated/google/apis/classroom_v1/service.rb +276 -51
  124. data/generated/google/apis/classroom_v1.rb +7 -1
  125. data/generated/google/apis/cloudasset_v1/classes.rb +818 -0
  126. data/generated/google/apis/cloudasset_v1/representations.rb +264 -0
  127. data/generated/google/apis/cloudasset_v1/service.rb +191 -0
  128. data/generated/google/apis/cloudasset_v1.rb +34 -0
  129. data/generated/google/apis/cloudasset_v1beta1/classes.rb +33 -18
  130. data/generated/google/apis/cloudasset_v1beta1/representations.rb +1 -0
  131. data/generated/google/apis/cloudasset_v1beta1/service.rb +13 -13
  132. data/generated/google/apis/cloudasset_v1beta1.rb +2 -2
  133. data/generated/google/apis/cloudbilling_v1/classes.rb +1 -1
  134. data/generated/google/apis/cloudbilling_v1/service.rb +14 -14
  135. data/generated/google/apis/cloudbilling_v1.rb +1 -1
  136. data/generated/google/apis/cloudbuild_v1/classes.rb +162 -11
  137. data/generated/google/apis/cloudbuild_v1/representations.rb +67 -0
  138. data/generated/google/apis/cloudbuild_v1/service.rb +21 -15
  139. data/generated/google/apis/cloudbuild_v1.rb +1 -1
  140. data/generated/google/apis/cloudbuild_v1alpha1/classes.rb +7 -1
  141. data/generated/google/apis/cloudbuild_v1alpha1/representations.rb +2 -0
  142. data/generated/google/apis/cloudbuild_v1alpha1/service.rb +6 -6
  143. data/generated/google/apis/cloudbuild_v1alpha1.rb +1 -1
  144. data/generated/google/apis/clouddebugger_v2/service.rb +8 -8
  145. data/generated/google/apis/clouderrorreporting_v1beta1/classes.rb +19 -16
  146. data/generated/google/apis/clouderrorreporting_v1beta1/service.rb +12 -11
  147. data/generated/google/apis/clouderrorreporting_v1beta1.rb +1 -1
  148. data/generated/google/apis/cloudfunctions_v1/classes.rb +21 -17
  149. data/generated/google/apis/cloudfunctions_v1/service.rb +22 -16
  150. data/generated/google/apis/cloudfunctions_v1.rb +1 -1
  151. data/generated/google/apis/cloudfunctions_v1beta2/classes.rb +20 -16
  152. data/generated/google/apis/cloudfunctions_v1beta2/service.rb +17 -11
  153. data/generated/google/apis/cloudfunctions_v1beta2.rb +1 -1
  154. data/generated/google/apis/cloudidentity_v1/classes.rb +14 -14
  155. data/generated/google/apis/cloudidentity_v1/service.rb +18 -27
  156. data/generated/google/apis/cloudidentity_v1.rb +7 -1
  157. data/generated/google/apis/cloudidentity_v1beta1/classes.rb +11 -11
  158. data/generated/google/apis/cloudidentity_v1beta1/service.rb +15 -21
  159. data/generated/google/apis/cloudidentity_v1beta1.rb +7 -1
  160. data/generated/google/apis/cloudiot_v1/classes.rb +11 -11
  161. data/generated/google/apis/cloudiot_v1/service.rb +23 -330
  162. data/generated/google/apis/cloudiot_v1.rb +1 -1
  163. data/generated/google/apis/cloudkms_v1/classes.rb +7 -3
  164. data/generated/google/apis/cloudkms_v1/service.rb +30 -30
  165. data/generated/google/apis/cloudkms_v1.rb +1 -1
  166. data/generated/google/apis/cloudprivatecatalog_v1beta1/classes.rb +358 -0
  167. data/generated/google/apis/cloudprivatecatalog_v1beta1/representations.rb +123 -0
  168. data/generated/google/apis/cloudprivatecatalog_v1beta1/service.rb +486 -0
  169. data/generated/google/apis/cloudprivatecatalog_v1beta1.rb +35 -0
  170. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/classes.rb +1212 -0
  171. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/representations.rb +399 -0
  172. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/service.rb +1073 -0
  173. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1.rb +35 -0
  174. data/generated/google/apis/cloudprofiler_v2/service.rb +3 -3
  175. data/generated/google/apis/cloudresourcemanager_v1/classes.rb +24 -22
  176. data/generated/google/apis/cloudresourcemanager_v1/service.rb +68 -59
  177. data/generated/google/apis/cloudresourcemanager_v1.rb +1 -1
  178. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +3 -3
  179. data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +53 -42
  180. data/generated/google/apis/cloudresourcemanager_v1beta1.rb +1 -1
  181. data/generated/google/apis/cloudresourcemanager_v2/classes.rb +15 -16
  182. data/generated/google/apis/cloudresourcemanager_v2/service.rb +13 -13
  183. data/generated/google/apis/cloudresourcemanager_v2.rb +1 -1
  184. data/generated/google/apis/cloudresourcemanager_v2beta1/classes.rb +15 -16
  185. data/generated/google/apis/cloudresourcemanager_v2beta1/service.rb +13 -13
  186. data/generated/google/apis/cloudresourcemanager_v2beta1.rb +1 -1
  187. data/generated/google/apis/cloudscheduler_v1/classes.rb +994 -0
  188. data/generated/google/apis/cloudscheduler_v1/representations.rb +297 -0
  189. data/generated/google/apis/cloudscheduler_v1/service.rb +448 -0
  190. data/generated/google/apis/cloudscheduler_v1.rb +34 -0
  191. data/generated/google/apis/cloudscheduler_v1beta1/classes.rb +160 -44
  192. data/generated/google/apis/cloudscheduler_v1beta1/representations.rb +33 -0
  193. data/generated/google/apis/cloudscheduler_v1beta1/service.rb +15 -12
  194. data/generated/google/apis/cloudscheduler_v1beta1.rb +1 -1
  195. data/generated/google/apis/cloudsearch_v1/classes.rb +245 -59
  196. data/generated/google/apis/cloudsearch_v1/representations.rb +91 -0
  197. data/generated/google/apis/cloudsearch_v1/service.rb +86 -80
  198. data/generated/google/apis/cloudsearch_v1.rb +1 -1
  199. data/generated/google/apis/cloudshell_v1/classes.rb +11 -11
  200. data/generated/google/apis/cloudshell_v1/service.rb +4 -4
  201. data/generated/google/apis/cloudshell_v1.rb +1 -1
  202. data/generated/google/apis/cloudshell_v1alpha1/classes.rb +24 -11
  203. data/generated/google/apis/cloudshell_v1alpha1/representations.rb +2 -0
  204. data/generated/google/apis/cloudshell_v1alpha1/service.rb +11 -10
  205. data/generated/google/apis/cloudshell_v1alpha1.rb +1 -1
  206. data/generated/google/apis/cloudtasks_v2/classes.rb +1436 -0
  207. data/generated/google/apis/cloudtasks_v2/representations.rb +408 -0
  208. data/generated/google/apis/cloudtasks_v2/service.rb +856 -0
  209. data/generated/google/apis/{partners_v2.rb → cloudtasks_v2.rb} +11 -9
  210. data/generated/google/apis/cloudtasks_v2beta2/classes.rb +141 -102
  211. data/generated/google/apis/cloudtasks_v2beta2/service.rb +44 -43
  212. data/generated/google/apis/cloudtasks_v2beta2.rb +1 -1
  213. data/generated/google/apis/cloudtasks_v2beta3/classes.rb +388 -108
  214. data/generated/google/apis/cloudtasks_v2beta3/representations.rb +65 -0
  215. data/generated/google/apis/cloudtasks_v2beta3/service.rb +40 -39
  216. data/generated/google/apis/cloudtasks_v2beta3.rb +1 -1
  217. data/generated/google/apis/cloudtrace_v1/service.rb +3 -3
  218. data/generated/google/apis/cloudtrace_v2/classes.rb +10 -10
  219. data/generated/google/apis/cloudtrace_v2/service.rb +2 -2
  220. data/generated/google/apis/cloudtrace_v2.rb +1 -1
  221. data/generated/google/apis/commentanalyzer_v1alpha1/classes.rb +484 -0
  222. data/generated/google/apis/commentanalyzer_v1alpha1/representations.rb +210 -0
  223. data/generated/google/apis/commentanalyzer_v1alpha1/service.rb +124 -0
  224. data/generated/google/apis/commentanalyzer_v1alpha1.rb +39 -0
  225. data/generated/google/apis/composer_v1/classes.rb +21 -15
  226. data/generated/google/apis/composer_v1/service.rb +9 -9
  227. data/generated/google/apis/composer_v1.rb +1 -1
  228. data/generated/google/apis/composer_v1beta1/classes.rb +175 -36
  229. data/generated/google/apis/composer_v1beta1/representations.rb +50 -0
  230. data/generated/google/apis/composer_v1beta1/service.rb +9 -9
  231. data/generated/google/apis/composer_v1beta1.rb +1 -1
  232. data/generated/google/apis/compute_alpha/classes.rb +10112 -7289
  233. data/generated/google/apis/compute_alpha/representations.rb +1337 -219
  234. data/generated/google/apis/compute_alpha/service.rb +4259 -2728
  235. data/generated/google/apis/compute_alpha.rb +1 -1
  236. data/generated/google/apis/compute_beta/classes.rb +4254 -2781
  237. data/generated/google/apis/compute_beta/representations.rb +853 -283
  238. data/generated/google/apis/compute_beta/service.rb +7077 -5955
  239. data/generated/google/apis/compute_beta.rb +1 -1
  240. data/generated/google/apis/compute_v1/classes.rb +1259 -93
  241. data/generated/google/apis/compute_v1/representations.rb +450 -1
  242. data/generated/google/apis/compute_v1/service.rb +1085 -400
  243. data/generated/google/apis/compute_v1.rb +1 -1
  244. data/generated/google/apis/container_v1/classes.rb +201 -22
  245. data/generated/google/apis/container_v1/representations.rb +69 -0
  246. data/generated/google/apis/container_v1/service.rb +151 -102
  247. data/generated/google/apis/container_v1.rb +1 -1
  248. data/generated/google/apis/container_v1beta1/classes.rb +215 -25
  249. data/generated/google/apis/container_v1beta1/representations.rb +86 -0
  250. data/generated/google/apis/container_v1beta1/service.rb +106 -106
  251. data/generated/google/apis/container_v1beta1.rb +1 -1
  252. data/generated/google/apis/containeranalysis_v1alpha1/classes.rb +26 -18
  253. data/generated/google/apis/containeranalysis_v1alpha1/representations.rb +1 -0
  254. data/generated/google/apis/containeranalysis_v1alpha1/service.rb +33 -33
  255. data/generated/google/apis/containeranalysis_v1alpha1.rb +1 -1
  256. data/generated/google/apis/containeranalysis_v1beta1/classes.rb +226 -12
  257. data/generated/google/apis/containeranalysis_v1beta1/representations.rb +58 -0
  258. data/generated/google/apis/containeranalysis_v1beta1/service.rb +24 -24
  259. data/generated/google/apis/containeranalysis_v1beta1.rb +1 -1
  260. data/generated/google/apis/content_v2/classes.rb +218 -101
  261. data/generated/google/apis/content_v2/representations.rb +49 -0
  262. data/generated/google/apis/content_v2/service.rb +189 -152
  263. data/generated/google/apis/content_v2.rb +1 -1
  264. data/generated/google/apis/content_v2_1/classes.rb +387 -216
  265. data/generated/google/apis/content_v2_1/representations.rb +131 -56
  266. data/generated/google/apis/content_v2_1/service.rb +190 -107
  267. data/generated/google/apis/content_v2_1.rb +1 -1
  268. data/generated/google/apis/customsearch_v1/service.rb +2 -2
  269. data/generated/google/apis/dataflow_v1b3/classes.rb +148 -31
  270. data/generated/google/apis/dataflow_v1b3/representations.rb +45 -0
  271. data/generated/google/apis/dataflow_v1b3/service.rb +415 -56
  272. data/generated/google/apis/dataflow_v1b3.rb +1 -1
  273. data/generated/google/apis/datafusion_v1beta1/classes.rb +1304 -0
  274. data/generated/google/apis/datafusion_v1beta1/representations.rb +469 -0
  275. data/generated/google/apis/datafusion_v1beta1/service.rb +657 -0
  276. data/generated/google/apis/datafusion_v1beta1.rb +43 -0
  277. data/generated/google/apis/dataproc_v1/classes.rb +27 -22
  278. data/generated/google/apis/dataproc_v1/representations.rb +1 -0
  279. data/generated/google/apis/dataproc_v1/service.rb +261 -45
  280. data/generated/google/apis/dataproc_v1.rb +1 -1
  281. data/generated/google/apis/dataproc_v1beta2/classes.rb +534 -50
  282. data/generated/google/apis/dataproc_v1beta2/representations.rb +185 -7
  283. data/generated/google/apis/dataproc_v1beta2/service.rb +617 -51
  284. data/generated/google/apis/dataproc_v1beta2.rb +1 -1
  285. data/generated/google/apis/datastore_v1/classes.rb +20 -16
  286. data/generated/google/apis/datastore_v1/service.rb +15 -15
  287. data/generated/google/apis/datastore_v1.rb +1 -1
  288. data/generated/google/apis/datastore_v1beta1/classes.rb +10 -10
  289. data/generated/google/apis/datastore_v1beta1/service.rb +2 -2
  290. data/generated/google/apis/datastore_v1beta1.rb +1 -1
  291. data/generated/google/apis/datastore_v1beta3/classes.rb +10 -6
  292. data/generated/google/apis/datastore_v1beta3/service.rb +7 -7
  293. data/generated/google/apis/datastore_v1beta3.rb +1 -1
  294. data/generated/google/apis/deploymentmanager_alpha/service.rb +37 -37
  295. data/generated/google/apis/deploymentmanager_v2/service.rb +18 -18
  296. data/generated/google/apis/deploymentmanager_v2beta/service.rb +32 -32
  297. data/generated/google/apis/dfareporting_v3_1/service.rb +206 -206
  298. data/generated/google/apis/dfareporting_v3_2/service.rb +206 -206
  299. data/generated/google/apis/dfareporting_v3_3/classes.rb +3 -3
  300. data/generated/google/apis/dfareporting_v3_3/service.rb +204 -204
  301. data/generated/google/apis/dfareporting_v3_3.rb +1 -1
  302. data/generated/google/apis/dialogflow_v2/classes.rb +367 -82
  303. data/generated/google/apis/dialogflow_v2/representations.rb +99 -0
  304. data/generated/google/apis/dialogflow_v2/service.rb +76 -60
  305. data/generated/google/apis/dialogflow_v2.rb +1 -1
  306. data/generated/google/apis/dialogflow_v2beta1/classes.rb +199 -88
  307. data/generated/google/apis/dialogflow_v2beta1/representations.rb +31 -0
  308. data/generated/google/apis/dialogflow_v2beta1/service.rb +154 -94
  309. data/generated/google/apis/dialogflow_v2beta1.rb +1 -1
  310. data/generated/google/apis/digitalassetlinks_v1/service.rb +7 -6
  311. data/generated/google/apis/digitalassetlinks_v1.rb +1 -1
  312. data/generated/google/apis/discovery_v1/service.rb +2 -2
  313. data/generated/google/apis/dlp_v2/classes.rb +116 -45
  314. data/generated/google/apis/dlp_v2/representations.rb +32 -0
  315. data/generated/google/apis/dlp_v2/service.rb +85 -45
  316. data/generated/google/apis/dlp_v2.rb +1 -1
  317. data/generated/google/apis/dns_v1/classes.rb +83 -1
  318. data/generated/google/apis/dns_v1/representations.rb +34 -0
  319. data/generated/google/apis/dns_v1/service.rb +15 -15
  320. data/generated/google/apis/dns_v1.rb +1 -1
  321. data/generated/google/apis/dns_v1beta2/classes.rb +81 -1
  322. data/generated/google/apis/dns_v1beta2/representations.rb +33 -0
  323. data/generated/google/apis/dns_v1beta2/service.rb +21 -21
  324. data/generated/google/apis/dns_v1beta2.rb +1 -1
  325. data/generated/google/apis/dns_v2beta1/classes.rb +83 -1
  326. data/generated/google/apis/dns_v2beta1/representations.rb +34 -0
  327. data/generated/google/apis/dns_v2beta1/service.rb +16 -16
  328. data/generated/google/apis/dns_v2beta1.rb +1 -1
  329. data/generated/google/apis/docs_v1/classes.rb +265 -47
  330. data/generated/google/apis/docs_v1/representations.rb +96 -0
  331. data/generated/google/apis/docs_v1/service.rb +3 -3
  332. data/generated/google/apis/docs_v1.rb +1 -1
  333. data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +6 -4
  334. data/generated/google/apis/doubleclickbidmanager_v1/service.rb +9 -9
  335. data/generated/google/apis/doubleclickbidmanager_v1.rb +1 -1
  336. data/generated/google/apis/doubleclicksearch_v2/service.rb +10 -10
  337. data/generated/google/apis/drive_v2/classes.rb +601 -80
  338. data/generated/google/apis/drive_v2/representations.rb +152 -0
  339. data/generated/google/apis/drive_v2/service.rb +574 -164
  340. data/generated/google/apis/drive_v2.rb +1 -1
  341. data/generated/google/apis/drive_v3/classes.rb +591 -75
  342. data/generated/google/apis/drive_v3/representations.rb +151 -0
  343. data/generated/google/apis/drive_v3/service.rb +483 -116
  344. data/generated/google/apis/drive_v3.rb +1 -1
  345. data/generated/google/apis/driveactivity_v2/classes.rb +149 -17
  346. data/generated/google/apis/driveactivity_v2/representations.rb +69 -0
  347. data/generated/google/apis/driveactivity_v2/service.rb +1 -1
  348. data/generated/google/apis/driveactivity_v2.rb +1 -1
  349. data/generated/google/apis/factchecktools_v1alpha1/classes.rb +459 -0
  350. data/generated/google/apis/factchecktools_v1alpha1/representations.rb +207 -0
  351. data/generated/google/apis/factchecktools_v1alpha1/service.rb +300 -0
  352. data/generated/google/apis/factchecktools_v1alpha1.rb +34 -0
  353. data/generated/google/apis/fcm_v1/classes.rb +424 -0
  354. data/generated/google/apis/fcm_v1/representations.rb +167 -0
  355. data/generated/google/apis/fcm_v1/service.rb +97 -0
  356. data/generated/google/apis/fcm_v1.rb +35 -0
  357. data/generated/google/apis/file_v1/classes.rb +646 -11
  358. data/generated/google/apis/file_v1/representations.rb +207 -0
  359. data/generated/google/apis/file_v1/service.rb +196 -6
  360. data/generated/google/apis/file_v1.rb +1 -1
  361. data/generated/google/apis/file_v1beta1/classes.rb +461 -19
  362. data/generated/google/apis/file_v1beta1/representations.rb +137 -0
  363. data/generated/google/apis/file_v1beta1/service.rb +11 -11
  364. data/generated/google/apis/file_v1beta1.rb +1 -1
  365. data/generated/google/apis/firebasedynamiclinks_v1/classes.rb +41 -14
  366. data/generated/google/apis/firebasedynamiclinks_v1/representations.rb +4 -0
  367. data/generated/google/apis/firebasedynamiclinks_v1/service.rb +5 -5
  368. data/generated/google/apis/firebasedynamiclinks_v1.rb +1 -1
  369. data/generated/google/apis/firebasehosting_v1beta1/classes.rb +13 -13
  370. data/generated/google/apis/firebasehosting_v1beta1/service.rb +14 -14
  371. data/generated/google/apis/firebasehosting_v1beta1.rb +1 -1
  372. data/generated/google/apis/firebaserules_v1/classes.rb +10 -2
  373. data/generated/google/apis/firebaserules_v1/service.rb +12 -12
  374. data/generated/google/apis/firebaserules_v1.rb +1 -1
  375. data/generated/google/apis/firestore_v1/classes.rb +15 -15
  376. data/generated/google/apis/firestore_v1/service.rb +28 -28
  377. data/generated/google/apis/firestore_v1.rb +1 -1
  378. data/generated/google/apis/firestore_v1beta1/classes.rb +15 -15
  379. data/generated/google/apis/firestore_v1beta1/service.rb +19 -19
  380. data/generated/google/apis/firestore_v1beta1.rb +1 -1
  381. data/generated/google/apis/firestore_v1beta2/classes.rb +10 -10
  382. data/generated/google/apis/firestore_v1beta2/service.rb +9 -9
  383. data/generated/google/apis/firestore_v1beta2.rb +1 -1
  384. data/generated/google/apis/fitness_v1/classes.rb +4 -1
  385. data/generated/google/apis/fitness_v1/service.rb +14 -58
  386. data/generated/google/apis/fitness_v1.rb +1 -1
  387. data/generated/google/apis/fusiontables_v1/service.rb +32 -32
  388. data/generated/google/apis/fusiontables_v2/service.rb +34 -34
  389. data/generated/google/apis/games_configuration_v1configuration/service.rb +13 -13
  390. data/generated/google/apis/games_management_v1management/service.rb +27 -27
  391. data/generated/google/apis/games_management_v1management.rb +2 -2
  392. data/generated/google/apis/games_v1/service.rb +53 -53
  393. data/generated/google/apis/games_v1.rb +3 -3
  394. data/generated/google/apis/genomics_v1/classes.rb +190 -3321
  395. data/generated/google/apis/genomics_v1/representations.rb +128 -1265
  396. data/generated/google/apis/genomics_v1/service.rb +75 -1982
  397. data/generated/google/apis/genomics_v1.rb +1 -10
  398. data/generated/google/apis/genomics_v1alpha2/classes.rb +13 -53
  399. data/generated/google/apis/genomics_v1alpha2/representations.rb +0 -26
  400. data/generated/google/apis/genomics_v1alpha2/service.rb +11 -12
  401. data/generated/google/apis/genomics_v1alpha2.rb +1 -1
  402. data/generated/google/apis/genomics_v2alpha1/classes.rb +26 -58
  403. data/generated/google/apis/genomics_v2alpha1/representations.rb +1 -26
  404. data/generated/google/apis/genomics_v2alpha1/service.rb +6 -7
  405. data/generated/google/apis/genomics_v2alpha1.rb +1 -1
  406. data/generated/google/apis/gmail_v1/classes.rb +29 -0
  407. data/generated/google/apis/gmail_v1/representations.rb +13 -0
  408. data/generated/google/apis/gmail_v1/service.rb +142 -66
  409. data/generated/google/apis/gmail_v1.rb +1 -1
  410. data/generated/google/apis/groupsmigration_v1/service.rb +1 -1
  411. data/generated/google/apis/groupssettings_v1/classes.rb +126 -1
  412. data/generated/google/apis/groupssettings_v1/representations.rb +18 -0
  413. data/generated/google/apis/groupssettings_v1/service.rb +4 -4
  414. data/generated/google/apis/groupssettings_v1.rb +2 -2
  415. data/generated/google/apis/healthcare_v1alpha2/classes.rb +2849 -0
  416. data/generated/google/apis/healthcare_v1alpha2/representations.rb +1260 -0
  417. data/generated/google/apis/healthcare_v1alpha2/service.rb +4011 -0
  418. data/generated/google/apis/healthcare_v1alpha2.rb +34 -0
  419. data/generated/google/apis/healthcare_v1beta1/classes.rb +2464 -0
  420. data/generated/google/apis/healthcare_v1beta1/representations.rb +1042 -0
  421. data/generated/google/apis/healthcare_v1beta1/service.rb +3413 -0
  422. data/generated/google/apis/healthcare_v1beta1.rb +34 -0
  423. data/generated/google/apis/iam_v1/classes.rb +171 -1
  424. data/generated/google/apis/iam_v1/representations.rb +95 -0
  425. data/generated/google/apis/iam_v1/service.rb +249 -39
  426. data/generated/google/apis/iam_v1.rb +1 -1
  427. data/generated/google/apis/iamcredentials_v1/classes.rb +8 -4
  428. data/generated/google/apis/iamcredentials_v1/service.rb +15 -10
  429. data/generated/google/apis/iamcredentials_v1.rb +1 -1
  430. data/generated/google/apis/iap_v1/classes.rb +1 -1
  431. data/generated/google/apis/iap_v1/service.rb +3 -3
  432. data/generated/google/apis/iap_v1.rb +1 -1
  433. data/generated/google/apis/iap_v1beta1/classes.rb +1 -1
  434. data/generated/google/apis/iap_v1beta1/service.rb +3 -3
  435. data/generated/google/apis/iap_v1beta1.rb +1 -1
  436. data/generated/google/apis/identitytoolkit_v3/service.rb +20 -20
  437. data/generated/google/apis/indexing_v3/service.rb +2 -2
  438. data/generated/google/apis/jobs_v2/classes.rb +16 -17
  439. data/generated/google/apis/jobs_v2/service.rb +17 -17
  440. data/generated/google/apis/jobs_v2.rb +1 -1
  441. data/generated/google/apis/jobs_v3/classes.rb +14 -8
  442. data/generated/google/apis/jobs_v3/service.rb +16 -17
  443. data/generated/google/apis/jobs_v3.rb +1 -1
  444. data/generated/google/apis/jobs_v3p1beta1/classes.rb +26 -20
  445. data/generated/google/apis/jobs_v3p1beta1/service.rb +17 -18
  446. data/generated/google/apis/jobs_v3p1beta1.rb +1 -1
  447. data/generated/google/apis/kgsearch_v1/service.rb +1 -1
  448. data/generated/google/apis/language_v1/classes.rb +8 -7
  449. data/generated/google/apis/language_v1/service.rb +6 -6
  450. data/generated/google/apis/language_v1.rb +1 -1
  451. data/generated/google/apis/language_v1beta1/classes.rb +5 -5
  452. data/generated/google/apis/language_v1beta1/service.rb +4 -4
  453. data/generated/google/apis/language_v1beta1.rb +1 -1
  454. data/generated/google/apis/language_v1beta2/classes.rb +8 -7
  455. data/generated/google/apis/language_v1beta2/service.rb +6 -6
  456. data/generated/google/apis/language_v1beta2.rb +1 -1
  457. data/generated/google/apis/libraryagent_v1/service.rb +6 -6
  458. data/generated/google/apis/licensing_v1/service.rb +7 -7
  459. data/generated/google/apis/logging_v2/classes.rb +8 -3
  460. data/generated/google/apis/logging_v2/representations.rb +1 -0
  461. data/generated/google/apis/logging_v2/service.rb +72 -72
  462. data/generated/google/apis/logging_v2.rb +1 -1
  463. data/generated/google/apis/manufacturers_v1/service.rb +4 -4
  464. data/generated/google/apis/mirror_v1/service.rb +24 -24
  465. data/generated/google/apis/ml_v1/classes.rb +240 -52
  466. data/generated/google/apis/ml_v1/representations.rb +25 -2
  467. data/generated/google/apis/ml_v1/service.rb +36 -36
  468. data/generated/google/apis/ml_v1.rb +1 -1
  469. data/generated/google/apis/monitoring_v3/classes.rb +22 -18
  470. data/generated/google/apis/monitoring_v3/representations.rb +2 -1
  471. data/generated/google/apis/monitoring_v3/service.rb +42 -37
  472. data/generated/google/apis/monitoring_v3.rb +1 -1
  473. data/generated/google/apis/oauth2_v1/classes.rb +0 -124
  474. data/generated/google/apis/oauth2_v1/representations.rb +0 -62
  475. data/generated/google/apis/oauth2_v1/service.rb +3 -162
  476. data/generated/google/apis/oauth2_v1.rb +3 -6
  477. data/generated/google/apis/oauth2_v2/service.rb +4 -4
  478. data/generated/google/apis/oauth2_v2.rb +3 -6
  479. data/generated/google/apis/oslogin_v1/service.rb +8 -7
  480. data/generated/google/apis/oslogin_v1.rb +3 -2
  481. data/generated/google/apis/oslogin_v1alpha/service.rb +8 -7
  482. data/generated/google/apis/oslogin_v1alpha.rb +3 -2
  483. data/generated/google/apis/oslogin_v1beta/service.rb +8 -7
  484. data/generated/google/apis/oslogin_v1beta.rb +3 -2
  485. data/generated/google/apis/pagespeedonline_v1/service.rb +1 -1
  486. data/generated/google/apis/pagespeedonline_v2/service.rb +1 -1
  487. data/generated/google/apis/pagespeedonline_v4/service.rb +1 -1
  488. data/generated/google/apis/pagespeedonline_v5/classes.rb +43 -0
  489. data/generated/google/apis/pagespeedonline_v5/representations.rb +18 -0
  490. data/generated/google/apis/pagespeedonline_v5/service.rb +1 -1
  491. data/generated/google/apis/pagespeedonline_v5.rb +1 -1
  492. data/generated/google/apis/people_v1/classes.rb +38 -29
  493. data/generated/google/apis/people_v1/representations.rb +1 -0
  494. data/generated/google/apis/people_v1/service.rb +18 -13
  495. data/generated/google/apis/people_v1.rb +2 -5
  496. data/generated/google/apis/playcustomapp_v1/service.rb +1 -1
  497. data/generated/google/apis/plus_domains_v1/service.rb +18 -392
  498. data/generated/google/apis/plus_domains_v1.rb +4 -10
  499. data/generated/google/apis/plus_v1/service.rb +16 -16
  500. data/generated/google/apis/plus_v1.rb +4 -4
  501. data/generated/google/apis/poly_v1/classes.rb +8 -6
  502. data/generated/google/apis/poly_v1/service.rb +15 -12
  503. data/generated/google/apis/poly_v1.rb +1 -1
  504. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +8 -6
  505. data/generated/google/apis/proximitybeacon_v1beta1/service.rb +17 -17
  506. data/generated/google/apis/proximitybeacon_v1beta1.rb +1 -1
  507. data/generated/google/apis/pubsub_v1/classes.rb +55 -39
  508. data/generated/google/apis/pubsub_v1/representations.rb +16 -0
  509. data/generated/google/apis/pubsub_v1/service.rb +46 -69
  510. data/generated/google/apis/pubsub_v1.rb +1 -1
  511. data/generated/google/apis/pubsub_v1beta1a/service.rb +15 -15
  512. data/generated/google/apis/pubsub_v1beta2/classes.rb +45 -1
  513. data/generated/google/apis/pubsub_v1beta2/representations.rb +16 -0
  514. data/generated/google/apis/pubsub_v1beta2/service.rb +20 -20
  515. data/generated/google/apis/pubsub_v1beta2.rb +1 -1
  516. data/generated/google/apis/redis_v1/classes.rb +30 -10
  517. data/generated/google/apis/redis_v1/representations.rb +13 -0
  518. data/generated/google/apis/redis_v1/service.rb +51 -15
  519. data/generated/google/apis/redis_v1.rb +1 -1
  520. data/generated/google/apis/redis_v1beta1/classes.rb +18 -21
  521. data/generated/google/apis/redis_v1beta1/representations.rb +0 -1
  522. data/generated/google/apis/redis_v1beta1/service.rb +15 -15
  523. data/generated/google/apis/redis_v1beta1.rb +1 -1
  524. data/generated/google/apis/remotebuildexecution_v1/classes.rb +50 -35
  525. data/generated/google/apis/remotebuildexecution_v1/representations.rb +2 -0
  526. data/generated/google/apis/remotebuildexecution_v1/service.rb +7 -7
  527. data/generated/google/apis/remotebuildexecution_v1.rb +1 -1
  528. data/generated/google/apis/remotebuildexecution_v1alpha/classes.rb +48 -33
  529. data/generated/google/apis/remotebuildexecution_v1alpha/representations.rb +2 -0
  530. data/generated/google/apis/remotebuildexecution_v1alpha/service.rb +10 -10
  531. data/generated/google/apis/remotebuildexecution_v1alpha.rb +1 -1
  532. data/generated/google/apis/remotebuildexecution_v2/classes.rb +58 -43
  533. data/generated/google/apis/remotebuildexecution_v2/representations.rb +2 -0
  534. data/generated/google/apis/remotebuildexecution_v2/service.rb +9 -9
  535. data/generated/google/apis/remotebuildexecution_v2.rb +1 -1
  536. data/generated/google/apis/replicapool_v1beta1/service.rb +10 -10
  537. data/generated/google/apis/reseller_v1/classes.rb +32 -39
  538. data/generated/google/apis/reseller_v1/service.rb +18 -18
  539. data/generated/google/apis/reseller_v1.rb +1 -1
  540. data/generated/google/apis/run_v1/classes.rb +73 -0
  541. data/generated/google/apis/run_v1/representations.rb +43 -0
  542. data/generated/google/apis/run_v1/service.rb +90 -0
  543. data/generated/google/apis/run_v1.rb +35 -0
  544. data/generated/google/apis/run_v1alpha1/classes.rb +3882 -0
  545. data/generated/google/apis/run_v1alpha1/representations.rb +1425 -0
  546. data/generated/google/apis/run_v1alpha1/service.rb +2071 -0
  547. data/generated/google/apis/run_v1alpha1.rb +35 -0
  548. data/generated/google/apis/runtimeconfig_v1/classes.rb +11 -11
  549. data/generated/google/apis/runtimeconfig_v1/service.rb +3 -3
  550. data/generated/google/apis/runtimeconfig_v1.rb +1 -1
  551. data/generated/google/apis/runtimeconfig_v1beta1/classes.rb +26 -25
  552. data/generated/google/apis/runtimeconfig_v1beta1/service.rb +22 -22
  553. data/generated/google/apis/runtimeconfig_v1beta1.rb +1 -1
  554. data/generated/google/apis/safebrowsing_v4/service.rb +7 -7
  555. data/generated/google/apis/script_v1/classes.rb +167 -6
  556. data/generated/google/apis/script_v1/representations.rb +79 -1
  557. data/generated/google/apis/script_v1/service.rb +16 -16
  558. data/generated/google/apis/script_v1.rb +1 -1
  559. data/generated/google/apis/searchconsole_v1/service.rb +1 -1
  560. data/generated/google/apis/securitycenter_v1/classes.rb +1627 -0
  561. data/generated/google/apis/securitycenter_v1/representations.rb +569 -0
  562. data/generated/google/apis/securitycenter_v1/service.rb +1110 -0
  563. data/generated/google/apis/securitycenter_v1.rb +35 -0
  564. data/generated/google/apis/securitycenter_v1beta1/classes.rb +1514 -0
  565. data/generated/google/apis/securitycenter_v1beta1/representations.rb +548 -0
  566. data/generated/google/apis/securitycenter_v1beta1/service.rb +1035 -0
  567. data/generated/google/apis/securitycenter_v1beta1.rb +35 -0
  568. data/generated/google/apis/servicebroker_v1/classes.rb +1 -1
  569. data/generated/google/apis/servicebroker_v1/service.rb +3 -3
  570. data/generated/google/apis/servicebroker_v1.rb +1 -1
  571. data/generated/google/apis/servicebroker_v1alpha1/classes.rb +1 -1
  572. data/generated/google/apis/servicebroker_v1alpha1/service.rb +16 -16
  573. data/generated/google/apis/servicebroker_v1alpha1.rb +1 -1
  574. data/generated/google/apis/servicebroker_v1beta1/classes.rb +1 -1
  575. data/generated/google/apis/servicebroker_v1beta1/service.rb +21 -21
  576. data/generated/google/apis/servicebroker_v1beta1.rb +1 -1
  577. data/generated/google/apis/serviceconsumermanagement_v1/classes.rb +453 -149
  578. data/generated/google/apis/serviceconsumermanagement_v1/representations.rb +202 -29
  579. data/generated/google/apis/serviceconsumermanagement_v1/service.rb +148 -62
  580. data/generated/google/apis/serviceconsumermanagement_v1.rb +1 -1
  581. data/generated/google/apis/servicecontrol_v1/classes.rb +122 -25
  582. data/generated/google/apis/servicecontrol_v1/representations.rb +47 -0
  583. data/generated/google/apis/servicecontrol_v1/service.rb +3 -3
  584. data/generated/google/apis/servicecontrol_v1.rb +1 -1
  585. data/generated/google/apis/servicemanagement_v1/classes.rb +93 -110
  586. data/generated/google/apis/servicemanagement_v1/representations.rb +13 -26
  587. data/generated/google/apis/servicemanagement_v1/service.rb +30 -27
  588. data/generated/google/apis/servicemanagement_v1.rb +1 -1
  589. data/generated/google/apis/servicenetworking_v1/classes.rb +3626 -0
  590. data/generated/google/apis/servicenetworking_v1/representations.rb +1055 -0
  591. data/generated/google/apis/servicenetworking_v1/service.rb +440 -0
  592. data/generated/google/apis/servicenetworking_v1.rb +38 -0
  593. data/generated/google/apis/servicenetworking_v1beta/classes.rb +65 -108
  594. data/generated/google/apis/servicenetworking_v1beta/representations.rb +2 -29
  595. data/generated/google/apis/servicenetworking_v1beta/service.rb +6 -6
  596. data/generated/google/apis/servicenetworking_v1beta.rb +1 -1
  597. data/generated/google/apis/serviceusage_v1/classes.rb +160 -109
  598. data/generated/google/apis/serviceusage_v1/representations.rb +42 -26
  599. data/generated/google/apis/serviceusage_v1/service.rb +17 -19
  600. data/generated/google/apis/serviceusage_v1.rb +1 -1
  601. data/generated/google/apis/serviceusage_v1beta1/classes.rb +161 -110
  602. data/generated/google/apis/serviceusage_v1beta1/representations.rb +42 -26
  603. data/generated/google/apis/serviceusage_v1beta1/service.rb +7 -7
  604. data/generated/google/apis/serviceusage_v1beta1.rb +1 -1
  605. data/generated/google/apis/sheets_v4/classes.rb +115 -26
  606. data/generated/google/apis/sheets_v4/service.rb +17 -17
  607. data/generated/google/apis/sheets_v4.rb +1 -1
  608. data/generated/google/apis/site_verification_v1/service.rb +7 -7
  609. data/generated/google/apis/slides_v1/classes.rb +2 -2
  610. data/generated/google/apis/slides_v1/service.rb +5 -5
  611. data/generated/google/apis/slides_v1.rb +1 -1
  612. data/generated/google/apis/sourcerepo_v1/classes.rb +183 -1
  613. data/generated/google/apis/sourcerepo_v1/representations.rb +45 -0
  614. data/generated/google/apis/sourcerepo_v1/service.rb +45 -10
  615. data/generated/google/apis/sourcerepo_v1.rb +1 -1
  616. data/generated/google/apis/spanner_v1/classes.rb +231 -17
  617. data/generated/google/apis/spanner_v1/representations.rb +66 -0
  618. data/generated/google/apis/spanner_v1/service.rb +92 -42
  619. data/generated/google/apis/spanner_v1.rb +1 -1
  620. data/generated/google/apis/speech_v1/classes.rb +110 -13
  621. data/generated/google/apis/speech_v1/representations.rb +24 -0
  622. data/generated/google/apis/speech_v1/service.rb +9 -7
  623. data/generated/google/apis/speech_v1.rb +1 -1
  624. data/generated/google/apis/speech_v1p1beta1/classes.rb +19 -13
  625. data/generated/google/apis/speech_v1p1beta1/representations.rb +1 -0
  626. data/generated/google/apis/speech_v1p1beta1/service.rb +9 -7
  627. data/generated/google/apis/speech_v1p1beta1.rb +1 -1
  628. data/generated/google/apis/sqladmin_v1beta4/classes.rb +94 -17
  629. data/generated/google/apis/sqladmin_v1beta4/representations.rb +36 -0
  630. data/generated/google/apis/sqladmin_v1beta4/service.rb +44 -44
  631. data/generated/google/apis/sqladmin_v1beta4.rb +1 -1
  632. data/generated/google/apis/storage_v1/classes.rb +201 -4
  633. data/generated/google/apis/storage_v1/representations.rb +76 -1
  634. data/generated/google/apis/storage_v1/service.rb +488 -93
  635. data/generated/google/apis/storage_v1.rb +1 -1
  636. data/generated/google/apis/storage_v1beta1/service.rb +24 -24
  637. data/generated/google/apis/storage_v1beta2/service.rb +34 -34
  638. data/generated/google/apis/storagetransfer_v1/classes.rb +44 -44
  639. data/generated/google/apis/storagetransfer_v1/service.rb +35 -36
  640. data/generated/google/apis/storagetransfer_v1.rb +2 -2
  641. data/generated/google/apis/streetviewpublish_v1/classes.rb +27 -27
  642. data/generated/google/apis/streetviewpublish_v1/service.rb +36 -40
  643. data/generated/google/apis/streetviewpublish_v1.rb +1 -1
  644. data/generated/google/apis/surveys_v2/service.rb +8 -8
  645. data/generated/google/apis/tagmanager_v1/service.rb +49 -95
  646. data/generated/google/apis/tagmanager_v1.rb +1 -1
  647. data/generated/google/apis/tagmanager_v2/classes.rb +197 -292
  648. data/generated/google/apis/tagmanager_v2/representations.rb +62 -103
  649. data/generated/google/apis/tagmanager_v2/service.rb +287 -249
  650. data/generated/google/apis/tagmanager_v2.rb +1 -1
  651. data/generated/google/apis/tasks_v1/service.rb +19 -19
  652. data/generated/google/apis/tasks_v1.rb +2 -2
  653. data/generated/google/apis/testing_v1/classes.rb +44 -39
  654. data/generated/google/apis/testing_v1/representations.rb +3 -1
  655. data/generated/google/apis/testing_v1/service.rb +5 -5
  656. data/generated/google/apis/testing_v1.rb +1 -1
  657. data/generated/google/apis/texttospeech_v1/service.rb +2 -2
  658. data/generated/google/apis/texttospeech_v1.rb +1 -1
  659. data/generated/google/apis/texttospeech_v1beta1/service.rb +2 -2
  660. data/generated/google/apis/texttospeech_v1beta1.rb +1 -1
  661. data/generated/google/apis/toolresults_v1beta3/classes.rb +340 -17
  662. data/generated/google/apis/toolresults_v1beta3/representations.rb +90 -0
  663. data/generated/google/apis/toolresults_v1beta3/service.rb +140 -24
  664. data/generated/google/apis/toolresults_v1beta3.rb +1 -1
  665. data/generated/google/apis/tpu_v1/classes.rb +21 -15
  666. data/generated/google/apis/tpu_v1/representations.rb +1 -0
  667. data/generated/google/apis/tpu_v1/service.rb +17 -17
  668. data/generated/google/apis/tpu_v1.rb +1 -1
  669. data/generated/google/apis/tpu_v1alpha1/classes.rb +21 -15
  670. data/generated/google/apis/tpu_v1alpha1/representations.rb +1 -0
  671. data/generated/google/apis/tpu_v1alpha1/service.rb +17 -17
  672. data/generated/google/apis/tpu_v1alpha1.rb +1 -1
  673. data/generated/google/apis/translate_v2/service.rb +5 -5
  674. data/generated/google/apis/urlshortener_v1/service.rb +3 -3
  675. data/generated/google/apis/vault_v1/classes.rb +44 -18
  676. data/generated/google/apis/vault_v1/representations.rb +4 -0
  677. data/generated/google/apis/vault_v1/service.rb +28 -28
  678. data/generated/google/apis/vault_v1.rb +1 -1
  679. data/generated/google/apis/videointelligence_v1/classes.rb +2193 -350
  680. data/generated/google/apis/videointelligence_v1/representations.rb +805 -6
  681. data/generated/google/apis/videointelligence_v1/service.rb +7 -6
  682. data/generated/google/apis/videointelligence_v1.rb +3 -2
  683. data/generated/google/apis/videointelligence_v1beta2/classes.rb +2448 -605
  684. data/generated/google/apis/videointelligence_v1beta2/representations.rb +806 -7
  685. data/generated/google/apis/videointelligence_v1beta2/service.rb +3 -2
  686. data/generated/google/apis/videointelligence_v1beta2.rb +3 -2
  687. data/generated/google/apis/videointelligence_v1p1beta1/classes.rb +2422 -579
  688. data/generated/google/apis/videointelligence_v1p1beta1/representations.rb +806 -7
  689. data/generated/google/apis/videointelligence_v1p1beta1/service.rb +3 -2
  690. data/generated/google/apis/videointelligence_v1p1beta1.rb +3 -2
  691. data/generated/google/apis/videointelligence_v1p2beta1/classes.rb +2645 -830
  692. data/generated/google/apis/videointelligence_v1p2beta1/representations.rb +796 -12
  693. data/generated/google/apis/videointelligence_v1p2beta1/service.rb +3 -2
  694. data/generated/google/apis/videointelligence_v1p2beta1.rb +3 -2
  695. data/generated/google/apis/videointelligence_v1p3beta1/classes.rb +4687 -0
  696. data/generated/google/apis/videointelligence_v1p3beta1/representations.rb +2005 -0
  697. data/generated/google/apis/videointelligence_v1p3beta1/service.rb +94 -0
  698. data/generated/google/apis/videointelligence_v1p3beta1.rb +36 -0
  699. data/generated/google/apis/vision_v1/classes.rb +4397 -124
  700. data/generated/google/apis/vision_v1/representations.rb +2366 -541
  701. data/generated/google/apis/vision_v1/service.rb +160 -33
  702. data/generated/google/apis/vision_v1.rb +1 -1
  703. data/generated/google/apis/vision_v1p1beta1/classes.rb +4451 -158
  704. data/generated/google/apis/vision_v1p1beta1/representations.rb +2415 -576
  705. data/generated/google/apis/vision_v1p1beta1/service.rb +73 -2
  706. data/generated/google/apis/vision_v1p1beta1.rb +1 -1
  707. data/generated/google/apis/vision_v1p2beta1/classes.rb +4451 -158
  708. data/generated/google/apis/vision_v1p2beta1/representations.rb +2443 -604
  709. data/generated/google/apis/vision_v1p2beta1/service.rb +73 -2
  710. data/generated/google/apis/vision_v1p2beta1.rb +1 -1
  711. data/generated/google/apis/webfonts_v1/service.rb +1 -1
  712. data/generated/google/apis/webmasters_v3/classes.rb +0 -166
  713. data/generated/google/apis/webmasters_v3/representations.rb +0 -93
  714. data/generated/google/apis/webmasters_v3/service.rb +9 -180
  715. data/generated/google/apis/webmasters_v3.rb +1 -1
  716. data/generated/google/apis/websecurityscanner_v1alpha/service.rb +13 -13
  717. data/generated/google/apis/websecurityscanner_v1beta/classes.rb +973 -0
  718. data/generated/google/apis/websecurityscanner_v1beta/representations.rb +452 -0
  719. data/generated/google/apis/websecurityscanner_v1beta/service.rb +548 -0
  720. data/generated/google/apis/websecurityscanner_v1beta.rb +34 -0
  721. data/generated/google/apis/youtube_analytics_v1/service.rb +8 -8
  722. data/generated/google/apis/youtube_analytics_v1beta1/service.rb +8 -8
  723. data/generated/google/apis/youtube_analytics_v2/service.rb +8 -8
  724. data/generated/google/apis/youtube_partner_v1/classes.rb +15 -34
  725. data/generated/google/apis/youtube_partner_v1/representations.rb +4 -17
  726. data/generated/google/apis/youtube_partner_v1/service.rb +74 -74
  727. data/generated/google/apis/youtube_partner_v1.rb +1 -1
  728. data/generated/google/apis/youtube_v3/service.rb +71 -71
  729. data/generated/google/apis/youtube_v3.rb +1 -1
  730. data/generated/google/apis/youtubereporting_v1/classes.rb +2 -2
  731. data/generated/google/apis/youtubereporting_v1/service.rb +8 -8
  732. data/generated/google/apis/youtubereporting_v1.rb +1 -1
  733. data/google-api-client.gemspec +2 -2
  734. data/lib/google/apis/core/http_command.rb +1 -0
  735. data/lib/google/apis/core/json_representation.rb +4 -0
  736. data/lib/google/apis/core/upload.rb +3 -3
  737. data/lib/google/apis/generator/model.rb +1 -1
  738. data/lib/google/apis/generator/templates/_method.tmpl +3 -3
  739. data/lib/google/apis/version.rb +1 -1
  740. metadata +86 -17
  741. data/.kokoro/common.cfg +0 -22
  742. data/.kokoro/windows.sh +0 -32
  743. data/generated/google/apis/logging_v2beta1/classes.rb +0 -1765
  744. data/generated/google/apis/logging_v2beta1/representations.rb +0 -537
  745. data/generated/google/apis/logging_v2beta1/service.rb +0 -570
  746. data/generated/google/apis/logging_v2beta1.rb +0 -46
  747. data/generated/google/apis/partners_v2/classes.rb +0 -2260
  748. data/generated/google/apis/partners_v2/representations.rb +0 -905
  749. data/generated/google/apis/partners_v2/service.rb +0 -1077
  750. data/samples/web/.env +0 -2
@@ -22,322 +22,6 @@ module Google
22
22
  module Apis
23
23
  module GenomicsV1
24
24
 
