google-api-client 0.28.4 → 0.29.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.kokoro/build.bat +9 -6
- data/.kokoro/build.sh +2 -34
- data/.kokoro/continuous/common.cfg +6 -1
- data/.kokoro/continuous/linux.cfg +1 -1
- data/.kokoro/continuous/windows.cfg +17 -1
- data/.kokoro/osx.sh +2 -33
- data/.kokoro/presubmit/common.cfg +6 -1
- data/.kokoro/presubmit/linux.cfg +1 -1
- data/.kokoro/presubmit/windows.cfg +17 -1
- data/.kokoro/trampoline.bat +10 -0
- data/.kokoro/trampoline.sh +3 -23
- data/CHANGELOG.md +460 -0
- data/README.md +1 -1
- data/Rakefile +31 -0
- data/bin/generate-api +4 -2
- data/generated/google/apis/abusiveexperiencereport_v1/service.rb +2 -2
- data/generated/google/apis/acceleratedmobilepageurl_v1/service.rb +1 -1
- data/generated/google/apis/accessapproval_v1beta1/classes.rb +333 -0
- data/generated/google/apis/accessapproval_v1beta1/representations.rb +174 -0
- data/generated/google/apis/accessapproval_v1beta1/service.rb +728 -0
- data/generated/google/apis/accessapproval_v1beta1.rb +34 -0
- data/generated/google/apis/accesscontextmanager_v1/classes.rb +755 -0
- data/generated/google/apis/accesscontextmanager_v1/representations.rb +282 -0
- data/generated/google/apis/accesscontextmanager_v1/service.rb +788 -0
- data/generated/google/apis/accesscontextmanager_v1.rb +34 -0
- data/generated/google/apis/accesscontextmanager_v1beta/classes.rb +47 -31
- data/generated/google/apis/accesscontextmanager_v1beta/representations.rb +4 -0
- data/generated/google/apis/accesscontextmanager_v1beta/service.rb +16 -16
- data/generated/google/apis/accesscontextmanager_v1beta.rb +1 -1
- data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +95 -200
- data/generated/google/apis/adexchangebuyer2_v2beta1/representations.rb +0 -32
- data/generated/google/apis/adexchangebuyer2_v2beta1/service.rb +64 -104
- data/generated/google/apis/adexchangebuyer2_v2beta1.rb +1 -1
- data/generated/google/apis/adexchangebuyer_v1_2/service.rb +7 -7
- data/generated/google/apis/adexchangebuyer_v1_3/service.rb +21 -21
- data/generated/google/apis/adexchangebuyer_v1_4/service.rb +38 -38
- data/generated/google/apis/adexperiencereport_v1/service.rb +2 -2
- data/generated/google/apis/admin_datatransfer_v1/service.rb +5 -5
- data/generated/google/apis/admin_directory_v1/classes.rb +5 -50
- data/generated/google/apis/admin_directory_v1/representations.rb +0 -2
- data/generated/google/apis/admin_directory_v1/service.rb +113 -113
- data/generated/google/apis/admin_directory_v1.rb +1 -1
- data/generated/google/apis/admin_reports_v1/service.rb +6 -6
- data/generated/google/apis/admin_reports_v1.rb +1 -1
- data/generated/google/apis/adsense_v1_4/service.rb +39 -39
- data/generated/google/apis/adsensehost_v4_1/service.rb +26 -26
- data/generated/google/apis/alertcenter_v1beta1/classes.rb +101 -2
- data/generated/google/apis/alertcenter_v1beta1/representations.rb +25 -0
- data/generated/google/apis/alertcenter_v1beta1/service.rb +17 -16
- data/generated/google/apis/alertcenter_v1beta1.rb +1 -1
- data/generated/google/apis/analytics_v2_4/service.rb +6 -6
- data/generated/google/apis/analytics_v3/service.rb +88 -88
- data/generated/google/apis/analyticsreporting_v4/classes.rb +638 -0
- data/generated/google/apis/analyticsreporting_v4/representations.rb +248 -0
- data/generated/google/apis/analyticsreporting_v4/service.rb +31 -1
- data/generated/google/apis/analyticsreporting_v4.rb +1 -1
- data/generated/google/apis/androiddeviceprovisioning_v1/classes.rb +51 -11
- data/generated/google/apis/androiddeviceprovisioning_v1/representations.rb +6 -0
- data/generated/google/apis/androiddeviceprovisioning_v1/service.rb +26 -26
- data/generated/google/apis/androiddeviceprovisioning_v1.rb +1 -1
- data/generated/google/apis/androidenterprise_v1/classes.rb +26 -30
- data/generated/google/apis/androidenterprise_v1/representations.rb +2 -14
- data/generated/google/apis/androidenterprise_v1/service.rb +85 -121
- data/generated/google/apis/androidenterprise_v1.rb +1 -1
- data/generated/google/apis/androidmanagement_v1/classes.rb +358 -4
- data/generated/google/apis/androidmanagement_v1/representations.rb +163 -0
- data/generated/google/apis/androidmanagement_v1/service.rb +191 -21
- data/generated/google/apis/androidmanagement_v1.rb +1 -1
- data/generated/google/apis/androidpublisher_v1/service.rb +2 -2
- data/generated/google/apis/androidpublisher_v1_1/service.rb +3 -3
- data/generated/google/apis/androidpublisher_v2/service.rb +64 -70
- data/generated/google/apis/androidpublisher_v2.rb +1 -1
- data/generated/google/apis/androidpublisher_v3/classes.rb +113 -0
- data/generated/google/apis/androidpublisher_v3/representations.rb +58 -0
- data/generated/google/apis/androidpublisher_v3/service.rb +234 -64
- data/generated/google/apis/androidpublisher_v3.rb +1 -1
- data/generated/google/apis/appengine_v1/classes.rb +45 -100
- data/generated/google/apis/appengine_v1/representations.rb +17 -35
- data/generated/google/apis/appengine_v1/service.rb +45 -39
- data/generated/google/apis/appengine_v1.rb +1 -1
- data/generated/google/apis/appengine_v1alpha/classes.rb +2 -99
- data/generated/google/apis/appengine_v1alpha/representations.rb +0 -35
- data/generated/google/apis/appengine_v1alpha/service.rb +15 -15
- data/generated/google/apis/appengine_v1alpha.rb +1 -1
- data/generated/google/apis/appengine_v1beta/classes.rb +7 -102
- data/generated/google/apis/appengine_v1beta/representations.rb +0 -35
- data/generated/google/apis/appengine_v1beta/service.rb +45 -39
- data/generated/google/apis/appengine_v1beta.rb +1 -1
- data/generated/google/apis/appengine_v1beta4/service.rb +20 -20
- data/generated/google/apis/appengine_v1beta5/service.rb +20 -20
- data/generated/google/apis/appsactivity_v1/service.rb +5 -4
- data/generated/google/apis/appsactivity_v1.rb +1 -1
- data/generated/google/apis/appsmarket_v2/service.rb +3 -3
- data/generated/google/apis/appstate_v1/service.rb +5 -5
- data/generated/google/apis/bigquery_v2/classes.rb +1121 -114
- data/generated/google/apis/bigquery_v2/representations.rb +414 -26
- data/generated/google/apis/bigquery_v2/service.rb +184 -22
- data/generated/google/apis/bigquery_v2.rb +1 -1
- data/generated/google/apis/bigquerydatatransfer_v1/classes.rb +88 -10
- data/generated/google/apis/bigquerydatatransfer_v1/representations.rb +43 -0
- data/generated/google/apis/bigquerydatatransfer_v1/service.rb +142 -34
- data/generated/google/apis/bigquerydatatransfer_v1.rb +3 -3
- data/generated/google/apis/bigtableadmin_v1/service.rb +3 -3
- data/generated/google/apis/bigtableadmin_v1.rb +2 -2
- data/generated/google/apis/bigtableadmin_v2/classes.rb +14 -14
- data/generated/google/apis/bigtableadmin_v2/service.rb +142 -33
- data/generated/google/apis/bigtableadmin_v2.rb +2 -2
- data/generated/google/apis/binaryauthorization_v1beta1/classes.rb +66 -6
- data/generated/google/apis/binaryauthorization_v1beta1/representations.rb +17 -0
- data/generated/google/apis/binaryauthorization_v1beta1/service.rb +17 -13
- data/generated/google/apis/binaryauthorization_v1beta1.rb +1 -1
- data/generated/google/apis/blogger_v2/service.rb +9 -9
- data/generated/google/apis/blogger_v3/service.rb +33 -33
- data/generated/google/apis/books_v1/service.rb +51 -51
- data/generated/google/apis/calendar_v3/classes.rb +1 -1
- data/generated/google/apis/calendar_v3/service.rb +47 -47
- data/generated/google/apis/calendar_v3.rb +1 -1
- data/generated/google/apis/chat_v1/service.rb +8 -8
- data/generated/google/apis/civicinfo_v2/service.rb +5 -5
- data/generated/google/apis/classroom_v1/classes.rb +77 -0
- data/generated/google/apis/classroom_v1/representations.rb +32 -0
- data/generated/google/apis/classroom_v1/service.rb +276 -51
- data/generated/google/apis/classroom_v1.rb +7 -1
- data/generated/google/apis/cloudasset_v1/classes.rb +818 -0
- data/generated/google/apis/cloudasset_v1/representations.rb +264 -0
- data/generated/google/apis/cloudasset_v1/service.rb +191 -0
- data/generated/google/apis/cloudasset_v1.rb +34 -0
- data/generated/google/apis/cloudasset_v1beta1/classes.rb +33 -18
- data/generated/google/apis/cloudasset_v1beta1/representations.rb +1 -0
- data/generated/google/apis/cloudasset_v1beta1/service.rb +13 -13
- data/generated/google/apis/cloudasset_v1beta1.rb +2 -2
- data/generated/google/apis/cloudbilling_v1/classes.rb +1 -1
- data/generated/google/apis/cloudbilling_v1/service.rb +14 -14
- data/generated/google/apis/cloudbilling_v1.rb +1 -1
- data/generated/google/apis/cloudbuild_v1/classes.rb +162 -11
- data/generated/google/apis/cloudbuild_v1/representations.rb +67 -0
- data/generated/google/apis/cloudbuild_v1/service.rb +21 -15
- data/generated/google/apis/cloudbuild_v1.rb +1 -1
- data/generated/google/apis/cloudbuild_v1alpha1/classes.rb +7 -1
- data/generated/google/apis/cloudbuild_v1alpha1/representations.rb +2 -0
- data/generated/google/apis/cloudbuild_v1alpha1/service.rb +6 -6
- data/generated/google/apis/cloudbuild_v1alpha1.rb +1 -1
- data/generated/google/apis/clouddebugger_v2/service.rb +8 -8
- data/generated/google/apis/clouderrorreporting_v1beta1/classes.rb +19 -16
- data/generated/google/apis/clouderrorreporting_v1beta1/service.rb +12 -11
- data/generated/google/apis/clouderrorreporting_v1beta1.rb +1 -1
- data/generated/google/apis/cloudfunctions_v1/classes.rb +21 -17
- data/generated/google/apis/cloudfunctions_v1/service.rb +22 -16
- data/generated/google/apis/cloudfunctions_v1.rb +1 -1
- data/generated/google/apis/cloudfunctions_v1beta2/classes.rb +20 -16
- data/generated/google/apis/cloudfunctions_v1beta2/service.rb +17 -11
- data/generated/google/apis/cloudfunctions_v1beta2.rb +1 -1
- data/generated/google/apis/cloudidentity_v1/classes.rb +14 -14
- data/generated/google/apis/cloudidentity_v1/service.rb +18 -27
- data/generated/google/apis/cloudidentity_v1.rb +7 -1
- data/generated/google/apis/cloudidentity_v1beta1/classes.rb +11 -11
- data/generated/google/apis/cloudidentity_v1beta1/service.rb +15 -21
- data/generated/google/apis/cloudidentity_v1beta1.rb +7 -1
- data/generated/google/apis/cloudiot_v1/classes.rb +11 -11
- data/generated/google/apis/cloudiot_v1/service.rb +23 -330
- data/generated/google/apis/cloudiot_v1.rb +1 -1
- data/generated/google/apis/cloudkms_v1/classes.rb +7 -3
- data/generated/google/apis/cloudkms_v1/service.rb +30 -30
- data/generated/google/apis/cloudkms_v1.rb +1 -1
- data/generated/google/apis/cloudprivatecatalog_v1beta1/classes.rb +358 -0
- data/generated/google/apis/cloudprivatecatalog_v1beta1/representations.rb +123 -0
- data/generated/google/apis/cloudprivatecatalog_v1beta1/service.rb +486 -0
- data/generated/google/apis/cloudprivatecatalog_v1beta1.rb +35 -0
- data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/classes.rb +1212 -0
- data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/representations.rb +399 -0
- data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/service.rb +1073 -0
- data/generated/google/apis/cloudprivatecatalogproducer_v1beta1.rb +35 -0
- data/generated/google/apis/cloudprofiler_v2/service.rb +3 -3
- data/generated/google/apis/cloudresourcemanager_v1/classes.rb +24 -22
- data/generated/google/apis/cloudresourcemanager_v1/service.rb +68 -59
- data/generated/google/apis/cloudresourcemanager_v1.rb +1 -1
- data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +3 -3
- data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +53 -42
- data/generated/google/apis/cloudresourcemanager_v1beta1.rb +1 -1
- data/generated/google/apis/cloudresourcemanager_v2/classes.rb +15 -16
- data/generated/google/apis/cloudresourcemanager_v2/service.rb +13 -13
- data/generated/google/apis/cloudresourcemanager_v2.rb +1 -1
- data/generated/google/apis/cloudresourcemanager_v2beta1/classes.rb +15 -16
- data/generated/google/apis/cloudresourcemanager_v2beta1/service.rb +13 -13
- data/generated/google/apis/cloudresourcemanager_v2beta1.rb +1 -1
- data/generated/google/apis/cloudscheduler_v1/classes.rb +994 -0
- data/generated/google/apis/cloudscheduler_v1/representations.rb +297 -0
- data/generated/google/apis/cloudscheduler_v1/service.rb +448 -0
- data/generated/google/apis/cloudscheduler_v1.rb +34 -0
- data/generated/google/apis/cloudscheduler_v1beta1/classes.rb +160 -44
- data/generated/google/apis/cloudscheduler_v1beta1/representations.rb +33 -0
- data/generated/google/apis/cloudscheduler_v1beta1/service.rb +15 -12
- data/generated/google/apis/cloudscheduler_v1beta1.rb +1 -1
- data/generated/google/apis/cloudsearch_v1/classes.rb +245 -59
- data/generated/google/apis/cloudsearch_v1/representations.rb +91 -0
- data/generated/google/apis/cloudsearch_v1/service.rb +86 -80
- data/generated/google/apis/cloudsearch_v1.rb +1 -1
- data/generated/google/apis/cloudshell_v1/classes.rb +11 -11
- data/generated/google/apis/cloudshell_v1/service.rb +4 -4
- data/generated/google/apis/cloudshell_v1.rb +1 -1
- data/generated/google/apis/cloudshell_v1alpha1/classes.rb +24 -11
- data/generated/google/apis/cloudshell_v1alpha1/representations.rb +2 -0
- data/generated/google/apis/cloudshell_v1alpha1/service.rb +11 -10
- data/generated/google/apis/cloudshell_v1alpha1.rb +1 -1
- data/generated/google/apis/cloudtasks_v2/classes.rb +1436 -0
- data/generated/google/apis/cloudtasks_v2/representations.rb +408 -0
- data/generated/google/apis/cloudtasks_v2/service.rb +856 -0
- data/generated/google/apis/{partners_v2.rb → cloudtasks_v2.rb} +11 -9
- data/generated/google/apis/cloudtasks_v2beta2/classes.rb +141 -102
- data/generated/google/apis/cloudtasks_v2beta2/service.rb +44 -43
- data/generated/google/apis/cloudtasks_v2beta2.rb +1 -1
- data/generated/google/apis/cloudtasks_v2beta3/classes.rb +388 -108
- data/generated/google/apis/cloudtasks_v2beta3/representations.rb +65 -0
- data/generated/google/apis/cloudtasks_v2beta3/service.rb +40 -39
- data/generated/google/apis/cloudtasks_v2beta3.rb +1 -1
- data/generated/google/apis/cloudtrace_v1/service.rb +3 -3
- data/generated/google/apis/cloudtrace_v2/classes.rb +10 -10
- data/generated/google/apis/cloudtrace_v2/service.rb +2 -2
- data/generated/google/apis/cloudtrace_v2.rb +1 -1
- data/generated/google/apis/commentanalyzer_v1alpha1/classes.rb +484 -0
- data/generated/google/apis/commentanalyzer_v1alpha1/representations.rb +210 -0
- data/generated/google/apis/commentanalyzer_v1alpha1/service.rb +124 -0
- data/generated/google/apis/commentanalyzer_v1alpha1.rb +39 -0
- data/generated/google/apis/composer_v1/classes.rb +21 -15
- data/generated/google/apis/composer_v1/service.rb +9 -9
- data/generated/google/apis/composer_v1.rb +1 -1
- data/generated/google/apis/composer_v1beta1/classes.rb +175 -36
- data/generated/google/apis/composer_v1beta1/representations.rb +50 -0
- data/generated/google/apis/composer_v1beta1/service.rb +9 -9
- data/generated/google/apis/composer_v1beta1.rb +1 -1
- data/generated/google/apis/compute_alpha/classes.rb +10112 -7289
- data/generated/google/apis/compute_alpha/representations.rb +1337 -219
- data/generated/google/apis/compute_alpha/service.rb +4259 -2728
- data/generated/google/apis/compute_alpha.rb +1 -1
- data/generated/google/apis/compute_beta/classes.rb +4254 -2781
- data/generated/google/apis/compute_beta/representations.rb +853 -283
- data/generated/google/apis/compute_beta/service.rb +7077 -5955
- data/generated/google/apis/compute_beta.rb +1 -1
- data/generated/google/apis/compute_v1/classes.rb +1259 -93
- data/generated/google/apis/compute_v1/representations.rb +450 -1
- data/generated/google/apis/compute_v1/service.rb +1085 -400
- data/generated/google/apis/compute_v1.rb +1 -1
- data/generated/google/apis/container_v1/classes.rb +201 -22
- data/generated/google/apis/container_v1/representations.rb +69 -0
- data/generated/google/apis/container_v1/service.rb +151 -102
- data/generated/google/apis/container_v1.rb +1 -1
- data/generated/google/apis/container_v1beta1/classes.rb +215 -25
- data/generated/google/apis/container_v1beta1/representations.rb +86 -0
- data/generated/google/apis/container_v1beta1/service.rb +106 -106
- data/generated/google/apis/container_v1beta1.rb +1 -1
- data/generated/google/apis/containeranalysis_v1alpha1/classes.rb +26 -18
- data/generated/google/apis/containeranalysis_v1alpha1/representations.rb +1 -0
- data/generated/google/apis/containeranalysis_v1alpha1/service.rb +33 -33
- data/generated/google/apis/containeranalysis_v1alpha1.rb +1 -1
- data/generated/google/apis/containeranalysis_v1beta1/classes.rb +226 -12
- data/generated/google/apis/containeranalysis_v1beta1/representations.rb +58 -0
- data/generated/google/apis/containeranalysis_v1beta1/service.rb +24 -24
- data/generated/google/apis/containeranalysis_v1beta1.rb +1 -1
- data/generated/google/apis/content_v2/classes.rb +218 -101
- data/generated/google/apis/content_v2/representations.rb +49 -0
- data/generated/google/apis/content_v2/service.rb +189 -152
- data/generated/google/apis/content_v2.rb +1 -1
- data/generated/google/apis/content_v2_1/classes.rb +387 -216
- data/generated/google/apis/content_v2_1/representations.rb +131 -56
- data/generated/google/apis/content_v2_1/service.rb +190 -107
- data/generated/google/apis/content_v2_1.rb +1 -1
- data/generated/google/apis/customsearch_v1/service.rb +2 -2
- data/generated/google/apis/dataflow_v1b3/classes.rb +148 -31
- data/generated/google/apis/dataflow_v1b3/representations.rb +45 -0
- data/generated/google/apis/dataflow_v1b3/service.rb +415 -56
- data/generated/google/apis/dataflow_v1b3.rb +1 -1
- data/generated/google/apis/datafusion_v1beta1/classes.rb +1304 -0
- data/generated/google/apis/datafusion_v1beta1/representations.rb +469 -0
- data/generated/google/apis/datafusion_v1beta1/service.rb +657 -0
- data/generated/google/apis/datafusion_v1beta1.rb +43 -0
- data/generated/google/apis/dataproc_v1/classes.rb +27 -22
- data/generated/google/apis/dataproc_v1/representations.rb +1 -0
- data/generated/google/apis/dataproc_v1/service.rb +261 -45
- data/generated/google/apis/dataproc_v1.rb +1 -1
- data/generated/google/apis/dataproc_v1beta2/classes.rb +534 -50
- data/generated/google/apis/dataproc_v1beta2/representations.rb +185 -7
- data/generated/google/apis/dataproc_v1beta2/service.rb +617 -51
- data/generated/google/apis/dataproc_v1beta2.rb +1 -1
- data/generated/google/apis/datastore_v1/classes.rb +20 -16
- data/generated/google/apis/datastore_v1/service.rb +15 -15
- data/generated/google/apis/datastore_v1.rb +1 -1
- data/generated/google/apis/datastore_v1beta1/classes.rb +10 -10
- data/generated/google/apis/datastore_v1beta1/service.rb +2 -2
- data/generated/google/apis/datastore_v1beta1.rb +1 -1
- data/generated/google/apis/datastore_v1beta3/classes.rb +10 -6
- data/generated/google/apis/datastore_v1beta3/service.rb +7 -7
- data/generated/google/apis/datastore_v1beta3.rb +1 -1
- data/generated/google/apis/deploymentmanager_alpha/service.rb +37 -37
- data/generated/google/apis/deploymentmanager_v2/service.rb +18 -18
- data/generated/google/apis/deploymentmanager_v2beta/service.rb +32 -32
- data/generated/google/apis/dfareporting_v3_1/service.rb +206 -206
- data/generated/google/apis/dfareporting_v3_2/service.rb +206 -206
- data/generated/google/apis/dfareporting_v3_3/classes.rb +3 -3
- data/generated/google/apis/dfareporting_v3_3/service.rb +204 -204
- data/generated/google/apis/dfareporting_v3_3.rb +1 -1
- data/generated/google/apis/dialogflow_v2/classes.rb +367 -82
- data/generated/google/apis/dialogflow_v2/representations.rb +99 -0
- data/generated/google/apis/dialogflow_v2/service.rb +76 -60
- data/generated/google/apis/dialogflow_v2.rb +1 -1
- data/generated/google/apis/dialogflow_v2beta1/classes.rb +199 -88
- data/generated/google/apis/dialogflow_v2beta1/representations.rb +31 -0
- data/generated/google/apis/dialogflow_v2beta1/service.rb +154 -94
- data/generated/google/apis/dialogflow_v2beta1.rb +1 -1
- data/generated/google/apis/digitalassetlinks_v1/service.rb +7 -6
- data/generated/google/apis/digitalassetlinks_v1.rb +1 -1
- data/generated/google/apis/discovery_v1/service.rb +2 -2
- data/generated/google/apis/dlp_v2/classes.rb +116 -45
- data/generated/google/apis/dlp_v2/representations.rb +32 -0
- data/generated/google/apis/dlp_v2/service.rb +85 -45
- data/generated/google/apis/dlp_v2.rb +1 -1
- data/generated/google/apis/dns_v1/classes.rb +83 -1
- data/generated/google/apis/dns_v1/representations.rb +34 -0
- data/generated/google/apis/dns_v1/service.rb +15 -15
- data/generated/google/apis/dns_v1.rb +1 -1
- data/generated/google/apis/dns_v1beta2/classes.rb +81 -1
- data/generated/google/apis/dns_v1beta2/representations.rb +33 -0
- data/generated/google/apis/dns_v1beta2/service.rb +21 -21
- data/generated/google/apis/dns_v1beta2.rb +1 -1
- data/generated/google/apis/dns_v2beta1/classes.rb +83 -1
- data/generated/google/apis/dns_v2beta1/representations.rb +34 -0
- data/generated/google/apis/dns_v2beta1/service.rb +16 -16
- data/generated/google/apis/dns_v2beta1.rb +1 -1
- data/generated/google/apis/docs_v1/classes.rb +265 -47
- data/generated/google/apis/docs_v1/representations.rb +96 -0
- data/generated/google/apis/docs_v1/service.rb +3 -3
- data/generated/google/apis/docs_v1.rb +1 -1
- data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +6 -4
- data/generated/google/apis/doubleclickbidmanager_v1/service.rb +9 -9
- data/generated/google/apis/doubleclickbidmanager_v1.rb +1 -1
- data/generated/google/apis/doubleclicksearch_v2/service.rb +10 -10
- data/generated/google/apis/drive_v2/classes.rb +601 -80
- data/generated/google/apis/drive_v2/representations.rb +152 -0
- data/generated/google/apis/drive_v2/service.rb +574 -164
- data/generated/google/apis/drive_v2.rb +1 -1
- data/generated/google/apis/drive_v3/classes.rb +591 -75
- data/generated/google/apis/drive_v3/representations.rb +151 -0
- data/generated/google/apis/drive_v3/service.rb +483 -116
- data/generated/google/apis/drive_v3.rb +1 -1
- data/generated/google/apis/driveactivity_v2/classes.rb +149 -17
- data/generated/google/apis/driveactivity_v2/representations.rb +69 -0
- data/generated/google/apis/driveactivity_v2/service.rb +1 -1