25
- # An annotation describes a region of reference genome. The value of an
26
- # annotation may be one of several canonical types, supplemented by arbitrary
27
- # info tags. An annotation is not inherently associated with a specific
28
- # sample or individual (though a client could choose to use annotations in
29
- # this way). Example canonical annotation types are `GENE` and
30
- # `VARIANT`.
31
- class Annotation
32
- include Google::Apis::Core::Hashable
33
-
34
- # The annotation set to which this annotation belongs.
35
- # Corresponds to the JSON property `annotationSetId`
36
- # @return [String]
37
- attr_accessor :annotation_set_id
38
-
39
- # The end position of the range on the reference, 0-based exclusive.
40
- # Corresponds to the JSON property `end`
41
- # @return [Fixnum]
42
- attr_accessor :end
43
-
44
- # The server-generated annotation ID, unique across all annotations.
45
- # Corresponds to the JSON property `id`
46
- # @return [String]
47
- attr_accessor :id
48
-
49
- # A map of additional read alignment information. This must be of the form
50
- # map<string, string[]> (string key mapping to a list of string values).
51
- # Corresponds to the JSON property `info`
52
- # @return [Hash<String,Array<Object>>]
53
- attr_accessor :info
54
-
55
- # The display name of this annotation.
56
- # Corresponds to the JSON property `name`
57
- # @return [String]
58
- attr_accessor :name
59
-
60
- # The ID of the Google Genomics reference associated with this range.
61
- # Corresponds to the JSON property `referenceId`
62
- # @return [String]
63
- attr_accessor :reference_id
64
-
65
- # The display name corresponding to the reference specified by
66
- # `referenceId`, for example `chr1`, `1`, or `chrX`.
67
- # Corresponds to the JSON property `referenceName`
68
- # @return [String]
69
- attr_accessor :reference_name
70
-
71
- # Whether this range refers to the reverse strand, as opposed to the forward
72
- # strand. Note that regardless of this field, the start/end position of the
73
- # range always refer to the forward strand.
74
- # Corresponds to the JSON property `reverseStrand`
75
- # @return [Boolean]
76
- attr_accessor :reverse_strand
77
- alias_method :reverse_strand?, :reverse_strand
78
-
79
- # The start position of the range on the reference, 0-based inclusive.
80
- # Corresponds to the JSON property `start`
81
- # @return [Fixnum]
82
- attr_accessor :start
83
-
84
- # A transcript represents the assertion that a particular region of the
85
- # reference genome may be transcribed as RNA.
86
- # Corresponds to the JSON property `transcript`
87
- # @return [Google::Apis::GenomicsV1::Transcript]
88
- attr_accessor :transcript
89
-
90
- # The data type for this annotation. Must match the containing annotation
91
- # set's type.
92
- # Corresponds to the JSON property `type`
93
- # @return [String]
94
- attr_accessor :type
95
-
96
- # A variant annotation, which describes the effect of a variant on the
97
- # genome, the coding sequence, and/or higher level consequences at the
98
- # organism level e.g. pathogenicity. This field is only set for annotations
99
- # of type `VARIANT`.
100
- # Corresponds to the JSON property `variant`
101
- # @return [Google::Apis::GenomicsV1::VariantAnnotation]
102
- attr_accessor :variant
103
-
104
- def initialize(**args)
105
- update!(**args)
106
- end
107
-
108
- # Update properties of this object
109
- def update!(**args)
110
- @annotation_set_id = args[:annotation_set_id] if args.key?(:annotation_set_id)
111
- @end = args[:end] if args.key?(:end)
112
- @id = args[:id] if args.key?(:id)
113
- @info = args[:info] if args.key?(:info)
114
- @name = args[:name] if args.key?(:name)
115
- @reference_id = args[:reference_id] if args.key?(:reference_id)
116
- @reference_name = args[:reference_name] if args.key?(:reference_name)
117
- @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
118
- @start = args[:start] if args.key?(:start)
119
- @transcript = args[:transcript] if args.key?(:transcript)
120
- @type = args[:type] if args.key?(:type)
121
- @variant = args[:variant] if args.key?(:variant)
122
- end
123
- end
124
-
125
- # An annotation set is a logical grouping of annotations that share consistent
126
- # type information and provenance. Examples of annotation sets include 'all
127
- # genes from refseq', and 'all variant annotations from ClinVar'.
128
- class AnnotationSet
129
- include Google::Apis::Core::Hashable
130
-
131
- # The dataset to which this annotation set belongs.
132
- # Corresponds to the JSON property `datasetId`
133
- # @return [String]
134
- attr_accessor :dataset_id
135
-
136
- # The server-generated annotation set ID, unique across all annotation sets.
137
- # Corresponds to the JSON property `id`
138
- # @return [String]
139
- attr_accessor :id
140
-
141
- # A map of additional read alignment information. This must be of the form
142
- # map<string, string[]> (string key mapping to a list of string values).
143
- # Corresponds to the JSON property `info`
144
- # @return [Hash<String,Array<Object>>]
145
- attr_accessor :info
146
-
147
- # The display name for this annotation set.
148
- # Corresponds to the JSON property `name`
149
- # @return [String]
150
- attr_accessor :name
151
-
152
- # The ID of the reference set that defines the coordinate space for this
153
- # set's annotations.
154
- # Corresponds to the JSON property `referenceSetId`
155
- # @return [String]
156
- attr_accessor :reference_set_id
157
-
158
- # The source URI describing the file from which this annotation set was
159
- # generated, if any.
160
- # Corresponds to the JSON property `sourceUri`
161
- # @return [String]
162
- attr_accessor :source_uri
163
-
164
- # The type of annotations contained within this set.
165
- # Corresponds to the JSON property `type`
166
- # @return [String]
167
- attr_accessor :type
168
-
169
- def initialize(**args)
170
- update!(**args)
171
- end
172
-
173
- # Update properties of this object
174
- def update!(**args)
175
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
176
- @id = args[:id] if args.key?(:id)
177
- @info = args[:info] if args.key?(:info)
178
- @name = args[:name] if args.key?(:name)
179
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
180
- @source_uri = args[:source_uri] if args.key?(:source_uri)
181
- @type = args[:type] if args.key?(:type)
182
- end
183
- end
184
-
185
- #
186
- class BatchCreateAnnotationsRequest
187
- include Google::Apis::Core::Hashable
188
-
189
- # The annotations to be created. At most 4096 can be specified in a single
190
- # request.
191
- # Corresponds to the JSON property `annotations`
192
- # @return [Array<Google::Apis::GenomicsV1::Annotation>]
193
- attr_accessor :annotations
194
-
195
- # A unique request ID which enables the server to detect duplicated requests.
196
- # If provided, duplicated requests will result in the same response; if not
197
- # provided, duplicated requests may result in duplicated data. For a given
198
- # annotation set, callers should not reuse `request_id`s when writing
199
- # different batches of annotations - behavior in this case is undefined.
200
- # A common approach is to use a UUID. For batch jobs where worker crashes are
201
- # a possibility, consider using some unique variant of a worker or run ID.
202
- # Corresponds to the JSON property `requestId`
203
- # @return [String]
204
- attr_accessor :request_id
205
-
206
- def initialize(**args)
207
- update!(**args)
208
- end
209
-
210
- # Update properties of this object
211
- def update!(**args)
212
- @annotations = args[:annotations] if args.key?(:annotations)
213
- @request_id = args[:request_id] if args.key?(:request_id)
214
- end
215
- end
216
-
217
- #
218
- class BatchCreateAnnotationsResponse
219
- include Google::Apis::Core::Hashable
220
-
221
- # The resulting per-annotation entries, ordered consistently with the
222
- # original request.
223
- # Corresponds to the JSON property `entries`
224
- # @return [Array<Google::Apis::GenomicsV1::Entry>]
225
- attr_accessor :entries
226
-
227
- def initialize(**args)
228
- update!(**args)
229
- end
230
-
231
- # Update properties of this object
232
- def update!(**args)
233
- @entries = args[:entries] if args.key?(:entries)
234
- end
235
- end
236
-
237
- # Associates `members` with a `role`.
238
- class Binding
239
- include Google::Apis::Core::Hashable
240
-
241
- # Represents an expression text. Example:
242
- # title: "User account presence"
243
- # description: "Determines whether the request has a user account"
244
- # expression: "size(request.user) > 0"
245
- # Corresponds to the JSON property `condition`
246
- # @return [Google::Apis::GenomicsV1::Expr]
247
- attr_accessor :condition
248
-
249
- # Specifies the identities requesting access for a Cloud Platform resource.
250
- # `members` can have the following values:
251
- # * `allUsers`: A special identifier that represents anyone who is
252
- # on the internet; with or without a Google account.
253
- # * `allAuthenticatedUsers`: A special identifier that represents anyone
254
- # who is authenticated with a Google account or a service account.
255
- # * `user:`emailid``: An email address that represents a specific Google
256
- # account. For example, `alice@gmail.com` .
257
- # * `serviceAccount:`emailid``: An email address that represents a service
258
- # account. For example, `my-other-app@appspot.gserviceaccount.com`.
259
- # * `group:`emailid``: An email address that represents a Google group.
260
- # For example, `admins@example.com`.
261
- # * `domain:`domain``: A Google Apps domain name that represents all the
262
- # users of that domain. For example, `google.com` or `example.com`.
263
- # Corresponds to the JSON property `members`
264
- # @return [Array<String>]
265
- attr_accessor :members
266
-
267
- # Role that is assigned to `members`.
268
- # For example, `roles/viewer`, `roles/editor`, or `roles/owner`.
269
- # Corresponds to the JSON property `role`
270
- # @return [String]
271
- attr_accessor :role
272
-
273
- def initialize(**args)
274
- update!(**args)
275
- end
276
-
277
- # Update properties of this object
278
- def update!(**args)
279
- @condition = args[:condition] if args.key?(:condition)
280
- @members = args[:members] if args.key?(:members)
281
- @role = args[:role] if args.key?(:role)
282
- end
283
- end
284
-
285
- # A call set is a collection of variant calls, typically for one sample. It
286
- # belongs to a variant set.
287
- class CallSet
288
- include Google::Apis::Core::Hashable
289
-
290
- # The date this call set was created in milliseconds from the epoch.
291
- # Corresponds to the JSON property `created`
292
- # @return [Fixnum]
293
- attr_accessor :created
294
-
295
- # The server-generated call set ID, unique across all call sets.
296
- # Corresponds to the JSON property `id`
297
- # @return [String]
298
- attr_accessor :id
299
-
300
- # A map of additional call set information. This must be of the form
301
- # map<string, string[]> (string key mapping to a list of string values).
302
- # Corresponds to the JSON property `info`
303
- # @return [Hash<String,Array<Object>>]
304
- attr_accessor :info
305
-
306
- # The call set name.
307
- # Corresponds to the JSON property `name`
308
- # @return [String]
309
- attr_accessor :name
310
-
311
- # The sample ID this call set corresponds to.
312
- # Corresponds to the JSON property `sampleId`
313
- # @return [String]
314
- attr_accessor :sample_id
315
-
316
- # The IDs of the variant sets this call set belongs to. This field must
317
- # have exactly length one, as a call set belongs to a single variant set.
318
- # This field is repeated for compatibility with the
319
- # [GA4GH 0.5.1
320
- # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/
321
- # variants.avdl#L76).
322
- # Corresponds to the JSON property `variantSetIds`
323
- # @return [Array<String>]
324
- attr_accessor :variant_set_ids
325
-
326
- def initialize(**args)
327
- update!(**args)
328
- end
329
-
330
- # Update properties of this object
331
- def update!(**args)
332
- @created = args[:created] if args.key?(:created)
333
- @id = args[:id] if args.key?(:id)
334
- @info = args[:info] if args.key?(:info)
335
- @name = args[:name] if args.key?(:name)
336
- @sample_id = args[:sample_id] if args.key?(:sample_id)
337
- @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
338
- end
339
- end
340
-
341
25
  # The request message for Operations.CancelOperation.
342
26
  class CancelOperationRequest
343
27
  include Google::Apis::Core::Hashable
@@ -351,108 +35,6 @@ module Google
351
35
  end
352
36
  end
353
37
 