- data/generated/google/apis/driveactivity_v2.rb +1 -1
- data/generated/google/apis/factchecktools_v1alpha1/classes.rb +459 -0
- data/generated/google/apis/factchecktools_v1alpha1/representations.rb +207 -0
- data/generated/google/apis/factchecktools_v1alpha1/service.rb +300 -0
- data/generated/google/apis/factchecktools_v1alpha1.rb +34 -0
- data/generated/google/apis/fcm_v1/classes.rb +424 -0
- data/generated/google/apis/fcm_v1/representations.rb +167 -0
- data/generated/google/apis/fcm_v1/service.rb +97 -0
- data/generated/google/apis/fcm_v1.rb +35 -0
- data/generated/google/apis/file_v1/classes.rb +646 -11
- data/generated/google/apis/file_v1/representations.rb +207 -0
- data/generated/google/apis/file_v1/service.rb +196 -6
- data/generated/google/apis/file_v1.rb +1 -1
- data/generated/google/apis/file_v1beta1/classes.rb +461 -19
- data/generated/google/apis/file_v1beta1/representations.rb +137 -0
- data/generated/google/apis/file_v1beta1/service.rb +11 -11
- data/generated/google/apis/file_v1beta1.rb +1 -1
- data/generated/google/apis/firebasedynamiclinks_v1/classes.rb +41 -14
- data/generated/google/apis/firebasedynamiclinks_v1/representations.rb +4 -0
- data/generated/google/apis/firebasedynamiclinks_v1/service.rb +5 -5
- data/generated/google/apis/firebasedynamiclinks_v1.rb +1 -1
- data/generated/google/apis/firebasehosting_v1beta1/classes.rb +13 -13
- data/generated/google/apis/firebasehosting_v1beta1/service.rb +14 -14
- data/generated/google/apis/firebasehosting_v1beta1.rb +1 -1
- data/generated/google/apis/firebaserules_v1/classes.rb +10 -2
- data/generated/google/apis/firebaserules_v1/service.rb +12 -12
- data/generated/google/apis/firebaserules_v1.rb +1 -1
- data/generated/google/apis/firestore_v1/classes.rb +15 -15
- data/generated/google/apis/firestore_v1/service.rb +28 -28
- data/generated/google/apis/firestore_v1.rb +1 -1
- data/generated/google/apis/firestore_v1beta1/classes.rb +15 -15
- data/generated/google/apis/firestore_v1beta1/service.rb +19 -19
- data/generated/google/apis/firestore_v1beta1.rb +1 -1
- data/generated/google/apis/firestore_v1beta2/classes.rb +10 -10
- data/generated/google/apis/firestore_v1beta2/service.rb +9 -9
- data/generated/google/apis/firestore_v1beta2.rb +1 -1
- data/generated/google/apis/fitness_v1/classes.rb +4 -1
- data/generated/google/apis/fitness_v1/service.rb +14 -58
- data/generated/google/apis/fitness_v1.rb +1 -1
- data/generated/google/apis/fusiontables_v1/service.rb +32 -32
- data/generated/google/apis/fusiontables_v2/service.rb +34 -34
- data/generated/google/apis/games_configuration_v1configuration/service.rb +13 -13
- data/generated/google/apis/games_management_v1management/service.rb +27 -27
- data/generated/google/apis/games_management_v1management.rb +2 -2
- data/generated/google/apis/games_v1/service.rb +53 -53
- data/generated/google/apis/games_v1.rb +3 -3
- data/generated/google/apis/genomics_v1/classes.rb +190 -3321
- data/generated/google/apis/genomics_v1/representations.rb +128 -1265
- data/generated/google/apis/genomics_v1/service.rb +75 -1982
- data/generated/google/apis/genomics_v1.rb +1 -10
- data/generated/google/apis/genomics_v1alpha2/classes.rb +13 -53
- data/generated/google/apis/genomics_v1alpha2/representations.rb +0 -26
- data/generated/google/apis/genomics_v1alpha2/service.rb +11 -12
- data/generated/google/apis/genomics_v1alpha2.rb +1 -1
- data/generated/google/apis/genomics_v2alpha1/classes.rb +26 -58
- data/generated/google/apis/genomics_v2alpha1/representations.rb +1 -26
- data/generated/google/apis/genomics_v2alpha1/service.rb +6 -7
- data/generated/google/apis/genomics_v2alpha1.rb +1 -1
- data/generated/google/apis/gmail_v1/classes.rb +29 -0
- data/generated/google/apis/gmail_v1/representations.rb +13 -0
- data/generated/google/apis/gmail_v1/service.rb +142 -66
- data/generated/google/apis/gmail_v1.rb +1 -1
- data/generated/google/apis/groupsmigration_v1/service.rb +1 -1
- data/generated/google/apis/groupssettings_v1/classes.rb +126 -1
- data/generated/google/apis/groupssettings_v1/representations.rb +18 -0
- data/generated/google/apis/groupssettings_v1/service.rb +4 -4
- data/generated/google/apis/groupssettings_v1.rb +2 -2
- data/generated/google/apis/healthcare_v1alpha2/classes.rb +2849 -0
- data/generated/google/apis/healthcare_v1alpha2/representations.rb +1260 -0
- data/generated/google/apis/healthcare_v1alpha2/service.rb +4011 -0
- data/generated/google/apis/healthcare_v1alpha2.rb +34 -0
- data/generated/google/apis/healthcare_v1beta1/classes.rb +2464 -0
- data/generated/google/apis/healthcare_v1beta1/representations.rb +1042 -0
- data/generated/google/apis/healthcare_v1beta1/service.rb +3413 -0
- data/generated/google/apis/healthcare_v1beta1.rb +34 -0
- data/generated/google/apis/iam_v1/classes.rb +171 -1
- data/generated/google/apis/iam_v1/representations.rb +95 -0
- data/generated/google/apis/iam_v1/service.rb +249 -39
- data/generated/google/apis/iam_v1.rb +1 -1
- data/generated/google/apis/iamcredentials_v1/classes.rb +8 -4
- data/generated/google/apis/iamcredentials_v1/service.rb +15 -10
- data/generated/google/apis/iamcredentials_v1.rb +1 -1
- data/generated/google/apis/iap_v1/classes.rb +1 -1
- data/generated/google/apis/iap_v1/service.rb +3 -3
- data/generated/google/apis/iap_v1.rb +1 -1
- data/generated/google/apis/iap_v1beta1/classes.rb +1 -1
- data/generated/google/apis/iap_v1beta1/service.rb +3 -3
- data/generated/google/apis/iap_v1beta1.rb +1 -1
- data/generated/google/apis/identitytoolkit_v3/service.rb +20 -20
- data/generated/google/apis/indexing_v3/service.rb +2 -2
- data/generated/google/apis/jobs_v2/classes.rb +16 -17
- data/generated/google/apis/jobs_v2/service.rb +17 -17
- data/generated/google/apis/jobs_v2.rb +1 -1
- data/generated/google/apis/jobs_v3/classes.rb +14 -8
- data/generated/google/apis/jobs_v3/service.rb +16 -17
- data/generated/google/apis/jobs_v3.rb +1 -1
- data/generated/google/apis/jobs_v3p1beta1/classes.rb +26 -20
- data/generated/google/apis/jobs_v3p1beta1/service.rb +17 -18
- data/generated/google/apis/jobs_v3p1beta1.rb +1 -1
- data/generated/google/apis/kgsearch_v1/service.rb +1 -1
- data/generated/google/apis/language_v1/classes.rb +8 -7
- data/generated/google/apis/language_v1/service.rb +6 -6
- data/generated/google/apis/language_v1.rb +1 -1
- data/generated/google/apis/language_v1beta1/classes.rb +5 -5
- data/generated/google/apis/language_v1beta1/service.rb +4 -4
- data/generated/google/apis/language_v1beta1.rb +1 -1
- data/generated/google/apis/language_v1beta2/classes.rb +8 -7
- data/generated/google/apis/language_v1beta2/service.rb +6 -6
- data/generated/google/apis/language_v1beta2.rb +1 -1
- data/generated/google/apis/libraryagent_v1/service.rb +6 -6
- data/generated/google/apis/licensing_v1/service.rb +7 -7
- data/generated/google/apis/logging_v2/classes.rb +8 -3
- data/generated/google/apis/logging_v2/representations.rb +1 -0
- data/generated/google/apis/logging_v2/service.rb +72 -72
- data/generated/google/apis/logging_v2.rb +1 -1
- data/generated/google/apis/manufacturers_v1/service.rb +4 -4
- data/generated/google/apis/mirror_v1/service.rb +24 -24
- data/generated/google/apis/ml_v1/classes.rb +240 -52
- data/generated/google/apis/ml_v1/representations.rb +25 -2
- data/generated/google/apis/ml_v1/service.rb +36 -36
- data/generated/google/apis/ml_v1.rb +1 -1
- data/generated/google/apis/monitoring_v3/classes.rb +22 -18
- data/generated/google/apis/monitoring_v3/representations.rb +2 -1
- data/generated/google/apis/monitoring_v3/service.rb +42 -37
- data/generated/google/apis/monitoring_v3.rb +1 -1
- data/generated/google/apis/oauth2_v1/classes.rb +0 -124
- data/generated/google/apis/oauth2_v1/representations.rb +0 -62
- data/generated/google/apis/oauth2_v1/service.rb +3 -162
- data/generated/google/apis/oauth2_v1.rb +3 -6
- data/generated/google/apis/oauth2_v2/service.rb +4 -4
- data/generated/google/apis/oauth2_v2.rb +3 -6
- data/generated/google/apis/oslogin_v1/service.rb +8 -7
- data/generated/google/apis/oslogin_v1.rb +3 -2
- data/generated/google/apis/oslogin_v1alpha/service.rb +8 -7
- data/generated/google/apis/oslogin_v1alpha.rb +3 -2
- data/generated/google/apis/oslogin_v1beta/service.rb +8 -7
- data/generated/google/apis/oslogin_v1beta.rb +3 -2
- data/generated/google/apis/pagespeedonline_v1/service.rb +1 -1
- data/generated/google/apis/pagespeedonline_v2/service.rb +1 -1
- data/generated/google/apis/pagespeedonline_v4/service.rb +1 -1
- data/generated/google/apis/pagespeedonline_v5/classes.rb +43 -0
- data/generated/google/apis/pagespeedonline_v5/representations.rb +18 -0
- data/generated/google/apis/pagespeedonline_v5/service.rb +1 -1
- data/generated/google/apis/pagespeedonline_v5.rb +1 -1
- data/generated/google/apis/people_v1/classes.rb +38 -29
- data/generated/google/apis/people_v1/representations.rb +1 -0
- data/generated/google/apis/people_v1/service.rb +18 -13
- data/generated/google/apis/people_v1.rb +2 -5
- data/generated/google/apis/playcustomapp_v1/service.rb +1 -1
- data/generated/google/apis/plus_domains_v1/service.rb +18 -392
- data/generated/google/apis/plus_domains_v1.rb +4 -10
- data/generated/google/apis/plus_v1/service.rb +16 -16
- data/generated/google/apis/plus_v1.rb +4 -4
- data/generated/google/apis/poly_v1/classes.rb +8 -6
- data/generated/google/apis/poly_v1/service.rb +15 -12
- data/generated/google/apis/poly_v1.rb +1 -1
- data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +8 -6
- data/generated/google/apis/proximitybeacon_v1beta1/service.rb +17 -17
- data/generated/google/apis/proximitybeacon_v1beta1.rb +1 -1
- data/generated/google/apis/pubsub_v1/classes.rb +55 -39
- data/generated/google/apis/pubsub_v1/representations.rb +16 -0
- data/generated/google/apis/pubsub_v1/service.rb +46 -69
- data/generated/google/apis/pubsub_v1.rb +1 -1
- data/generated/google/apis/pubsub_v1beta1a/service.rb +15 -15
- data/generated/google/apis/pubsub_v1beta2/classes.rb +45 -1
- data/generated/google/apis/pubsub_v1beta2/representations.rb +16 -0
- data/generated/google/apis/pubsub_v1beta2/service.rb +20 -20
- data/generated/google/apis/pubsub_v1beta2.rb +1 -1
- data/generated/google/apis/redis_v1/classes.rb +30 -10
- data/generated/google/apis/redis_v1/representations.rb +13 -0
- data/generated/google/apis/redis_v1/service.rb +51 -15
- data/generated/google/apis/redis_v1.rb +1 -1
- data/generated/google/apis/redis_v1beta1/classes.rb +18 -21
- data/generated/google/apis/redis_v1beta1/representations.rb +0 -1
- data/generated/google/apis/redis_v1beta1/service.rb +15 -15
- data/generated/google/apis/redis_v1beta1.rb +1 -1
- data/generated/google/apis/remotebuildexecution_v1/classes.rb +50 -35
- data/generated/google/apis/remotebuildexecution_v1/representations.rb +2 -0
- data/generated/google/apis/remotebuildexecution_v1/service.rb +7 -7
- data/generated/google/apis/remotebuildexecution_v1.rb +1 -1
- data/generated/google/apis/remotebuildexecution_v1alpha/classes.rb +48 -33
- data/generated/google/apis/remotebuildexecution_v1alpha/representations.rb +2 -0
- data/generated/google/apis/remotebuildexecution_v1alpha/service.rb +10 -10
- data/generated/google/apis/remotebuildexecution_v1alpha.rb +1 -1
- data/generated/google/apis/remotebuildexecution_v2/classes.rb +58 -43
- data/generated/google/apis/remotebuildexecution_v2/representations.rb +2 -0
- data/generated/google/apis/remotebuildexecution_v2/service.rb +9 -9
- data/generated/google/apis/remotebuildexecution_v2.rb +1 -1
- data/generated/google/apis/replicapool_v1beta1/service.rb +10 -10
- data/generated/google/apis/reseller_v1/classes.rb +32 -39
- data/generated/google/apis/reseller_v1/service.rb +18 -18
- data/generated/google/apis/reseller_v1.rb +1 -1
- data/generated/google/apis/run_v1/classes.rb +73 -0
- data/generated/google/apis/run_v1/representations.rb +43 -0
- data/generated/google/apis/run_v1/service.rb +90 -0
- data/generated/google/apis/run_v1.rb +35 -0
- data/generated/google/apis/run_v1alpha1/classes.rb +3882 -0
- data/generated/google/apis/run_v1alpha1/representations.rb +1425 -0
- data/generated/google/apis/run_v1alpha1/service.rb +2071 -0
- data/generated/google/apis/run_v1alpha1.rb +35 -0
- data/generated/google/apis/runtimeconfig_v1/classes.rb +11 -11
- data/generated/google/apis/runtimeconfig_v1/service.rb +3 -3
- data/generated/google/apis/runtimeconfig_v1.rb +1 -1
- data/generated/google/apis/runtimeconfig_v1beta1/classes.rb +26 -25
- data/generated/google/apis/runtimeconfig_v1beta1/service.rb +22 -22
- data/generated/google/apis/runtimeconfig_v1beta1.rb +1 -1
- data/generated/google/apis/safebrowsing_v4/service.rb +7 -7
- data/generated/google/apis/script_v1/classes.rb +167 -6
- data/generated/google/apis/script_v1/representations.rb +79 -1
- data/generated/google/apis/script_v1/service.rb +16 -16
- data/generated/google/apis/script_v1.rb +1 -1
- data/generated/google/apis/searchconsole_v1/service.rb +1 -1
- data/generated/google/apis/securitycenter_v1/classes.rb +1627 -0
- data/generated/google/apis/securitycenter_v1/representations.rb +569 -0
- data/generated/google/apis/securitycenter_v1/service.rb +1110 -0
- data/generated/google/apis/securitycenter_v1.rb +35 -0
- data/generated/google/apis/securitycenter_v1beta1/classes.rb +1514 -0
- data/generated/google/apis/securitycenter_v1beta1/representations.rb +548 -0
- data/generated/google/apis/securitycenter_v1beta1/service.rb +1035 -0
- data/generated/google/apis/securitycenter_v1beta1.rb +35 -0
- data/generated/google/apis/servicebroker_v1/classes.rb +1 -1
- data/generated/google/apis/servicebroker_v1/service.rb +3 -3
- data/generated/google/apis/servicebroker_v1.rb +1 -1
- data/generated/google/apis/servicebroker_v1alpha1/classes.rb +1 -1
- data/generated/google/apis/servicebroker_v1alpha1/service.rb +16 -16
- data/generated/google/apis/servicebroker_v1alpha1.rb +1 -1
- data/generated/google/apis/servicebroker_v1beta1/classes.rb +1 -1
- data/generated/google/apis/servicebroker_v1beta1/service.rb +21 -21
- data/generated/google/apis/servicebroker_v1beta1.rb +1 -1
- data/generated/google/apis/serviceconsumermanagement_v1/classes.rb +453 -149
- data/generated/google/apis/serviceconsumermanagement_v1/representations.rb +202 -29
- data/generated/google/apis/serviceconsumermanagement_v1/service.rb +148 -62
- data/generated/google/apis/serviceconsumermanagement_v1.rb +1 -1
- data/generated/google/apis/servicecontrol_v1/classes.rb +122 -25
- data/generated/google/apis/servicecontrol_v1/representations.rb +47 -0
- data/generated/google/apis/servicecontrol_v1/service.rb +3 -3
- data/generated/google/apis/servicecontrol_v1.rb +1 -1
- data/generated/google/apis/servicemanagement_v1/classes.rb +93 -110
- data/generated/google/apis/servicemanagement_v1/representations.rb +13 -26
- data/generated/google/apis/servicemanagement_v1/service.rb +30 -27
- data/generated/google/apis/servicemanagement_v1.rb +1 -1
- data/generated/google/apis/servicenetworking_v1/classes.rb +3626 -0
- data/generated/google/apis/servicenetworking_v1/representations.rb +1055 -0
- data/generated/google/apis/servicenetworking_v1/service.rb +440 -0
- data/generated/google/apis/servicenetworking_v1.rb +38 -0
- data/generated/google/apis/servicenetworking_v1beta/classes.rb +65 -108
- data/generated/google/apis/servicenetworking_v1beta/representations.rb +2 -29
- data/generated/google/apis/servicenetworking_v1beta/service.rb +6 -6
- data/generated/google/apis/servicenetworking_v1beta.rb +1 -1
- data/generated/google/apis/serviceusage_v1/classes.rb +160 -109
- data/generated/google/apis/serviceusage_v1/representations.rb +42 -26
- data/generated/google/apis/serviceusage_v1/service.rb +17 -19
- data/generated/google/apis/serviceusage_v1.rb +1 -1
- data/generated/google/apis/serviceusage_v1beta1/classes.rb +161 -110
- data/generated/google/apis/serviceusage_v1beta1/representations.rb +42 -26
- data/generated/google/apis/serviceusage_v1beta1/service.rb +7 -7
- data/generated/google/apis/serviceusage_v1beta1.rb +1 -1
- data/generated/google/apis/sheets_v4/classes.rb +115 -26
- data/generated/google/apis/sheets_v4/service.rb +17 -17
- data/generated/google/apis/sheets_v4.rb +1 -1
- data/generated/google/apis/site_verification_v1/service.rb +7 -7
- data/generated/google/apis/slides_v1/classes.rb +2 -2
- data/generated/google/apis/slides_v1/service.rb +5 -5
- data/generated/google/apis/slides_v1.rb +1 -1
- data/generated/google/apis/sourcerepo_v1/classes.rb +183 -1
- data/generated/google/apis/sourcerepo_v1/representations.rb +45 -0
- data/generated/google/apis/sourcerepo_v1/service.rb +45 -10
- data/generated/google/apis/sourcerepo_v1.rb +1 -1
- data/generated/google/apis/spanner_v1/classes.rb +231 -17
- data/generated/google/apis/spanner_v1/representations.rb +66 -0
- data/generated/google/apis/spanner_v1/service.rb +92 -42
- data/generated/google/apis/spanner_v1.rb +1 -1
- data/generated/google/apis/speech_v1/classes.rb +110 -13
- data/generated/google/apis/speech_v1/representations.rb +24 -0
- data/generated/google/apis/speech_v1/service.rb +9 -7
- data/generated/google/apis/speech_v1.rb +1 -1
- data/generated/google/apis/speech_v1p1beta1/classes.rb +19 -13
- data/generated/google/apis/speech_v1p1beta1/representations.rb +1 -0
- data/generated/google/apis/speech_v1p1beta1/service.rb +9 -7
- data/generated/google/apis/speech_v1p1beta1.rb +1 -1
- data/generated/google/apis/sqladmin_v1beta4/classes.rb +94 -17
- data/generated/google/apis/sqladmin_v1beta4/representations.rb +36 -0
- data/generated/google/apis/sqladmin_v1beta4/service.rb +44 -44
- data/generated/google/apis/sqladmin_v1beta4.rb +1 -1
- data/generated/google/apis/storage_v1/classes.rb +201 -4
- data/generated/google/apis/storage_v1/representations.rb +76 -1
- data/generated/google/apis/storage_v1/service.rb +488 -93
- data/generated/google/apis/storage_v1.rb +1 -1
- data/generated/google/apis/storage_v1beta1/service.rb +24 -24
- data/generated/google/apis/storage_v1beta2/service.rb +34 -34
- data/generated/google/apis/storagetransfer_v1/classes.rb +44 -44
- data/generated/google/apis/storagetransfer_v1/service.rb +35 -36
- data/generated/google/apis/storagetransfer_v1.rb +2 -2
- data/generated/google/apis/streetviewpublish_v1/classes.rb +27 -27
- data/generated/google/apis/streetviewpublish_v1/service.rb +36 -40
- data/generated/google/apis/streetviewpublish_v1.rb +1 -1
- data/generated/google/apis/surveys_v2/service.rb +8 -8
- data/generated/google/apis/tagmanager_v1/service.rb +49 -95
- data/generated/google/apis/tagmanager_v1.rb +1 -1
- data/generated/google/apis/tagmanager_v2/classes.rb +197 -292
- data/generated/google/apis/tagmanager_v2/representations.rb +62 -103
- data/generated/google/apis/tagmanager_v2/service.rb +287 -249
- data/generated/google/apis/tagmanager_v2.rb +1 -1
- data/generated/google/apis/tasks_v1/service.rb +19 -19
- data/generated/google/apis/tasks_v1.rb +2 -2
- data/generated/google/apis/testing_v1/classes.rb +44 -39
- data/generated/google/apis/testing_v1/representations.rb +3 -1
- data/generated/google/apis/testing_v1/service.rb +5 -5
- data/generated/google/apis/testing_v1.rb +1 -1
- data/generated/google/apis/texttospeech_v1/service.rb +2 -2
- data/generated/google/apis/texttospeech_v1.rb +1 -1
- data/generated/google/apis/texttospeech_v1beta1/service.rb +2 -2
- data/generated/google/apis/texttospeech_v1beta1.rb +1 -1
- data/generated/google/apis/toolresults_v1beta3/classes.rb +340 -17
- data/generated/google/apis/toolresults_v1beta3/representations.rb +90 -0
- data/generated/google/apis/toolresults_v1beta3/service.rb +140 -24
- data/generated/google/apis/toolresults_v1beta3.rb +1 -1
- data/generated/google/apis/tpu_v1/classes.rb +21 -15
- data/generated/google/apis/tpu_v1/representations.rb +1 -0
- data/generated/google/apis/tpu_v1/service.rb +17 -17
- data/generated/google/apis/tpu_v1.rb +1 -1
- data/generated/google/apis/tpu_v1alpha1/classes.rb +21 -15
- data/generated/google/apis/tpu_v1alpha1/representations.rb +1 -0
- data/generated/google/apis/tpu_v1alpha1/service.rb +17 -17
- data/generated/google/apis/tpu_v1alpha1.rb +1 -1
- data/generated/google/apis/translate_v2/service.rb +5 -5
- data/generated/google/apis/urlshortener_v1/service.rb +3 -3
- data/generated/google/apis/vault_v1/classes.rb +44 -18
- data/generated/google/apis/vault_v1/representations.rb +4 -0
- data/generated/google/apis/vault_v1/service.rb +28 -28
- data/generated/google/apis/vault_v1.rb +1 -1
- data/generated/google/apis/videointelligence_v1/classes.rb +2193 -350
- data/generated/google/apis/videointelligence_v1/representations.rb +805 -6
- data/generated/google/apis/videointelligence_v1/service.rb +7 -6
- data/generated/google/apis/videointelligence_v1.rb +3 -2
- data/generated/google/apis/videointelligence_v1beta2/classes.rb +2448 -605
- data/generated/google/apis/videointelligence_v1beta2/representations.rb +806 -7
- data/generated/google/apis/videointelligence_v1beta2/service.rb +3 -2
- data/generated/google/apis/videointelligence_v1beta2.rb +3 -2
- data/generated/google/apis/videointelligence_v1p1beta1/classes.rb +2422 -579
- data/generated/google/apis/videointelligence_v1p1beta1/representations.rb +806 -7
- data/generated/google/apis/videointelligence_v1p1beta1/service.rb +3 -2
- data/generated/google/apis/videointelligence_v1p1beta1.rb +3 -2
- data/generated/google/apis/videointelligence_v1p2beta1/classes.rb +2645 -830
- data/generated/google/apis/videointelligence_v1p2beta1/representations.rb +796 -12
- data/generated/google/apis/videointelligence_v1p2beta1/service.rb +3 -2
- data/generated/google/apis/videointelligence_v1p2beta1.rb +3 -2
- data/generated/google/apis/videointelligence_v1p3beta1/classes.rb +4687 -0
- data/generated/google/apis/videointelligence_v1p3beta1/representations.rb +2005 -0
- data/generated/google/apis/videointelligence_v1p3beta1/service.rb +94 -0
- data/generated/google/apis/videointelligence_v1p3beta1.rb +36 -0
- data/generated/google/apis/vision_v1/classes.rb +4397 -124