354
- # A single CIGAR operation.
355
- class CigarUnit
356
- include Google::Apis::Core::Hashable
357
-
358
- #
359
- # Corresponds to the JSON property `operation`
360
- # @return [String]
361
- attr_accessor :operation
362
-
363
- # The number of genomic bases that the operation runs for. Required.
364
- # Corresponds to the JSON property `operationLength`
365
- # @return [Fixnum]
366
- attr_accessor :operation_length
367
-
368
- # `referenceSequence` is only used at mismatches
369
- # (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
370
- # Filling this field replaces SAM's MD tag. If the relevant information is
371
- # not available, this field is unset.
372
- # Corresponds to the JSON property `referenceSequence`
373
- # @return [String]
374
- attr_accessor :reference_sequence
375
-
376
- def initialize(**args)
377
- update!(**args)
378
- end
379
-
380
- # Update properties of this object
381
- def update!(**args)
382
- @operation = args[:operation] if args.key?(:operation)
383
- @operation_length = args[:operation_length] if args.key?(:operation_length)
384
- @reference_sequence = args[:reference_sequence] if args.key?(:reference_sequence)
385
- end
386
- end
387
-
388
- #
389
- class ClinicalCondition
390
- include Google::Apis::Core::Hashable
391
-
392
- # The MedGen concept id associated with this gene.
393
- # Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
394
- # Corresponds to the JSON property `conceptId`
395
- # @return [String]
396
- attr_accessor :concept_id
397
-
398
- # The set of external IDs for this condition.
399
- # Corresponds to the JSON property `externalIds`
400
- # @return [Array<Google::Apis::GenomicsV1::ExternalId>]
401
- attr_accessor :external_ids
402
-
403
- # A set of names for the condition.
404
- # Corresponds to the JSON property `names`
405
- # @return [Array<String>]
406
- attr_accessor :names
407
-
408
- # The OMIM id for this condition.
409
- # Search for these IDs at http://omim.org/
410
- # Corresponds to the JSON property `omimId`
411
- # @return [String]
412
- attr_accessor :omim_id
413
-
414
- def initialize(**args)
415
- update!(**args)
416
- end
417
-
418
- # Update properties of this object
419
- def update!(**args)
420
- @concept_id = args[:concept_id] if args.key?(:concept_id)
421
- @external_ids = args[:external_ids] if args.key?(:external_ids)
422
- @names = args[:names] if args.key?(:names)
423
- @omim_id = args[:omim_id] if args.key?(:omim_id)
424
- end
425
- end
426
-
427
- #
428
- class CodingSequence
429
- include Google::Apis::Core::Hashable
430
-
431
- # The end of the coding sequence on this annotation's reference sequence,
432
- # 0-based exclusive. Note that this position is relative to the reference
433
- # start, and *not* the containing annotation start.
434
- # Corresponds to the JSON property `end`
435
- # @return [Fixnum]
436
- attr_accessor :end
437
-
438
- # The start of the coding sequence on this annotation's reference sequence,
439
- # 0-based inclusive. Note that this position is relative to the reference
440
- # start, and *not* the containing annotation start.
441
- # Corresponds to the JSON property `start`
442
- # @return [Fixnum]
443
- attr_accessor :start
444
-
445
- def initialize(**args)
446
- update!(**args)
447
- end
448
-
449
- # Update properties of this object
450
- def update!(**args)
451
- @end = args[:end] if args.key?(:end)
452
- @start = args[:start] if args.key?(:start)
453
- end
454
- end
455
-
456
38
  # Describes a Compute Engine resource that is being managed by a running
457
39
  # pipeline.
458
40
  class ComputeEngine
@@ -585,70 +167,6 @@ module Google
585
167
  end
586
168
  end
587
169
 
588
- # A bucket over which read coverage has been precomputed. A bucket corresponds
589
- # to a specific range of the reference sequence.
590
- class CoverageBucket
591
- include Google::Apis::Core::Hashable
592
-
593
- # The average number of reads which are aligned to each individual
594
- # reference base in this bucket.
595
- # Corresponds to the JSON property `meanCoverage`
596
- # @return [Float]
597
- attr_accessor :mean_coverage
598
-
599
- # A 0-based half-open genomic coordinate range for search requests.
600
- # Corresponds to the JSON property `range`
601
- # @return [Google::Apis::GenomicsV1::Range]
602
- attr_accessor :range
603
-
604
- def initialize(**args)
605
- update!(**args)
606
- end
607
-
608
- # Update properties of this object
609
- def update!(**args)
610
- @mean_coverage = args[:mean_coverage] if args.key?(:mean_coverage)
611
- @range = args[:range] if args.key?(:range)
612
- end
613
- end
614
-
615
- # A Dataset is a collection of genomic data.
616
- class Dataset
617
- include Google::Apis::Core::Hashable
618
-
619
- # The time this dataset was created, in seconds from the epoch.
620
- # Corresponds to the JSON property `createTime`
621
- # @return [String]
622
- attr_accessor :create_time
623
-
624
- # The server-generated dataset ID, unique across all datasets.
625
- # Corresponds to the JSON property `id`
626
- # @return [String]
627
- attr_accessor :id
628
-
629
- # The dataset name.
630
- # Corresponds to the JSON property `name`
631
- # @return [String]
632
- attr_accessor :name
633
-
634
- # The Google Cloud project ID that this dataset belongs to.
635
- # Corresponds to the JSON property `projectId`
636
- # @return [String]
637
- attr_accessor :project_id
638
-
639
- def initialize(**args)
640
- update!(**args)
641
- end
642
-
643
- # Update properties of this object
644
- def update!(**args)
645
- @create_time = args[:create_time] if args.key?(:create_time)
646
- @id = args[:id] if args.key?(:id)
647
- @name = args[:name] if args.key?(:name)
648
- @project_id = args[:project_id] if args.key?(:project_id)
649
- end
650
- end
651
-
652
170
  # An event generated whenever a resource limitation or transient error
653
171
  # delays execution of a pipeline that was otherwise ready to run.
654
172
  class DelayedEvent
@@ -699,76 +217,8 @@ module Google
699
217
  end
700
218
  end
701
219
 
702
- #
703
- class Entry
704
- include Google::Apis::Core::Hashable
705
-
706
- # An annotation describes a region of reference genome. The value of an
707
- # annotation may be one of several canonical types, supplemented by arbitrary
708
- # info tags. An annotation is not inherently associated with a specific
709
- # sample or individual (though a client could choose to use annotations in
710
- # this way). Example canonical annotation types are `GENE` and
711
- # `VARIANT`.
712
- # Corresponds to the JSON property `annotation`
713
- # @return [Google::Apis::GenomicsV1::Annotation]
714
- attr_accessor :annotation
715
-
716
- # The `Status` type defines a logical error model that is suitable for different
717
- # programming environments, including REST APIs and RPC APIs. It is used by
718
- # [gRPC](https://github.com/grpc). The error model is designed to be:
719
- # - Simple to use and understand for most users
720
- # - Flexible enough to meet unexpected needs
721
- # # Overview
722
- # The `Status` message contains three pieces of data: error code, error message,
723
- # and error details. The error code should be an enum value of
724
- # google.rpc.Code, but it may accept additional error codes if needed. The
725
- # error message should be a developer-facing English message that helps
726
- # developers *understand* and *resolve* the error. If a localized user-facing
727
- # error message is needed, put the localized message in the error details or
728
- # localize it in the client. The optional error details may contain arbitrary
729
- # information about the error. There is a predefined set of error detail types
730
- # in the package `google.rpc` that can be used for common error conditions.
731
- # # Language mapping
732
- # The `Status` message is the logical representation of the error model, but it
733
- # is not necessarily the actual wire format. When the `Status` message is
734
- # exposed in different client libraries and different wire protocols, it can be
735
- # mapped differently. For example, it will likely be mapped to some exceptions
736
- # in Java, but more likely mapped to some error codes in C.
737
- # # Other uses
738
- # The error model and the `Status` message can be used in a variety of
739
- # environments, either with or without APIs, to provide a
740
- # consistent developer experience across different environments.
741
- # Example uses of this error model include:
742
- # - Partial errors. If a service needs to return partial errors to the client,
743
- # it may embed the `Status` in the normal response to indicate the partial
744
- # errors.
745
- # - Workflow errors. A typical workflow has multiple steps. Each step may
746
- # have a `Status` message for error reporting.
747
- # - Batch operations. If a client uses batch request and batch response, the
748
- # `Status` message should be used directly inside batch response, one for
749
- # each error sub-response.
750
- # - Asynchronous operations. If an API call embeds asynchronous operation
751
- # results in its response, the status of those operations should be
752
- # represented directly using the `Status` message.
753
- # - Logging. If some API errors are stored in logs, the message `Status` could
754
- # be used directly after any stripping needed for security/privacy reasons.
755
- # Corresponds to the JSON property `status`
756
- # @return [Google::Apis::GenomicsV1::Status]
757
- attr_accessor :status
758
-
759
- def initialize(**args)
760
- update!(**args)
761
- end
762
-
763
- # Update properties of this object
764
- def update!(**args)
765
- @annotation = args[:annotation] if args.key?(:annotation)
766
- @status = args[:status] if args.key?(:status)
767
- end
768
- end
769
-
770
- # Carries information about events that occur during pipeline execution.
771
- class Event
220
+ # Carries information about events that occur during pipeline execution.
221
+ class Event
772
222
  include Google::Apis::Core::Hashable
773
223
 
774
224
  # A human-readable description of the event. Note that these strings can
@@ -800,81 +250,20 @@ module Google
800
250
  end
801
251
  end
802
252
 
803
- #
804
- class Exon
805
- include Google::Apis::Core::Hashable
806
-
807
- # The end position of the exon on this annotation's reference sequence,
808
- # 0-based exclusive. Note that this is relative to the reference start, and
809
- # *not* the containing annotation start.
810
- # Corresponds to the JSON property `end`
811
- # @return [Fixnum]
812
- attr_accessor :end
813
-
814
- # The frame of this exon. Contains a value of 0, 1, or 2, which indicates
815
- # the offset of the first coding base of the exon within the reading frame
816
- # of the coding DNA sequence, if any. This field is dependent on the
817
- # strandedness of this annotation (see
818
- # Annotation.reverse_strand).
819
- # For forward stranded annotations, this offset is relative to the
820
- # exon.start. For reverse
821
- # strand annotations, this offset is relative to the
822
- # exon.end `- 1`.
823
- # Unset if this exon does not intersect the coding sequence. Upon creation
824
- # of a transcript, the frame must be populated for all or none of the
825
- # coding exons.
826
- # Corresponds to the JSON property `frame`
827
- # @return [Fixnum]
828
- attr_accessor :frame
829
-
830
- # The start position of the exon on this annotation's reference sequence,
831
- # 0-based inclusive. Note that this is relative to the reference start, and
832
- # **not** the containing annotation start.
833
- # Corresponds to the JSON property `start`
834
- # @return [Fixnum]
835
- attr_accessor :start
836
-
837
- def initialize(**args)
838
- update!(**args)
839
- end
840
-
841
- # Update properties of this object
842
- def update!(**args)
843
- @end = args[:end] if args.key?(:end)
844
- @frame = args[:frame] if args.key?(:frame)
845
- @start = args[:start] if args.key?(:start)
846
- end
847
- end
848
-
849
- #
850
- class Experiment
253
+ # An event generated when the execution of a pipeline has failed. Note
254
+ # that other events can continue to occur after this event.
255
+ class FailedEvent
851
256
  include Google::Apis::Core::Hashable
852
257
 