- data/generated/google/apis/vision_v1/representations.rb +2366 -541
- data/generated/google/apis/vision_v1/service.rb +160 -33
- data/generated/google/apis/vision_v1.rb +1 -1
- data/generated/google/apis/vision_v1p1beta1/classes.rb +4451 -158
- data/generated/google/apis/vision_v1p1beta1/representations.rb +2415 -576
- data/generated/google/apis/vision_v1p1beta1/service.rb +73 -2
- data/generated/google/apis/vision_v1p1beta1.rb +1 -1
- data/generated/google/apis/vision_v1p2beta1/classes.rb +4451 -158
- data/generated/google/apis/vision_v1p2beta1/representations.rb +2443 -604
- data/generated/google/apis/vision_v1p2beta1/service.rb +73 -2
- data/generated/google/apis/vision_v1p2beta1.rb +1 -1
- data/generated/google/apis/webfonts_v1/service.rb +1 -1
- data/generated/google/apis/webmasters_v3/classes.rb +0 -166
- data/generated/google/apis/webmasters_v3/representations.rb +0 -93
- data/generated/google/apis/webmasters_v3/service.rb +9 -180
- data/generated/google/apis/webmasters_v3.rb +1 -1
- data/generated/google/apis/websecurityscanner_v1alpha/service.rb +13 -13
- data/generated/google/apis/websecurityscanner_v1beta/classes.rb +973 -0
- data/generated/google/apis/websecurityscanner_v1beta/representations.rb +452 -0
- data/generated/google/apis/websecurityscanner_v1beta/service.rb +548 -0
- data/generated/google/apis/websecurityscanner_v1beta.rb +34 -0
- data/generated/google/apis/youtube_analytics_v1/service.rb +8 -8
- data/generated/google/apis/youtube_analytics_v1beta1/service.rb +8 -8
- data/generated/google/apis/youtube_analytics_v2/service.rb +8 -8
- data/generated/google/apis/youtube_partner_v1/classes.rb +15 -34
- data/generated/google/apis/youtube_partner_v1/representations.rb +4 -17
- data/generated/google/apis/youtube_partner_v1/service.rb +74 -74
- data/generated/google/apis/youtube_partner_v1.rb +1 -1
- data/generated/google/apis/youtube_v3/service.rb +71 -71
- data/generated/google/apis/youtube_v3.rb +1 -1
- data/generated/google/apis/youtubereporting_v1/classes.rb +2 -2
- data/generated/google/apis/youtubereporting_v1/service.rb +8 -8
- data/generated/google/apis/youtubereporting_v1.rb +1 -1
- data/google-api-client.gemspec +2 -2
- data/lib/google/apis/core/http_command.rb +1 -0
- data/lib/google/apis/core/json_representation.rb +4 -0
- data/lib/google/apis/core/upload.rb +3 -3
- data/lib/google/apis/generator/model.rb +1 -1
- data/lib/google/apis/generator/templates/_method.tmpl +3 -3
- data/lib/google/apis/version.rb +1 -1
- metadata +86 -17
- data/.kokoro/common.cfg +0 -22
- data/.kokoro/windows.sh +0 -32
- data/generated/google/apis/logging_v2beta1/classes.rb +0 -1765
- data/generated/google/apis/logging_v2beta1/representations.rb +0 -537
- data/generated/google/apis/logging_v2beta1/service.rb +0 -570
- data/generated/google/apis/logging_v2beta1.rb +0 -46
- data/generated/google/apis/partners_v2/classes.rb +0 -2260
- data/generated/google/apis/partners_v2/representations.rb +0 -905
- data/generated/google/apis/partners_v2/service.rb +0 -1077
- data/samples/web/.env +0 -2
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module Apis
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module GenomicsV1
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# An annotation describes a region of reference genome. The value of an
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# annotation may be one of several canonical types, supplemented by arbitrary
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# info tags. An annotation is not inherently associated with a specific
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# sample or individual (though a client could choose to use annotations in
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# this way). Example canonical annotation types are `GENE` and
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# `VARIANT`.
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class Annotation
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include Google::Apis::Core::Hashable
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# The annotation set to which this annotation belongs.
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# Corresponds to the JSON property `annotationSetId`
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# @return [String]
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attr_accessor :annotation_set_id
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# The end position of the range on the reference, 0-based exclusive.
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# Corresponds to the JSON property `end`
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# @return [Fixnum]
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attr_accessor :end
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# The server-generated annotation ID, unique across all annotations.
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# Corresponds to the JSON property `id`
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# @return [String]
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attr_accessor :id
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# A map of additional read alignment information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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# Corresponds to the JSON property `info`
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# @return [Hash<String,Array<Object>>]
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attr_accessor :info
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# The display name of this annotation.
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# Corresponds to the JSON property `name`
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# @return [String]
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attr_accessor :name
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# The ID of the Google Genomics reference associated with this range.
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# Corresponds to the JSON property `referenceId`
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# @return [String]
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attr_accessor :reference_id
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# The display name corresponding to the reference specified by
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# `referenceId`, for example `chr1`, `1`, or `chrX`.
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# Corresponds to the JSON property `referenceName`
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# @return [String]
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attr_accessor :reference_name
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# Whether this range refers to the reverse strand, as opposed to the forward
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# strand. Note that regardless of this field, the start/end position of the
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# range always refer to the forward strand.
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# Corresponds to the JSON property `reverseStrand`
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# @return [Boolean]
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attr_accessor :reverse_strand
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alias_method :reverse_strand?, :reverse_strand
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# The start position of the range on the reference, 0-based inclusive.
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# Corresponds to the JSON property `start`
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# @return [Fixnum]
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attr_accessor :start
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# A transcript represents the assertion that a particular region of the
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# reference genome may be transcribed as RNA.
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# Corresponds to the JSON property `transcript`
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# @return [Google::Apis::GenomicsV1::Transcript]
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attr_accessor :transcript
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# The data type for this annotation. Must match the containing annotation
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# set's type.
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# Corresponds to the JSON property `type`
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# @return [String]
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attr_accessor :type
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# A variant annotation, which describes the effect of a variant on the
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# genome, the coding sequence, and/or higher level consequences at the
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# organism level e.g. pathogenicity. This field is only set for annotations
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# of type `VARIANT`.
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# Corresponds to the JSON property `variant`
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# @return [Google::Apis::GenomicsV1::VariantAnnotation]
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attr_accessor :variant
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@annotation_set_id = args[:annotation_set_id] if args.key?(:annotation_set_id)
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@end = args[:end] if args.key?(:end)
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@id = args[:id] if args.key?(:id)
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@info = args[:info] if args.key?(:info)
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@name = args[:name] if args.key?(:name)
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@reference_id = args[:reference_id] if args.key?(:reference_id)
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@reference_name = args[:reference_name] if args.key?(:reference_name)
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@reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
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@start = args[:start] if args.key?(:start)
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@transcript = args[:transcript] if args.key?(:transcript)
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@type = args[:type] if args.key?(:type)
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@variant = args[:variant] if args.key?(:variant)
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end
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end
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# An annotation set is a logical grouping of annotations that share consistent
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# type information and provenance. Examples of annotation sets include 'all
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# genes from refseq', and 'all variant annotations from ClinVar'.
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class AnnotationSet
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include Google::Apis::Core::Hashable
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# The dataset to which this annotation set belongs.
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# Corresponds to the JSON property `datasetId`
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# @return [String]
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attr_accessor :dataset_id
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# The server-generated annotation set ID, unique across all annotation sets.
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# Corresponds to the JSON property `id`
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# @return [String]
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attr_accessor :id
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# A map of additional read alignment information. This must be of the form
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# map<string, string[]> (string key mapping to a list of string values).
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# Corresponds to the JSON property `info`
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# @return [Hash<String,Array<Object>>]
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attr_accessor :info
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# The display name for this annotation set.
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# Corresponds to the JSON property `name`
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# @return [String]
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attr_accessor :name
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# The ID of the reference set that defines the coordinate space for this
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# set's annotations.
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# Corresponds to the JSON property `referenceSetId`
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attr_accessor :reference_set_id
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# The source URI describing the file from which this annotation set was
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# generated, if any.
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attr_accessor :source_uri
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# The type of annotations contained within this set.
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# Corresponds to the JSON property `type`
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attr_accessor :type
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def initialize(**args)
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end
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# Update properties of this object
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def update!(**args)
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@name = args[:name] if args.key?(:name)
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@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
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@source_uri = args[:source_uri] if args.key?(:source_uri)
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end
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end
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#
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class BatchCreateAnnotationsRequest
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include Google::Apis::Core::Hashable
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# The annotations to be created. At most 4096 can be specified in a single
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# request.
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# Corresponds to the JSON property `annotations`
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# @return [Array<Google::Apis::GenomicsV1::Annotation>]
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attr_accessor :annotations
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# A unique request ID which enables the server to detect duplicated requests.
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# If provided, duplicated requests will result in the same response; if not
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# provided, duplicated requests may result in duplicated data. For a given
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# Corresponds to the JSON property `requestId`
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attr_accessor :request_id
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# Update properties of this object
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#
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class BatchCreateAnnotationsResponse
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# The resulting per-annotation entries, ordered consistently with the
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# original request.
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# Corresponds to the JSON property `entries`
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attr_accessor :entries
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end
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end
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# Associates `members` with a `role`.
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class Binding
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include Google::Apis::Core::Hashable
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# Represents an expression text. Example:
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# title: "User account presence"
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# description: "Determines whether the request has a user account"
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# expression: "size(request.user) > 0"
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# Corresponds to the JSON property `condition`
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# @return [Google::Apis::GenomicsV1::Expr]
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attr_accessor :condition
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# Specifies the identities requesting access for a Cloud Platform resource.
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# `members` can have the following values:
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# * `allUsers`: A special identifier that represents anyone who is
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# on the internet; with or without a Google account.
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# * `allAuthenticatedUsers`: A special identifier that represents anyone
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# who is authenticated with a Google account or a service account.
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# * `user:`emailid``: An email address that represents a specific Google
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# account. For example, `alice@gmail.com` .
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# * `serviceAccount:`emailid``: An email address that represents a service
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# account. For example, `my-other-app@appspot.gserviceaccount.com`.
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# * `group:`emailid``: An email address that represents a Google group.
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# For example, `admins@example.com`.
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# * `domain:`domain``: A Google Apps domain name that represents all the
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# users of that domain. For example, `google.com` or `example.com`.
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# Corresponds to the JSON property `members`
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# @return [Array<String>]
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attr_accessor :members
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# Role that is assigned to `members`.
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# For example, `roles/viewer`, `roles/editor`, or `roles/owner`.
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# Corresponds to the JSON property `role`
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# @return [String]
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attr_accessor :role
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update!(**args)
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end
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# Update properties of this object
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@role = args[:role] if args.key?(:role)
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end
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end
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|
-
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# A call set is a collection of variant calls, typically for one sample. It
|
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-
# belongs to a variant set.
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class CallSet
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-
include Google::Apis::Core::Hashable
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|
-
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# The date this call set was created in milliseconds from the epoch.
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# Corresponds to the JSON property `created`
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# @return [Fixnum]
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attr_accessor :created
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|
-
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|
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# The server-generated call set ID, unique across all call sets.
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# Corresponds to the JSON property `id`
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# @return [String]
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attr_accessor :id
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|
-
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|
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# A map of additional call set information. This must be of the form
|
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|
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# map<string, string[]> (string key mapping to a list of string values).
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|
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# Corresponds to the JSON property `info`
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|
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# @return [Hash<String,Array<Object>>]
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attr_accessor :info
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305
|
-
|
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306
|
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# The call set name.
|
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|
-
# Corresponds to the JSON property `name`
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# @return [String]
|
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|
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attr_accessor :name
|
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|
-
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311
|
-
# The sample ID this call set corresponds to.
|
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|
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# Corresponds to the JSON property `sampleId`
|
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|
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# @return [String]
|
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|
-
attr_accessor :sample_id
|
|
315
|
-
|
|
316
|
-
# The IDs of the variant sets this call set belongs to. This field must
|
|
317
|
-
# have exactly length one, as a call set belongs to a single variant set.
|
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|
-
# This field is repeated for compatibility with the
|
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|
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# [GA4GH 0.5.1
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# API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/
|
|
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|
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# variants.avdl#L76).
|
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|
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# Corresponds to the JSON property `variantSetIds`
|
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323
|
-
# @return [Array<String>]
|
|
324
|
-
attr_accessor :variant_set_ids
|
|
325
|
-
|
|
326
|
-
def initialize(**args)
|
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327
|
-
update!(**args)
|
|
328
|
-
end
|
|
329
|
-
|
|
330
|
-
# Update properties of this object
|
|
331
|
-
def update!(**args)
|
|
332
|
-
@created = args[:created] if args.key?(:created)
|
|
333
|
-
@id = args[:id] if args.key?(:id)
|
|
334
|
-
@info = args[:info] if args.key?(:info)
|
|
335
|
-
@name = args[:name] if args.key?(:name)
|
|
336
|
-
@sample_id = args[:sample_id] if args.key?(:sample_id)
|
|
337
|
-
@variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
|
|
338
|
-
end
|
|
339
|
-
end
|
|
340
|
-
|
|
341
25
|
# The request message for Operations.CancelOperation.
|
|
342
26
|
class CancelOperationRequest
|
|
343
27
|
include Google::Apis::Core::Hashable
|
|
@@ -351,108 +35,6 @@ module Google
|
|
|
351
35
|
end
|
|
352
36
|
end
|
|
353
37
|
|
|
354
|
-
# A single CIGAR operation.
|
|
355
|
-
class CigarUnit
|
|
356
|
-
include Google::Apis::Core::Hashable
|
|
357
|
-
|
|
358
|
-
#
|
|
359
|
-
# Corresponds to the JSON property `operation`
|
|
360
|
-
# @return [String]
|
|
361
|
-
attr_accessor :operation
|
|
362
|
-
|
|
363
|
-
# The number of genomic bases that the operation runs for. Required.
|
|
364
|
-
# Corresponds to the JSON property `operationLength`
|
|
365
|
-
# @return [Fixnum]
|
|
366
|
-
attr_accessor :operation_length
|
|
367
|
-
|
|
368
|
-
# `referenceSequence` is only used at mismatches
|
|
369
|
-
# (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
|
|
370
|
-
# Filling this field replaces SAM's MD tag. If the relevant information is
|
|
371
|
-
# not available, this field is unset.
|
|
372
|
-
# Corresponds to the JSON property `referenceSequence`
|
|
373
|
-
# @return [String]
|
|
374
|
-
attr_accessor :reference_sequence
|
|
375
|
-
|
|
376
|
-
def initialize(**args)
|
|
377
|
-
update!(**args)
|
|
378
|
-
end
|
|
379
|
-
|
|
380
|
-
# Update properties of this object
|
|
381
|
-
def update!(**args)
|
|
382
|
-
@operation = args[:operation] if args.key?(:operation)
|
|
383
|
-
@operation_length = args[:operation_length] if args.key?(:operation_length)
|
|
384
|
-
@reference_sequence = args[:reference_sequence] if args.key?(:reference_sequence)
|
|
385
|
-
end
|
|
386
|
-
end
|
|
387
|
-
|
|
388
|
-
#
|
|
389
|
-
class ClinicalCondition
|
|
390
|
-
include Google::Apis::Core::Hashable
|
|
391
|
-
|
|
392
|
-
# The MedGen concept id associated with this gene.
|
|
393
|
-
# Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
|
|
394
|
-
# Corresponds to the JSON property `conceptId`
|
|
395
|
-
# @return [String]
|
|
396
|
-
attr_accessor :concept_id
|
|
397
|
-
|
|
398
|
-
# The set of external IDs for this condition.
|
|
399
|
-
# Corresponds to the JSON property `externalIds`
|
|
400
|
-
# @return [Array<Google::Apis::GenomicsV1::ExternalId>]
|
|
401
|
-
attr_accessor :external_ids
|
|
402
|
-
|
|
403
|
-
# A set of names for the condition.
|
|
404
|
-
# Corresponds to the JSON property `names`
|
|
405
|
-
# @return [Array<String>]
|
|
406
|
-
attr_accessor :names
|
|
407
|
-
|
|
408
|
-
# The OMIM id for this condition.
|
|
409
|
-
# Search for these IDs at http://omim.org/
|
|
410
|
-
# Corresponds to the JSON property `omimId`
|
|
411
|
-
# @return [String]
|
|
412
|
-
attr_accessor :omim_id
|
|
413
|
-
|
|
414
|
-
def initialize(**args)
|
|
415
|
-
update!(**args)
|
|
416
|
-
end
|
|
417
|
-
|
|
418
|
-
# Update properties of this object
|
|
419
|
-
def update!(**args)
|
|
420
|
-
@concept_id = args[:concept_id] if args.key?(:concept_id)
|
|
421
|
-
@external_ids = args[:external_ids] if args.key?(:external_ids)
|
|
422
|
-
@names = args[:names] if args.key?(:names)
|
|
423
|
-
@omim_id = args[:omim_id] if args.key?(:omim_id)
|
|
424
|
-
end
|
|
425
|
-
end
|
|
426
|
-
|
|
427
|
-
#
|
|
428
|
-
class CodingSequence
|
|
429
|
-
include Google::Apis::Core::Hashable
|
|
430
|
-
|
|
431
|
-
# The end of the coding sequence on this annotation's reference sequence,
|
|
432
|
-
# 0-based exclusive. Note that this position is relative to the reference
|
|
433
|
-
# start, and *not* the containing annotation start.
|
|
434
|
-
# Corresponds to the JSON property `end`
|
|
435
|
-
# @return [Fixnum]
|
|
436
|
-
attr_accessor :end
|
|
437
|
-
|
|
438
|
-
# The start of the coding sequence on this annotation's reference sequence,
|
|
439
|
-
# 0-based inclusive. Note that this position is relative to the reference
|
|
440
|
-
# start, and *not* the containing annotation start.
|
|
441
|
-
# Corresponds to the JSON property `start`
|
|
442
|
-
# @return [Fixnum]
|
|
443
|
-
attr_accessor :start
|
|
444
|
-
|
|
445
|
-
def initialize(**args)
|
|
446
|
-
update!(**args)
|
|
447
|
-
end
|
|
448
|
-
|
|
449
|
-
# Update properties of this object
|
|
450
|
-
def update!(**args)
|
|
451
|
-
@end = args[:end] if args.key?(:end)
|
|
452
|
-
@start = args[:start] if args.key?(:start)
|
|
453
|
-
end
|
|
454
|
-
end
|
|
455
|
-
|
|
456
38
|
# Describes a Compute Engine resource that is being managed by a running
|
|
457
39
|
# pipeline.
|
|
458
40
|
class ComputeEngine
|
|
@@ -585,70 +167,6 @@ module Google
|
|
|
585
167
|
end
|
|
586
168
|
end
|
|
587
169
|
|
|
588
|
-
# A bucket over which read coverage has been precomputed. A bucket corresponds
|
|
589
|
-
# to a specific range of the reference sequence.
|
|
590
|
-
class CoverageBucket
|
|
591
|
-
include Google::Apis::Core::Hashable
|
|
592
|
-
|
|
593
|
-
# The average number of reads which are aligned to each individual
|
|
594
|
-
# reference base in this bucket.
|
|
595
|
-
# Corresponds to the JSON property `meanCoverage`
|
|
596
|
-
# @return [Float]
|
|
597
|
-
attr_accessor :mean_coverage
|
|
598
|
-
|
|
599
|
-
# A 0-based half-open genomic coordinate range for search requests.
|
|
600
|
-
# Corresponds to the JSON property `range`
|
|
601
|
-
# @return [Google::Apis::GenomicsV1::Range]
|
|
602
|
-
attr_accessor :range
|
|
603
|
-
|
|
604
|
-
def initialize(**args)
|
|
605
|
-
update!(**args)
|
|
606
|
-
end
|
|
607
|
-
|
|
608
|
-
# Update properties of this object
|
|
609
|
-
def update!(**args)
|
|
610
|
-
@mean_coverage = args[:mean_coverage] if args.key?(:mean_coverage)
|
|
611
|
-
@range = args[:range] if args.key?(:range)
|
|
612
|
-
end
|
|
613
|
-
end
|
|
614
|
-
|
|
615
|
-
# A Dataset is a collection of genomic data.
|
|
616
|
-
class Dataset
|
|
617
|
-
include Google::Apis::Core::Hashable
|
|
618
|
-
|
|
619
|
-
# The time this dataset was created, in seconds from the epoch.
|
|
620
|
-
# Corresponds to the JSON property `createTime`
|
|
621
|
-
# @return [String]
|
|
622
|
-
attr_accessor :create_time
|
|
623
|
-
|
|
624
|
-
# The server-generated dataset ID, unique across all datasets.
|
|
625
|
-
# Corresponds to the JSON property `id`
|
|
626
|
-
# @return [String]
|
|
627
|
-
attr_accessor :id
|
|
628
|
-
|
|
629
|
-
# The dataset name.
|
|
630
|
-
# Corresponds to the JSON property `name`
|
|
631
|
-
# @return [String]
|
|
632
|
-
attr_accessor :name
|
|
633
|
-
|
|
634
|
-
# The Google Cloud project ID that this dataset belongs to.
|
|
635
|
-
# Corresponds to the JSON property `projectId`
|
|
636
|
-
# @return [String]
|
|
637
|
-
attr_accessor :project_id
|
|
638
|
-
|
|
639
|
-
def initialize(**args)
|
|
640
|
-
update!(**args)
|
|
641
|
-
end
|
|
642
|
-
|
|
643
|
-
# Update properties of this object
|
|
644
|
-
def update!(**args)
|
|
645
|
-
@create_time = args[:create_time] if args.key?(:create_time)
|
|
646
|
-
@id = args[:id] if args.key?(:id)
|
|
647
|
-
@name = args[:name] if args.key?(:name)
|
|
648
|
-
@project_id = args[:project_id] if args.key?(:project_id)
|
|
649
|
-
end
|
|
650
|
-
end
|
|
651
|
-
|
|
652
170
|
# An event generated whenever a resource limitation or transient error
|
|
653
171
|
# delays execution of a pipeline that was otherwise ready to run.
|
|
654
172
|
class DelayedEvent
|
|
@@ -699,76 +217,8 @@ module Google
|
|
|
699
217
|
end
|
|
700
218
|
end
|
|
701
219
|
|
|
702
|
-
#
|
|
703
|
-
class
|
|
704
|
-
include Google::Apis::Core::Hashable
|
|
705
|
-
|
|
706
|
-
# An annotation describes a region of reference genome. The value of an
|
|
707
|
-
# annotation may be one of several canonical types, supplemented by arbitrary
|
|
708
|
-
# info tags. An annotation is not inherently associated with a specific
|
|
709
|
-
# sample or individual (though a client could choose to use annotations in
|
|
710
|
-
# this way). Example canonical annotation types are `GENE` and
|
|
711
|
-
# `VARIANT`.
|
|
712
|
-
# Corresponds to the JSON property `annotation`
|
|
713
|
-
# @return [Google::Apis::GenomicsV1::Annotation]
|
|
714
|
-
attr_accessor :annotation
|
|
715
|
-
|
|
716
|
-
# The `Status` type defines a logical error model that is suitable for different
|
|
717
|
-
# programming environments, including REST APIs and RPC APIs. It is used by
|
|
718
|
-
# [gRPC](https://github.com/grpc). The error model is designed to be:
|
|
719
|
-
# - Simple to use and understand for most users
|
|
720
|
-
# - Flexible enough to meet unexpected needs
|
|
721
|
-
# # Overview
|
|
722
|
-
# The `Status` message contains three pieces of data: error code, error message,
|
|
723
|
-
# and error details. The error code should be an enum value of
|
|
724
|
-
# google.rpc.Code, but it may accept additional error codes if needed. The
|
|
725
|
-
# error message should be a developer-facing English message that helps
|
|
726
|
-
# developers *understand* and *resolve* the error. If a localized user-facing
|
|
727
|
-
# error message is needed, put the localized message in the error details or
|
|
728
|
-
# localize it in the client. The optional error details may contain arbitrary
|
|
729
|
-
# information about the error. There is a predefined set of error detail types
|
|
730
|
-
# in the package `google.rpc` that can be used for common error conditions.
|
|
731
|
-
# # Language mapping
|
|
732
|
-
# The `Status` message is the logical representation of the error model, but it
|
|
733
|
-
# is not necessarily the actual wire format. When the `Status` message is
|
|
734
|
-
# exposed in different client libraries and different wire protocols, it can be
|
|
735
|
-
# mapped differently. For example, it will likely be mapped to some exceptions
|
|
736
|
-
# in Java, but more likely mapped to some error codes in C.
|
|
737
|
-
# # Other uses
|
|
738
|
-
# The error model and the `Status` message can be used in a variety of
|
|
739
|
-
# environments, either with or without APIs, to provide a
|
|
740
|
-
# consistent developer experience across different environments.
|
|
741
|
-
# Example uses of this error model include:
|
|
742
|
-
# - Partial errors. If a service needs to return partial errors to the client,
|
|
743
|
-
# it may embed the `Status` in the normal response to indicate the partial
|
|
744
|
-
# errors.
|
|
745
|
-
# - Workflow errors. A typical workflow has multiple steps. Each step may
|
|
746
|
-
# have a `Status` message for error reporting.
|
|
747
|
-
# - Batch operations. If a client uses batch request and batch response, the
|
|
748
|
-
# `Status` message should be used directly inside batch response, one for
|
|
749
|
-
# each error sub-response.
|
|
750
|
-
# - Asynchronous operations. If an API call embeds asynchronous operation
|
|
751
|
-
# results in its response, the status of those operations should be
|
|
752
|
-
# represented directly using the `Status` message.
|
|
753
|
-
# - Logging. If some API errors are stored in logs, the message `Status` could
|
|
754
|
-
# be used directly after any stripping needed for security/privacy reasons.
|
|
755
|
-
# Corresponds to the JSON property `status`
|
|
756
|
-
# @return [Google::Apis::GenomicsV1::Status]
|
|
757
|
-
attr_accessor :status
|
|
758
|
-
|
|
759
|
-
def initialize(**args)
|
|
760
|
-
update!(**args)
|
|
761
|
-
end
|
|
762
|
-
|
|
763
|
-
# Update properties of this object
|
|
764
|
-
def update!(**args)
|
|
765
|
-
@annotation = args[:annotation] if args.key?(:annotation)
|
|
766
|
-
@status = args[:status] if args.key?(:status)
|
|
767
|
-
end
|
|
768
|
-
end
|
|
769
|
-
|
|
770
|
-
# Carries information about events that occur during pipeline execution.
|
|
771
|
-
class Event
|
|
220
|
+
# Carries information about events that occur during pipeline execution.
|
|
221
|
+
class Event
|
|
772
222
|
include Google::Apis::Core::Hashable
|
|
773
223
|
|
|
774
224
|
# A human-readable description of the event. Note that these strings can
|
|
@@ -800,81 +250,20 @@ module Google
|
|
|
800
250
|
end
|
|
801
251
|
end
|
|
802
252
|
|
|
803
|
-
#
|
|
804
|
-
|
|
805
|
-
|
|
806
|
-
|
|
807
|
-
# The end position of the exon on this annotation's reference sequence,
|
|
808
|
-
# 0-based exclusive. Note that this is relative to the reference start, and
|
|
809
|
-
# *not* the containing annotation start.
|
|
810
|
-
# Corresponds to the JSON property `end`
|
|
811
|
-
# @return [Fixnum]
|
|
812
|
-
attr_accessor :end
|
|
813
|
-
|
|
814
|
-
# The frame of this exon. Contains a value of 0, 1, or 2, which indicates
|
|
815
|
-
# the offset of the first coding base of the exon within the reading frame
|
|
816
|
-
# of the coding DNA sequence, if any. This field is dependent on the
|
|
817
|
-
# strandedness of this annotation (see
|
|
818
|
-
# Annotation.reverse_strand).
|
|
819
|
-
# For forward stranded annotations, this offset is relative to the
|
|
820
|
-
# exon.start. For reverse
|
|
821
|
-
# strand annotations, this offset is relative to the
|
|
822
|
-
# exon.end `- 1`.
|
|
823
|
-
# Unset if this exon does not intersect the coding sequence. Upon creation
|
|
824
|
-
# of a transcript, the frame must be populated for all or none of the
|
|
825
|
-
# coding exons.
|
|
826
|
-
# Corresponds to the JSON property `frame`
|
|
827
|
-
# @return [Fixnum]
|
|
828
|
-
attr_accessor :frame
|
|
829
|
-
|
|
830
|
-
# The start position of the exon on this annotation's reference sequence,
|
|
831
|
-
# 0-based inclusive. Note that this is relative to the reference start, and
|
|
832
|
-
# **not** the containing annotation start.
|
|
833
|
-
# Corresponds to the JSON property `start`
|
|
834
|
-
# @return [Fixnum]
|
|
835
|
-
attr_accessor :start
|
|
836
|
-
|
|
837
|
-
def initialize(**args)
|
|
838
|
-
update!(**args)
|
|
839
|
-
end
|
|
840
|
-
|
|
841
|
-
# Update properties of this object
|
|
842
|
-
def update!(**args)
|
|
843
|
-
@end = args[:end] if args.key?(:end)
|
|
844
|
-
@frame = args[:frame] if args.key?(:frame)
|
|
845
|
-
@start = args[:start] if args.key?(:start)
|
|
846
|
-
end
|
|
847
|
-
end
|
|
848
|
-
|
|
849
|
-
#
|
|
850
|
-
class Experiment
|
|
253
|
+
# An event generated when the execution of a pipeline has failed. Note
|
|
254
|
+
# that other events can continue to occur after this event.
|
|
255
|
+
class FailedEvent
|
|
851
256
|
include Google::Apis::Core::Hashable
|
|
852
257
|
|
|
853
|
-
# The
|
|
854
|
-
#
|
|
855
|
-
# Corresponds to the JSON property `instrumentModel`
|
|
856
|
-
# @return [String]
|
|
857
|
-
attr_accessor :instrument_model
|
|
858
|
-
|
|
859
|
-
# A client-supplied library identifier; a library is a collection of DNA
|
|
860
|
-
# fragments which have been prepared for sequencing from a sample. This
|
|
861
|
-
# field is important for quality control as error or bias can be introduced
|
|
862
|
-
# during sample preparation.
|
|
863
|
-
# Corresponds to the JSON property `libraryId`
|
|
864
|
-
# @return [String]
|
|
865
|
-
attr_accessor :library_id
|
|
866
|
-
|
|
867
|
-
# The platform unit used as part of this experiment, for example
|
|
868
|
-
# flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
|
|
869
|
-
# @RG PU field in the SAM spec.
|
|
870
|
-
# Corresponds to the JSON property `platformUnit`
|
|
258
|
+
# The human-readable description of the cause of the failure.
|
|
259
|
+
# Corresponds to the JSON property `cause`
|
|
871
260
|
# @return [String]
|
|
872
|
-
attr_accessor :
|
|
261
|
+
attr_accessor :cause
|
|
873
262
|
|
|
874
|
-
# The
|
|
875
|
-
# Corresponds to the JSON property `
|
|
263
|
+
# The Google standard error code that best describes this failure.
|
|
264
|
+
# Corresponds to the JSON property `code`
|
|
876
265
|
# @return [String]
|
|
877
|
-
attr_accessor :
|
|
266
|
+
attr_accessor :code
|
|
878
267
|
|
|
879
268
|
def initialize(**args)
|
|
880
269
|
update!(**args)
|
|
@@ -882,36 +271,24 @@ module Google
|
|
|
882
271
|
|
|
883
272
|
# Update properties of this object
|
|
884
273
|
def update!(**args)
|
|
885
|
-
@
|
|
886
|
-
@
|
|
887
|
-
@platform_unit = args[:platform_unit] if args.key?(:platform_unit)
|
|
888
|
-
@sequencing_center = args[:sequencing_center] if args.key?(:sequencing_center)
|
|
274
|
+
@cause = args[:cause] if args.key?(:cause)
|
|
275
|
+
@code = args[:code] if args.key?(:code)
|
|
889
276
|
end
|
|
890
277
|
end
|
|
891
278
|
|
|
892
|
-
# The
|
|
893
|
-
class
|
|
279
|
+
# The response message for Operations.ListOperations.
|
|
280
|
+
class ListOperationsResponse
|
|
894
281
|
include Google::Apis::Core::Hashable
|
|
895
282
|
|
|
896
|
-
#
|
|
897
|
-
#
|
|
898
|
-
# An error will be returned if the URI already contains data.
|
|
899
|
-
# Corresponds to the JSON property `exportUri`
|
|
900
|
-
# @return [String]
|
|
901
|
-
attr_accessor :export_uri
|
|
902
|
-
|
|
903
|
-
# Required. The Google Cloud project ID that owns this
|
|
904
|
-
# export. The caller must have WRITE access to this project.
|
|
905
|
-
# Corresponds to the JSON property `projectId`
|
|
283
|
+
# The standard List next-page token.
|
|
284
|
+
# Corresponds to the JSON property `nextPageToken`
|
|
906
285
|
# @return [String]
|
|
907
|
-
attr_accessor :
|
|
286
|
+
attr_accessor :next_page_token
|
|
908
287
|
|
|
909
|
-
#
|
|
910
|
-
#
|
|
911
|
-
#
|
|
912
|
-
|
|
913
|
-
# @return [Array<String>]
|
|
914
|
-
attr_accessor :reference_names
|
|
288
|
+
# A list of operations that matches the specified filter in the request.
|
|
289
|
+
# Corresponds to the JSON property `operations`
|
|
290
|
+
# @return [Array<Google::Apis::GenomicsV1::Operation>]
|
|
291
|
+
attr_accessor :operations
|
|
915
292
|
|
|
916
293
|
def initialize(**args)
|
|
917
294
|
update!(**args)
|
|
@@ -919,46 +296,84 @@ module Google
|
|
|
919
296
|
|
|
920
297
|
# Update properties of this object
|
|
921
298
|
def update!(**args)
|
|
922
|
-
@
|
|
923
|
-
@
|
|
924
|
-
@reference_names = args[:reference_names] if args.key?(:reference_names)
|
|
299
|
+
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
300
|
+
@operations = args[:operations] if args.key?(:operations)