853
- # The instrument model used as part of this experiment. This maps to
854
- # sequencing technology in the SAM spec.
855
- # Corresponds to the JSON property `instrumentModel`
856
- # @return [String]
857
- attr_accessor :instrument_model
858
-
859
- # A client-supplied library identifier; a library is a collection of DNA
860
- # fragments which have been prepared for sequencing from a sample. This
861
- # field is important for quality control as error or bias can be introduced
862
- # during sample preparation.
863
- # Corresponds to the JSON property `libraryId`
864
- # @return [String]
865
- attr_accessor :library_id
866
-
867
- # The platform unit used as part of this experiment, for example
868
- # flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
869
- # @RG PU field in the SAM spec.
870
- # Corresponds to the JSON property `platformUnit`
258
+ # The human-readable description of the cause of the failure.
259
+ # Corresponds to the JSON property `cause`
871
260
  # @return [String]
872
- attr_accessor :platform_unit
261
+ attr_accessor :cause
873
262
 
874
- # The sequencing center used as part of this experiment.
875
- # Corresponds to the JSON property `sequencingCenter`
263
+ # The Google standard error code that best describes this failure.
264
+ # Corresponds to the JSON property `code`
876
265
  # @return [String]
877
- attr_accessor :sequencing_center
266
+ attr_accessor :code
878
267
 
879
268
  def initialize(**args)
880
269
  update!(**args)
@@ -882,36 +271,24 @@ module Google
882
271
 
883
272
  # Update properties of this object
884
273
  def update!(**args)
885
- @instrument_model = args[:instrument_model] if args.key?(:instrument_model)
886
- @library_id = args[:library_id] if args.key?(:library_id)
887
- @platform_unit = args[:platform_unit] if args.key?(:platform_unit)
888
- @sequencing_center = args[:sequencing_center] if args.key?(:sequencing_center)
274
+ @cause = args[:cause] if args.key?(:cause)
275
+ @code = args[:code] if args.key?(:code)
889
276
  end
890
277
  end
891
278
 
892
- # The read group set export request.
893
- class ExportReadGroupSetRequest
279
+ # The response message for Operations.ListOperations.
280
+ class ListOperationsResponse
894
281
  include Google::Apis::Core::Hashable
895
282
 
896
- # Required. A Google Cloud Storage URI for the exported BAM file.
897
- # The currently authenticated user must have write access to the new file.
898
- # An error will be returned if the URI already contains data.
899
- # Corresponds to the JSON property `exportUri`
900
- # @return [String]
901
- attr_accessor :export_uri
902
-
903
- # Required. The Google Cloud project ID that owns this
904
- # export. The caller must have WRITE access to this project.
905
- # Corresponds to the JSON property `projectId`
283
+ # The standard List next-page token.
284
+ # Corresponds to the JSON property `nextPageToken`
906
285
  # @return [String]
907
- attr_accessor :project_id
286
+ attr_accessor :next_page_token
908
287
 
909
- # The reference names to export. If this is not specified, all reference
910
- # sequences, including unmapped reads, are exported.
911
- # Use `*` to export only unmapped reads.
912
- # Corresponds to the JSON property `referenceNames`
913
- # @return [Array<String>]
914
- attr_accessor :reference_names
288
+ # A list of operations that matches the specified filter in the request.
289
+ # Corresponds to the JSON property `operations`
290
+ # @return [Array<Google::Apis::GenomicsV1::Operation>]
291
+ attr_accessor :operations
915
292
 
916
293
  def initialize(**args)
917
294
  update!(**args)
@@ -919,46 +296,84 @@ module Google
919
296
 
920
297
  # Update properties of this object
921
298
  def update!(**args)
922
- @export_uri = args[:export_uri] if args.key?(:export_uri)
923
- @project_id = args[:project_id] if args.key?(:project_id)
924
- @reference_names = args[:reference_names] if args.key?(:reference_names)
299
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
300
+ @operations = args[:operations] if args.key?(:operations)
925
301
  end
926
302
  end
927
303
 
928
- # The variant data export request.
929
- class ExportVariantSetRequest
304
+ # This resource represents a long-running operation that is the result of a
305
+ # network API call.
306
+ class Operation
930
307
  include Google::Apis::Core::Hashable
931
308
 
932
- # Required. The BigQuery dataset to export data to. This dataset must already
933
- # exist. Note that this is distinct from the Genomics concept of "dataset".
934
- # Corresponds to the JSON property `bigqueryDataset`
935
- # @return [String]
936
- attr_accessor :bigquery_dataset
309
+ # If the value is `false`, it means the operation is still in progress.
310
+ # If `true`, the operation is completed, and either `error` or `response` is
311
+ # available.
312
+ # Corresponds to the JSON property `done`
313
+ # @return [Boolean]
314
+ attr_accessor :done
315
+ alias_method :done?, :done
937
316
 
938
- # Required. The BigQuery table to export data to.
939
- # If the table doesn't exist, it will be created. If it already exists, it
940
- # will be overwritten.
941
- # Corresponds to the JSON property `bigqueryTable`
942
- # @return [String]
943
- attr_accessor :bigquery_table
317
+ # The `Status` type defines a logical error model that is suitable for
318
+ # different programming environments, including REST APIs and RPC APIs. It is
319
+ # used by [gRPC](https://github.com/grpc). The error model is designed to be:
320
+ # - Simple to use and understand for most users
321
+ # - Flexible enough to meet unexpected needs
322
+ # # Overview
323
+ # The `Status` message contains three pieces of data: error code, error
324
+ # message, and error details. The error code should be an enum value of
325
+ # google.rpc.Code, but it may accept additional error codes if needed. The
326
+ # error message should be a developer-facing English message that helps
327
+ # developers *understand* and *resolve* the error. If a localized user-facing
328
+ # error message is needed, put the localized message in the error details or
329
+ # localize it in the client. The optional error details may contain arbitrary
330
+ # information about the error. There is a predefined set of error detail types
331
+ # in the package `google.rpc` that can be used for common error conditions.
332
+ # # Language mapping
333
+ # The `Status` message is the logical representation of the error model, but it
334
+ # is not necessarily the actual wire format. When the `Status` message is
335
+ # exposed in different client libraries and different wire protocols, it can be
336
+ # mapped differently. For example, it will likely be mapped to some exceptions
337
+ # in Java, but more likely mapped to some error codes in C.
338
+ # # Other uses
339
+ # The error model and the `Status` message can be used in a variety of
340
+ # environments, either with or without APIs, to provide a
341
+ # consistent developer experience across different environments.
342
+ # Example uses of this error model include:
343
+ # - Partial errors. If a service needs to return partial errors to the client,
344
+ # it may embed the `Status` in the normal response to indicate the partial
345
+ # errors.
346
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
347
+ # have a `Status` message for error reporting.
348
+ # - Batch operations. If a client uses batch request and batch response, the
349
+ # `Status` message should be used directly inside batch response, one for
350
+ # each error sub-response.
351
+ # - Asynchronous operations. If an API call embeds asynchronous operation
352
+ # results in its response, the status of those operations should be
353
+ # represented directly using the `Status` message.
354
+ # - Logging. If some API errors are stored in logs, the message `Status` could
355
+ # be used directly after any stripping needed for security/privacy reasons.
356
+ # Corresponds to the JSON property `error`
357
+ # @return [Google::Apis::GenomicsV1::Status]
358
+ attr_accessor :error
944
359
 
945
- # If provided, only variant call information from the specified call sets
946
- # will be exported. By default all variant calls are exported.
947
- # Corresponds to the JSON property `callSetIds`
948
- # @return [Array<String>]
949
- attr_accessor :call_set_ids
360
+ # An OperationMetadata or Metadata object. This will always be returned with the
361
+ # Operation.
362
+ # Corresponds to the JSON property `metadata`
363
+ # @return [Hash<String,Object>]
364
+ attr_accessor :metadata
950
365
 
951
- # The format for the exported data.
952
- # Corresponds to the JSON property `format`
366
+ # The server-assigned name, which is only unique within the same service that
367
+ # originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-
368
+ # qzoWAgEw`
369
+ # Corresponds to the JSON property `name`
953
370
  # @return [String]
954
- attr_accessor :format
371
+ attr_accessor :name
955
372
 
956
- # Required. The Google Cloud project ID that owns the destination
957
- # BigQuery dataset. The caller must have WRITE access to this project. This
958
- # project will also own the resulting export job.
959
- # Corresponds to the JSON property `projectId`
960
- # @return [String]
961
- attr_accessor :project_id
373
+ # An Empty object.
374
+ # Corresponds to the JSON property `response`
375
+ # @return [Hash<String,Object>]
376
+ attr_accessor :response
962
377
 
963
378
  def initialize(**args)
964
379
  update!(**args)
@@ -966,47 +381,33 @@ module Google
966
381
 
967
382
  # Update properties of this object
968
383
  def update!(**args)
969
- @bigquery_dataset = args[:bigquery_dataset] if args.key?(:bigquery_dataset)
970
- @bigquery_table = args[:bigquery_table] if args.key?(:bigquery_table)
971
- @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
972
- @format = args[:format] if args.key?(:format)
973
- @project_id = args[:project_id] if args.key?(:project_id)
384
+ @done = args[:done] if args.key?(:done)
385
+ @error = args[:error] if args.key?(:error)
386
+ @metadata = args[:metadata] if args.key?(:metadata)
387
+ @name = args[:name] if args.key?(:name)
388
+ @response = args[:response] if args.key?(:response)
974
389
  end
975
390
  end
976
391
 
977
- # Represents an expression text. Example:
978
- # title: "User account presence"
979
- # description: "Determines whether the request has a user account"
980
- # expression: "size(request.user) > 0"
981
- class Expr
392
+ # An event that occurred during an Operation.
393
+ class OperationEvent
982
394
  include Google::Apis::Core::Hashable
983
395
 
984
- # An optional description of the expression. This is a longer text which
985
- # describes the expression, e.g. when hovered over it in a UI.
396
+ # Required description of event.
986
397
  # Corresponds to the JSON property `description`
987
398
  # @return [String]
988
399
  attr_accessor :description
989
400
 
990
- # Textual representation of an expression in
991
- # Common Expression Language syntax.
992
- # The application context of the containing message determines which
993
- # well-known feature set of CEL is supported.
994
- # Corresponds to the JSON property `expression`
995
- # @return [String]
996
- attr_accessor :expression
997
-
998
- # An optional string indicating the location of the expression for error
999
- # reporting, e.g. a file name and a position in the file.
1000
- # Corresponds to the JSON property `location`
401
+ # Optional time of when event finished. An event can have a start time and no
402
+ # finish time. If an event has a finish time, there must be a start time.
403
+ # Corresponds to the JSON property `endTime`
1001
404
  # @return [String]
1002
- attr_accessor :location
405
+ attr_accessor :end_time
1003
406
 
1004
- # An optional title for the expression, i.e. a short string describing
1005
- # its purpose. This can be used e.g. in UIs which allow to enter the
1006
- # expression.
1007
- # Corresponds to the JSON property `title`
407
+ # Optional time of when event started.
408
+ # Corresponds to the JSON property `startTime`
1008
409
  # @return [String]
1009
- attr_accessor :title
410
+ attr_accessor :start_time
1010
411
 
1011
412
  def initialize(**args)
1012
413
  update!(**args)
@@ -1015,51 +416,65 @@ module Google
1015
416
  # Update properties of this object
1016
417
  def update!(**args)
1017
418
  @description = args[:description] if args.key?(:description)
1018
- @expression = args[:expression] if args.key?(:expression)
1019
- @location = args[:location] if args.key?(:location)
1020
- @title = args[:title] if args.key?(:title)
419
+ @end_time = args[:end_time] if args.key?(:end_time)
420
+ @start_time = args[:start_time] if args.key?(:start_time)
1021
421
  end
1022
422
  end
1023
423
 
1024
- #
1025
- class ExternalId
424
+ # Metadata describing an Operation.
425
+ class OperationMetadata
1026
426
  include Google::Apis::Core::Hashable
1027
427
 
1028
- # The id used by the source of this data.
1029
- # Corresponds to the JSON property `id`
428
+ # This field is deprecated. Use `labels` instead. Optionally provided by the
429
+ # caller when submitting the request that creates the operation.
430
+ # Corresponds to the JSON property `clientId`
1030
431
  # @return [String]
1031
- attr_accessor :id
432
+ attr_accessor :client_id
1032
433
 
1033
- # The name of the source of this data.
1034
- # Corresponds to the JSON property `sourceName`
434
+ # The time at which the job was submitted to the Genomics service.
435
+ # Corresponds to the JSON property `createTime`
1035
436
  # @return [String]
1036
- attr_accessor :source_name
437
+ attr_accessor :create_time
1037
438
 
1038
- def initialize(**args)
1039
- update!(**args)
1040
- end
439
+ # The time at which the job stopped running.
440
+ # Corresponds to the JSON property `endTime`
441
+ # @return [String]
442
+ attr_accessor :end_time
1041
443
 
1042
- # Update properties of this object
1043
- def update!(**args)
1044
- @id = args[:id] if args.key?(:id)
1045
- @source_name = args[:source_name] if args.key?(:source_name)
1046
- end
1047
- end
444
+ # Optional event messages that were generated during the job's execution.
445
+ # This also contains any warnings that were generated during import
446
+ # or export.
447
+ # Corresponds to the JSON property `events`
448
+ # @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
449
+ attr_accessor :events
1048
450
 
1049
- # An event generated when the execution of a pipeline has failed. Note
1050
- # that other events can continue to occur after this event.
1051
- class FailedEvent
1052
- include Google::Apis::Core::Hashable
451
+ # Optionally provided by the caller when submitting the request that creates
452
+ # the operation.
453
+ # Corresponds to the JSON property `labels`
454
+ # @return [Hash<String,String>]
455
+ attr_accessor :labels
1053
456
 
1054
- # The human-readable description of the cause of the failure.
1055
- # Corresponds to the JSON property `cause`
457
+ # The Google Cloud Project in which the job is scoped.
458
+ # Corresponds to the JSON property `projectId`
1056
459
  # @return [String]
1057
- attr_accessor :cause
460
+ attr_accessor :project_id
1058
461
 
1059
- # The Google standard error code that best describes this failure.
1060
- # Corresponds to the JSON property `code`
462
+ # The original request that started the operation. Note that this will be in
463
+ # current version of the API. If the operation was started with v1beta2 API
464
+ # and a GetOperation is performed on v1 API, a v1 request will be returned.
465
+ # Corresponds to the JSON property `request`
466
+ # @return [Hash<String,Object>]
467
+ attr_accessor :request
468
+
469
+ # Runtime metadata on this Operation.
470
+ # Corresponds to the JSON property `runtimeMetadata`
471
+ # @return [Hash<String,Object>]
472
+ attr_accessor :runtime_metadata
473
+
474
+ # The time at which the job began to run.
475
+ # Corresponds to the JSON property `startTime`
1061
476
  # @return [String]
1062
- attr_accessor :code
477
+ attr_accessor :start_time
1063
478
 
1064
479
  def initialize(**args)
1065
480
  update!(**args)
@@ -1067,60 +482,45 @@ module Google
1067
482
 
1068
483
  # Update properties of this object
1069
484
  def update!(**args)
1070
- @cause = args[:cause] if args.key?(:cause)
1071
- @code = args[:code] if args.key?(:code)
485
+ @client_id = args[:client_id] if args.key?(:client_id)
486
+ @create_time = args[:create_time] if args.key?(:create_time)
487
+ @end_time = args[:end_time] if args.key?(:end_time)
488
+ @events = args[:events] if args.key?(:events)
489
+ @labels = args[:labels] if args.key?(:labels)
490
+ @project_id = args[:project_id] if args.key?(:project_id)
491
+ @request = args[:request] if args.key?(:request)
492
+ @runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
493
+ @start_time = args[:start_time] if args.key?(:start_time)
1072
494
  end
1073
495
  end
1074
496
 
1075
- # Request message for `GetIamPolicy` method.
1076
- class GetIamPolicyRequest
497
+ # An event generated when the worker starts pulling an image.
498
+ class PullStartedEvent
1077
499
  include Google::Apis::Core::Hashable
1078
500
 
501
+ # The URI of the image that was pulled.
502
+ # Corresponds to the JSON property `imageUri`
503
+ # @return [String]
504
+ attr_accessor :image_uri
505
+
1079
506
  def initialize(**args)
1080
507
  update!(**args)
1081
508
  end
1082
509
 
1083
510
  # Update properties of this object
1084
511
  def update!(**args)
512
+ @image_uri = args[:image_uri] if args.key?(:image_uri)
1085
513
  end
1086
514
  end
1087
515
 
1088
- # The read group set import request.
1089
- class ImportReadGroupSetsRequest
516
+ # An event generated when the worker stops pulling an image.
517
+ class PullStoppedEvent
1090
518
  include Google::Apis::Core::Hashable
1091
519
 
1092
- # Required. The ID of the dataset these read group sets will belong to. The
1093
- # caller must have WRITE permissions to this dataset.
1094
- # Corresponds to the JSON property `datasetId`
1095
- # @return [String]
1096
- attr_accessor :dataset_id
1097
-
1098
- # The partition strategy describes how read groups are partitioned into read
1099
- # group sets.
1100
- # Corresponds to the JSON property `partitionStrategy`
1101
- # @return [String]
1102
- attr_accessor :partition_strategy
1103
-
1104
- # The reference set to which the imported read group sets are aligned to, if
1105
- # any. The reference names of this reference set must be a superset of those
1106
- # found in the imported file headers. If no reference set id is provided, a
1107
- # best effort is made to associate with a matching reference set.
1108
- # Corresponds to the JSON property `referenceSetId`
520
+ # The URI of the image that was pulled.
521
+ # Corresponds to the JSON property `imageUri`
1109
522
  # @return [String]
1110
- attr_accessor :reference_set_id
1111
-
1112
- # A list of URIs pointing at [BAM
1113
- # files](https://samtools.github.io/hts-specs/SAMv1.pdf)
1114
- # in Google Cloud Storage.
1115
- # Those URIs can include wildcards (*), but do not add or remove
1116
- # matching files before import has completed.
1117
- # Note that Google Cloud Storage object listing is only eventually
1118
- # consistent: files added may be not be immediately visible to
1119
- # everyone. Thus, if using a wildcard it is preferable not to start
1120
- # the import immediately after the files are created.
1121
- # Corresponds to the JSON property `sourceUris`
1122
- # @return [Array<String>]
1123
- attr_accessor :source_uris
523
+ attr_accessor :image_uri
1124
524
 
1125
525
  def initialize(**args)
1126
526
  update!(**args)
@@ -1128,74 +528,35 @@ module Google
1128
528
 
1129
529
  # Update properties of this object
1130
530
  def update!(**args)
1131
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
1132
- @partition_strategy = args[:partition_strategy] if args.key?(:partition_strategy)
1133
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1134
- @source_uris = args[:source_uris] if args.key?(:source_uris)
531
+ @image_uri = args[:image_uri] if args.key?(:image_uri)
1135
532
  end
1136
533
  end
1137
534
 
1138
- # The read group set import response.
1139
- class ImportReadGroupSetsResponse
535
+ # The response to the RunPipeline method, returned in the operation's result
536
+ # field on success.
537
+ class RunPipelineResponse
1140
538
  include Google::Apis::Core::Hashable
1141
539
 
1142
- # IDs of the read group sets that were created.
1143
- # Corresponds to the JSON property `readGroupSetIds`
1144
- # @return [Array<String>]
1145
- attr_accessor :read_group_set_ids
1146
-
1147
540
  def initialize(**args)
1148
541
  update!(**args)
1149
542
  end
1150
543
 
1151
544
  # Update properties of this object
1152
545
  def update!(**args)
1153
- @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
1154
546
  end
1155
547
  end
1156
548
 
1157
- # The variant data import request.
1158
- class ImportVariantsRequest
549
+ # Runtime metadata that will be populated in the
550
+ # runtimeMetadata
551
+ # field of the Operation associated with a RunPipeline execution.
552
+ class RuntimeMetadata
1159
553
  include Google::Apis::Core::Hashable
1160
554
 
1161
- # The format of the variant data being imported. If unspecified, defaults to
1162
- # to `VCF`.
1163
- # Corresponds to the JSON property `format`
1164
- # @return [String]
1165
- attr_accessor :format
1166
-
1167
- # A mapping between info field keys and the InfoMergeOperations to
1168
- # be performed on them. This is plumbed down to the MergeVariantRequests
1169
- # generated by the resulting import job.
1170
- # Corresponds to the JSON property `infoMergeConfig`
1171
- # @return [Hash<String,String>]
1172
- attr_accessor :info_merge_config
1173
-
1174
- # Convert reference names to the canonical representation.
1175
- # hg19 haploytypes (those reference names containing "_hap")
1176
- # are not modified in any way.
1177
- # All other reference names are modified according to the following rules:
1178
- # The reference name is capitalized.
1179
- # The "chr" prefix is dropped for all autosomes and sex chromsomes.
1180
- # For example "chr17" becomes "17" and "chrX" becomes "X".
1181
- # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
1182
- # Corresponds to the JSON property `normalizeReferenceNames`
1183
- # @return [Boolean]
1184
- attr_accessor :normalize_reference_names
1185
- alias_method :normalize_reference_names?, :normalize_reference_names
1186
-
1187
- # A list of URIs referencing variant files in Google Cloud Storage. URIs can
1188
- # include wildcards [as described
1189
- # here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
1190
- # Note that recursive wildcards ('**') are not supported.
1191
- # Corresponds to the JSON property `sourceUris`
1192
- # @return [Array<String>]
1193
- attr_accessor :source_uris
1194
-
1195
- # Required. The variant set to which variant data should be imported.
1196
- # Corresponds to the JSON property `variantSetId`
1197
- # @return [String]
1198
- attr_accessor :variant_set_id
555
+ # Describes a Compute Engine resource that is being managed by a running
556
+ # pipeline.
557
+ # Corresponds to the JSON property `computeEngine`
558
+ # @return [Google::Apis::GenomicsV1::ComputeEngine]
559
+ attr_accessor :compute_engine
1199
560
 
1200
561
  def initialize(**args)
1201
562
  update!(**args)
@@ -1203,2024 +564,18 @@ module Google
1203
564
 
1204
565
  # Update properties of this object
1205
566
  def update!(**args)
1206
- @format = args[:format] if args.key?(:format)
1207
- @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
1208
- @normalize_reference_names = args[:normalize_reference_names] if args.key?(:normalize_reference_names)
1209
- @source_uris = args[:source_uris] if args.key?(:source_uris)
1210
- @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
1211
- end
1212
- end
1213
-
1214
- # The variant data import response.
1215
- class ImportVariantsResponse
1216
- include Google::Apis::Core::Hashable
1217
-
1218
- # IDs of the call sets created during the import.
1219
- # Corresponds to the JSON property `callSetIds`
1220
- # @return [Array<String>]
1221
- attr_accessor :call_set_ids
1222
-
1223
- def initialize(**args)
1224
- update!(**args)
1225
- end
1226
-
1227
- # Update properties of this object
1228
- def update!(**args)
1229
- @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
1230
- end
1231
- end
1232
-
1233
- # A linear alignment can be represented by one CIGAR string. Describes the
1234
- # mapped position and local alignment of the read to the reference.
1235
- class LinearAlignment
1236
- include Google::Apis::Core::Hashable
1237
-
1238
- # Represents the local alignment of this sequence (alignment matches, indels,
1239
- # etc) against the reference.
1240
- # Corresponds to the JSON property `cigar`
1241
- # @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
1242
- attr_accessor :cigar
1243
-
1244
- # The mapping quality of this alignment. Represents how likely
1245
- # the read maps to this position as opposed to other locations.
1246
- # Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
1247
- # the nearest integer.
1248
- # Corresponds to the JSON property `mappingQuality`
1249
- # @return [Fixnum]
1250
- attr_accessor :mapping_quality
1251
-
1252
- # An abstraction for referring to a genomic position, in relation to some
1253
- # already known reference. For now, represents a genomic position as a
1254
- # reference name, a base number on that reference (0-based), and a
1255
- # determination of forward or reverse strand.
1256
- # Corresponds to the JSON property `position`
1257
- # @return [Google::Apis::GenomicsV1::Position]
1258
- attr_accessor :position
1259
-
1260
- def initialize(**args)
1261
- update!(**args)
1262
- end
1263
-
1264
- # Update properties of this object
1265
- def update!(**args)
1266
- @cigar = args[:cigar] if args.key?(:cigar)
1267
- @mapping_quality = args[:mapping_quality] if args.key?(:mapping_quality)
1268
- @position = args[:position] if args.key?(:position)
1269
- end
1270
- end
1271
-
1272
- #
1273
- class ListBasesResponse
1274
- include Google::Apis::Core::Hashable
1275
-
1276
- # The continuation token, which is used to page through large result sets.
1277
- # Provide this value in a subsequent request to return the next page of
1278
- # results. This field will be empty if there aren't any additional results.
1279
- # Corresponds to the JSON property `nextPageToken`
1280
- # @return [String]
1281
- attr_accessor :next_page_token
1282
-
1283
- # The offset position (0-based) of the given `sequence` from the
1284
- # start of this `Reference`. This value will differ for each page
1285
- # in a paginated request.
1286
- # Corresponds to the JSON property `offset`
1287
- # @return [Fixnum]
1288
- attr_accessor :offset
1289
-
1290
- # A substring of the bases that make up this reference.
1291
- # Corresponds to the JSON property `sequence`
1292
- # @return [String]
1293
- attr_accessor :sequence
1294
-
1295
- def initialize(**args)
1296
- update!(**args)
1297
- end
1298
-
1299
- # Update properties of this object
1300
- def update!(**args)
1301
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1302
- @offset = args[:offset] if args.key?(:offset)
1303
- @sequence = args[:sequence] if args.key?(:sequence)
1304
- end
1305
- end
1306
-
1307
- #
1308
- class ListCoverageBucketsResponse
1309
- include Google::Apis::Core::Hashable
1310
-
1311
- # The length of each coverage bucket in base pairs. Note that buckets at the
1312
- # end of a reference sequence may be shorter. This value is omitted if the
1313
- # bucket width is infinity (the default behaviour, with no range or
1314
- # `targetBucketWidth`).
1315
- # Corresponds to the JSON property `bucketWidth`
1316
- # @return [Fixnum]
1317
- attr_accessor :bucket_width
1318
-
1319
- # The coverage buckets. The list of buckets is sparse; a bucket with 0
1320
- # overlapping reads is not returned. A bucket never crosses more than one
1321
- # reference sequence. Each bucket has width `bucketWidth`, unless
1322
- # its end is the end of the reference sequence.
1323
- # Corresponds to the JSON property `coverageBuckets`
1324
- # @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
1325
- attr_accessor :coverage_buckets
1326
-
1327
- # The continuation token, which is used to page through large result sets.
1328
- # Provide this value in a subsequent request to return the next page of
1329
- # results. This field will be empty if there aren't any additional results.
1330
- # Corresponds to the JSON property `nextPageToken`
1331
- # @return [String]
1332
- attr_accessor :next_page_token
1333
-
1334
- def initialize(**args)
1335
- update!(**args)
1336
- end
1337
-
1338
- # Update properties of this object
1339
- def update!(**args)
1340
- @bucket_width = args[:bucket_width] if args.key?(:bucket_width)
1341
- @coverage_buckets = args[:coverage_buckets] if args.key?(:coverage_buckets)
1342
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1343
- end
1344
- end
1345
-
1346
- # The dataset list response.
1347
- class ListDatasetsResponse
1348
- include Google::Apis::Core::Hashable
1349
-
1350
- # The list of matching Datasets.
1351
- # Corresponds to the JSON property `datasets`
1352
- # @return [Array<Google::Apis::GenomicsV1::Dataset>]
1353
- attr_accessor :datasets
1354
-
1355
- # The continuation token, which is used to page through large result sets.
1356
- # Provide this value in a subsequent request to return the next page of
1357
- # results. This field will be empty if there aren't any additional results.
1358
- # Corresponds to the JSON property `nextPageToken`
1359
- # @return [String]
1360
- attr_accessor :next_page_token
1361
-
1362
- def initialize(**args)
1363
- update!(**args)
1364
- end
1365
-
1366
- # Update properties of this object
1367
- def update!(**args)
1368
- @datasets = args[:datasets] if args.key?(:datasets)
1369
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1370
- end
1371
- end
1372
-
1373
- # The response message for Operations.ListOperations.
1374
- class ListOperationsResponse
1375
- include Google::Apis::Core::Hashable
1376
-
1377
- # The standard List next-page token.
1378
- # Corresponds to the JSON property `nextPageToken`
1379
- # @return [String]
1380
- attr_accessor :next_page_token
1381
-
1382
- # A list of operations that matches the specified filter in the request.
1383
- # Corresponds to the JSON property `operations`
1384
- # @return [Array<Google::Apis::GenomicsV1::Operation>]
1385
- attr_accessor :operations
1386
-
1387
- def initialize(**args)
1388
- update!(**args)
1389
- end
1390
-
1391
- # Update properties of this object
1392
- def update!(**args)
1393
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1394
- @operations = args[:operations] if args.key?(:operations)
1395
- end
1396
- end
1397
-
1398
- #
1399
- class MergeVariantsRequest
1400
- include Google::Apis::Core::Hashable
1401
-
1402
- # A mapping between info field keys and the InfoMergeOperations to
1403
- # be performed on them.
1404
- # Corresponds to the JSON property `infoMergeConfig`
1405
- # @return [Hash<String,String>]
1406
- attr_accessor :info_merge_config
1407
-
1408
- # The destination variant set.
1409
- # Corresponds to the JSON property `variantSetId`
1410
- # @return [String]
1411
- attr_accessor :variant_set_id
1412
-
1413
- # The variants to be merged with existing variants.
1414
- # Corresponds to the JSON property `variants`
1415
- # @return [Array<Google::Apis::GenomicsV1::Variant>]
1416
- attr_accessor :variants
1417
-
1418
- def initialize(**args)
1419
- update!(**args)
1420
- end
1421
-
1422
- # Update properties of this object
1423
- def update!(**args)
1424
- @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
1425
- @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
1426
- @variants = args[:variants] if args.key?(:variants)
1427
- end
1428
- end
1429
-
1430
- # This resource represents a long-running operation that is the result of a
1431
- # network API call.
1432
- class Operation
1433
- include Google::Apis::Core::Hashable
1434
-
1435
- # If the value is `false`, it means the operation is still in progress.
1436
- # If `true`, the operation is completed, and either `error` or `response` is
1437
- # available.
1438
- # Corresponds to the JSON property `done`
1439
- # @return [Boolean]
1440
- attr_accessor :done
1441
- alias_method :done?, :done
1442
-
1443
- # The `Status` type defines a logical error model that is suitable for different
1444
- # programming environments, including REST APIs and RPC APIs. It is used by
1445
- # [gRPC](https://github.com/grpc). The error model is designed to be:
1446
- # - Simple to use and understand for most users
1447
- # - Flexible enough to meet unexpected needs
1448
- # # Overview
1449
- # The `Status` message contains three pieces of data: error code, error message,
1450
- # and error details. The error code should be an enum value of
1451
- # google.rpc.Code, but it may accept additional error codes if needed. The
1452
- # error message should be a developer-facing English message that helps
1453
- # developers *understand* and *resolve* the error. If a localized user-facing
1454
- # error message is needed, put the localized message in the error details or
1455
- # localize it in the client. The optional error details may contain arbitrary
1456
- # information about the error. There is a predefined set of error detail types
1457
- # in the package `google.rpc` that can be used for common error conditions.
1458
- # # Language mapping
1459
- # The `Status` message is the logical representation of the error model, but it
1460
- # is not necessarily the actual wire format. When the `Status` message is
1461
- # exposed in different client libraries and different wire protocols, it can be
1462
- # mapped differently. For example, it will likely be mapped to some exceptions
1463
- # in Java, but more likely mapped to some error codes in C.
1464
- # # Other uses
1465
- # The error model and the `Status` message can be used in a variety of
1466
- # environments, either with or without APIs, to provide a
1467
- # consistent developer experience across different environments.
1468
- # Example uses of this error model include:
1469
- # - Partial errors. If a service needs to return partial errors to the client,
1470
- # it may embed the `Status` in the normal response to indicate the partial
1471
- # errors.
1472
- # - Workflow errors. A typical workflow has multiple steps. Each step may
1473
- # have a `Status` message for error reporting.
1474
- # - Batch operations. If a client uses batch request and batch response, the
1475
- # `Status` message should be used directly inside batch response, one for
1476
- # each error sub-response.
1477
- # - Asynchronous operations. If an API call embeds asynchronous operation
1478
- # results in its response, the status of those operations should be
1479
- # represented directly using the `Status` message.
1480
- # - Logging. If some API errors are stored in logs, the message `Status` could
1481
- # be used directly after any stripping needed for security/privacy reasons.
1482
- # Corresponds to the JSON property `error`
1483
- # @return [Google::Apis::GenomicsV1::Status]
1484
- attr_accessor :error
1485
-
1486
- # An OperationMetadata or Metadata object. This will always be returned with the
1487
- # Operation.
1488
- # Corresponds to the JSON property `metadata`
1489
- # @return [Hash<String,Object>]
1490
- attr_accessor :metadata
1491
-
1492
- # The server-assigned name, which is only unique within the same service that
1493
- # originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-
1494
- # qzoWAgEw`
1495
- # Corresponds to the JSON property `name`
1496
- # @return [String]
1497
- attr_accessor :name
1498
-
1499
- # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
1500
- # importing Variants, an ImportVariantsResponse is returned. For pipelines and
1501
- # exports, an Empty response is returned.
1502
- # Corresponds to the JSON property `response`
1503
- # @return [Hash<String,Object>]
1504
- attr_accessor :response
1505
-
1506
- def initialize(**args)
1507
- update!(**args)
1508
- end
1509
-
1510
- # Update properties of this object
1511
- def update!(**args)
1512
- @done = args[:done] if args.key?(:done)
1513
- @error = args[:error] if args.key?(:error)
1514
- @metadata = args[:metadata] if args.key?(:metadata)
1515
- @name = args[:name] if args.key?(:name)
1516
- @response = args[:response] if args.key?(:response)
1517
- end
1518
- end
1519
-
1520
- # An event that occurred during an Operation.
1521
- class OperationEvent
1522
- include Google::Apis::Core::Hashable
1523
-
1524
- # Required description of event.
1525
- # Corresponds to the JSON property `description`
1526
- # @return [String]
1527
- attr_accessor :description
1528
-
1529
- # Optional time of when event finished. An event can have a start time and no
1530
- # finish time. If an event has a finish time, there must be a start time.
1531
- # Corresponds to the JSON property `endTime`
1532
- # @return [String]
1533
- attr_accessor :end_time
1534
-
1535
- # Optional time of when event started.
1536
- # Corresponds to the JSON property `startTime`
1537
- # @return [String]
1538
- attr_accessor :start_time
1539
-
1540
- def initialize(**args)
1541
- update!(**args)
1542
- end
1543
-
1544
- # Update properties of this object
1545
- def update!(**args)
1546
- @description = args[:description] if args.key?(:description)
1547
- @end_time = args[:end_time] if args.key?(:end_time)
1548
- @start_time = args[:start_time] if args.key?(:start_time)
1549
- end
1550
- end
1551
-
1552
- # Metadata describing an Operation.
1553
- class OperationMetadata
1554
- include Google::Apis::Core::Hashable
1555
-
1556
- # This field is deprecated. Use `labels` instead. Optionally provided by the
1557
- # caller when submitting the request that creates the operation.
1558
- # Corresponds to the JSON property `clientId`
1559
- # @return [String]
1560
- attr_accessor :client_id
1561
-
1562
- # The time at which the job was submitted to the Genomics service.
1563
- # Corresponds to the JSON property `createTime`
1564
- # @return [String]
1565
- attr_accessor :create_time
1566
-
1567
- # The time at which the job stopped running.
1568
- # Corresponds to the JSON property `endTime`
1569
- # @return [String]
1570
- attr_accessor :end_time
1571
-
1572
- # Optional event messages that were generated during the job's execution.
1573
- # This also contains any warnings that were generated during import
1574
- # or export.
1575
- # Corresponds to the JSON property `events`
1576
- # @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
1577
- attr_accessor :events
1578
-
1579
- # Optionally provided by the caller when submitting the request that creates
1580
- # the operation.
1581
- # Corresponds to the JSON property `labels`
1582
- # @return [Hash<String,String>]
1583
- attr_accessor :labels
1584
-
1585
- # The Google Cloud Project in which the job is scoped.
1586
- # Corresponds to the JSON property `projectId`
1587
- # @return [String]
1588
- attr_accessor :project_id
1589
-
1590
- # The original request that started the operation. Note that this will be in
1591
- # current version of the API. If the operation was started with v1beta2 API
1592
- # and a GetOperation is performed on v1 API, a v1 request will be returned.
1593
- # Corresponds to the JSON property `request`
1594
- # @return [Hash<String,Object>]
1595
- attr_accessor :request
1596
-
1597
- # Runtime metadata on this Operation.
1598
- # Corresponds to the JSON property `runtimeMetadata`
1599
- # @return [Hash<String,Object>]
1600
- attr_accessor :runtime_metadata
1601
-
1602
- # The time at which the job began to run.
1603
- # Corresponds to the JSON property `startTime`
1604
- # @return [String]
1605
- attr_accessor :start_time
1606
-
1607
- def initialize(**args)
1608
- update!(**args)
1609
- end
1610
-
1611
- # Update properties of this object
1612
- def update!(**args)
1613
- @client_id = args[:client_id] if args.key?(:client_id)
1614
- @create_time = args[:create_time] if args.key?(:create_time)
1615
- @end_time = args[:end_time] if args.key?(:end_time)
1616
- @events = args[:events] if args.key?(:events)
1617
- @labels = args[:labels] if args.key?(:labels)
1618
- @project_id = args[:project_id] if args.key?(:project_id)
1619
- @request = args[:request] if args.key?(:request)
1620
- @runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
1621
- @start_time = args[:start_time] if args.key?(:start_time)
1622
- end
1623
- end
1624
-
1625
- # Defines an Identity and Access Management (IAM) policy. It is used to
1626
- # specify access control policies for Cloud Platform resources.
1627
- # A `Policy` consists of a list of `bindings`. A `binding` binds a list of
1628
- # `members` to a `role`, where the members can be user accounts, Google groups,
1629
- # Google domains, and service accounts. A `role` is a named list of permissions
1630
- # defined by IAM.
1631
- # **JSON Example**
1632
- # `
1633
- # "bindings": [
1634
- # `
1635
- # "role": "roles/owner",
1636
- # "members": [
1637
- # "user:mike@example.com",
1638
- # "group:admins@example.com",
1639
- # "domain:google.com",
1640
- # "serviceAccount:my-other-app@appspot.gserviceaccount.com"
1641
- # ]
1642
- # `,
1643
- # `
1644
- # "role": "roles/viewer",
1645
- # "members": ["user:sean@example.com"]
1646
- # `
1647
- # ]
1648
- # `
1649
- # **YAML Example**
1650
- # bindings:
1651
- # - members:
1652
- # - user:mike@example.com
1653
- # - group:admins@example.com
1654
- # - domain:google.com
1655
- # - serviceAccount:my-other-app@appspot.gserviceaccount.com
1656
- # role: roles/owner
1657
- # - members:
1658
- # - user:sean@example.com
1659
- # role: roles/viewer
1660
- # For a description of IAM and its features, see the
1661
- # [IAM developer's guide](https://cloud.google.com/iam/docs).
1662
- class Policy
1663
- include Google::Apis::Core::Hashable
1664
-
1665
- # Associates a list of `members` to a `role`.
1666
- # `bindings` with no members will result in an error.
1667
- # Corresponds to the JSON property `bindings`
1668
- # @return [Array<Google::Apis::GenomicsV1::Binding>]
1669
- attr_accessor :bindings
1670
-
1671
- # `etag` is used for optimistic concurrency control as a way to help
1672
- # prevent simultaneous updates of a policy from overwriting each other.
1673
- # It is strongly suggested that systems make use of the `etag` in the
1674
- # read-modify-write cycle to perform policy updates in order to avoid race
1675
- # conditions: An `etag` is returned in the response to `getIamPolicy`, and
1676
- # systems are expected to put that etag in the request to `setIamPolicy` to
1677
- # ensure that their change will be applied to the same version of the policy.
1678
- # If no `etag` is provided in the call to `setIamPolicy`, then the existing
1679
- # policy is overwritten blindly.
1680
- # Corresponds to the JSON property `etag`
1681
- # NOTE: Values are automatically base64 encoded/decoded in the client library.
1682
- # @return [String]
1683
- attr_accessor :etag
1684
-
1685
- # Deprecated.
1686
- # Corresponds to the JSON property `version`
1687
- # @return [Fixnum]
1688
- attr_accessor :version
1689
-
1690
- def initialize(**args)
1691
- update!(**args)
1692
- end
1693
-
1694
- # Update properties of this object
1695
- def update!(**args)
1696
- @bindings = args[:bindings] if args.key?(:bindings)
1697
- @etag = args[:etag] if args.key?(:etag)
1698
- @version = args[:version] if args.key?(:version)
1699
- end
1700
- end
1701
-
1702
- # An abstraction for referring to a genomic position, in relation to some
1703
- # already known reference. For now, represents a genomic position as a
1704
- # reference name, a base number on that reference (0-based), and a
1705
- # determination of forward or reverse strand.
1706
- class Position
1707
- include Google::Apis::Core::Hashable
1708
-
1709
- # The 0-based offset from the start of the forward strand for that reference.
1710
- # Corresponds to the JSON property `position`
1711
- # @return [Fixnum]
1712
- attr_accessor :position
1713
-
1714
- # The name of the reference in whatever reference set is being used.
1715
- # Corresponds to the JSON property `referenceName`
1716
- # @return [String]
1717
- attr_accessor :reference_name
1718
-
1719
- # Whether this position is on the reverse strand, as opposed to the forward
1720
- # strand.
1721
- # Corresponds to the JSON property `reverseStrand`
1722
- # @return [Boolean]
1723
- attr_accessor :reverse_strand
1724
- alias_method :reverse_strand?, :reverse_strand
1725
-
1726
- def initialize(**args)
1727
- update!(**args)
1728
- end
1729
-
1730
- # Update properties of this object
1731
- def update!(**args)
1732
- @position = args[:position] if args.key?(:position)
1733
- @reference_name = args[:reference_name] if args.key?(:reference_name)
1734
- @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
1735
- end
1736
- end
1737
-
1738
- #
1739
- class Program
1740
- include Google::Apis::Core::Hashable
1741
-
1742
- # The command line used to run this program.
1743
- # Corresponds to the JSON property `commandLine`
1744
- # @return [String]
1745
- attr_accessor :command_line
1746
-
1747
- # The user specified locally unique ID of the program. Used along with
1748
- # `prevProgramId` to define an ordering between programs.
1749
- # Corresponds to the JSON property `id`
1750
- # @return [String]
1751
- attr_accessor :id
1752
-
1753
- # The display name of the program. This is typically the colloquial name of
1754
- # the tool used, for example 'bwa' or 'picard'.
1755
- # Corresponds to the JSON property `name`
1756
- # @return [String]
1757
- attr_accessor :name
1758
-
1759
- # The ID of the program run before this one.
1760
- # Corresponds to the JSON property `prevProgramId`
1761
- # @return [String]
1762
- attr_accessor :prev_program_id
1763
-
1764
- # The version of the program run.
1765
- # Corresponds to the JSON property `version`
1766
- # @return [String]
1767
- attr_accessor :version
1768
-
1769
- def initialize(**args)
1770
- update!(**args)
1771
- end
1772
-
1773
- # Update properties of this object
1774
- def update!(**args)
1775
- @command_line = args[:command_line] if args.key?(:command_line)
1776
- @id = args[:id] if args.key?(:id)
1777
- @name = args[:name] if args.key?(:name)
1778
- @prev_program_id = args[:prev_program_id] if args.key?(:prev_program_id)
1779
- @version = args[:version] if args.key?(:version)
1780
- end
1781
- end
1782
-
1783
- # An event generated when the worker starts pulling an image.
1784
- class PullStartedEvent
1785
- include Google::Apis::Core::Hashable
1786
-
1787
- # The URI of the image that was pulled.
1788
- # Corresponds to the JSON property `imageUri`
1789
- # @return [String]
1790
- attr_accessor :image_uri
1791
-
1792
- def initialize(**args)
1793
- update!(**args)
1794
- end
1795
-
1796
- # Update properties of this object
1797
- def update!(**args)
1798
- @image_uri = args[:image_uri] if args.key?(:image_uri)
1799
- end
1800
- end
1801
-
1802
- # An event generated when the worker stops pulling an image.
1803
- class PullStoppedEvent
1804
- include Google::Apis::Core::Hashable
1805
-
1806
- # The URI of the image that was pulled.
1807
- # Corresponds to the JSON property `imageUri`
1808
- # @return [String]
1809
- attr_accessor :image_uri
1810
-
1811
- def initialize(**args)
1812
- update!(**args)
1813
- end
1814
-
1815
- # Update properties of this object
1816
- def update!(**args)
1817
- @image_uri = args[:image_uri] if args.key?(:image_uri)
1818
- end
1819
- end
1820
-
1821
- # A 0-based half-open genomic coordinate range for search requests.
1822
- class Range
1823
- include Google::Apis::Core::Hashable
1824
-
1825
- # The end position of the range on the reference, 0-based exclusive.
1826
- # Corresponds to the JSON property `end`
1827
- # @return [Fixnum]
1828
- attr_accessor :end
1829
-
1830
- # The reference sequence name, for example `chr1`,
1831
- # `1`, or `chrX`.
1832
- # Corresponds to the JSON property `referenceName`
1833
- # @return [String]
1834
- attr_accessor :reference_name
1835
-
1836
- # The start position of the range on the reference, 0-based inclusive.
1837
- # Corresponds to the JSON property `start`
1838
- # @return [Fixnum]
1839
- attr_accessor :start
1840
-
1841
- def initialize(**args)
1842
- update!(**args)
1843
- end
1844
-
1845
- # Update properties of this object
1846
- def update!(**args)
1847
- @end = args[:end] if args.key?(:end)
1848
- @reference_name = args[:reference_name] if args.key?(:reference_name)
1849
- @start = args[:start] if args.key?(:start)
1850
- end
1851
- end
1852
-
1853
- # A read alignment describes a linear alignment of a string of DNA to a
1854
- # reference sequence, in addition to metadata
1855
- # about the fragment (the molecule of DNA sequenced) and the read (the bases
1856
- # which were read by the sequencer). A read is equivalent to a line in a SAM
1857
- # file. A read belongs to exactly one read group and exactly one
1858
- # read group set.
1859
- # ### Reverse-stranded reads
1860
- # Mapped reads (reads having a non-null `alignment`) can be aligned to either
1861
- # the forward or the reverse strand of their associated reference. Strandedness
1862
- # of a mapped read is encoded by `alignment.position.reverseStrand`.
1863
- # If we consider the reference to be a forward-stranded coordinate space of
1864
- # `[0, reference.length)` with `0` as the left-most position and
1865
- # `reference.length` as the right-most position, reads are always aligned left
1866
- # to right. That is, `alignment.position.position` always refers to the
1867
- # left-most reference coordinate and `alignment.cigar` describes the alignment
1868
- # of this read to the reference from left to right. All per-base fields such as
1869
- # `alignedSequence` and `alignedQuality` share this same left-to-right
1870
- # orientation; this is true of reads which are aligned to either strand. For
1871
- # reverse-stranded reads, this means that `alignedSequence` is the reverse
1872
- # complement of the bases that were originally reported by the sequencing
1873
- # machine.
1874
- # ### Generating a reference-aligned sequence string
1875
- # When interacting with mapped reads, it's often useful to produce a string
1876
- # representing the local alignment of the read to reference. The following
1877
- # pseudocode demonstrates one way of doing this:
1878
- # out = ""
1879
- # offset = 0
1880
- # for c in read.alignment.cigar `
1881
- # switch c.operation `
1882
- # case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
1883
- # out += read.alignedSequence[offset:offset+c.operationLength]
1884
- # offset += c.operationLength
1885
- # break
1886
- # case "CLIP_SOFT", "INSERT":
1887
- # offset += c.operationLength
1888
- # break
1889
- # case "PAD":
1890
- # out += repeat("*", c.operationLength)
1891
- # break
1892
- # case "DELETE":
1893
- # out += repeat("-", c.operationLength)
1894
- # break
1895
- # case "SKIP":
1896
- # out += repeat(" ", c.operationLength)
1897
- # break
1898
- # case "CLIP_HARD":
1899
- # break
1900
- # `
1901
- # `
1902
- # return out
1903
- # ### Converting to SAM's CIGAR string
1904
- # The following pseudocode generates a SAM CIGAR string from the
1905
- # `cigar` field. Note that this is a lossy conversion
1906
- # (`cigar.referenceSequence` is lost).
1907
- # cigarMap = `
1908
- # "ALIGNMENT_MATCH": "M",
1909
- # "INSERT": "I",
1910
- # "DELETE": "D",
1911
- # "SKIP": "N",
1912
- # "CLIP_SOFT": "S",
1913
- # "CLIP_HARD": "H",
1914
- # "PAD": "P",
1915
- # "SEQUENCE_MATCH": "=",
1916
- # "SEQUENCE_MISMATCH": "X",
1917
- # `
1918
- # cigarStr = ""
1919
- # for c in read.alignment.cigar `
1920
- # cigarStr += c.operationLength + cigarMap[c.operation]
1921
- # `
1922
- # return cigarStr
1923
- class Read
1924
- include Google::Apis::Core::Hashable
1925
-
1926
- # The quality of the read sequence contained in this alignment record
1927
- # (equivalent to QUAL in SAM).
1928
- # `alignedSequence` and `alignedQuality` may be shorter than the full read
1929
- # sequence and quality. This will occur if the alignment is part of a
1930
- # chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
1931
- # for this read will begin/end with a hard clip operator that will indicate
1932
- # the length of the excised sequence.
1933
- # Corresponds to the JSON property `alignedQuality`
1934
- # @return [Array<Fixnum>]
1935
- attr_accessor :aligned_quality
1936
-
1937
- # The bases of the read sequence contained in this alignment record,
1938
- # **without CIGAR operations applied** (equivalent to SEQ in SAM).
1939
- # `alignedSequence` and `alignedQuality` may be
1940
- # shorter than the full read sequence and quality. This will occur if the
1941
- # alignment is part of a chimeric alignment, or if the read was trimmed. When
1942
- # this occurs, the CIGAR for this read will begin/end with a hard clip
1943
- # operator that will indicate the length of the excised sequence.
1944
- # Corresponds to the JSON property `alignedSequence`
1945
- # @return [String]
1946
- attr_accessor :aligned_sequence
1947
-
1948
- # A linear alignment can be represented by one CIGAR string. Describes the
1949
- # mapped position and local alignment of the read to the reference.
1950
- # Corresponds to the JSON property `alignment`
1951
- # @return [Google::Apis::GenomicsV1::LinearAlignment]
1952
- attr_accessor :alignment
1953
-
1954
- # The fragment is a PCR or optical duplicate (SAM flag 0x400).
1955
- # Corresponds to the JSON property `duplicateFragment`
1956
- # @return [Boolean]
1957
- attr_accessor :duplicate_fragment
1958
- alias_method :duplicate_fragment?, :duplicate_fragment
1959
-
1960
- # Whether this read did not pass filters, such as platform or vendor quality
1961
- # controls (SAM flag 0x200).
1962
- # Corresponds to the JSON property `failedVendorQualityChecks`
1963
- # @return [Boolean]
1964
- attr_accessor :failed_vendor_quality_checks
1965
- alias_method :failed_vendor_quality_checks?, :failed_vendor_quality_checks
1966
-
1967
- # The observed length of the fragment, equivalent to TLEN in SAM.
1968
- # Corresponds to the JSON property `fragmentLength`
1969
- # @return [Fixnum]
1970
- attr_accessor :fragment_length
1971
-
1972
- # The fragment name. Equivalent to QNAME (query template name) in SAM.
1973
- # Corresponds to the JSON property `fragmentName`
1974
- # @return [String]
1975
- attr_accessor :fragment_name
1976
-
1977
- # The server-generated read ID, unique across all reads. This is different
1978
- # from the `fragmentName`.
1979
- # Corresponds to the JSON property `id`
1980
- # @return [String]
1981
- attr_accessor :id
1982
-
1983
- # A map of additional read alignment information. This must be of the form
1984
- # map<string, string[]> (string key mapping to a list of string values).
1985
- # Corresponds to the JSON property `info`
1986
- # @return [Hash<String,Array<Object>>]
1987
- attr_accessor :info
1988
-
1989
- # An abstraction for referring to a genomic position, in relation to some
1990
- # already known reference. For now, represents a genomic position as a
1991
- # reference name, a base number on that reference (0-based), and a
1992
- # determination of forward or reverse strand.
1993
- # Corresponds to the JSON property `nextMatePosition`
1994
- # @return [Google::Apis::GenomicsV1::Position]
1995
- attr_accessor :next_mate_position
1996
-
1997
- # The number of reads in the fragment (extension to SAM flag 0x1).
1998
- # Corresponds to the JSON property `numberReads`
1999
- # @return [Fixnum]
2000
- attr_accessor :number_reads
2001
-
2002
- # The orientation and the distance between reads from the fragment are
2003
- # consistent with the sequencing protocol (SAM flag 0x2).
2004
- # Corresponds to the JSON property `properPlacement`
2005
- # @return [Boolean]
2006
- attr_accessor :proper_placement
2007
- alias_method :proper_placement?, :proper_placement
2008
-
2009
- # The ID of the read group this read belongs to. A read belongs to exactly
2010
- # one read group. This is a server-generated ID which is distinct from SAM's
2011
- # RG tag (for that value, see
2012
- # ReadGroup.name).
2013
- # Corresponds to the JSON property `readGroupId`
2014
- # @return [String]
2015
- attr_accessor :read_group_id
2016
-
2017
- # The ID of the read group set this read belongs to. A read belongs to
2018
- # exactly one read group set.
2019
- # Corresponds to the JSON property `readGroupSetId`
2020
- # @return [String]
2021
- attr_accessor :read_group_set_id
2022
-
2023
- # The read number in sequencing. 0-based and less than numberReads. This
2024
- # field replaces SAM flag 0x40 and 0x80.
2025
- # Corresponds to the JSON property `readNumber`
2026
- # @return [Fixnum]
2027
- attr_accessor :read_number
2028
-
2029
- # Whether this alignment is secondary. Equivalent to SAM flag 0x100.
2030
- # A secondary alignment represents an alternative to the primary alignment
2031
- # for this read. Aligners may return secondary alignments if a read can map
2032
- # ambiguously to multiple coordinates in the genome. By convention, each read
2033
- # has one and only one alignment where both `secondaryAlignment`
2034
- # and `supplementaryAlignment` are false.
2035
- # Corresponds to the JSON property `secondaryAlignment`
2036
- # @return [Boolean]
2037
- attr_accessor :secondary_alignment
2038
- alias_method :secondary_alignment?, :secondary_alignment
2039
-
2040
- # Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
2041
- # Supplementary alignments are used in the representation of a chimeric
2042
- # alignment. In a chimeric alignment, a read is split into multiple
2043
- # linear alignments that map to different reference contigs. The first
2044
- # linear alignment in the read will be designated as the representative
2045
- # alignment; the remaining linear alignments will be designated as
2046
- # supplementary alignments. These alignments may have different mapping
2047
- # quality scores. In each linear alignment in a chimeric alignment, the read
2048
- # will be hard clipped. The `alignedSequence` and
2049
- # `alignedQuality` fields in the alignment record will only
2050
- # represent the bases for its respective linear alignment.
2051
- # Corresponds to the JSON property `supplementaryAlignment`
2052
- # @return [Boolean]
2053
- attr_accessor :supplementary_alignment
2054
- alias_method :supplementary_alignment?, :supplementary_alignment
2055
-
2056
- def initialize(**args)
2057
- update!(**args)
2058
- end
2059
-
2060
- # Update properties of this object
2061
- def update!(**args)
2062
- @aligned_quality = args[:aligned_quality] if args.key?(:aligned_quality)
2063
- @aligned_sequence = args[:aligned_sequence] if args.key?(:aligned_sequence)
2064
- @alignment = args[:alignment] if args.key?(:alignment)
2065
- @duplicate_fragment = args[:duplicate_fragment] if args.key?(:duplicate_fragment)
2066
- @failed_vendor_quality_checks = args[:failed_vendor_quality_checks] if args.key?(:failed_vendor_quality_checks)
2067
- @fragment_length = args[:fragment_length] if args.key?(:fragment_length)
2068
- @fragment_name = args[:fragment_name] if args.key?(:fragment_name)
2069
- @id = args[:id] if args.key?(:id)
2070
- @info = args[:info] if args.key?(:info)
2071
- @next_mate_position = args[:next_mate_position] if args.key?(:next_mate_position)
2072
- @number_reads = args[:number_reads] if args.key?(:number_reads)
2073
- @proper_placement = args[:proper_placement] if args.key?(:proper_placement)
2074
- @read_group_id = args[:read_group_id] if args.key?(:read_group_id)
2075
- @read_group_set_id = args[:read_group_set_id] if args.key?(:read_group_set_id)
2076
- @read_number = args[:read_number] if args.key?(:read_number)
2077
- @secondary_alignment = args[:secondary_alignment] if args.key?(:secondary_alignment)
2078
- @supplementary_alignment = args[:supplementary_alignment] if args.key?(:supplementary_alignment)
2079
- end
2080
- end
2081
-
2082
- # A read group is all the data that's processed the same way by the sequencer.
2083
- class ReadGroup
2084
- include Google::Apis::Core::Hashable
2085
-
2086
- # The dataset to which this read group belongs.
2087
- # Corresponds to the JSON property `datasetId`
2088
- # @return [String]
2089
- attr_accessor :dataset_id
2090
-
2091
- # A free-form text description of this read group.
2092
- # Corresponds to the JSON property `description`
2093
- # @return [String]
2094
- attr_accessor :description
2095
-
2096
- # The experiment used to generate this read group.
2097
- # Corresponds to the JSON property `experiment`
2098
- # @return [Google::Apis::GenomicsV1::Experiment]
2099
- attr_accessor :experiment
2100
-
2101
- # The server-generated read group ID, unique for all read groups.
2102
- # Note: This is different than the @RG ID field in the SAM spec. For that
2103
- # value, see name.
2104
- # Corresponds to the JSON property `id`
2105
- # @return [String]
2106
- attr_accessor :id
2107
-
2108
- # A map of additional read group information. This must be of the form
2109
- # map<string, string[]> (string key mapping to a list of string values).
2110
- # Corresponds to the JSON property `info`
2111
- # @return [Hash<String,Array<Object>>]
2112
- attr_accessor :info
2113
-
2114
- # The read group name. This corresponds to the @RG ID field in the SAM spec.
2115
- # Corresponds to the JSON property `name`
2116
- # @return [String]
2117
- attr_accessor :name
2118
-
2119
- # The predicted insert size of this read group. The insert size is the length
2120
- # the sequenced DNA fragment from end-to-end, not including the adapters.
2121
- # Corresponds to the JSON property `predictedInsertSize`
2122
- # @return [Fixnum]
2123
- attr_accessor :predicted_insert_size
2124
-
2125
- # The programs used to generate this read group. Programs are always
2126
- # identical for all read groups within a read group set. For this reason,
2127
- # only the first read group in a returned set will have this field
2128
- # populated.
2129
- # Corresponds to the JSON property `programs`
2130
- # @return [Array<Google::Apis::GenomicsV1::Program>]
2131
- attr_accessor :programs
2132
-
2133
- # The reference set the reads in this read group are aligned to.
2134
- # Corresponds to the JSON property `referenceSetId`
2135
- # @return [String]
2136
- attr_accessor :reference_set_id
2137
-
2138
- # A client-supplied sample identifier for the reads in this read group.
2139
- # Corresponds to the JSON property `sampleId`
2140
- # @return [String]
2141
- attr_accessor :sample_id
2142
-
2143
- def initialize(**args)
2144
- update!(**args)
2145
- end
2146
-
2147
- # Update properties of this object
2148
- def update!(**args)
2149
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2150
- @description = args[:description] if args.key?(:description)
2151
- @experiment = args[:experiment] if args.key?(:experiment)
2152
- @id = args[:id] if args.key?(:id)
2153
- @info = args[:info] if args.key?(:info)
2154
- @name = args[:name] if args.key?(:name)
2155
- @predicted_insert_size = args[:predicted_insert_size] if args.key?(:predicted_insert_size)
2156
- @programs = args[:programs] if args.key?(:programs)
2157
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2158
- @sample_id = args[:sample_id] if args.key?(:sample_id)
2159
- end
2160
- end
2161
-
2162
- # A read group set is a logical collection of read groups, which are
2163
- # collections of reads produced by a sequencer. A read group set typically
2164
- # models reads corresponding to one sample, sequenced one way, and aligned one
2165
- # way.
2166
- # * A read group set belongs to one dataset.
2167
- # * A read group belongs to one read group set.