|
|
925
301
|
end
|
|
926
302
|
end
|
|
927
303
|
|
|
928
|
-
#
|
|
929
|
-
|
|
304
|
+
# This resource represents a long-running operation that is the result of a
|
|
305
|
+
# network API call.
|
|
306
|
+
class Operation
|
|
930
307
|
include Google::Apis::Core::Hashable
|
|
931
308
|
|
|
932
|
-
#
|
|
933
|
-
#
|
|
934
|
-
#
|
|
935
|
-
#
|
|
936
|
-
|
|
309
|
+
# If the value is `false`, it means the operation is still in progress.
|
|
310
|
+
# If `true`, the operation is completed, and either `error` or `response` is
|
|
311
|
+
# available.
|
|
312
|
+
# Corresponds to the JSON property `done`
|
|
313
|
+
# @return [Boolean]
|
|
314
|
+
attr_accessor :done
|
|
315
|
+
alias_method :done?, :done
|
|
937
316
|
|
|
938
|
-
#
|
|
939
|
-
#
|
|
940
|
-
#
|
|
941
|
-
#
|
|
942
|
-
#
|
|
943
|
-
|
|
317
|
+
# The `Status` type defines a logical error model that is suitable for
|
|
318
|
+
# different programming environments, including REST APIs and RPC APIs. It is
|
|
319
|
+
# used by [gRPC](https://github.com/grpc). The error model is designed to be:
|
|
320
|
+
# - Simple to use and understand for most users
|
|
321
|
+
# - Flexible enough to meet unexpected needs
|
|
322
|
+
# # Overview
|
|
323
|
+
# The `Status` message contains three pieces of data: error code, error
|
|
324
|
+
# message, and error details. The error code should be an enum value of
|
|
325
|
+
# google.rpc.Code, but it may accept additional error codes if needed. The
|
|
326
|
+
# error message should be a developer-facing English message that helps
|
|
327
|
+
# developers *understand* and *resolve* the error. If a localized user-facing
|
|
328
|
+
# error message is needed, put the localized message in the error details or
|
|
329
|
+
# localize it in the client. The optional error details may contain arbitrary
|
|
330
|
+
# information about the error. There is a predefined set of error detail types
|
|
331
|
+
# in the package `google.rpc` that can be used for common error conditions.
|
|
332
|
+
# # Language mapping
|
|
333
|
+
# The `Status` message is the logical representation of the error model, but it
|
|
334
|
+
# is not necessarily the actual wire format. When the `Status` message is
|
|
335
|
+
# exposed in different client libraries and different wire protocols, it can be
|
|
336
|
+
# mapped differently. For example, it will likely be mapped to some exceptions
|
|
337
|
+
# in Java, but more likely mapped to some error codes in C.
|
|
338
|
+
# # Other uses
|
|
339
|
+
# The error model and the `Status` message can be used in a variety of
|
|
340
|
+
# environments, either with or without APIs, to provide a
|
|
341
|
+
# consistent developer experience across different environments.
|
|
342
|
+
# Example uses of this error model include:
|
|
343
|
+
# - Partial errors. If a service needs to return partial errors to the client,
|
|
344
|
+
# it may embed the `Status` in the normal response to indicate the partial
|
|
345
|
+
# errors.
|
|
346
|
+
# - Workflow errors. A typical workflow has multiple steps. Each step may
|
|
347
|
+
# have a `Status` message for error reporting.
|
|
348
|
+
# - Batch operations. If a client uses batch request and batch response, the
|
|
349
|
+
# `Status` message should be used directly inside batch response, one for
|
|
350
|
+
# each error sub-response.
|
|
351
|
+
# - Asynchronous operations. If an API call embeds asynchronous operation
|
|
352
|
+
# results in its response, the status of those operations should be
|
|
353
|
+
# represented directly using the `Status` message.
|
|
354
|
+
# - Logging. If some API errors are stored in logs, the message `Status` could
|
|
355
|
+
# be used directly after any stripping needed for security/privacy reasons.
|
|
356
|
+
# Corresponds to the JSON property `error`
|
|
357
|
+
# @return [Google::Apis::GenomicsV1::Status]
|
|
358
|
+
attr_accessor :error
|
|
944
359
|
|
|
945
|
-
#
|
|
946
|
-
#
|
|
947
|
-
# Corresponds to the JSON property `
|
|
948
|
-
# @return [
|
|
949
|
-
attr_accessor :
|
|
360
|
+
# An OperationMetadata or Metadata object. This will always be returned with the
|
|
361
|
+
# Operation.
|
|
362
|
+
# Corresponds to the JSON property `metadata`
|
|
363
|
+
# @return [Hash<String,Object>]
|
|
364
|
+
attr_accessor :metadata
|
|
950
365
|
|
|
951
|
-
# The
|
|
952
|
-
#
|
|
366
|
+
# The server-assigned name, which is only unique within the same service that
|
|
367
|
+
# originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-
|
|
368
|
+
# qzoWAgEw`
|
|
369
|
+
# Corresponds to the JSON property `name`
|
|
953
370
|
# @return [String]
|
|
954
|
-
attr_accessor :
|
|
371
|
+
attr_accessor :name
|
|
955
372
|
|
|
956
|
-
#
|
|
957
|
-
#
|
|
958
|
-
#
|
|
959
|
-
|
|
960
|
-
# @return [String]
|
|
961
|
-
attr_accessor :project_id
|
|
373
|
+
# An Empty object.
|
|
374
|
+
# Corresponds to the JSON property `response`
|
|
375
|
+
# @return [Hash<String,Object>]
|
|
376
|
+
attr_accessor :response
|
|
962
377
|
|
|
963
378
|
def initialize(**args)
|
|
964
379
|
update!(**args)
|
|
@@ -966,47 +381,33 @@ module Google
|
|
|
966
381
|
|
|
967
382
|
# Update properties of this object
|
|
968
383
|
def update!(**args)
|
|
969
|
-
@
|
|
970
|
-
@
|
|
971
|
-
@
|
|
972
|
-
@
|
|
973
|
-
@
|
|
384
|
+
@done = args[:done] if args.key?(:done)
|
|
385
|
+
@error = args[:error] if args.key?(:error)
|
|
386
|
+
@metadata = args[:metadata] if args.key?(:metadata)
|
|
387
|
+
@name = args[:name] if args.key?(:name)
|
|
388
|
+
@response = args[:response] if args.key?(:response)
|
|
974
389
|
end
|
|
975
390
|
end
|
|
976
391
|
|
|
977
|
-
#
|
|
978
|
-
|
|
979
|
-
# description: "Determines whether the request has a user account"
|
|
980
|
-
# expression: "size(request.user) > 0"
|
|
981
|
-
class Expr
|
|
392
|
+
# An event that occurred during an Operation.
|
|
393
|
+
class OperationEvent
|
|
982
394
|
include Google::Apis::Core::Hashable
|
|
983
395
|
|
|
984
|
-
#
|
|
985
|
-
# describes the expression, e.g. when hovered over it in a UI.
|
|
396
|
+
# Required description of event.
|
|
986
397
|
# Corresponds to the JSON property `description`
|
|
987
398
|
# @return [String]
|
|
988
399
|
attr_accessor :description
|
|
989
400
|
|
|
990
|
-
#
|
|
991
|
-
#
|
|
992
|
-
#
|
|
993
|
-
# well-known feature set of CEL is supported.
|
|
994
|
-
# Corresponds to the JSON property `expression`
|
|
995
|
-
# @return [String]
|
|
996
|
-
attr_accessor :expression
|
|
997
|
-
|
|
998
|
-
# An optional string indicating the location of the expression for error
|
|
999
|
-
# reporting, e.g. a file name and a position in the file.
|
|
1000
|
-
# Corresponds to the JSON property `location`
|
|
401
|
+
# Optional time of when event finished. An event can have a start time and no
|
|
402
|
+
# finish time. If an event has a finish time, there must be a start time.
|
|
403
|
+
# Corresponds to the JSON property `endTime`
|
|
1001
404
|
# @return [String]
|
|
1002
|
-
attr_accessor :
|
|
405
|
+
attr_accessor :end_time
|
|
1003
406
|
|
|
1004
|
-
#
|
|
1005
|
-
#
|
|
1006
|
-
# expression.
|
|
1007
|
-
# Corresponds to the JSON property `title`
|
|
407
|
+
# Optional time of when event started.
|
|
408
|
+
# Corresponds to the JSON property `startTime`
|
|
1008
409
|
# @return [String]
|
|
1009
|
-
attr_accessor :
|
|
410
|
+
attr_accessor :start_time
|
|
1010
411
|
|
|
1011
412
|
def initialize(**args)
|
|
1012
413
|
update!(**args)
|
|
@@ -1015,51 +416,65 @@ module Google
|
|
|
1015
416
|
# Update properties of this object
|
|
1016
417
|
def update!(**args)
|
|
1017
418
|
@description = args[:description] if args.key?(:description)
|
|
1018
|
-
@
|
|
1019
|
-
@
|
|
1020
|
-
@title = args[:title] if args.key?(:title)
|
|
419
|
+
@end_time = args[:end_time] if args.key?(:end_time)
|
|
420
|
+
@start_time = args[:start_time] if args.key?(:start_time)
|
|
1021
421
|
end
|
|
1022
422
|
end
|
|
1023
423
|
|
|
1024
|
-
#
|
|
1025
|
-
class
|
|
424
|
+
# Metadata describing an Operation.
|
|
425
|
+
class OperationMetadata
|
|
1026
426
|
include Google::Apis::Core::Hashable
|
|
1027
427
|
|
|
1028
|
-
#
|
|
1029
|
-
#
|
|
428
|
+
# This field is deprecated. Use `labels` instead. Optionally provided by the
|
|
429
|
+
# caller when submitting the request that creates the operation.
|
|
430
|
+
# Corresponds to the JSON property `clientId`
|
|
1030
431
|
# @return [String]
|
|
1031
|
-
attr_accessor :
|
|
432
|
+
attr_accessor :client_id
|
|
1032
433
|
|
|
1033
|
-
# The
|
|
1034
|
-
# Corresponds to the JSON property `
|
|
434
|
+
# The time at which the job was submitted to the Genomics service.
|
|
435
|
+
# Corresponds to the JSON property `createTime`
|
|
1035
436
|
# @return [String]
|
|
1036
|
-
attr_accessor :
|
|
437
|
+
attr_accessor :create_time
|
|
1037
438
|
|
|
1038
|
-
|
|
1039
|
-
|
|
1040
|
-
|
|
439
|
+
# The time at which the job stopped running.
|
|
440
|
+
# Corresponds to the JSON property `endTime`
|
|
441
|
+
# @return [String]
|
|
442
|
+
attr_accessor :end_time
|
|
1041
443
|
|
|
1042
|
-
#
|
|
1043
|
-
|
|
1044
|
-
|
|
1045
|
-
|
|
1046
|
-
|
|
1047
|
-
|
|
444
|
+
# Optional event messages that were generated during the job's execution.
|
|
445
|
+
# This also contains any warnings that were generated during import
|
|
446
|
+
# or export.
|
|
447
|
+
# Corresponds to the JSON property `events`
|
|
448
|
+
# @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
|
|
449
|
+
attr_accessor :events
|
|
1048
450
|
|
|
1049
|
-
|
|
1050
|
-
|
|
1051
|
-
|
|
1052
|
-
|
|
451
|
+
# Optionally provided by the caller when submitting the request that creates
|
|
452
|
+
# the operation.
|
|
453
|
+
# Corresponds to the JSON property `labels`
|
|
454
|
+
# @return [Hash<String,String>]
|
|
455
|
+
attr_accessor :labels
|
|
1053
456
|
|
|
1054
|
-
# The
|
|
1055
|
-
# Corresponds to the JSON property `
|
|
457
|
+
# The Google Cloud Project in which the job is scoped.
|
|
458
|
+
# Corresponds to the JSON property `projectId`
|
|
1056
459
|
# @return [String]
|
|
1057
|
-
attr_accessor :
|
|
460
|
+
attr_accessor :project_id
|
|
1058
461
|
|
|
1059
|
-
# The
|
|
1060
|
-
#
|
|
462
|
+
# The original request that started the operation. Note that this will be in
|
|
463
|
+
# current version of the API. If the operation was started with v1beta2 API
|
|
464
|
+
# and a GetOperation is performed on v1 API, a v1 request will be returned.
|
|
465
|
+
# Corresponds to the JSON property `request`
|
|
466
|
+
# @return [Hash<String,Object>]
|
|
467
|
+
attr_accessor :request
|
|
468
|
+
|
|
469
|
+
# Runtime metadata on this Operation.
|
|
470
|
+
# Corresponds to the JSON property `runtimeMetadata`
|
|
471
|
+
# @return [Hash<String,Object>]
|
|
472
|
+
attr_accessor :runtime_metadata
|
|
473
|
+
|
|
474
|
+
# The time at which the job began to run.
|
|
475
|
+
# Corresponds to the JSON property `startTime`
|
|
1061
476
|
# @return [String]
|
|
1062
|
-
attr_accessor :
|
|
477
|
+
attr_accessor :start_time
|
|
1063
478
|
|
|
1064
479
|
def initialize(**args)
|
|
1065
480
|
update!(**args)
|
|
@@ -1067,60 +482,45 @@ module Google
|
|
|
1067
482
|
|
|
1068
483
|
# Update properties of this object
|
|
1069
484
|
def update!(**args)
|
|
1070
|
-
@
|
|
1071
|
-
@
|
|
485
|
+
@client_id = args[:client_id] if args.key?(:client_id)
|
|
486
|
+
@create_time = args[:create_time] if args.key?(:create_time)
|
|
487
|
+
@end_time = args[:end_time] if args.key?(:end_time)
|
|
488
|
+
@events = args[:events] if args.key?(:events)
|
|
489
|
+
@labels = args[:labels] if args.key?(:labels)
|
|
490
|
+
@project_id = args[:project_id] if args.key?(:project_id)
|
|
491
|
+
@request = args[:request] if args.key?(:request)
|
|
492
|
+
@runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
|
|
493
|
+
@start_time = args[:start_time] if args.key?(:start_time)
|
|
1072
494
|
end
|
|
1073
495
|
end
|
|
1074
496
|
|
|
1075
|
-
#
|
|
1076
|
-
class
|
|
497
|
+
# An event generated when the worker starts pulling an image.
|
|
498
|
+
class PullStartedEvent
|
|
1077
499
|
include Google::Apis::Core::Hashable
|
|
1078
500
|
|
|
501
|
+
# The URI of the image that was pulled.
|
|
502
|
+
# Corresponds to the JSON property `imageUri`
|
|
503
|
+
# @return [String]
|
|
504
|
+
attr_accessor :image_uri
|
|
505
|
+
|
|
1079
506
|
def initialize(**args)
|
|
1080
507
|
update!(**args)
|
|
1081
508
|
end
|
|
1082
509
|
|
|
1083
510
|
# Update properties of this object
|
|
1084
511
|
def update!(**args)
|
|
512
|
+
@image_uri = args[:image_uri] if args.key?(:image_uri)
|
|
1085
513
|
end
|
|
1086
514
|
end
|
|
1087
515
|
|
|
1088
|
-
#
|
|
1089
|
-
class
|
|
516
|
+
# An event generated when the worker stops pulling an image.
|
|
517
|
+
class PullStoppedEvent
|
|
1090
518
|
include Google::Apis::Core::Hashable
|
|
1091
519
|
|
|
1092
|
-
#
|
|
1093
|
-
#
|
|
1094
|
-
# Corresponds to the JSON property `datasetId`
|
|
1095
|
-
# @return [String]
|
|
1096
|
-
attr_accessor :dataset_id
|
|
1097
|
-
|
|
1098
|
-
# The partition strategy describes how read groups are partitioned into read
|
|
1099
|
-
# group sets.
|
|
1100
|
-
# Corresponds to the JSON property `partitionStrategy`
|
|
1101
|
-
# @return [String]
|
|
1102
|
-
attr_accessor :partition_strategy
|
|
1103
|
-
|
|
1104
|
-
# The reference set to which the imported read group sets are aligned to, if
|
|
1105
|
-
# any. The reference names of this reference set must be a superset of those
|
|
1106
|
-
# found in the imported file headers. If no reference set id is provided, a
|
|
1107
|
-
# best effort is made to associate with a matching reference set.
|
|
1108
|
-
# Corresponds to the JSON property `referenceSetId`
|
|
520
|
+
# The URI of the image that was pulled.
|
|
521
|
+
# Corresponds to the JSON property `imageUri`
|
|
1109
522
|
# @return [String]
|
|
1110
|
-
attr_accessor :
|
|
1111
|
-
|
|
1112
|
-
# A list of URIs pointing at [BAM
|
|
1113
|
-
# files](https://samtools.github.io/hts-specs/SAMv1.pdf)
|
|
1114
|
-
# in Google Cloud Storage.
|
|
1115
|
-
# Those URIs can include wildcards (*), but do not add or remove
|
|
1116
|
-
# matching files before import has completed.
|
|
1117
|
-
# Note that Google Cloud Storage object listing is only eventually
|
|
1118
|
-
# consistent: files added may be not be immediately visible to
|
|
1119
|
-
# everyone. Thus, if using a wildcard it is preferable not to start
|
|
1120
|
-
# the import immediately after the files are created.
|
|
1121
|
-
# Corresponds to the JSON property `sourceUris`
|
|
1122
|
-
# @return [Array<String>]
|
|
1123
|
-
attr_accessor :source_uris
|
|
523
|
+
attr_accessor :image_uri
|
|
1124
524
|
|
|
1125
525
|
def initialize(**args)
|
|
1126
526
|
update!(**args)
|
|
@@ -1128,74 +528,35 @@ module Google
|
|
|
1128
528
|
|
|
1129
529
|
# Update properties of this object
|
|
1130
530
|
def update!(**args)
|
|
1131
|
-
@
|
|
1132
|
-
@partition_strategy = args[:partition_strategy] if args.key?(:partition_strategy)
|
|
1133
|
-
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
|
1134
|
-
@source_uris = args[:source_uris] if args.key?(:source_uris)
|
|
531
|
+
@image_uri = args[:image_uri] if args.key?(:image_uri)
|
|
1135
532
|
end
|
|
1136
533
|
end
|
|
1137
534
|
|
|
1138
|
-
# The
|
|
1139
|
-
|
|
535
|
+
# The response to the RunPipeline method, returned in the operation's result
|
|
536
|
+
# field on success.
|
|
537
|
+
class RunPipelineResponse
|
|
1140
538
|
include Google::Apis::Core::Hashable
|
|
1141
539
|
|
|
1142
|
-
# IDs of the read group sets that were created.
|
|
1143
|
-
# Corresponds to the JSON property `readGroupSetIds`
|
|
1144
|
-
# @return [Array<String>]
|
|
1145
|
-
attr_accessor :read_group_set_ids
|
|
1146
|
-
|
|
1147
540
|
def initialize(**args)
|
|
1148
541
|
update!(**args)
|
|
1149
542
|
end
|
|
1150
543
|
|
|
1151
544
|
# Update properties of this object
|
|
1152
545
|
def update!(**args)
|
|
1153
|
-
@read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
|
|
1154
546
|
end
|
|
1155
547
|
end
|
|
1156
548
|
|
|
1157
|
-
#
|
|
1158
|
-
|
|
549
|
+
# Runtime metadata that will be populated in the
|
|
550
|
+
# runtimeMetadata
|
|
551
|
+
# field of the Operation associated with a RunPipeline execution.
|
|
552
|
+
class RuntimeMetadata
|
|
1159
553
|
include Google::Apis::Core::Hashable
|
|
1160
554
|
|
|
1161
|
-
#
|
|
1162
|
-
#
|
|
1163
|
-
# Corresponds to the JSON property `
|
|
1164
|
-
# @return [
|
|
1165
|
-
attr_accessor :
|
|
1166
|
-
|
|
1167
|
-
# A mapping between info field keys and the InfoMergeOperations to
|
|
1168
|
-
# be performed on them. This is plumbed down to the MergeVariantRequests
|
|
1169
|
-
# generated by the resulting import job.
|
|
1170
|
-
# Corresponds to the JSON property `infoMergeConfig`
|
|
1171
|
-
# @return [Hash<String,String>]
|
|
1172
|
-
attr_accessor :info_merge_config
|
|
1173
|
-
|
|
1174
|
-
# Convert reference names to the canonical representation.
|
|
1175
|
-
# hg19 haploytypes (those reference names containing "_hap")
|
|
1176
|
-
# are not modified in any way.
|
|
1177
|
-
# All other reference names are modified according to the following rules:
|
|
1178
|
-
# The reference name is capitalized.
|
|
1179
|
-
# The "chr" prefix is dropped for all autosomes and sex chromsomes.
|
|
1180
|
-
# For example "chr17" becomes "17" and "chrX" becomes "X".
|
|
1181
|
-
# All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
|
|
1182
|
-
# Corresponds to the JSON property `normalizeReferenceNames`
|
|
1183
|
-
# @return [Boolean]
|
|
1184
|
-
attr_accessor :normalize_reference_names
|
|
1185
|
-
alias_method :normalize_reference_names?, :normalize_reference_names
|
|
1186
|
-
|
|
1187
|
-
# A list of URIs referencing variant files in Google Cloud Storage. URIs can
|
|
1188
|
-
# include wildcards [as described
|
|
1189
|
-
# here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
|
|
1190
|
-
# Note that recursive wildcards ('**') are not supported.
|
|
1191
|
-
# Corresponds to the JSON property `sourceUris`
|
|
1192
|
-
# @return [Array<String>]
|
|
1193
|
-
attr_accessor :source_uris
|
|
1194
|
-
|
|
1195
|
-
# Required. The variant set to which variant data should be imported.
|
|
1196
|
-
# Corresponds to the JSON property `variantSetId`
|
|
1197
|
-
# @return [String]
|
|
1198
|
-
attr_accessor :variant_set_id
|
|
555
|
+
# Describes a Compute Engine resource that is being managed by a running
|
|
556
|
+
# pipeline.
|
|
557
|
+
# Corresponds to the JSON property `computeEngine`
|
|
558
|
+
# @return [Google::Apis::GenomicsV1::ComputeEngine]
|
|
559
|
+
attr_accessor :compute_engine
|
|
1199
560
|
|
|
1200
561
|
def initialize(**args)
|
|
1201
562
|
update!(**args)
|
|
@@ -1203,2024 +564,18 @@ module Google
|
|
|
1203
564
|
|
|
1204
565
|
# Update properties of this object
|
|
1205
566
|
def update!(**args)
|
|
1206
|
-
@
|
|
1207
|
-
@info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
|
|
1208
|
-
@normalize_reference_names = args[:normalize_reference_names] if args.key?(:normalize_reference_names)
|
|
1209
|
-
@source_uris = args[:source_uris] if args.key?(:source_uris)