2168
- # * A read belongs to one read group.
2169
- class ReadGroupSet
2170
- include Google::Apis::Core::Hashable
2171
-
2172
- # The dataset to which this read group set belongs.
2173
- # Corresponds to the JSON property `datasetId`
2174
- # @return [String]
2175
- attr_accessor :dataset_id
2176
-
2177
- # The filename of the original source file for this read group set, if any.
2178
- # Corresponds to the JSON property `filename`
2179
- # @return [String]
2180
- attr_accessor :filename
2181
-
2182
- # The server-generated read group set ID, unique for all read group sets.
2183
- # Corresponds to the JSON property `id`
2184
- # @return [String]
2185
- attr_accessor :id
2186
-
2187
- # A map of additional read group set information.
2188
- # Corresponds to the JSON property `info`
2189
- # @return [Hash<String,Array<Object>>]
2190
- attr_accessor :info
2191
-
2192
- # The read group set name. By default this will be initialized to the sample
2193
- # name of the sequenced data contained in this set.
2194
- # Corresponds to the JSON property `name`
2195
- # @return [String]
2196
- attr_accessor :name
2197
-
2198
- # The read groups in this set. There are typically 1-10 read groups in a read
2199
- # group set.
2200
- # Corresponds to the JSON property `readGroups`
2201
- # @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
2202
- attr_accessor :read_groups
2203
-
2204
- # The reference set to which the reads in this read group set are aligned.
2205
- # Corresponds to the JSON property `referenceSetId`
2206
- # @return [String]
2207
- attr_accessor :reference_set_id
2208
-
2209
- def initialize(**args)
2210
- update!(**args)
2211
- end
2212
-
2213
- # Update properties of this object
2214
- def update!(**args)
2215
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2216
- @filename = args[:filename] if args.key?(:filename)
2217
- @id = args[:id] if args.key?(:id)
2218
- @info = args[:info] if args.key?(:info)
2219
- @name = args[:name] if args.key?(:name)
2220
- @read_groups = args[:read_groups] if args.key?(:read_groups)
2221
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2222
- end
2223
- end
2224
-
2225
- # A reference is a canonical assembled DNA sequence, intended to act as a
2226
- # reference coordinate space for other genomic annotations. A single reference
2227
- # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
2228
- # reference belongs to one or more reference sets.
2229
- class Reference
2230
- include Google::Apis::Core::Hashable
2231
-
2232
- # The server-generated reference ID, unique across all references.
2233
- # Corresponds to the JSON property `id`
2234
- # @return [String]
2235
- attr_accessor :id
2236
-
2237
- # The length of this reference's sequence.
2238
- # Corresponds to the JSON property `length`
2239
- # @return [Fixnum]
2240
- attr_accessor :length
2241
-
2242
- # MD5 of the upper-case sequence excluding all whitespace characters (this
2243
- # is equivalent to SQ:M5 in SAM). This value is represented in lower case
2244
- # hexadecimal format.
2245
- # Corresponds to the JSON property `md5checksum`
2246
- # @return [String]
2247
- attr_accessor :md5checksum
2248
-
2249
- # The name of this reference, for example `22`.
2250
- # Corresponds to the JSON property `name`
2251
- # @return [String]
2252
- attr_accessor :name
2253
-
2254
- # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
2255
- # Corresponds to the JSON property `ncbiTaxonId`
2256
- # @return [Fixnum]
2257
- attr_accessor :ncbi_taxon_id
2258
-
2259
- # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
2260
- # with a version number, for example `GCF_000001405.26`.
2261
- # Corresponds to the JSON property `sourceAccessions`
2262
- # @return [Array<String>]
2263
- attr_accessor :source_accessions
2264
-
2265
- # The URI from which the sequence was obtained. Typically specifies a FASTA
2266
- # format file.
2267
- # Corresponds to the JSON property `sourceUri`
2268
- # @return [String]
2269
- attr_accessor :source_uri
2270
-
2271
- def initialize(**args)
2272
- update!(**args)
2273
- end
2274
-
2275
- # Update properties of this object
2276
- def update!(**args)
2277
- @id = args[:id] if args.key?(:id)
2278
- @length = args[:length] if args.key?(:length)
2279
- @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
2280
- @name = args[:name] if args.key?(:name)
2281
- @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
2282
- @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
2283
- @source_uri = args[:source_uri] if args.key?(:source_uri)
2284
- end
2285
- end
2286
-
2287
- # ReferenceBound records an upper bound for the starting coordinate of
2288
- # variants in a particular reference.
2289
- class ReferenceBound
2290
- include Google::Apis::Core::Hashable
2291
-
2292
- # The name of the reference associated with this reference bound.
2293
- # Corresponds to the JSON property `referenceName`
2294
- # @return [String]
2295
- attr_accessor :reference_name
2296
-
2297
- # An upper bound (inclusive) on the starting coordinate of any
2298
- # variant in the reference sequence.
2299
- # Corresponds to the JSON property `upperBound`
2300
- # @return [Fixnum]
2301
- attr_accessor :upper_bound
2302
-
2303
- def initialize(**args)
2304
- update!(**args)
2305
- end
2306
-
2307
- # Update properties of this object
2308
- def update!(**args)
2309
- @reference_name = args[:reference_name] if args.key?(:reference_name)
2310
- @upper_bound = args[:upper_bound] if args.key?(:upper_bound)
2311
- end
2312
- end
2313
-
2314
- # A reference set is a set of references which typically comprise a reference
2315
- # assembly for a species, such as `GRCh38` which is representative
2316
- # of the human genome. A reference set defines a common coordinate space for
2317
- # comparing reference-aligned experimental data. A reference set contains 1 or
2318
- # more references.
2319
- class ReferenceSet
2320
- include Google::Apis::Core::Hashable
2321
-
2322
- # Public id of this reference set, such as `GRCh37`.
2323
- # Corresponds to the JSON property `assemblyId`
2324
- # @return [String]
2325
- attr_accessor :assembly_id
2326
-
2327
- # Free text description of this reference set.
2328
- # Corresponds to the JSON property `description`
2329
- # @return [String]
2330
- attr_accessor :description
2331
-
2332
- # The server-generated reference set ID, unique across all reference sets.
2333
- # Corresponds to the JSON property `id`
2334
- # @return [String]
2335
- attr_accessor :id
2336
-
2337
- # Order-independent MD5 checksum which identifies this reference set. The
2338
- # checksum is computed by sorting all lower case hexidecimal string
2339
- # `reference.md5checksum` (for all reference in this set) in
2340
- # ascending lexicographic order, concatenating, and taking the MD5 of that
2341
- # value. The resulting value is represented in lower case hexadecimal format.
2342
- # Corresponds to the JSON property `md5checksum`
2343
- # @return [String]
2344
- attr_accessor :md5checksum
2345
-
2346
- # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
2347
- # indicating the species which this reference set is intended to model. Note
2348
- # that contained references may specify a different `ncbiTaxonId`, as
2349
- # assemblies may contain reference sequences which do not belong to the
2350
- # modeled species, for example EBV in a human reference genome.
2351
- # Corresponds to the JSON property `ncbiTaxonId`
2352
- # @return [Fixnum]
2353
- attr_accessor :ncbi_taxon_id
2354
-
2355
- # The IDs of the reference objects that are part of this set.
2356
- # `Reference.md5checksum` must be unique within this set.
2357
- # Corresponds to the JSON property `referenceIds`
2358
- # @return [Array<String>]
2359
- attr_accessor :reference_ids
2360
-
2361
- # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
2362
- # with a version number, for example `NC_000001.11`.
2363
- # Corresponds to the JSON property `sourceAccessions`
2364
- # @return [Array<String>]
2365
- attr_accessor :source_accessions
2366
-
2367
- # The URI from which the references were obtained.
2368
- # Corresponds to the JSON property `sourceUri`
2369
- # @return [String]
2370
- attr_accessor :source_uri
2371
-
2372
- def initialize(**args)
2373
- update!(**args)
2374
- end
2375
-
2376
- # Update properties of this object
2377
- def update!(**args)
2378
- @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
2379
- @description = args[:description] if args.key?(:description)
2380
- @id = args[:id] if args.key?(:id)
2381
- @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
2382
- @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
2383
- @reference_ids = args[:reference_ids] if args.key?(:reference_ids)
2384
- @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
2385
- @source_uri = args[:source_uri] if args.key?(:source_uri)
2386
- end
2387
- end
2388
-
2389
- # The response to the RunPipeline method, returned in the operation's result
2390
- # field on success.
2391
- class RunPipelineResponse
2392
- include Google::Apis::Core::Hashable
2393
-
2394
- def initialize(**args)
2395
- update!(**args)
2396
- end
2397
-
2398
- # Update properties of this object
2399
- def update!(**args)
2400
- end
2401
- end
2402
-
2403
- # Runtime metadata that will be populated in the
2404
- # runtimeMetadata
2405
- # field of the Operation associated with a RunPipeline execution.
2406
- class RuntimeMetadata
2407
- include Google::Apis::Core::Hashable
2408
-
2409
- # Describes a Compute Engine resource that is being managed by a running
2410
- # pipeline.
2411
- # Corresponds to the JSON property `computeEngine`
2412
- # @return [Google::Apis::GenomicsV1::ComputeEngine]
2413
- attr_accessor :compute_engine
2414
-
2415
- def initialize(**args)
2416
- update!(**args)
2417
- end
2418
-
2419
- # Update properties of this object
2420
- def update!(**args)
2421
- @compute_engine = args[:compute_engine] if args.key?(:compute_engine)
2422
- end
2423
- end
2424
-
2425
- #
2426
- class SearchAnnotationSetsRequest
2427
- include Google::Apis::Core::Hashable
2428
-
2429
- # Required. The dataset IDs to search within. Caller must have `READ` access
2430
- # to these datasets.
2431
- # Corresponds to the JSON property `datasetIds`
2432
- # @return [Array<String>]
2433
- attr_accessor :dataset_ids
2434
-
2435
- # Only return annotations sets for which a substring of the name matches this
2436
- # string (case insensitive).
2437
- # Corresponds to the JSON property `name`
2438
- # @return [String]
2439
- attr_accessor :name
2440
-
2441
- # The maximum number of results to return in a single page. If unspecified,
2442
- # defaults to 128. The maximum value is 1024.
2443
- # Corresponds to the JSON property `pageSize`
2444
- # @return [Fixnum]
2445
- attr_accessor :page_size
2446
-
2447
- # The continuation token, which is used to page through large result sets.
2448
- # To get the next page of results, set this parameter to the value of
2449
- # `nextPageToken` from the previous response.
2450
- # Corresponds to the JSON property `pageToken`
2451
- # @return [String]
2452
- attr_accessor :page_token
2453
-
2454
- # If specified, only annotation sets associated with the given reference set
2455
- # are returned.
2456
- # Corresponds to the JSON property `referenceSetId`
2457
- # @return [String]
2458
- attr_accessor :reference_set_id
2459
-
2460
- # If specified, only annotation sets that have any of these types are
2461
- # returned.
2462
- # Corresponds to the JSON property `types`
2463
- # @return [Array<String>]
2464
- attr_accessor :types
2465
-
2466
- def initialize(**args)
2467
- update!(**args)
2468
- end
2469
-
2470
- # Update properties of this object
2471
- def update!(**args)
2472
- @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
2473
- @name = args[:name] if args.key?(:name)
2474
- @page_size = args[:page_size] if args.key?(:page_size)
2475
- @page_token = args[:page_token] if args.key?(:page_token)
2476
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2477
- @types = args[:types] if args.key?(:types)
2478
- end
2479
- end
2480
-
2481
- #
2482
- class SearchAnnotationSetsResponse
2483
- include Google::Apis::Core::Hashable
2484
-
2485
- # The matching annotation sets.
2486
- # Corresponds to the JSON property `annotationSets`
2487
- # @return [Array<Google::Apis::GenomicsV1::AnnotationSet>]
2488
- attr_accessor :annotation_sets
2489
-
2490
- # The continuation token, which is used to page through large result sets.
2491
- # Provide this value in a subsequent request to return the next page of
2492
- # results. This field will be empty if there aren't any additional results.
2493
- # Corresponds to the JSON property `nextPageToken`
2494
- # @return [String]
2495
- attr_accessor :next_page_token
2496
-
2497
- def initialize(**args)
2498
- update!(**args)
2499
- end
2500
-
2501
- # Update properties of this object
2502
- def update!(**args)
2503
- @annotation_sets = args[:annotation_sets] if args.key?(:annotation_sets)
2504
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2505
- end
2506
- end
2507
-
2508
- #
2509
- class SearchAnnotationsRequest
2510
- include Google::Apis::Core::Hashable
2511
-
2512
- # Required. The annotation sets to search within. The caller must have
2513
- # `READ` access to these annotation sets.
2514
- # All queried annotation sets must have the same type.
2515
- # Corresponds to the JSON property `annotationSetIds`
2516
- # @return [Array<String>]
2517
- attr_accessor :annotation_set_ids
2518
-
2519
- # The end position of the range on the reference, 0-based exclusive. If
2520
- # referenceId or
2521
- # referenceName
2522
- # must be specified, Defaults to the length of the reference.
2523
- # Corresponds to the JSON property `end`
2524
- # @return [Fixnum]
2525
- attr_accessor :end
2526
-
2527
- # The maximum number of results to return in a single page. If unspecified,
2528
- # defaults to 256. The maximum value is 2048.
2529
- # Corresponds to the JSON property `pageSize`
2530
- # @return [Fixnum]
2531
- attr_accessor :page_size
2532
-
2533
- # The continuation token, which is used to page through large result sets.
2534
- # To get the next page of results, set this parameter to the value of
2535
- # `nextPageToken` from the previous response.
2536
- # Corresponds to the JSON property `pageToken`
2537
- # @return [String]
2538
- attr_accessor :page_token
2539
-
2540
- # The ID of the reference to query.
2541
- # Corresponds to the JSON property `referenceId`
2542
- # @return [String]
2543
- attr_accessor :reference_id
2544
-
2545
- # The name of the reference to query, within the reference set associated
2546
- # with this query.
2547
- # Corresponds to the JSON property `referenceName`
2548
- # @return [String]
2549
- attr_accessor :reference_name
2550
-
2551
- # The start position of the range on the reference, 0-based inclusive. If
2552
- # specified,
2553
- # referenceId or
2554
- # referenceName
2555
- # must be specified. Defaults to 0.
2556
- # Corresponds to the JSON property `start`
2557
- # @return [Fixnum]
2558
- attr_accessor :start
2559
-
2560
- def initialize(**args)
2561
- update!(**args)
2562
- end
2563
-
2564
- # Update properties of this object
2565
- def update!(**args)
2566
- @annotation_set_ids = args[:annotation_set_ids] if args.key?(:annotation_set_ids)
2567
- @end = args[:end] if args.key?(:end)
2568
- @page_size = args[:page_size] if args.key?(:page_size)
2569
- @page_token = args[:page_token] if args.key?(:page_token)
2570
- @reference_id = args[:reference_id] if args.key?(:reference_id)
2571
- @reference_name = args[:reference_name] if args.key?(:reference_name)
2572
- @start = args[:start] if args.key?(:start)
2573
- end
2574
- end
2575
-
2576
- #
2577
- class SearchAnnotationsResponse
2578
- include Google::Apis::Core::Hashable
2579
-
2580
- # The matching annotations.
2581
- # Corresponds to the JSON property `annotations`
2582
- # @return [Array<Google::Apis::GenomicsV1::Annotation>]
2583
- attr_accessor :annotations
2584
-
2585
- # The continuation token, which is used to page through large result sets.
2586
- # Provide this value in a subsequent request to return the next page of
2587
- # results. This field will be empty if there aren't any additional results.
2588
- # Corresponds to the JSON property `nextPageToken`
2589
- # @return [String]
2590
- attr_accessor :next_page_token
2591
-
2592
- def initialize(**args)
2593
- update!(**args)
2594
- end
2595
-
2596
- # Update properties of this object
2597
- def update!(**args)
2598
- @annotations = args[:annotations] if args.key?(:annotations)
2599
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2600
- end
2601
- end
2602
-
2603
- # The call set search request.
2604
- class SearchCallSetsRequest
2605
- include Google::Apis::Core::Hashable
2606
-
2607
- # Only return call sets for which a substring of the name matches this
2608
- # string.
2609
- # Corresponds to the JSON property `name`
2610
- # @return [String]
2611
- attr_accessor :name
2612
-
2613
- # The maximum number of results to return in a single page. If unspecified,
2614
- # defaults to 1024.
2615
- # Corresponds to the JSON property `pageSize`
2616
- # @return [Fixnum]
2617
- attr_accessor :page_size
2618
-
2619
- # The continuation token, which is used to page through large result sets.
2620
- # To get the next page of results, set this parameter to the value of
2621
- # `nextPageToken` from the previous response.
2622
- # Corresponds to the JSON property `pageToken`
2623
- # @return [String]
2624
- attr_accessor :page_token
2625
-
2626
- # Restrict the query to call sets within the given variant sets. At least one
2627
- # ID must be provided.
2628
- # Corresponds to the JSON property `variantSetIds`
2629
- # @return [Array<String>]
2630
- attr_accessor :variant_set_ids
2631
-
2632
- def initialize(**args)
2633
- update!(**args)
2634
- end
2635
-
2636
- # Update properties of this object
2637
- def update!(**args)
2638
- @name = args[:name] if args.key?(:name)
2639
- @page_size = args[:page_size] if args.key?(:page_size)
2640
- @page_token = args[:page_token] if args.key?(:page_token)
2641
- @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
2642
- end
2643
- end
2644
-
2645
- # The call set search response.
2646
- class SearchCallSetsResponse
2647
- include Google::Apis::Core::Hashable
2648
-
2649
- # The list of matching call sets.
2650
- # Corresponds to the JSON property `callSets`
2651
- # @return [Array<Google::Apis::GenomicsV1::CallSet>]
2652
- attr_accessor :call_sets
2653
-
2654
- # The continuation token, which is used to page through large result sets.
2655
- # Provide this value in a subsequent request to return the next page of
2656
- # results. This field will be empty if there aren't any additional results.
2657
- # Corresponds to the JSON property `nextPageToken`
2658
- # @return [String]
2659
- attr_accessor :next_page_token
2660
-
2661
- def initialize(**args)
2662
- update!(**args)
2663
- end
2664
-
2665
- # Update properties of this object
2666
- def update!(**args)
2667
- @call_sets = args[:call_sets] if args.key?(:call_sets)
2668
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2669
- end
2670
- end
2671
-
2672
- # The read group set search request.
2673
- class SearchReadGroupSetsRequest
2674
- include Google::Apis::Core::Hashable
2675
-
2676
- # Restricts this query to read group sets within the given datasets. At least
2677
- # one ID must be provided.
2678
- # Corresponds to the JSON property `datasetIds`
2679
- # @return [Array<String>]
2680
- attr_accessor :dataset_ids
2681
-
2682
- # Only return read group sets for which a substring of the name matches this
2683
- # string.
2684
- # Corresponds to the JSON property `name`
2685
- # @return [String]
2686
- attr_accessor :name
2687
-
2688
- # The maximum number of results to return in a single page. If unspecified,
2689
- # defaults to 256. The maximum value is 1024.
2690
- # Corresponds to the JSON property `pageSize`
2691
- # @return [Fixnum]
2692
- attr_accessor :page_size
2693
-
2694
- # The continuation token, which is used to page through large result sets.
2695
- # To get the next page of results, set this parameter to the value of
2696
- # `nextPageToken` from the previous response.
2697
- # Corresponds to the JSON property `pageToken`
2698
- # @return [String]
2699
- attr_accessor :page_token
2700
-
2701
- def initialize(**args)
2702
- update!(**args)
2703
- end
2704
-
2705
- # Update properties of this object
2706
- def update!(**args)
2707
- @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
2708
- @name = args[:name] if args.key?(:name)
2709
- @page_size = args[:page_size] if args.key?(:page_size)
2710
- @page_token = args[:page_token] if args.key?(:page_token)
2711
- end
2712
- end
2713
-
2714
- # The read group set search response.
2715
- class SearchReadGroupSetsResponse
2716
- include Google::Apis::Core::Hashable
2717
-
2718
- # The continuation token, which is used to page through large result sets.
2719
- # Provide this value in a subsequent request to return the next page of
2720
- # results. This field will be empty if there aren't any additional results.
2721
- # Corresponds to the JSON property `nextPageToken`
2722
- # @return [String]
2723
- attr_accessor :next_page_token
2724
-
2725
- # The list of matching read group sets.
2726
- # Corresponds to the JSON property `readGroupSets`
2727
- # @return [Array<Google::Apis::GenomicsV1::ReadGroupSet>]
2728
- attr_accessor :read_group_sets
2729
-
2730
- def initialize(**args)
2731
- update!(**args)
2732
- end
2733
-
2734
- # Update properties of this object
2735
- def update!(**args)
2736
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2737
- @read_group_sets = args[:read_group_sets] if args.key?(:read_group_sets)
2738
- end
2739
- end
2740
-
2741
- # The read search request.
2742
- class SearchReadsRequest
2743
- include Google::Apis::Core::Hashable
2744
-
2745
- # The end position of the range on the reference, 0-based exclusive. If
2746
- # specified, `referenceName` must also be specified.
2747
- # Corresponds to the JSON property `end`
2748
- # @return [Fixnum]
2749
- attr_accessor :end
2750
-
2751
- # The maximum number of results to return in a single page. If unspecified,
2752
- # defaults to 256. The maximum value is 2048.
2753
- # Corresponds to the JSON property `pageSize`
2754
- # @return [Fixnum]
2755
- attr_accessor :page_size
2756
-
2757
- # The continuation token, which is used to page through large result sets.
2758
- # To get the next page of results, set this parameter to the value of
2759
- # `nextPageToken` from the previous response.
2760
- # Corresponds to the JSON property `pageToken`
2761
- # @return [String]
2762
- attr_accessor :page_token
2763
-
2764
- # The IDs of the read groups within which to search for reads. All specified
2765
- # read groups must belong to the same read group sets. Must specify one of
2766
- # `readGroupSetIds` or `readGroupIds`.
2767
- # Corresponds to the JSON property `readGroupIds`
2768
- # @return [Array<String>]
2769
- attr_accessor :read_group_ids
2770
-
2771
- # The IDs of the read groups sets within which to search for reads. All
2772
- # specified read group sets must be aligned against a common set of reference
2773
- # sequences; this defines the genomic coordinates for the query. Must specify
2774
- # one of `readGroupSetIds` or `readGroupIds`.
2775
- # Corresponds to the JSON property `readGroupSetIds`
2776
- # @return [Array<String>]
2777
- attr_accessor :read_group_set_ids
2778
-
2779
- # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
2780
- # `*`, only unmapped reads are returned. If unspecified, all reads (mapped
2781
- # and unmapped) are returned.
2782
- # Corresponds to the JSON property `referenceName`
2783
- # @return [String]
2784
- attr_accessor :reference_name
2785
-
2786
- # The start position of the range on the reference, 0-based inclusive. If
2787
- # specified, `referenceName` must also be specified.
2788
- # Corresponds to the JSON property `start`
2789
- # @return [Fixnum]
2790
- attr_accessor :start
2791
-
2792
- def initialize(**args)
2793
- update!(**args)
2794
- end
2795
-
2796
- # Update properties of this object
2797
- def update!(**args)
2798
- @end = args[:end] if args.key?(:end)
2799
- @page_size = args[:page_size] if args.key?(:page_size)
2800
- @page_token = args[:page_token] if args.key?(:page_token)
2801
- @read_group_ids = args[:read_group_ids] if args.key?(:read_group_ids)
2802
- @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
2803
- @reference_name = args[:reference_name] if args.key?(:reference_name)
2804
- @start = args[:start] if args.key?(:start)
2805
- end
2806
- end
2807
-
2808
- # The read search response.
2809
- class SearchReadsResponse
2810
- include Google::Apis::Core::Hashable
2811
-
2812
- # The list of matching alignments sorted by mapped genomic coordinate,
2813
- # if any, ascending in position within the same reference. Unmapped reads,
2814
- # which have no position, are returned contiguously and are sorted in
2815
- # ascending lexicographic order by fragment name.
2816
- # Corresponds to the JSON property `alignments`
2817
- # @return [Array<Google::Apis::GenomicsV1::Read>]
2818
- attr_accessor :alignments
2819
-
2820
- # The continuation token, which is used to page through large result sets.
2821
- # Provide this value in a subsequent request to return the next page of
2822
- # results. This field will be empty if there aren't any additional results.
2823
- # Corresponds to the JSON property `nextPageToken`
2824
- # @return [String]
2825
- attr_accessor :next_page_token
2826
-
2827
- def initialize(**args)
2828
- update!(**args)
2829
- end
2830
-
2831
- # Update properties of this object
2832
- def update!(**args)
2833
- @alignments = args[:alignments] if args.key?(:alignments)
2834
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2835
- end
2836
- end
2837
-
2838
- #
2839
- class SearchReferenceSetsRequest
2840
- include Google::Apis::Core::Hashable
2841
-
2842
- # If present, return reference sets for which a prefix of any of
2843
- # sourceAccessions
2844
- # match any of these strings. Accession numbers typically have a main number
2845
- # and a version, for example `NC_000001.11`.
2846
- # Corresponds to the JSON property `accessions`
2847
- # @return [Array<String>]
2848
- attr_accessor :accessions
2849
-
2850
- # If present, return reference sets for which a substring of their
2851
- # `assemblyId` matches this string (case insensitive).
2852
- # Corresponds to the JSON property `assemblyId`
2853
- # @return [String]
2854
- attr_accessor :assembly_id
2855
-
2856
- # If present, return reference sets for which the
2857
- # md5checksum matches exactly.
2858
- # Corresponds to the JSON property `md5checksums`
2859
- # @return [Array<String>]
2860
- attr_accessor :md5checksums
2861
-
2862
- # The maximum number of results to return in a single page. If unspecified,
2863
- # defaults to 1024. The maximum value is 4096.
2864
- # Corresponds to the JSON property `pageSize`
2865
- # @return [Fixnum]
2866
- attr_accessor :page_size
2867
-
2868
- # The continuation token, which is used to page through large result sets.
2869
- # To get the next page of results, set this parameter to the value of
2870
- # `nextPageToken` from the previous response.
2871
- # Corresponds to the JSON property `pageToken`
2872
- # @return [String]
2873
- attr_accessor :page_token
2874
-
2875
- def initialize(**args)
2876
- update!(**args)
2877
- end
2878
-
2879
- # Update properties of this object
2880
- def update!(**args)
2881
- @accessions = args[:accessions] if args.key?(:accessions)
2882
- @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
2883
- @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
2884
- @page_size = args[:page_size] if args.key?(:page_size)
2885
- @page_token = args[:page_token] if args.key?(:page_token)
2886
- end
2887
- end
2888
-
2889
- #
2890
- class SearchReferenceSetsResponse
2891
- include Google::Apis::Core::Hashable
2892
-
2893
- # The continuation token, which is used to page through large result sets.
2894
- # Provide this value in a subsequent request to return the next page of
2895
- # results. This field will be empty if there aren't any additional results.
2896
- # Corresponds to the JSON property `nextPageToken`
2897
- # @return [String]
2898
- attr_accessor :next_page_token
2899
-
2900
- # The matching references sets.
2901
- # Corresponds to the JSON property `referenceSets`
2902
- # @return [Array<Google::Apis::GenomicsV1::ReferenceSet>]
2903
- attr_accessor :reference_sets
2904
-
2905
- def initialize(**args)
2906
- update!(**args)
2907
- end
2908
-
2909
- # Update properties of this object
2910
- def update!(**args)
2911
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2912
- @reference_sets = args[:reference_sets] if args.key?(:reference_sets)
2913
- end
2914
- end
2915
-
2916
- #
2917
- class SearchReferencesRequest
2918
- include Google::Apis::Core::Hashable
2919
-
2920
- # If present, return references for which a prefix of any of
2921
- # sourceAccessions match
2922
- # any of these strings. Accession numbers typically have a main number and a
2923
- # version, for example `GCF_000001405.26`.
2924
- # Corresponds to the JSON property `accessions`
2925
- # @return [Array<String>]
2926
- attr_accessor :accessions
2927
-
2928
- # If present, return references for which the
2929
- # md5checksum matches exactly.
2930
- # Corresponds to the JSON property `md5checksums`
2931
- # @return [Array<String>]
2932
- attr_accessor :md5checksums
2933
-
2934
- # The maximum number of results to return in a single page. If unspecified,
2935
- # defaults to 1024. The maximum value is 4096.
2936
- # Corresponds to the JSON property `pageSize`
2937
- # @return [Fixnum]
2938
- attr_accessor :page_size
2939
-
2940
- # The continuation token, which is used to page through large result sets.
2941
- # To get the next page of results, set this parameter to the value of
2942
- # `nextPageToken` from the previous response.
2943
- # Corresponds to the JSON property `pageToken`
2944
- # @return [String]
2945
- attr_accessor :page_token
2946
-
2947
- # If present, return only references which belong to this reference set.
2948
- # Corresponds to the JSON property `referenceSetId`
2949
- # @return [String]
2950
- attr_accessor :reference_set_id
2951
-
2952
- def initialize(**args)
2953
- update!(**args)
2954
- end
2955
-
2956
- # Update properties of this object
2957
- def update!(**args)
2958
- @accessions = args[:accessions] if args.key?(:accessions)
2959
- @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
2960
- @page_size = args[:page_size] if args.key?(:page_size)
2961
- @page_token = args[:page_token] if args.key?(:page_token)
2962
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2963
- end
2964
- end
2965
-
2966
- #
2967
- class SearchReferencesResponse
2968
- include Google::Apis::Core::Hashable
2969
-
2970
- # The continuation token, which is used to page through large result sets.
2971
- # Provide this value in a subsequent request to return the next page of
2972
- # results. This field will be empty if there aren't any additional results.
2973
- # Corresponds to the JSON property `nextPageToken`
2974
- # @return [String]
2975
- attr_accessor :next_page_token
2976
-
2977
- # The matching references.
2978
- # Corresponds to the JSON property `references`
2979
- # @return [Array<Google::Apis::GenomicsV1::Reference>]
2980
- attr_accessor :references
2981
-
2982
- def initialize(**args)
2983
- update!(**args)
2984
- end
2985
-
2986
- # Update properties of this object
2987
- def update!(**args)
2988
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2989
- @references = args[:references] if args.key?(:references)
2990
- end
2991
- end
2992
-
2993
- # The search variant sets request.
2994
- class SearchVariantSetsRequest
2995
- include Google::Apis::Core::Hashable
2996
-
2997
- # Exactly one dataset ID must be provided here. Only variant sets which
2998
- # belong to this dataset will be returned.
2999
- # Corresponds to the JSON property `datasetIds`
3000
- # @return [Array<String>]
3001
- attr_accessor :dataset_ids
3002
-
3003
- # The maximum number of results to return in a single page. If unspecified,
3004
- # defaults to 1024.
3005
- # Corresponds to the JSON property `pageSize`
3006
- # @return [Fixnum]
3007
- attr_accessor :page_size
3008
-
3009
- # The continuation token, which is used to page through large result sets.
3010
- # To get the next page of results, set this parameter to the value of
3011
- # `nextPageToken` from the previous response.
3012
- # Corresponds to the JSON property `pageToken`
3013
- # @return [String]
3014
- attr_accessor :page_token
3015
-
3016
- def initialize(**args)
3017
- update!(**args)
3018
- end
3019
-
3020
- # Update properties of this object
3021
- def update!(**args)
3022
- @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
3023
- @page_size = args[:page_size] if args.key?(:page_size)
3024
- @page_token = args[:page_token] if args.key?(:page_token)
3025
- end
3026
- end
3027
-
3028
- # The search variant sets response.
3029
- class SearchVariantSetsResponse
3030
- include Google::Apis::Core::Hashable
3031
-
3032
- # The continuation token, which is used to page through large result sets.
3033
- # Provide this value in a subsequent request to return the next page of
3034
- # results. This field will be empty if there aren't any additional results.
3035
- # Corresponds to the JSON property `nextPageToken`
3036
- # @return [String]
3037
- attr_accessor :next_page_token
3038
-
3039
- # The variant sets belonging to the requested dataset.
3040
- # Corresponds to the JSON property `variantSets`
3041
- # @return [Array<Google::Apis::GenomicsV1::VariantSet>]
3042
- attr_accessor :variant_sets
3043
-
3044
- def initialize(**args)
3045
- update!(**args)
3046
- end
3047
-
3048
- # Update properties of this object
3049
- def update!(**args)
3050
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3051
- @variant_sets = args[:variant_sets] if args.key?(:variant_sets)
3052
- end
3053
- end
3054
-
3055
- # The variant search request.
3056
- class SearchVariantsRequest
3057
- include Google::Apis::Core::Hashable
3058
-
3059
- # Only return variant calls which belong to call sets with these ids.
3060
- # Leaving this blank returns all variant calls. If a variant has no
3061
- # calls belonging to any of these call sets, it won't be returned at all.
3062
- # Corresponds to the JSON property `callSetIds`
3063
- # @return [Array<String>]
3064
- attr_accessor :call_set_ids
3065
-
3066
- # The end of the window, 0-based exclusive. If unspecified or 0, defaults to
3067
- # the length of the reference.
3068
- # Corresponds to the JSON property `end`
3069
- # @return [Fixnum]
3070
- attr_accessor :end
3071
-
3072
- # The maximum number of calls to return in a single page. Note that this
3073
- # limit may be exceeded in the event that a matching variant contains more
3074
- # calls than the requested maximum. If unspecified, defaults to 5000. The
3075
- # maximum value is 10000.
3076
- # Corresponds to the JSON property `maxCalls`
3077
- # @return [Fixnum]
3078
- attr_accessor :max_calls
3079
-
3080
- # The maximum number of variants to return in a single page. If unspecified,
3081
- # defaults to 5000. The maximum value is 10000.
3082
- # Corresponds to the JSON property `pageSize`
3083
- # @return [Fixnum]
3084
- attr_accessor :page_size
3085
-
3086
- # The continuation token, which is used to page through large result sets.
3087
- # To get the next page of results, set this parameter to the value of
3088
- # `nextPageToken` from the previous response.
3089
- # Corresponds to the JSON property `pageToken`
3090
- # @return [String]
3091
- attr_accessor :page_token
3092
-
3093
- # Required. Only return variants in this reference sequence.
3094
- # Corresponds to the JSON property `referenceName`
3095
- # @return [String]
3096
- attr_accessor :reference_name
3097
-
3098
- # The beginning of the window (0-based, inclusive) for which
3099
- # overlapping variants should be returned. If unspecified, defaults to 0.
3100
- # Corresponds to the JSON property `start`
3101
- # @return [Fixnum]
3102
- attr_accessor :start
3103
-
3104
- # Only return variants which have exactly this name.
3105
- # Corresponds to the JSON property `variantName`
3106
- # @return [String]
3107
- attr_accessor :variant_name
3108
-
3109
- # At most one variant set ID must be provided. Only variants from this
3110
- # variant set will be returned. If omitted, a call set id must be included in
3111
- # the request.
3112
- # Corresponds to the JSON property `variantSetIds`
3113
- # @return [Array<String>]
3114
- attr_accessor :variant_set_ids
3115
-
3116
- def initialize(**args)
3117
- update!(**args)
3118
- end
3119
-
3120
- # Update properties of this object
3121
- def update!(**args)
3122
- @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
3123
- @end = args[:end] if args.key?(:end)
3124
- @max_calls = args[:max_calls] if args.key?(:max_calls)
3125
- @page_size = args[:page_size] if args.key?(:page_size)
3126
- @page_token = args[:page_token] if args.key?(:page_token)
3127
- @reference_name = args[:reference_name] if args.key?(:reference_name)
3128
- @start = args[:start] if args.key?(:start)
3129
- @variant_name = args[:variant_name] if args.key?(:variant_name)
3130
- @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
3131
- end
3132
- end
3133
-
3134
- # The variant search response.
3135
- class SearchVariantsResponse
3136
- include Google::Apis::Core::Hashable
3137
-
3138
- # The continuation token, which is used to page through large result sets.
3139
- # Provide this value in a subsequent request to return the next page of
3140
- # results. This field will be empty if there aren't any additional results.
3141
- # Corresponds to the JSON property `nextPageToken`
3142
- # @return [String]
3143
- attr_accessor :next_page_token
3144
-
3145
- # The list of matching Variants.
3146
- # Corresponds to the JSON property `variants`
3147
- # @return [Array<Google::Apis::GenomicsV1::Variant>]
3148
- attr_accessor :variants
3149
-
3150
- def initialize(**args)
3151
- update!(**args)
3152
- end
3153
-
3154
- # Update properties of this object
3155
- def update!(**args)
3156
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3157
- @variants = args[:variants] if args.key?(:variants)
3158
- end
3159
- end
3160
-
3161
- # Request message for `SetIamPolicy` method.
3162
- class SetIamPolicyRequest
3163
- include Google::Apis::Core::Hashable
3164
-
3165
- # Defines an Identity and Access Management (IAM) policy. It is used to
3166
- # specify access control policies for Cloud Platform resources.
3167
- # A `Policy` consists of a list of `bindings`. A `binding` binds a list of
3168
- # `members` to a `role`, where the members can be user accounts, Google groups,
3169
- # Google domains, and service accounts. A `role` is a named list of permissions
3170
- # defined by IAM.
3171
- # **JSON Example**
3172
- # `
3173
- # "bindings": [
3174
- # `
3175
- # "role": "roles/owner",
3176
- # "members": [
3177
- # "user:mike@example.com",
3178
- # "group:admins@example.com",
3179
- # "domain:google.com",
3180
- # "serviceAccount:my-other-app@appspot.gserviceaccount.com"
3181
- # ]
3182
- # `,
3183
- # `
3184
- # "role": "roles/viewer",
3185
- # "members": ["user:sean@example.com"]
3186
- # `
3187
- # ]
3188
- # `
3189
- # **YAML Example**
3190
- # bindings:
3191
- # - members:
3192
- # - user:mike@example.com
3193
- # - group:admins@example.com
3194
- # - domain:google.com
3195
- # - serviceAccount:my-other-app@appspot.gserviceaccount.com
3196
- # role: roles/owner
3197
- # - members:
3198
- # - user:sean@example.com
3199
- # role: roles/viewer
3200
- # For a description of IAM and its features, see the
3201
- # [IAM developer's guide](https://cloud.google.com/iam/docs).
3202
- # Corresponds to the JSON property `policy`
3203
- # @return [Google::Apis::GenomicsV1::Policy]
3204
- attr_accessor :policy
3205
-
3206
- def initialize(**args)
3207
- update!(**args)
3208
- end
3209
-
3210
- # Update properties of this object
3211
- def update!(**args)
3212
- @policy = args[:policy] if args.key?(:policy)
567
+ @compute_engine = args[:compute_engine] if args.key?(:compute_engine)
3213
568
  end
3214
569
  end
3215
570
 