|
|
1210
|
-
@variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
|
|
1211
|
-
end
|
|
1212
|
-
end
|
|
1213
|
-
|
|
1214
|
-
# The variant data import response.
|
|
1215
|
-
class ImportVariantsResponse
|
|
1216
|
-
include Google::Apis::Core::Hashable
|
|
1217
|
-
|
|
1218
|
-
# IDs of the call sets created during the import.
|
|
1219
|
-
# Corresponds to the JSON property `callSetIds`
|
|
1220
|
-
# @return [Array<String>]
|
|
1221
|
-
attr_accessor :call_set_ids
|
|
1222
|
-
|
|
1223
|
-
def initialize(**args)
|
|
1224
|
-
update!(**args)
|
|
1225
|
-
end
|
|
1226
|
-
|
|
1227
|
-
# Update properties of this object
|
|
1228
|
-
def update!(**args)
|
|
1229
|
-
@call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
|
|
1230
|
-
end
|
|
1231
|
-
end
|
|
1232
|
-
|
|
1233
|
-
# A linear alignment can be represented by one CIGAR string. Describes the
|
|
1234
|
-
# mapped position and local alignment of the read to the reference.
|
|
1235
|
-
class LinearAlignment
|
|
1236
|
-
include Google::Apis::Core::Hashable
|
|
1237
|
-
|
|
1238
|
-
# Represents the local alignment of this sequence (alignment matches, indels,
|
|
1239
|
-
# etc) against the reference.
|
|
1240
|
-
# Corresponds to the JSON property `cigar`
|
|
1241
|
-
# @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
|
|
1242
|
-
attr_accessor :cigar
|
|
1243
|
-
|
|
1244
|
-
# The mapping quality of this alignment. Represents how likely
|
|
1245
|
-
# the read maps to this position as opposed to other locations.
|
|
1246
|
-
# Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
|
|
1247
|
-
# the nearest integer.
|
|
1248
|
-
# Corresponds to the JSON property `mappingQuality`
|
|
1249
|
-
# @return [Fixnum]
|
|
1250
|
-
attr_accessor :mapping_quality
|
|
1251
|
-
|
|
1252
|
-
# An abstraction for referring to a genomic position, in relation to some
|
|
1253
|
-
# already known reference. For now, represents a genomic position as a
|
|
1254
|
-
# reference name, a base number on that reference (0-based), and a
|
|
1255
|
-
# determination of forward or reverse strand.
|
|
1256
|
-
# Corresponds to the JSON property `position`
|
|
1257
|
-
# @return [Google::Apis::GenomicsV1::Position]
|
|
1258
|
-
attr_accessor :position
|
|
1259
|
-
|
|
1260
|
-
def initialize(**args)
|
|
1261
|
-
update!(**args)
|
|
1262
|
-
end
|
|
1263
|
-
|
|
1264
|
-
# Update properties of this object
|
|
1265
|
-
def update!(**args)
|
|
1266
|
-
@cigar = args[:cigar] if args.key?(:cigar)
|
|
1267
|
-
@mapping_quality = args[:mapping_quality] if args.key?(:mapping_quality)
|
|
1268
|
-
@position = args[:position] if args.key?(:position)
|
|
1269
|
-
end
|
|
1270
|
-
end
|
|
1271
|
-
|
|
1272
|
-
#
|
|
1273
|
-
class ListBasesResponse
|
|
1274
|
-
include Google::Apis::Core::Hashable
|
|
1275
|
-
|
|
1276
|
-
# The continuation token, which is used to page through large result sets.
|
|
1277
|
-
# Provide this value in a subsequent request to return the next page of
|
|
1278
|
-
# results. This field will be empty if there aren't any additional results.
|
|
1279
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
1280
|
-
# @return [String]
|
|
1281
|
-
attr_accessor :next_page_token
|
|
1282
|
-
|
|
1283
|
-
# The offset position (0-based) of the given `sequence` from the
|
|
1284
|
-
# start of this `Reference`. This value will differ for each page
|
|
1285
|
-
# in a paginated request.
|
|
1286
|
-
# Corresponds to the JSON property `offset`
|
|
1287
|
-
# @return [Fixnum]
|
|
1288
|
-
attr_accessor :offset
|
|
1289
|
-
|
|
1290
|
-
# A substring of the bases that make up this reference.
|
|
1291
|
-
# Corresponds to the JSON property `sequence`
|
|
1292
|
-
# @return [String]
|
|
1293
|
-
attr_accessor :sequence
|
|
1294
|
-
|
|
1295
|
-
def initialize(**args)
|
|
1296
|
-
update!(**args)
|
|
1297
|
-
end
|
|
1298
|
-
|
|
1299
|
-
# Update properties of this object
|
|
1300
|
-
def update!(**args)
|
|
1301
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
1302
|
-
@offset = args[:offset] if args.key?(:offset)
|
|
1303
|
-
@sequence = args[:sequence] if args.key?(:sequence)
|
|
1304
|
-
end
|
|
1305
|
-
end
|
|
1306
|
-
|
|
1307
|
-
#
|
|
1308
|
-
class ListCoverageBucketsResponse
|
|
1309
|
-
include Google::Apis::Core::Hashable
|
|
1310
|
-
|
|
1311
|
-
# The length of each coverage bucket in base pairs. Note that buckets at the
|
|
1312
|
-
# end of a reference sequence may be shorter. This value is omitted if the
|
|
1313
|
-
# bucket width is infinity (the default behaviour, with no range or
|
|
1314
|
-
# `targetBucketWidth`).
|
|
1315
|
-
# Corresponds to the JSON property `bucketWidth`
|
|
1316
|
-
# @return [Fixnum]
|
|
1317
|
-
attr_accessor :bucket_width
|
|
1318
|
-
|
|
1319
|
-
# The coverage buckets. The list of buckets is sparse; a bucket with 0
|
|
1320
|
-
# overlapping reads is not returned. A bucket never crosses more than one
|
|
1321
|
-
# reference sequence. Each bucket has width `bucketWidth`, unless
|
|
1322
|
-
# its end is the end of the reference sequence.
|
|
1323
|
-
# Corresponds to the JSON property `coverageBuckets`
|
|
1324
|
-
# @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
|
|
1325
|
-
attr_accessor :coverage_buckets
|
|
1326
|
-
|
|
1327
|
-
# The continuation token, which is used to page through large result sets.
|
|
1328
|
-
# Provide this value in a subsequent request to return the next page of
|
|
1329
|
-
# results. This field will be empty if there aren't any additional results.
|
|
1330
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
1331
|
-
# @return [String]
|
|
1332
|
-
attr_accessor :next_page_token
|
|
1333
|
-
|
|
1334
|
-
def initialize(**args)
|
|
1335
|
-
update!(**args)
|
|
1336
|
-
end
|
|
1337
|
-
|
|
1338
|
-
# Update properties of this object
|
|
1339
|
-
def update!(**args)
|
|
1340
|
-
@bucket_width = args[:bucket_width] if args.key?(:bucket_width)
|
|
1341
|
-
@coverage_buckets = args[:coverage_buckets] if args.key?(:coverage_buckets)
|
|
1342
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
1343
|
-
end
|
|
1344
|
-
end
|
|
1345
|
-
|
|
1346
|
-
# The dataset list response.
|
|
1347
|
-
class ListDatasetsResponse
|
|
1348
|
-
include Google::Apis::Core::Hashable
|
|
1349
|
-
|
|
1350
|
-
# The list of matching Datasets.
|
|
1351
|
-
# Corresponds to the JSON property `datasets`
|
|
1352
|
-
# @return [Array<Google::Apis::GenomicsV1::Dataset>]
|
|
1353
|
-
attr_accessor :datasets
|
|
1354
|
-
|
|
1355
|
-
# The continuation token, which is used to page through large result sets.
|
|
1356
|
-
# Provide this value in a subsequent request to return the next page of
|
|
1357
|
-
# results. This field will be empty if there aren't any additional results.
|
|
1358
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
1359
|
-
# @return [String]
|
|
1360
|
-
attr_accessor :next_page_token
|
|
1361
|
-
|
|
1362
|
-
def initialize(**args)
|
|
1363
|
-
update!(**args)
|
|
1364
|
-
end
|
|
1365
|
-
|
|
1366
|
-
# Update properties of this object
|
|
1367
|
-
def update!(**args)
|
|
1368
|
-
@datasets = args[:datasets] if args.key?(:datasets)
|
|
1369
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
1370
|
-
end
|
|
1371
|
-
end
|
|
1372
|
-
|
|
1373
|
-
# The response message for Operations.ListOperations.
|
|
1374
|
-
class ListOperationsResponse
|
|
1375
|
-
include Google::Apis::Core::Hashable
|
|
1376
|
-
|
|
1377
|
-
# The standard List next-page token.
|
|
1378
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
1379
|
-
# @return [String]
|
|
1380
|
-
attr_accessor :next_page_token
|
|
1381
|
-
|
|
1382
|
-
# A list of operations that matches the specified filter in the request.
|
|
1383
|
-
# Corresponds to the JSON property `operations`
|
|
1384
|
-
# @return [Array<Google::Apis::GenomicsV1::Operation>]
|
|
1385
|
-
attr_accessor :operations
|
|
1386
|
-
|
|
1387
|
-
def initialize(**args)
|
|
1388
|
-
update!(**args)
|
|
1389
|
-
end
|
|
1390
|
-
|
|
1391
|
-
# Update properties of this object
|
|
1392
|
-
def update!(**args)
|
|
1393
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
1394
|
-
@operations = args[:operations] if args.key?(:operations)
|
|
1395
|
-
end
|
|
1396
|
-
end
|
|
1397
|
-
|
|
1398
|
-
#
|
|
1399
|
-
class MergeVariantsRequest
|
|
1400
|
-
include Google::Apis::Core::Hashable
|
|
1401
|
-
|
|
1402
|
-
# A mapping between info field keys and the InfoMergeOperations to
|
|
1403
|
-
# be performed on them.
|
|
1404
|
-
# Corresponds to the JSON property `infoMergeConfig`
|
|
1405
|
-
# @return [Hash<String,String>]
|
|
1406
|
-
attr_accessor :info_merge_config
|
|
1407
|
-
|
|
1408
|
-
# The destination variant set.
|
|
1409
|
-
# Corresponds to the JSON property `variantSetId`
|
|
1410
|
-
# @return [String]
|
|
1411
|
-
attr_accessor :variant_set_id
|
|
1412
|
-
|
|
1413
|
-
# The variants to be merged with existing variants.
|
|
1414
|
-
# Corresponds to the JSON property `variants`
|
|
1415
|
-
# @return [Array<Google::Apis::GenomicsV1::Variant>]
|
|
1416
|
-
attr_accessor :variants
|
|
1417
|
-
|
|
1418
|
-
def initialize(**args)
|
|
1419
|
-
update!(**args)
|
|
1420
|
-
end
|
|
1421
|
-
|
|
1422
|
-
# Update properties of this object
|
|
1423
|
-
def update!(**args)
|
|
1424
|
-
@info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
|
|
1425
|
-
@variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
|
|
1426
|
-
@variants = args[:variants] if args.key?(:variants)
|
|
1427
|
-
end
|
|
1428
|
-
end
|
|
1429
|
-
|
|
1430
|
-
# This resource represents a long-running operation that is the result of a
|
|
1431
|
-
# network API call.
|
|
1432
|
-
class Operation
|
|
1433
|
-
include Google::Apis::Core::Hashable
|
|
1434
|
-
|
|
1435
|
-
# If the value is `false`, it means the operation is still in progress.
|
|
1436
|
-
# If `true`, the operation is completed, and either `error` or `response` is
|
|
1437
|
-
# available.
|
|
1438
|
-
# Corresponds to the JSON property `done`
|
|
1439
|
-
# @return [Boolean]
|
|
1440
|
-
attr_accessor :done
|
|
1441
|
-
alias_method :done?, :done
|
|
1442
|
-
|
|
1443
|
-
# The `Status` type defines a logical error model that is suitable for different
|
|
1444
|
-
# programming environments, including REST APIs and RPC APIs. It is used by
|
|
1445
|
-
# [gRPC](https://github.com/grpc). The error model is designed to be:
|
|
1446
|
-
# - Simple to use and understand for most users
|
|
1447
|
-
# - Flexible enough to meet unexpected needs
|
|
1448
|
-
# # Overview
|
|
1449
|
-
# The `Status` message contains three pieces of data: error code, error message,
|
|
1450
|
-
# and error details. The error code should be an enum value of
|
|
1451
|
-
# google.rpc.Code, but it may accept additional error codes if needed. The
|
|
1452
|
-
# error message should be a developer-facing English message that helps
|
|
1453
|
-
# developers *understand* and *resolve* the error. If a localized user-facing
|
|
1454
|
-
# error message is needed, put the localized message in the error details or
|
|
1455
|
-
# localize it in the client. The optional error details may contain arbitrary
|
|
1456
|
-
# information about the error. There is a predefined set of error detail types
|
|
1457
|
-
# in the package `google.rpc` that can be used for common error conditions.
|
|
1458
|
-
# # Language mapping
|
|
1459
|
-
# The `Status` message is the logical representation of the error model, but it
|
|
1460
|
-
# is not necessarily the actual wire format. When the `Status` message is
|
|
1461
|
-
# exposed in different client libraries and different wire protocols, it can be
|
|
1462
|
-
# mapped differently. For example, it will likely be mapped to some exceptions
|
|
1463
|
-
# in Java, but more likely mapped to some error codes in C.
|
|
1464
|
-
# # Other uses
|
|
1465
|
-
# The error model and the `Status` message can be used in a variety of
|
|
1466
|
-
# environments, either with or without APIs, to provide a
|
|
1467
|
-
# consistent developer experience across different environments.
|
|
1468
|
-
# Example uses of this error model include:
|
|
1469
|
-
# - Partial errors. If a service needs to return partial errors to the client,
|
|
1470
|
-
# it may embed the `Status` in the normal response to indicate the partial
|
|
1471
|
-
# errors.
|
|
1472
|
-
# - Workflow errors. A typical workflow has multiple steps. Each step may
|
|
1473
|
-
# have a `Status` message for error reporting.
|
|
1474
|
-
# - Batch operations. If a client uses batch request and batch response, the
|
|
1475
|
-
# `Status` message should be used directly inside batch response, one for
|
|
1476
|
-
# each error sub-response.
|
|
1477
|
-
# - Asynchronous operations. If an API call embeds asynchronous operation
|
|
1478
|
-
# results in its response, the status of those operations should be
|
|
1479
|
-
# represented directly using the `Status` message.
|
|
1480
|
-
# - Logging. If some API errors are stored in logs, the message `Status` could
|
|
1481
|
-
# be used directly after any stripping needed for security/privacy reasons.
|
|
1482
|
-
# Corresponds to the JSON property `error`
|
|
1483
|
-
# @return [Google::Apis::GenomicsV1::Status]
|
|
1484
|
-
attr_accessor :error
|
|
1485
|
-
|
|
1486
|
-
# An OperationMetadata or Metadata object. This will always be returned with the
|
|
1487
|
-
# Operation.
|
|
1488
|
-
# Corresponds to the JSON property `metadata`
|
|
1489
|
-
# @return [Hash<String,Object>]
|
|
1490
|
-
attr_accessor :metadata
|
|
1491
|
-
|
|
1492
|
-
# The server-assigned name, which is only unique within the same service that
|
|
1493
|
-
# originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-
|
|
1494
|
-
# qzoWAgEw`
|
|
1495
|
-
# Corresponds to the JSON property `name`
|
|
1496
|
-
# @return [String]
|
|
1497
|
-
attr_accessor :name
|
|
1498
|
-
|
|
1499
|
-
# If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
|
|
1500
|
-
# importing Variants, an ImportVariantsResponse is returned. For pipelines and
|
|
1501
|
-
# exports, an Empty response is returned.
|
|
1502
|
-
# Corresponds to the JSON property `response`
|
|
1503
|
-
# @return [Hash<String,Object>]
|
|
1504
|
-
attr_accessor :response
|
|
1505
|
-
|
|
1506
|
-
def initialize(**args)
|
|
1507
|
-
update!(**args)
|
|
1508
|
-
end
|
|
1509
|
-
|
|
1510
|
-
# Update properties of this object
|
|
1511
|
-
def update!(**args)
|
|
1512
|
-
@done = args[:done] if args.key?(:done)
|
|
1513
|
-
@error = args[:error] if args.key?(:error)
|
|
1514
|
-
@metadata = args[:metadata] if args.key?(:metadata)
|
|
1515
|
-
@name = args[:name] if args.key?(:name)
|
|
1516
|
-
@response = args[:response] if args.key?(:response)
|
|
1517
|
-
end
|
|
1518
|
-
end
|
|
1519
|
-
|
|
1520
|
-
# An event that occurred during an Operation.
|
|
1521
|
-
class OperationEvent
|
|
1522
|
-
include Google::Apis::Core::Hashable
|
|
1523
|
-
|
|
1524
|
-
# Required description of event.
|
|
1525
|
-
# Corresponds to the JSON property `description`
|
|
1526
|
-
# @return [String]
|
|
1527
|
-
attr_accessor :description
|
|
1528
|
-
|
|
1529
|
-
# Optional time of when event finished. An event can have a start time and no
|
|
1530
|
-
# finish time. If an event has a finish time, there must be a start time.
|
|
1531
|
-
# Corresponds to the JSON property `endTime`
|
|
1532
|
-
# @return [String]
|
|
1533
|
-
attr_accessor :end_time
|
|
1534
|
-
|
|
1535
|
-
# Optional time of when event started.
|
|
1536
|
-
# Corresponds to the JSON property `startTime`
|
|
1537
|
-
# @return [String]
|
|
1538
|
-
attr_accessor :start_time
|
|
1539
|
-
|
|
1540
|
-
def initialize(**args)
|
|
1541
|
-
update!(**args)
|
|
1542
|
-
end
|
|
1543
|
-
|
|
1544
|
-
# Update properties of this object
|
|
1545
|
-
def update!(**args)
|
|
1546
|
-
@description = args[:description] if args.key?(:description)
|
|
1547
|
-
@end_time = args[:end_time] if args.key?(:end_time)
|
|
1548
|
-
@start_time = args[:start_time] if args.key?(:start_time)
|
|
1549
|
-
end
|
|
1550
|
-
end
|
|
1551
|
-
|
|
1552
|
-
# Metadata describing an Operation.
|
|
1553
|
-
class OperationMetadata
|
|
1554
|
-
include Google::Apis::Core::Hashable
|
|
1555
|
-
|
|
1556
|
-
# This field is deprecated. Use `labels` instead. Optionally provided by the
|
|
1557
|
-
# caller when submitting the request that creates the operation.
|
|
1558
|
-
# Corresponds to the JSON property `clientId`
|
|
1559
|
-
# @return [String]
|
|
1560
|
-
attr_accessor :client_id
|
|
1561
|
-
|
|
1562
|
-
# The time at which the job was submitted to the Genomics service.
|
|
1563
|
-
# Corresponds to the JSON property `createTime`
|
|
1564
|
-
# @return [String]
|
|
1565
|
-
attr_accessor :create_time
|
|
1566
|
-
|
|
1567
|
-
# The time at which the job stopped running.
|
|
1568
|
-
# Corresponds to the JSON property `endTime`
|
|
1569
|
-
# @return [String]
|
|
1570
|
-
attr_accessor :end_time
|
|
1571
|
-
|
|
1572
|
-
# Optional event messages that were generated during the job's execution.
|
|
1573
|
-
# This also contains any warnings that were generated during import
|
|
1574
|
-
# or export.
|
|
1575
|
-
# Corresponds to the JSON property `events`
|
|
1576
|
-
# @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
|
|
1577
|
-
attr_accessor :events
|
|
1578
|
-
|
|
1579
|
-
# Optionally provided by the caller when submitting the request that creates
|
|
1580
|
-
# the operation.
|
|
1581
|
-
# Corresponds to the JSON property `labels`
|
|
1582
|
-
# @return [Hash<String,String>]
|
|
1583
|
-
attr_accessor :labels
|
|
1584
|
-
|
|
1585
|
-
# The Google Cloud Project in which the job is scoped.
|
|
1586
|
-
# Corresponds to the JSON property `projectId`
|
|
1587
|
-
# @return [String]
|
|
1588
|
-
attr_accessor :project_id
|
|
1589
|
-
|
|
1590
|
-
# The original request that started the operation. Note that this will be in
|
|
1591
|
-
# current version of the API. If the operation was started with v1beta2 API
|
|
1592
|
-
# and a GetOperation is performed on v1 API, a v1 request will be returned.
|
|
1593
|
-
# Corresponds to the JSON property `request`
|
|
1594
|
-
# @return [Hash<String,Object>]
|
|
1595
|
-
attr_accessor :request
|
|
1596
|
-
|
|
1597
|
-
# Runtime metadata on this Operation.
|
|
1598
|
-
# Corresponds to the JSON property `runtimeMetadata`
|
|
1599
|
-
# @return [Hash<String,Object>]
|
|
1600
|
-
attr_accessor :runtime_metadata
|
|
1601
|
-
|
|
1602
|
-
# The time at which the job began to run.
|
|
1603
|
-
# Corresponds to the JSON property `startTime`
|
|
1604
|
-
# @return [String]
|
|
1605
|
-
attr_accessor :start_time
|
|
1606
|
-
|
|
1607
|
-
def initialize(**args)
|
|
1608
|
-
update!(**args)
|
|
1609
|
-
end
|
|
1610
|
-
|
|
1611
|
-
# Update properties of this object
|
|
1612
|
-
def update!(**args)
|
|
1613
|
-
@client_id = args[:client_id] if args.key?(:client_id)
|
|
1614
|
-
@create_time = args[:create_time] if args.key?(:create_time)
|
|
1615
|
-
@end_time = args[:end_time] if args.key?(:end_time)
|
|
1616
|
-
@events = args[:events] if args.key?(:events)
|
|
1617
|
-
@labels = args[:labels] if args.key?(:labels)
|
|
1618
|
-
@project_id = args[:project_id] if args.key?(:project_id)
|
|
1619
|
-
@request = args[:request] if args.key?(:request)
|
|
1620
|
-
@runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
|
|
1621
|
-
@start_time = args[:start_time] if args.key?(:start_time)
|
|
1622
|
-
end
|
|
1623
|
-
end
|
|
1624
|
-
|
|
1625
|
-
# Defines an Identity and Access Management (IAM) policy. It is used to
|
|
1626
|
-
# specify access control policies for Cloud Platform resources.
|
|
1627
|
-
# A `Policy` consists of a list of `bindings`. A `binding` binds a list of
|
|
1628
|
-
# `members` to a `role`, where the members can be user accounts, Google groups,
|
|
1629
|
-
# Google domains, and service accounts. A `role` is a named list of permissions
|
|
1630
|
-
# defined by IAM.
|
|
1631
|
-
# **JSON Example**
|
|
1632
|
-
# `
|
|
1633
|
-
# "bindings": [
|
|
1634
|
-
# `
|
|
1635
|
-
# "role": "roles/owner",
|
|
1636
|
-
# "members": [
|
|
1637
|
-
# "user:mike@example.com",
|
|
1638
|
-
# "group:admins@example.com",
|
|
1639
|
-
# "domain:google.com",
|
|
1640
|
-
# "serviceAccount:my-other-app@appspot.gserviceaccount.com"
|
|
1641
|
-
# ]
|
|
1642
|
-
# `,
|
|
1643
|
-
# `
|
|
1644
|
-
# "role": "roles/viewer",
|
|
1645
|
-
# "members": ["user:sean@example.com"]
|
|
1646
|
-
# `
|
|
1647
|
-
# ]
|
|
1648
|
-
# `
|
|
1649
|
-
# **YAML Example**
|
|
1650
|
-
# bindings:
|
|
1651
|
-
# - members:
|
|
1652
|
-
# - user:mike@example.com
|
|
1653
|
-
# - group:admins@example.com
|
|
1654
|
-
# - domain:google.com
|
|
1655
|
-
# - serviceAccount:my-other-app@appspot.gserviceaccount.com
|
|
1656
|
-
# role: roles/owner
|
|
1657
|
-
# - members:
|
|
1658
|
-
# - user:sean@example.com
|
|
1659
|
-
# role: roles/viewer
|
|
1660
|
-
# For a description of IAM and its features, see the
|
|
1661
|
-
# [IAM developer's guide](https://cloud.google.com/iam/docs).
|
|
1662
|
-
class Policy
|
|
1663
|
-
include Google::Apis::Core::Hashable
|
|
1664
|
-
|
|
1665
|
-
# Associates a list of `members` to a `role`.
|
|
1666
|
-
# `bindings` with no members will result in an error.
|
|
1667
|
-
# Corresponds to the JSON property `bindings`
|
|
1668
|
-
# @return [Array<Google::Apis::GenomicsV1::Binding>]
|
|
1669
|
-
attr_accessor :bindings
|
|
1670
|
-
|
|
1671
|
-
# `etag` is used for optimistic concurrency control as a way to help
|
|
1672
|
-
# prevent simultaneous updates of a policy from overwriting each other.
|
|
1673
|
-
# It is strongly suggested that systems make use of the `etag` in the
|
|
1674
|
-
# read-modify-write cycle to perform policy updates in order to avoid race
|
|
1675
|
-
# conditions: An `etag` is returned in the response to `getIamPolicy`, and
|
|
1676
|
-
# systems are expected to put that etag in the request to `setIamPolicy` to
|
|
1677
|
-
# ensure that their change will be applied to the same version of the policy.
|
|
1678
|
-
# If no `etag` is provided in the call to `setIamPolicy`, then the existing
|
|
1679
|
-
# policy is overwritten blindly.
|
|
1680
|
-
# Corresponds to the JSON property `etag`
|
|
1681
|
-
# NOTE: Values are automatically base64 encoded/decoded in the client library.
|
|
1682
|
-
# @return [String]
|
|
1683
|
-
attr_accessor :etag
|
|
1684
|
-
|
|
1685
|
-
# Deprecated.
|
|
1686
|
-
# Corresponds to the JSON property `version`
|
|
1687
|
-
# @return [Fixnum]
|
|
1688
|
-
attr_accessor :version
|
|
1689
|
-
|
|
1690
|
-
def initialize(**args)
|
|
1691
|
-
update!(**args)
|
|
1692
|
-
end
|
|
1693
|
-
|
|
1694
|
-
# Update properties of this object
|
|
1695
|
-
def update!(**args)
|
|
1696
|
-
@bindings = args[:bindings] if args.key?(:bindings)
|
|
1697
|
-
@etag = args[:etag] if args.key?(:etag)
|
|
1698
|
-
@version = args[:version] if args.key?(:version)
|
|
1699
|
-
end
|
|
1700
|
-
end
|
|
1701
|
-
|
|
1702
|
-
# An abstraction for referring to a genomic position, in relation to some
|
|
1703
|
-
# already known reference. For now, represents a genomic position as a
|
|
1704
|
-
# reference name, a base number on that reference (0-based), and a
|
|
1705
|
-
# determination of forward or reverse strand.
|
|
1706
|
-
class Position
|
|
1707
|
-
include Google::Apis::Core::Hashable
|
|
1708
|
-
|
|
1709
|
-
# The 0-based offset from the start of the forward strand for that reference.
|
|
1710
|
-
# Corresponds to the JSON property `position`
|
|
1711
|
-
# @return [Fixnum]
|
|
1712
|
-
attr_accessor :position
|
|
1713
|
-
|
|
1714
|
-
# The name of the reference in whatever reference set is being used.
|
|
1715
|
-
# Corresponds to the JSON property `referenceName`
|
|
1716
|
-
# @return [String]
|
|
1717
|
-
attr_accessor :reference_name
|
|
1718
|
-
|
|
1719
|
-
# Whether this position is on the reverse strand, as opposed to the forward
|
|
1720
|
-
# strand.
|
|
1721
|
-
# Corresponds to the JSON property `reverseStrand`
|
|
1722
|
-
# @return [Boolean]
|
|
1723
|
-
attr_accessor :reverse_strand
|
|
1724
|
-
alias_method :reverse_strand?, :reverse_strand
|
|
1725
|
-
|
|
1726
|
-
def initialize(**args)
|
|
1727
|
-
update!(**args)
|
|
1728
|
-
end
|
|
1729
|
-
|
|
1730
|
-
# Update properties of this object
|
|
1731
|
-
def update!(**args)
|
|
1732
|
-
@position = args[:position] if args.key?(:position)
|
|
1733
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
|
1734
|
-
@reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
|
|
1735
|
-
end
|
|
1736
|
-
end
|
|
1737
|
-
|
|
1738
|
-
#
|
|
1739
|
-
class Program
|
|
1740
|
-
include Google::Apis::Core::Hashable
|
|
1741
|
-
|
|
1742
|
-
# The command line used to run this program.
|
|
1743
|
-
# Corresponds to the JSON property `commandLine`
|
|
1744
|
-
# @return [String]
|
|
1745
|
-
attr_accessor :command_line
|
|
1746
|
-
|
|
1747
|
-
# The user specified locally unique ID of the program. Used along with
|
|
1748
|
-
# `prevProgramId` to define an ordering between programs.
|
|
1749
|
-
# Corresponds to the JSON property `id`
|
|
1750
|
-
# @return [String]
|
|
1751
|
-
attr_accessor :id
|
|
1752
|
-
|
|
1753
|
-
# The display name of the program. This is typically the colloquial name of
|
|
1754
|
-
# the tool used, for example 'bwa' or 'picard'.
|
|
1755
|
-
# Corresponds to the JSON property `name`
|
|
1756
|
-
# @return [String]
|
|
1757
|
-
attr_accessor :name
|
|
1758
|
-
|
|
1759
|
-
# The ID of the program run before this one.
|
|
1760
|
-
# Corresponds to the JSON property `prevProgramId`
|
|
1761
|
-
# @return [String]
|
|
1762
|
-
attr_accessor :prev_program_id
|
|
1763
|
-
|
|
1764
|
-
# The version of the program run.
|
|
1765
|
-
# Corresponds to the JSON property `version`
|
|
1766
|
-
# @return [String]
|
|
1767
|
-
attr_accessor :version
|
|
1768
|
-
|
|
1769
|
-
def initialize(**args)
|
|
1770
|
-
update!(**args)
|
|
1771
|
-
end
|
|
1772
|
-
|
|
1773
|
-
# Update properties of this object
|
|
1774
|
-
def update!(**args)
|
|
1775
|
-
@command_line = args[:command_line] if args.key?(:command_line)
|
|
1776
|
-
@id = args[:id] if args.key?(:id)
|
|
1777
|
-
@name = args[:name] if args.key?(:name)
|
|
1778
|
-
@prev_program_id = args[:prev_program_id] if args.key?(:prev_program_id)
|
|
1779
|
-
@version = args[:version] if args.key?(:version)
|
|
1780
|
-
end
|
|
1781
|
-
end
|
|
1782
|
-
|
|
1783
|
-
# An event generated when the worker starts pulling an image.
|
|
1784
|
-
class PullStartedEvent
|
|
1785
|
-
include Google::Apis::Core::Hashable
|
|
1786
|
-
|
|
1787
|
-
# The URI of the image that was pulled.
|
|
1788
|
-
# Corresponds to the JSON property `imageUri`
|
|
1789
|
-
# @return [String]
|
|
1790
|
-
attr_accessor :image_uri
|
|
1791
|
-
|
|
1792
|
-
def initialize(**args)
|
|
1793
|
-
update!(**args)
|
|
1794
|
-
end
|
|
1795
|
-
|
|
1796
|
-
# Update properties of this object
|
|
1797
|
-
def update!(**args)
|
|
1798
|
-
@image_uri = args[:image_uri] if args.key?(:image_uri)
|
|
1799
|
-
end
|
|
1800
|
-
end
|
|
1801
|
-
|
|
1802
|
-
# An event generated when the worker stops pulling an image.
|
|
1803
|
-
class PullStoppedEvent
|
|
1804
|
-
include Google::Apis::Core::Hashable
|
|
1805
|
-
|
|
1806
|
-
# The URI of the image that was pulled.
|
|
1807
|
-
# Corresponds to the JSON property `imageUri`
|
|
1808
|
-
# @return [String]
|
|
1809
|
-
attr_accessor :image_uri
|
|
1810
|
-
|
|
1811
|
-
def initialize(**args)
|
|
1812
|
-
update!(**args)
|
|
1813
|
-
end
|
|
1814
|
-
|
|
1815
|
-
# Update properties of this object
|
|
1816
|
-
def update!(**args)
|
|
1817
|
-
@image_uri = args[:image_uri] if args.key?(:image_uri)
|
|
1818
|
-
end
|
|
1819
|
-
end
|
|
1820
|
-
|
|
1821
|
-
# A 0-based half-open genomic coordinate range for search requests.
|
|
1822
|
-
class Range
|
|
1823
|
-
include Google::Apis::Core::Hashable
|
|
1824
|
-
|
|
1825
|
-
# The end position of the range on the reference, 0-based exclusive.
|
|
1826
|
-
# Corresponds to the JSON property `end`
|
|
1827
|
-
# @return [Fixnum]
|
|
1828
|
-
attr_accessor :end
|
|
1829
|
-
|
|
1830
|
-
# The reference sequence name, for example `chr1`,
|
|
1831
|
-
# `1`, or `chrX`.
|
|
1832
|
-
# Corresponds to the JSON property `referenceName`
|
|
1833
|
-
# @return [String]
|
|
1834
|
-
attr_accessor :reference_name
|
|
1835
|
-
|
|
1836
|
-
# The start position of the range on the reference, 0-based inclusive.
|
|
1837
|
-
# Corresponds to the JSON property `start`
|
|
1838
|
-
# @return [Fixnum]
|
|
1839
|
-
attr_accessor :start
|
|
1840
|
-
|
|
1841
|
-
def initialize(**args)
|
|
1842
|
-
update!(**args)
|
|
1843
|
-
end
|
|
1844
|
-
|
|
1845
|
-
# Update properties of this object
|
|
1846
|
-
def update!(**args)
|
|
1847
|
-
@end = args[:end] if args.key?(:end)
|
|
1848
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
|
1849
|
-
@start = args[:start] if args.key?(:start)