3216
- # The `Status` type defines a logical error model that is suitable for different
3217
- # programming environments, including REST APIs and RPC APIs. It is used by
3218
- # [gRPC](https://github.com/grpc). The error model is designed to be:
571
+ # The `Status` type defines a logical error model that is suitable for
572
+ # different programming environments, including REST APIs and RPC APIs. It is
573
+ # used by [gRPC](https://github.com/grpc). The error model is designed to be:
3219
574
  # - Simple to use and understand for most users
3220
575
  # - Flexible enough to meet unexpected needs
3221
576
  # # Overview
3222
- # The `Status` message contains three pieces of data: error code, error message,
3223
- # and error details. The error code should be an enum value of
577
+ # The `Status` message contains three pieces of data: error code, error
578
+ # message, and error details. The error code should be an enum value of
3224
579
  # google.rpc.Code, but it may accept additional error codes if needed. The
3225
580
  # error message should be a developer-facing English message that helps
3226
581
  # developers *understand* and *resolve* the error. If a localized user-facing
@@ -3285,120 +640,6 @@ module Google
3285
640
  end
3286
641
  end
3287
642
 
3288
- # Request message for `TestIamPermissions` method.
3289
- class TestIamPermissionsRequest
3290
- include Google::Apis::Core::Hashable
3291
-
3292
- # REQUIRED: The set of permissions to check for the 'resource'.
3293
- # Permissions with wildcards (such as '*' or 'storage.*') are not allowed.
3294
- # Allowed permissions are&#58;
3295
- # * `genomics.datasets.create`
3296
- # * `genomics.datasets.delete`
3297
- # * `genomics.datasets.get`
3298
- # * `genomics.datasets.list`
3299
- # * `genomics.datasets.update`
3300
- # * `genomics.datasets.getIamPolicy`
3301
- # * `genomics.datasets.setIamPolicy`
3302
- # Corresponds to the JSON property `permissions`
3303
- # @return [Array<String>]
3304
- attr_accessor :permissions
3305
-
3306
- def initialize(**args)
3307
- update!(**args)
3308
- end
3309
-
3310
- # Update properties of this object
3311
- def update!(**args)
3312
- @permissions = args[:permissions] if args.key?(:permissions)
3313
- end
3314
- end
3315
-
3316
- # Response message for `TestIamPermissions` method.
3317
- class TestIamPermissionsResponse
3318
- include Google::Apis::Core::Hashable
3319
-
3320
- # A subset of `TestPermissionsRequest.permissions` that the caller is
3321
- # allowed.
3322
- # Corresponds to the JSON property `permissions`
3323
- # @return [Array<String>]
3324
- attr_accessor :permissions
3325
-
3326
- def initialize(**args)
3327
- update!(**args)
3328
- end
3329
-
3330
- # Update properties of this object
3331
- def update!(**args)
3332
- @permissions = args[:permissions] if args.key?(:permissions)
3333
- end
3334
- end
3335
-
3336
- # A transcript represents the assertion that a particular region of the
3337
- # reference genome may be transcribed as RNA.
3338
- class Transcript
3339
- include Google::Apis::Core::Hashable
3340
-
3341
- # The range of the coding sequence for this transcript, if any. To determine
3342
- # the exact ranges of coding sequence, intersect this range with those of the
3343
- # exons, if any. If there are any
3344
- # exons, the
3345
- # codingSequence must start
3346
- # and end within them.
3347
- # Note that in some cases, the reference genome will not exactly match the
3348
- # observed mRNA transcript e.g. due to variance in the source genome from
3349
- # reference. In these cases,
3350
- # exon.frame will not necessarily
3351
- # match the expected reference reading frame and coding exon reference bases
3352
- # cannot necessarily be concatenated to produce the original transcript mRNA.
3353
- # Corresponds to the JSON property `codingSequence`
3354
- # @return [Google::Apis::GenomicsV1::CodingSequence]
3355
- attr_accessor :coding_sequence
3356
-
3357
- # The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
3358
- # this transcript. This field should be unset for genomes where transcript
3359
- # splicing does not occur, for example prokaryotes.
3360
- # Introns are regions of the transcript that are not included in the
3361
- # spliced RNA product. Though not explicitly modeled here, intron ranges can
3362
- # be deduced; all regions of this transcript that are not exons are introns.
3363
- # Exonic sequences do not necessarily code for a translational product
3364
- # (amino acids). Only the regions of exons bounded by the
3365
- # codingSequence correspond
3366
- # to coding DNA sequence.
3367
- # Exons are ordered by start position and may not overlap.
3368
- # Corresponds to the JSON property `exons`
3369
- # @return [Array<Google::Apis::GenomicsV1::Exon>]
3370
- attr_accessor :exons
3371
-
3372
- # The annotation ID of the gene from which this transcript is transcribed.
3373
- # Corresponds to the JSON property `geneId`
3374
- # @return [String]
3375
- attr_accessor :gene_id
3376
-
3377
- def initialize(**args)
3378
- update!(**args)
3379
- end
3380
-
3381
- # Update properties of this object
3382
- def update!(**args)
3383
- @coding_sequence = args[:coding_sequence] if args.key?(:coding_sequence)
3384
- @exons = args[:exons] if args.key?(:exons)
3385
- @gene_id = args[:gene_id] if args.key?(:gene_id)
3386
- end
3387
- end
3388
-
3389
- #
3390
- class UndeleteDatasetRequest
3391
- include Google::Apis::Core::Hashable
3392
-
3393
- def initialize(**args)
3394
- update!(**args)
3395
- end
3396
-
3397
- # Update properties of this object
3398
- def update!(**args)
3399
- end
3400
- end
3401
-
3402
643
  # An event generated when the execution of a container results in a
3403
644
  # non-zero exit status that was not otherwise ignored. Execution will
3404
645
  # continue, but only actions that are flagged as `ALWAYS_RUN` will be
@@ -3427,378 +668,6 @@ module Google
3427
668
  end
3428
669
  end
3429
670
 
3430
- # A variant represents a change in DNA sequence relative to a reference
3431
- # sequence. For example, a variant could represent a SNP or an insertion.
3432
- # Variants belong to a variant set.
3433
- # Each of the calls on a variant represent a determination of genotype with
3434
- # respect to that variant. For example, a call might assign probability of 0.32
3435
- # to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
3436
- # belongs to a call set, which contains related calls typically from one
3437
- # sample.
3438
- class Variant
3439
- include Google::Apis::Core::Hashable
3440
-
3441
- # The bases that appear instead of the reference bases.
3442
- # Corresponds to the JSON property `alternateBases`
3443
- # @return [Array<String>]
3444
- attr_accessor :alternate_bases
3445
-
3446
- # The variant calls for this particular variant. Each one represents the
3447
- # determination of genotype with respect to this variant.
3448
- # Corresponds to the JSON property `calls`
3449
- # @return [Array<Google::Apis::GenomicsV1::VariantCall>]
3450
- attr_accessor :calls
3451
-
3452
- # The date this variant was created, in milliseconds from the epoch.
3453
- # Corresponds to the JSON property `created`
3454
- # @return [Fixnum]
3455
- attr_accessor :created
3456
-
3457
- # The end position (0-based) of this variant. This corresponds to the first
3458
- # base after the last base in the reference allele. So, the length of
3459
- # the reference allele is (end - start). This is useful for variants
3460
- # that don't explicitly give alternate bases, for example large deletions.
3461
- # Corresponds to the JSON property `end`
3462
- # @return [Fixnum]
3463
- attr_accessor :end
3464
-
3465
- # A list of filters (normally quality filters) this variant has failed.
3466
- # `PASS` indicates this variant has passed all filters.
3467
- # Corresponds to the JSON property `filter`
3468
- # @return [Array<String>]
3469
- attr_accessor :filter
3470
-
3471
- # The server-generated variant ID, unique across all variants.
3472
- # Corresponds to the JSON property `id`
3473
- # @return [String]
3474
- attr_accessor :id
3475
-
3476
- # A map of additional variant information. This must be of the form
3477
- # map<string, string[]> (string key mapping to a list of string values).
3478
- # Corresponds to the JSON property `info`
3479
- # @return [Hash<String,Array<Object>>]
3480
- attr_accessor :info
3481
-
3482
- # Names for the variant, for example a RefSNP ID.
3483
- # Corresponds to the JSON property `names`
3484
- # @return [Array<String>]
3485
- attr_accessor :names
3486
-
3487
- # A measure of how likely this variant is to be real.
3488
- # A higher value is better.
3489
- # Corresponds to the JSON property `quality`
3490
- # @return [Float]
3491
- attr_accessor :quality
3492
-
3493
- # The reference bases for this variant. They start at the given
3494
- # position.
3495
- # Corresponds to the JSON property `referenceBases`
3496
- # @return [String]
3497
- attr_accessor :reference_bases
3498
-
3499
- # The reference on which this variant occurs.
3500
- # (such as `chr20` or `X`)
3501
- # Corresponds to the JSON property `referenceName`
3502
- # @return [String]
3503
- attr_accessor :reference_name
3504
-
3505
- # The position at which this variant occurs (0-based).
3506
- # This corresponds to the first base of the string of reference bases.
3507
- # Corresponds to the JSON property `start`
3508
- # @return [Fixnum]
3509
- attr_accessor :start
3510
-
3511
- # The ID of the variant set this variant belongs to.
3512
- # Corresponds to the JSON property `variantSetId`
3513
- # @return [String]
3514
- attr_accessor :variant_set_id
3515
-
3516
- def initialize(**args)
3517
- update!(**args)
3518
- end
3519
-
3520
- # Update properties of this object
3521
- def update!(**args)
3522
- @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
3523
- @calls = args[:calls] if args.key?(:calls)
3524
- @created = args[:created] if args.key?(:created)
3525
- @end = args[:end] if args.key?(:end)
3526
- @filter = args[:filter] if args.key?(:filter)
3527
- @id = args[:id] if args.key?(:id)
3528
- @info = args[:info] if args.key?(:info)
3529
- @names = args[:names] if args.key?(:names)
3530
- @quality = args[:quality] if args.key?(:quality)
3531
- @reference_bases = args[:reference_bases] if args.key?(:reference_bases)
3532
- @reference_name = args[:reference_name] if args.key?(:reference_name)
3533
- @start = args[:start] if args.key?(:start)
3534
- @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
3535
- end
3536
- end
3537
-
3538
- #
3539
- class VariantAnnotation
3540
- include Google::Apis::Core::Hashable
3541
-
3542
- # The alternate allele for this variant. If multiple alternate alleles
3543
- # exist at this location, create a separate variant for each one, as they
3544
- # may represent distinct conditions.
3545
- # Corresponds to the JSON property `alternateBases`
3546
- # @return [String]
3547
- attr_accessor :alternate_bases
3548
-
3549
- # Describes the clinical significance of a variant.
3550
- # It is adapted from the ClinVar controlled vocabulary for clinical
3551
- # significance described at:
3552
- # http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
3553
- # Corresponds to the JSON property `clinicalSignificance`
3554
- # @return [String]
3555
- attr_accessor :clinical_significance
3556
-
3557
- # The set of conditions associated with this variant.
3558
- # A condition describes the way a variant influences human health.
3559
- # Corresponds to the JSON property `conditions`
3560
- # @return [Array<Google::Apis::GenomicsV1::ClinicalCondition>]
3561
- attr_accessor :conditions
3562
-
3563
- # Effect of the variant on the coding sequence.
3564
- # Corresponds to the JSON property `effect`
3565
- # @return [String]
3566
- attr_accessor :effect
3567
-
3568
- # Google annotation ID of the gene affected by this variant. This should
3569
- # be provided when the variant is created.
3570
- # Corresponds to the JSON property `geneId`
3571
- # @return [String]
3572
- attr_accessor :gene_id
3573
-
3574
- # Google annotation IDs of the transcripts affected by this variant. These
3575
- # should be provided when the variant is created.
3576
- # Corresponds to the JSON property `transcriptIds`
3577
- # @return [Array<String>]
3578
- attr_accessor :transcript_ids
3579
-
3580
- # Type has been adapted from ClinVar's list of variant types.
3581
- # Corresponds to the JSON property `type`
3582
- # @return [String]
3583
- attr_accessor :type
3584
-
3585
- def initialize(**args)
3586
- update!(**args)
3587
- end
3588
-
3589
- # Update properties of this object
3590
- def update!(**args)
3591
- @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
3592
- @clinical_significance = args[:clinical_significance] if args.key?(:clinical_significance)
3593
- @conditions = args[:conditions] if args.key?(:conditions)
3594
- @effect = args[:effect] if args.key?(:effect)
3595
- @gene_id = args[:gene_id] if args.key?(:gene_id)
3596
- @transcript_ids = args[:transcript_ids] if args.key?(:transcript_ids)
3597
- @type = args[:type] if args.key?(:type)
3598
- end
3599
- end
3600
-
3601
- # A call represents the determination of genotype with respect to a particular
3602
- # variant. It may include associated information such as quality and phasing.
3603
- # For example, a call might assign a probability of 0.32 to the occurrence of
3604
- # a SNP named rs1234 in a call set with the name NA12345.
3605
- class VariantCall
3606
- include Google::Apis::Core::Hashable
3607
-
3608
- # The ID of the call set this variant call belongs to.
3609
- # Corresponds to the JSON property `callSetId`
3610
- # @return [String]
3611
- attr_accessor :call_set_id
3612
-
3613
- # The name of the call set this variant call belongs to.
3614
- # Corresponds to the JSON property `callSetName`
3615
- # @return [String]
3616
- attr_accessor :call_set_name
3617
-
3618
- # The genotype of this variant call. Each value represents either the value
3619
- # of the `referenceBases` field or a 1-based index into
3620
- # `alternateBases`. If a variant had a `referenceBases`
3621
- # value of `T` and an `alternateBases`
3622
- # value of `["A", "C"]`, and the `genotype` was
3623
- # `[2, 1]`, that would mean the call
3624
- # represented the heterozygous value `CA` for this variant.
3625
- # If the `genotype` was instead `[0, 1]`, the
3626
- # represented value would be `TA`. Ordering of the
3627
- # genotype values is important if the `phaseset` is present.
3628
- # If a genotype is not called (that is, a `.` is present in the
3629
- # GT string) -1 is returned.
3630
- # Corresponds to the JSON property `genotype`
3631
- # @return [Array<Fixnum>]
3632
- attr_accessor :genotype
3633
-
3634
- # The genotype likelihoods for this variant call. Each array entry
3635
- # represents how likely a specific genotype is for this call. The value
3636
- # ordering is defined by the GL tag in the VCF spec.
3637
- # If Phred-scaled genotype likelihood scores (PL) are available and
3638
- # log10(P) genotype likelihood scores (GL) are not, PL scores are converted
3639
- # to GL scores. If both are available, PL scores are stored in `info`.
3640
- # Corresponds to the JSON property `genotypeLikelihood`
3641
- # @return [Array<Float>]
3642
- attr_accessor :genotype_likelihood
3643
-
3644
- # A map of additional variant call information. This must be of the form
3645
- # map<string, string[]> (string key mapping to a list of string values).
3646
- # Corresponds to the JSON property `info`
3647
- # @return [Hash<String,Array<Object>>]
3648
- attr_accessor :info
3649
-
3650
- # If this field is present, this variant call's genotype ordering implies
3651
- # the phase of the bases and is consistent with any other variant calls in
3652
- # the same reference sequence which have the same phaseset value.
3653
- # When importing data from VCF, if the genotype data was phased but no
3654
- # phase set was specified this field will be set to `*`.
3655
- # Corresponds to the JSON property `phaseset`
3656
- # @return [String]
3657
- attr_accessor :phaseset
3658
-
3659
- def initialize(**args)
3660
- update!(**args)
3661
- end
3662
-
3663
- # Update properties of this object
3664
- def update!(**args)
3665
- @call_set_id = args[:call_set_id] if args.key?(:call_set_id)
3666
- @call_set_name = args[:call_set_name] if args.key?(:call_set_name)
3667
- @genotype = args[:genotype] if args.key?(:genotype)
3668
- @genotype_likelihood = args[:genotype_likelihood] if args.key?(:genotype_likelihood)
3669
- @info = args[:info] if args.key?(:info)
3670
- @phaseset = args[:phaseset] if args.key?(:phaseset)
3671
- end
3672
- end
3673
-
3674
- # A variant set is a collection of call sets and variants. It contains summary
3675
- # statistics of those contents. A variant set belongs to a dataset.
3676
- class VariantSet
3677
- include Google::Apis::Core::Hashable
3678
-
3679
- # The dataset to which this variant set belongs.
3680
- # Corresponds to the JSON property `datasetId`
3681
- # @return [String]
3682
- attr_accessor :dataset_id
3683
-
3684
- # A textual description of this variant set.
3685
- # Corresponds to the JSON property `description`
3686
- # @return [String]
3687
- attr_accessor :description
3688
-
3689
- # The server-generated variant set ID, unique across all variant sets.
3690
- # Corresponds to the JSON property `id`
3691
- # @return [String]
3692
- attr_accessor :id
3693
-
3694
- # The metadata associated with this variant set.
3695
- # Corresponds to the JSON property `metadata`
3696
- # @return [Array<Google::Apis::GenomicsV1::VariantSetMetadata>]
3697
- attr_accessor :metadata
3698
-
3699
- # User-specified, mutable name.
3700
- # Corresponds to the JSON property `name`
3701
- # @return [String]
3702
- attr_accessor :name
3703
-
3704
- # A list of all references used by the variants in a variant set
3705
- # with associated coordinate upper bounds for each one.
3706
- # Corresponds to the JSON property `referenceBounds`
3707
- # @return [Array<Google::Apis::GenomicsV1::ReferenceBound>]
3708
- attr_accessor :reference_bounds
3709
-
3710
- # The reference set to which the variant set is mapped. The reference set
3711
- # describes the alignment provenance of the variant set, while the
3712
- # `referenceBounds` describe the shape of the actual variant data. The
3713
- # reference set's reference names are a superset of those found in the
3714
- # `referenceBounds`.
3715
- # For example, given a variant set that is mapped to the GRCh38 reference set
3716
- # and contains a single variant on reference 'X', `referenceBounds` would
3717
- # contain only an entry for 'X', while the associated reference set
3718
- # enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
3719
- # Corresponds to the JSON property `referenceSetId`
3720
- # @return [String]
3721
- attr_accessor :reference_set_id
3722
-
3723
- def initialize(**args)
3724
- update!(**args)
3725
- end
3726
-
3727
- # Update properties of this object
3728
- def update!(**args)
3729
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
3730
- @description = args[:description] if args.key?(:description)
3731
- @id = args[:id] if args.key?(:id)
3732
- @metadata = args[:metadata] if args.key?(:metadata)
3733
- @name = args[:name] if args.key?(:name)
3734
- @reference_bounds = args[:reference_bounds] if args.key?(:reference_bounds)
3735
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
3736
- end
3737
- end
3738
-
3739
- # Metadata describes a single piece of variant call metadata.
3740
- # These data include a top level key and either a single value string (value)
3741
- # or a list of key-value pairs (info.)
3742
- # Value and info are mutually exclusive.
3743
- class VariantSetMetadata
3744
- include Google::Apis::Core::Hashable
3745
-
3746
- # A textual description of this metadata.
3747
- # Corresponds to the JSON property `description`
3748
- # @return [String]
3749
- attr_accessor :description
3750
-
3751
- # User-provided ID field, not enforced by this API.
3752
- # Two or more pieces of structured metadata with identical
3753
- # id and key fields are considered equivalent.
3754
- # Corresponds to the JSON property `id`
3755
- # @return [String]
3756
- attr_accessor :id
3757
-
3758
- # Remaining structured metadata key-value pairs. This must be of the form
3759
- # map<string, string[]> (string key mapping to a list of string values).
3760
- # Corresponds to the JSON property `info`
3761
- # @return [Hash<String,Array<Object>>]
3762
- attr_accessor :info
3763
-
3764
- # The top-level key.
3765
- # Corresponds to the JSON property `key`
3766
- # @return [String]
3767
- attr_accessor :key
3768
-
3769
- # The number of values that can be included in a field described by this
3770
- # metadata.
3771
- # Corresponds to the JSON property `number`
3772
- # @return [String]
3773
- attr_accessor :number
3774
-
3775
- # The type of data. Possible types include: Integer, Float,
3776
- # Flag, Character, and String.
3777
- # Corresponds to the JSON property `type`
3778
- # @return [String]
3779
- attr_accessor :type
3780
-
3781
- # The value field for simple metadata
3782
- # Corresponds to the JSON property `value`
3783
- # @return [String]
3784
- attr_accessor :value
3785
-
3786
- def initialize(**args)
3787
- update!(**args)
3788
- end
3789
-
3790
- # Update properties of this object
3791
- def update!(**args)
3792
- @description = args[:description] if args.key?(:description)
3793
- @id = args[:id] if args.key?(:id)
3794
- @info = args[:info] if args.key?(:info)
3795
- @key = args[:key] if args.key?(:key)
3796
- @number = args[:number] if args.key?(:number)
3797
- @type = args[:type] if args.key?(:type)
3798
- @value = args[:value] if args.key?(:value)
3799
- end
3800
- end
3801
-
3802
671
  # An event generated after a worker VM has been assigned to run the
3803
672
  # pipeline.
3804
673
  class WorkerAssignedEvent