|
|
1850
|
-
end
|
|
1851
|
-
end
|
|
1852
|
-
|
|
1853
|
-
# A read alignment describes a linear alignment of a string of DNA to a
|
|
1854
|
-
# reference sequence, in addition to metadata
|
|
1855
|
-
# about the fragment (the molecule of DNA sequenced) and the read (the bases
|
|
1856
|
-
# which were read by the sequencer). A read is equivalent to a line in a SAM
|
|
1857
|
-
# file. A read belongs to exactly one read group and exactly one
|
|
1858
|
-
# read group set.
|
|
1859
|
-
# ### Reverse-stranded reads
|
|
1860
|
-
# Mapped reads (reads having a non-null `alignment`) can be aligned to either
|
|
1861
|
-
# the forward or the reverse strand of their associated reference. Strandedness
|
|
1862
|
-
# of a mapped read is encoded by `alignment.position.reverseStrand`.
|
|
1863
|
-
# If we consider the reference to be a forward-stranded coordinate space of
|
|
1864
|
-
# `[0, reference.length)` with `0` as the left-most position and
|
|
1865
|
-
# `reference.length` as the right-most position, reads are always aligned left
|
|
1866
|
-
# to right. That is, `alignment.position.position` always refers to the
|
|
1867
|
-
# left-most reference coordinate and `alignment.cigar` describes the alignment
|
|
1868
|
-
# of this read to the reference from left to right. All per-base fields such as
|
|
1869
|
-
# `alignedSequence` and `alignedQuality` share this same left-to-right
|
|
1870
|
-
# orientation; this is true of reads which are aligned to either strand. For
|
|
1871
|
-
# reverse-stranded reads, this means that `alignedSequence` is the reverse
|
|
1872
|
-
# complement of the bases that were originally reported by the sequencing
|
|
1873
|
-
# machine.
|
|
1874
|
-
# ### Generating a reference-aligned sequence string
|
|
1875
|
-
# When interacting with mapped reads, it's often useful to produce a string
|
|
1876
|
-
# representing the local alignment of the read to reference. The following
|
|
1877
|
-
# pseudocode demonstrates one way of doing this:
|
|
1878
|
-
# out = ""
|
|
1879
|
-
# offset = 0
|
|
1880
|
-
# for c in read.alignment.cigar `
|
|
1881
|
-
# switch c.operation `
|
|
1882
|
-
# case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
|
|
1883
|
-
# out += read.alignedSequence[offset:offset+c.operationLength]
|
|
1884
|
-
# offset += c.operationLength
|
|
1885
|
-
# break
|
|
1886
|
-
# case "CLIP_SOFT", "INSERT":
|
|
1887
|
-
# offset += c.operationLength
|
|
1888
|
-
# break
|
|
1889
|
-
# case "PAD":
|
|
1890
|
-
# out += repeat("*", c.operationLength)
|
|
1891
|
-
# break
|
|
1892
|
-
# case "DELETE":
|
|
1893
|
-
# out += repeat("-", c.operationLength)
|
|
1894
|
-
# break
|
|
1895
|
-
# case "SKIP":
|
|
1896
|
-
# out += repeat(" ", c.operationLength)
|
|
1897
|
-
# break
|
|
1898
|
-
# case "CLIP_HARD":
|
|
1899
|
-
# break
|
|
1900
|
-
# `
|
|
1901
|
-
# `
|
|
1902
|
-
# return out
|
|
1903
|
-
# ### Converting to SAM's CIGAR string
|
|
1904
|
-
# The following pseudocode generates a SAM CIGAR string from the
|
|
1905
|
-
# `cigar` field. Note that this is a lossy conversion
|
|
1906
|
-
# (`cigar.referenceSequence` is lost).
|
|
1907
|
-
# cigarMap = `
|
|
1908
|
-
# "ALIGNMENT_MATCH": "M",
|
|
1909
|
-
# "INSERT": "I",
|
|
1910
|
-
# "DELETE": "D",
|
|
1911
|
-
# "SKIP": "N",
|
|
1912
|
-
# "CLIP_SOFT": "S",
|
|
1913
|
-
# "CLIP_HARD": "H",
|
|
1914
|
-
# "PAD": "P",
|
|
1915
|
-
# "SEQUENCE_MATCH": "=",
|
|
1916
|
-
# "SEQUENCE_MISMATCH": "X",
|
|
1917
|
-
# `
|
|
1918
|
-
# cigarStr = ""
|
|
1919
|
-
# for c in read.alignment.cigar `
|
|
1920
|
-
# cigarStr += c.operationLength + cigarMap[c.operation]
|
|
1921
|
-
# `
|
|
1922
|
-
# return cigarStr
|
|
1923
|
-
class Read
|
|
1924
|
-
include Google::Apis::Core::Hashable
|
|
1925
|
-
|
|
1926
|
-
# The quality of the read sequence contained in this alignment record
|
|
1927
|
-
# (equivalent to QUAL in SAM).
|
|
1928
|
-
# `alignedSequence` and `alignedQuality` may be shorter than the full read
|
|
1929
|
-
# sequence and quality. This will occur if the alignment is part of a
|
|
1930
|
-
# chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
|
|
1931
|
-
# for this read will begin/end with a hard clip operator that will indicate
|
|
1932
|
-
# the length of the excised sequence.
|
|
1933
|
-
# Corresponds to the JSON property `alignedQuality`
|
|
1934
|
-
# @return [Array<Fixnum>]
|
|
1935
|
-
attr_accessor :aligned_quality
|
|
1936
|
-
|
|
1937
|
-
# The bases of the read sequence contained in this alignment record,
|
|
1938
|
-
# **without CIGAR operations applied** (equivalent to SEQ in SAM).
|
|
1939
|
-
# `alignedSequence` and `alignedQuality` may be
|
|
1940
|
-
# shorter than the full read sequence and quality. This will occur if the
|
|
1941
|
-
# alignment is part of a chimeric alignment, or if the read was trimmed. When
|
|
1942
|
-
# this occurs, the CIGAR for this read will begin/end with a hard clip
|
|
1943
|
-
# operator that will indicate the length of the excised sequence.
|
|
1944
|
-
# Corresponds to the JSON property `alignedSequence`
|
|
1945
|
-
# @return [String]
|
|
1946
|
-
attr_accessor :aligned_sequence
|
|
1947
|
-
|
|
1948
|
-
# A linear alignment can be represented by one CIGAR string. Describes the
|
|
1949
|
-
# mapped position and local alignment of the read to the reference.
|
|
1950
|
-
# Corresponds to the JSON property `alignment`
|
|
1951
|
-
# @return [Google::Apis::GenomicsV1::LinearAlignment]
|
|
1952
|
-
attr_accessor :alignment
|
|
1953
|
-
|
|
1954
|
-
# The fragment is a PCR or optical duplicate (SAM flag 0x400).
|
|
1955
|
-
# Corresponds to the JSON property `duplicateFragment`
|
|
1956
|
-
# @return [Boolean]
|
|
1957
|
-
attr_accessor :duplicate_fragment
|
|
1958
|
-
alias_method :duplicate_fragment?, :duplicate_fragment
|
|
1959
|
-
|
|
1960
|
-
# Whether this read did not pass filters, such as platform or vendor quality
|
|
1961
|
-
# controls (SAM flag 0x200).
|
|
1962
|
-
# Corresponds to the JSON property `failedVendorQualityChecks`
|
|
1963
|
-
# @return [Boolean]
|
|
1964
|
-
attr_accessor :failed_vendor_quality_checks
|
|
1965
|
-
alias_method :failed_vendor_quality_checks?, :failed_vendor_quality_checks
|
|
1966
|
-
|
|
1967
|
-
# The observed length of the fragment, equivalent to TLEN in SAM.
|
|
1968
|
-
# Corresponds to the JSON property `fragmentLength`
|
|
1969
|
-
# @return [Fixnum]
|
|
1970
|
-
attr_accessor :fragment_length
|
|
1971
|
-
|
|
1972
|
-
# The fragment name. Equivalent to QNAME (query template name) in SAM.
|
|
1973
|
-
# Corresponds to the JSON property `fragmentName`
|
|
1974
|
-
# @return [String]
|
|
1975
|
-
attr_accessor :fragment_name
|
|
1976
|
-
|
|
1977
|
-
# The server-generated read ID, unique across all reads. This is different
|
|
1978
|
-
# from the `fragmentName`.
|
|
1979
|
-
# Corresponds to the JSON property `id`
|
|
1980
|
-
# @return [String]
|
|
1981
|
-
attr_accessor :id
|
|
1982
|
-
|
|
1983
|
-
# A map of additional read alignment information. This must be of the form
|
|
1984
|
-
# map<string, string[]> (string key mapping to a list of string values).
|
|
1985
|
-
# Corresponds to the JSON property `info`
|
|
1986
|
-
# @return [Hash<String,Array<Object>>]
|
|
1987
|
-
attr_accessor :info
|
|
1988
|
-
|
|
1989
|
-
# An abstraction for referring to a genomic position, in relation to some
|
|
1990
|
-
# already known reference. For now, represents a genomic position as a
|
|
1991
|
-
# reference name, a base number on that reference (0-based), and a
|
|
1992
|
-
# determination of forward or reverse strand.
|
|
1993
|
-
# Corresponds to the JSON property `nextMatePosition`
|
|
1994
|
-
# @return [Google::Apis::GenomicsV1::Position]
|
|
1995
|
-
attr_accessor :next_mate_position
|
|
1996
|
-
|
|
1997
|
-
# The number of reads in the fragment (extension to SAM flag 0x1).
|
|
1998
|
-
# Corresponds to the JSON property `numberReads`
|
|
1999
|
-
# @return [Fixnum]
|
|
2000
|
-
attr_accessor :number_reads
|
|
2001
|
-
|
|
2002
|
-
# The orientation and the distance between reads from the fragment are
|
|
2003
|
-
# consistent with the sequencing protocol (SAM flag 0x2).
|
|
2004
|
-
# Corresponds to the JSON property `properPlacement`
|
|
2005
|
-
# @return [Boolean]
|
|
2006
|
-
attr_accessor :proper_placement
|
|
2007
|
-
alias_method :proper_placement?, :proper_placement
|
|
2008
|
-
|
|
2009
|
-
# The ID of the read group this read belongs to. A read belongs to exactly
|
|
2010
|
-
# one read group. This is a server-generated ID which is distinct from SAM's
|
|
2011
|
-
# RG tag (for that value, see
|
|
2012
|
-
# ReadGroup.name).
|
|
2013
|
-
# Corresponds to the JSON property `readGroupId`
|
|
2014
|
-
# @return [String]
|
|
2015
|
-
attr_accessor :read_group_id
|
|
2016
|
-
|
|
2017
|
-
# The ID of the read group set this read belongs to. A read belongs to
|
|
2018
|
-
# exactly one read group set.
|
|
2019
|
-
# Corresponds to the JSON property `readGroupSetId`
|
|
2020
|
-
# @return [String]
|
|
2021
|
-
attr_accessor :read_group_set_id
|
|
2022
|
-
|
|
2023
|
-
# The read number in sequencing. 0-based and less than numberReads. This
|
|
2024
|
-
# field replaces SAM flag 0x40 and 0x80.
|
|
2025
|
-
# Corresponds to the JSON property `readNumber`
|
|
2026
|
-
# @return [Fixnum]
|
|
2027
|
-
attr_accessor :read_number
|
|
2028
|
-
|
|
2029
|
-
# Whether this alignment is secondary. Equivalent to SAM flag 0x100.
|
|
2030
|
-
# A secondary alignment represents an alternative to the primary alignment
|
|
2031
|
-
# for this read. Aligners may return secondary alignments if a read can map
|
|
2032
|
-
# ambiguously to multiple coordinates in the genome. By convention, each read
|
|
2033
|
-
# has one and only one alignment where both `secondaryAlignment`
|
|
2034
|
-
# and `supplementaryAlignment` are false.
|
|
2035
|
-
# Corresponds to the JSON property `secondaryAlignment`
|
|
2036
|
-
# @return [Boolean]
|
|
2037
|
-
attr_accessor :secondary_alignment
|
|
2038
|
-
alias_method :secondary_alignment?, :secondary_alignment
|
|
2039
|
-
|
|
2040
|
-
# Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
|
|
2041
|
-
# Supplementary alignments are used in the representation of a chimeric
|
|
2042
|
-
# alignment. In a chimeric alignment, a read is split into multiple
|
|
2043
|
-
# linear alignments that map to different reference contigs. The first
|
|
2044
|
-
# linear alignment in the read will be designated as the representative
|
|
2045
|
-
# alignment; the remaining linear alignments will be designated as
|
|
2046
|
-
# supplementary alignments. These alignments may have different mapping
|
|
2047
|
-
# quality scores. In each linear alignment in a chimeric alignment, the read
|
|
2048
|
-
# will be hard clipped. The `alignedSequence` and
|
|
2049
|
-
# `alignedQuality` fields in the alignment record will only
|
|
2050
|
-
# represent the bases for its respective linear alignment.
|
|
2051
|
-
# Corresponds to the JSON property `supplementaryAlignment`
|
|
2052
|
-
# @return [Boolean]
|
|
2053
|
-
attr_accessor :supplementary_alignment
|
|
2054
|
-
alias_method :supplementary_alignment?, :supplementary_alignment
|
|
2055
|
-
|
|
2056
|
-
def initialize(**args)
|
|
2057
|
-
update!(**args)
|
|
2058
|
-
end
|
|
2059
|
-
|
|
2060
|
-
# Update properties of this object
|
|
2061
|
-
def update!(**args)
|
|
2062
|
-
@aligned_quality = args[:aligned_quality] if args.key?(:aligned_quality)
|
|
2063
|
-
@aligned_sequence = args[:aligned_sequence] if args.key?(:aligned_sequence)
|
|
2064
|
-
@alignment = args[:alignment] if args.key?(:alignment)
|
|
2065
|
-
@duplicate_fragment = args[:duplicate_fragment] if args.key?(:duplicate_fragment)
|
|
2066
|
-
@failed_vendor_quality_checks = args[:failed_vendor_quality_checks] if args.key?(:failed_vendor_quality_checks)
|
|
2067
|
-
@fragment_length = args[:fragment_length] if args.key?(:fragment_length)
|
|
2068
|
-
@fragment_name = args[:fragment_name] if args.key?(:fragment_name)
|
|
2069
|
-
@id = args[:id] if args.key?(:id)
|
|
2070
|
-
@info = args[:info] if args.key?(:info)
|
|
2071
|
-
@next_mate_position = args[:next_mate_position] if args.key?(:next_mate_position)
|
|
2072
|
-
@number_reads = args[:number_reads] if args.key?(:number_reads)
|
|
2073
|
-
@proper_placement = args[:proper_placement] if args.key?(:proper_placement)
|
|
2074
|
-
@read_group_id = args[:read_group_id] if args.key?(:read_group_id)
|
|
2075
|
-
@read_group_set_id = args[:read_group_set_id] if args.key?(:read_group_set_id)
|
|
2076
|
-
@read_number = args[:read_number] if args.key?(:read_number)
|
|
2077
|
-
@secondary_alignment = args[:secondary_alignment] if args.key?(:secondary_alignment)
|
|
2078
|
-
@supplementary_alignment = args[:supplementary_alignment] if args.key?(:supplementary_alignment)
|
|
2079
|
-
end
|
|
2080
|
-
end
|
|
2081
|
-
|
|
2082
|
-
# A read group is all the data that's processed the same way by the sequencer.
|
|
2083
|
-
class ReadGroup
|
|
2084
|
-
include Google::Apis::Core::Hashable
|
|
2085
|
-
|
|
2086
|
-
# The dataset to which this read group belongs.
|
|
2087
|
-
# Corresponds to the JSON property `datasetId`
|
|
2088
|
-
# @return [String]
|
|
2089
|
-
attr_accessor :dataset_id
|
|
2090
|
-
|
|
2091
|
-
# A free-form text description of this read group.
|
|
2092
|
-
# Corresponds to the JSON property `description`
|
|
2093
|
-
# @return [String]
|
|
2094
|
-
attr_accessor :description
|
|
2095
|
-
|
|
2096
|
-
# The experiment used to generate this read group.
|
|
2097
|
-
# Corresponds to the JSON property `experiment`
|
|
2098
|
-
# @return [Google::Apis::GenomicsV1::Experiment]
|
|
2099
|
-
attr_accessor :experiment
|
|
2100
|
-
|
|
2101
|
-
# The server-generated read group ID, unique for all read groups.
|
|
2102
|
-
# Note: This is different than the @RG ID field in the SAM spec. For that
|
|
2103
|
-
# value, see name.
|
|
2104
|
-
# Corresponds to the JSON property `id`
|
|
2105
|
-
# @return [String]
|
|
2106
|
-
attr_accessor :id
|
|
2107
|
-
|
|
2108
|
-
# A map of additional read group information. This must be of the form
|
|
2109
|
-
# map<string, string[]> (string key mapping to a list of string values).
|
|
2110
|
-
# Corresponds to the JSON property `info`
|
|
2111
|
-
# @return [Hash<String,Array<Object>>]
|
|
2112
|
-
attr_accessor :info
|
|
2113
|
-
|
|
2114
|
-
# The read group name. This corresponds to the @RG ID field in the SAM spec.
|
|
2115
|
-
# Corresponds to the JSON property `name`
|
|
2116
|
-
# @return [String]
|
|
2117
|
-
attr_accessor :name
|
|
2118
|
-
|
|
2119
|
-
# The predicted insert size of this read group. The insert size is the length
|
|
2120
|
-
# the sequenced DNA fragment from end-to-end, not including the adapters.
|
|
2121
|
-
# Corresponds to the JSON property `predictedInsertSize`
|
|
2122
|
-
# @return [Fixnum]
|
|
2123
|
-
attr_accessor :predicted_insert_size
|
|
2124
|
-
|
|
2125
|
-
# The programs used to generate this read group. Programs are always
|
|
2126
|
-
# identical for all read groups within a read group set. For this reason,
|
|
2127
|
-
# only the first read group in a returned set will have this field
|
|
2128
|
-
# populated.
|
|
2129
|
-
# Corresponds to the JSON property `programs`
|
|
2130
|
-
# @return [Array<Google::Apis::GenomicsV1::Program>]
|
|
2131
|
-
attr_accessor :programs
|
|
2132
|
-
|
|
2133
|
-
# The reference set the reads in this read group are aligned to.
|
|
2134
|
-
# Corresponds to the JSON property `referenceSetId`
|
|
2135
|
-
# @return [String]
|
|
2136
|
-
attr_accessor :reference_set_id
|
|
2137
|
-
|
|
2138
|
-
# A client-supplied sample identifier for the reads in this read group.
|
|
2139
|
-
# Corresponds to the JSON property `sampleId`
|
|
2140
|
-
# @return [String]
|
|
2141
|
-
attr_accessor :sample_id
|
|
2142
|
-
|
|
2143
|
-
def initialize(**args)
|
|
2144
|
-
update!(**args)
|
|
2145
|
-
end
|
|
2146
|
-
|
|
2147
|
-
# Update properties of this object
|
|
2148
|
-
def update!(**args)
|
|
2149
|
-
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
|
2150
|
-
@description = args[:description] if args.key?(:description)
|
|
2151
|
-
@experiment = args[:experiment] if args.key?(:experiment)
|
|
2152
|
-
@id = args[:id] if args.key?(:id)
|
|
2153
|
-
@info = args[:info] if args.key?(:info)
|
|
2154
|
-
@name = args[:name] if args.key?(:name)
|
|
2155
|
-
@predicted_insert_size = args[:predicted_insert_size] if args.key?(:predicted_insert_size)
|
|
2156
|
-
@programs = args[:programs] if args.key?(:programs)
|
|
2157
|
-
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
|
2158
|
-
@sample_id = args[:sample_id] if args.key?(:sample_id)
|
|
2159
|
-
end
|
|
2160
|
-
end
|
|
2161
|
-
|
|
2162
|
-
# A read group set is a logical collection of read groups, which are
|
|
2163
|
-
# collections of reads produced by a sequencer. A read group set typically
|
|
2164
|
-
# models reads corresponding to one sample, sequenced one way, and aligned one
|
|
2165
|
-
# way.
|
|
2166
|
-
# * A read group set belongs to one dataset.
|
|
2167
|
-
# * A read group belongs to one read group set.
|
|
2168
|
-
# * A read belongs to one read group.
|
|
2169
|
-
class ReadGroupSet
|
|
2170
|
-
include Google::Apis::Core::Hashable
|
|
2171
|
-
|
|
2172
|
-
# The dataset to which this read group set belongs.
|
|
2173
|
-
# Corresponds to the JSON property `datasetId`
|
|
2174
|
-
# @return [String]
|
|
2175
|
-
attr_accessor :dataset_id
|
|
2176
|
-
|
|
2177
|
-
# The filename of the original source file for this read group set, if any.
|
|
2178
|
-
# Corresponds to the JSON property `filename`
|
|
2179
|
-
# @return [String]
|
|
2180
|
-
attr_accessor :filename
|
|
2181
|
-
|
|
2182
|
-
# The server-generated read group set ID, unique for all read group sets.
|
|
2183
|
-
# Corresponds to the JSON property `id`
|
|
2184
|
-
# @return [String]
|
|
2185
|
-
attr_accessor :id
|
|
2186
|
-
|
|
2187
|
-
# A map of additional read group set information.
|
|
2188
|
-
# Corresponds to the JSON property `info`
|
|
2189
|
-
# @return [Hash<String,Array<Object>>]
|
|
2190
|
-
attr_accessor :info
|
|
2191
|
-
|
|
2192
|
-
# The read group set name. By default this will be initialized to the sample
|
|
2193
|
-
# name of the sequenced data contained in this set.
|
|
2194
|
-
# Corresponds to the JSON property `name`
|
|
2195
|
-
# @return [String]
|
|
2196
|
-
attr_accessor :name
|
|
2197
|
-
|
|
2198
|
-
# The read groups in this set. There are typically 1-10 read groups in a read
|
|
2199
|
-
# group set.
|
|
2200
|
-
# Corresponds to the JSON property `readGroups`
|
|
2201
|
-
# @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
|
|
2202
|
-
attr_accessor :read_groups
|
|
2203
|
-
|
|
2204
|
-
# The reference set to which the reads in this read group set are aligned.
|
|
2205
|
-
# Corresponds to the JSON property `referenceSetId`
|
|
2206
|
-
# @return [String]
|
|
2207
|
-
attr_accessor :reference_set_id
|
|
2208
|
-
|
|
2209
|
-
def initialize(**args)
|
|
2210
|
-
update!(**args)
|
|
2211
|
-
end
|
|
2212
|
-
|
|
2213
|
-
# Update properties of this object
|
|
2214
|
-
def update!(**args)
|
|
2215
|
-
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
|
2216
|
-
@filename = args[:filename] if args.key?(:filename)
|
|
2217
|
-
@id = args[:id] if args.key?(:id)
|
|
2218
|
-
@info = args[:info] if args.key?(:info)
|
|
2219
|
-
@name = args[:name] if args.key?(:name)
|
|
2220
|
-
@read_groups = args[:read_groups] if args.key?(:read_groups)
|
|
2221
|
-
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
|
2222
|
-
end
|
|
2223
|
-
end
|
|
2224
|
-
|
|
2225
|
-
# A reference is a canonical assembled DNA sequence, intended to act as a
|
|
2226
|
-
# reference coordinate space for other genomic annotations. A single reference
|
|
2227
|
-
# might represent the human chromosome 1 or mitochandrial DNA, for instance. A
|
|
2228
|
-
# reference belongs to one or more reference sets.
|
|
2229
|
-
class Reference
|
|
2230
|
-
include Google::Apis::Core::Hashable
|
|
2231
|
-
|
|
2232
|
-
# The server-generated reference ID, unique across all references.
|
|
2233
|
-
# Corresponds to the JSON property `id`
|
|
2234
|
-
# @return [String]
|
|
2235
|
-
attr_accessor :id
|
|
2236
|
-
|
|
2237
|
-
# The length of this reference's sequence.
|
|
2238
|
-
# Corresponds to the JSON property `length`
|
|
2239
|
-
# @return [Fixnum]
|
|
2240
|
-
attr_accessor :length
|
|
2241
|
-
|
|
2242
|
-
# MD5 of the upper-case sequence excluding all whitespace characters (this
|
|
2243
|
-
# is equivalent to SQ:M5 in SAM). This value is represented in lower case
|
|
2244
|
-
# hexadecimal format.
|
|
2245
|
-
# Corresponds to the JSON property `md5checksum`
|
|
2246
|
-
# @return [String]
|
|
2247
|
-
attr_accessor :md5checksum
|
|
2248
|
-
|
|
2249
|
-
# The name of this reference, for example `22`.
|
|
2250
|
-
# Corresponds to the JSON property `name`
|
|
2251
|
-
# @return [String]
|
|
2252
|
-
attr_accessor :name
|
|
2253
|
-
|
|
2254
|
-
# ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
|
|
2255
|
-
# Corresponds to the JSON property `ncbiTaxonId`
|
|
2256
|
-
# @return [Fixnum]
|
|
2257
|
-
attr_accessor :ncbi_taxon_id
|
|
2258
|
-
|
|
2259
|
-
# All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
|
|
2260
|
-
# with a version number, for example `GCF_000001405.26`.
|
|
2261
|
-
# Corresponds to the JSON property `sourceAccessions`
|
|
2262
|
-
# @return [Array<String>]
|
|
2263
|
-
attr_accessor :source_accessions
|
|
2264
|
-
|
|
2265
|
-
# The URI from which the sequence was obtained. Typically specifies a FASTA
|
|
2266
|
-
# format file.
|
|
2267
|
-
# Corresponds to the JSON property `sourceUri`
|
|
2268
|
-
# @return [String]
|
|
2269
|
-
attr_accessor :source_uri
|
|
2270
|
-
|
|
2271
|
-
def initialize(**args)
|
|
2272
|
-
update!(**args)
|
|
2273
|
-
end
|
|
2274
|
-
|
|
2275
|
-
# Update properties of this object
|
|
2276
|
-
def update!(**args)
|
|
2277
|
-
@id = args[:id] if args.key?(:id)
|
|
2278
|
-
@length = args[:length] if args.key?(:length)
|
|
2279
|
-
@md5checksum = args[:md5checksum] if args.key?(:md5checksum)
|
|
2280
|
-
@name = args[:name] if args.key?(:name)
|
|
2281
|
-
@ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
|
|
2282
|
-
@source_accessions = args[:source_accessions] if args.key?(:source_accessions)
|
|
2283
|
-
@source_uri = args[:source_uri] if args.key?(:source_uri)
|
|
2284
|
-
end
|
|
2285
|
-
end
|
|
2286
|
-
|
|
2287
|
-
# ReferenceBound records an upper bound for the starting coordinate of
|
|
2288
|
-
# variants in a particular reference.
|
|
2289
|
-
class ReferenceBound
|
|
2290
|
-
include Google::Apis::Core::Hashable
|
|
2291
|
-
|
|
2292
|
-
# The name of the reference associated with this reference bound.
|
|
2293
|
-
# Corresponds to the JSON property `referenceName`
|
|
2294
|
-
# @return [String]
|
|
2295
|
-
attr_accessor :reference_name
|
|
2296
|
-
|
|
2297
|
-
# An upper bound (inclusive) on the starting coordinate of any
|
|
2298
|
-
# variant in the reference sequence.
|
|
2299
|
-
# Corresponds to the JSON property `upperBound`
|
|
2300
|
-
# @return [Fixnum]
|
|
2301
|
-
attr_accessor :upper_bound
|
|
2302
|
-
|
|
2303
|
-
def initialize(**args)
|
|
2304
|
-
update!(**args)
|
|
2305
|
-
end
|
|
2306
|
-
|
|
2307
|
-
# Update properties of this object
|
|
2308
|
-
def update!(**args)
|
|
2309
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
|
2310
|
-
@upper_bound = args[:upper_bound] if args.key?(:upper_bound)
|
|
2311
|
-
end
|
|
2312
|
-
end
|
|
2313
|
-
|
|
2314
|
-
# A reference set is a set of references which typically comprise a reference
|
|
2315
|
-
# assembly for a species, such as `GRCh38` which is representative
|
|
2316
|
-
# of the human genome. A reference set defines a common coordinate space for
|
|
2317
|
-
# comparing reference-aligned experimental data. A reference set contains 1 or
|
|
2318
|
-
# more references.
|
|
2319
|
-
class ReferenceSet
|
|
2320
|
-
include Google::Apis::Core::Hashable
|
|
2321
|
-
|
|
2322
|
-
# Public id of this reference set, such as `GRCh37`.
|
|
2323
|
-
# Corresponds to the JSON property `assemblyId`
|
|
2324
|
-
# @return [String]
|
|
2325
|
-
attr_accessor :assembly_id
|
|
2326
|
-
|
|
2327
|
-
# Free text description of this reference set.
|
|
2328
|
-
# Corresponds to the JSON property `description`
|
|
2329
|
-
# @return [String]
|
|
2330
|
-
attr_accessor :description
|
|
2331
|
-
|
|
2332
|
-
# The server-generated reference set ID, unique across all reference sets.
|
|
2333
|
-
# Corresponds to the JSON property `id`
|
|
2334
|
-
# @return [String]
|
|
2335
|
-
attr_accessor :id
|
|
2336
|
-
|
|
2337
|
-
# Order-independent MD5 checksum which identifies this reference set. The
|
|
2338
|
-
# checksum is computed by sorting all lower case hexidecimal string
|
|
2339
|
-
# `reference.md5checksum` (for all reference in this set) in
|
|
2340
|
-
# ascending lexicographic order, concatenating, and taking the MD5 of that
|
|
2341
|
-
# value. The resulting value is represented in lower case hexadecimal format.
|
|
2342
|
-
# Corresponds to the JSON property `md5checksum`
|
|
2343
|
-
# @return [String]
|
|
2344
|
-
attr_accessor :md5checksum
|
|
2345
|
-
|
|
2346
|
-
# ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
|
|
2347
|
-
# indicating the species which this reference set is intended to model. Note
|
|
2348
|
-
# that contained references may specify a different `ncbiTaxonId`, as
|
|
2349
|
-
# assemblies may contain reference sequences which do not belong to the
|
|
2350
|
-
# modeled species, for example EBV in a human reference genome.
|
|
2351
|
-
# Corresponds to the JSON property `ncbiTaxonId`
|
|
2352
|
-
# @return [Fixnum]
|
|
2353
|
-
attr_accessor :ncbi_taxon_id
|
|
2354
|
-
|
|
2355
|
-
# The IDs of the reference objects that are part of this set.
|
|
2356
|
-
# `Reference.md5checksum` must be unique within this set.
|
|
2357
|
-
# Corresponds to the JSON property `referenceIds`
|
|
2358
|
-
# @return [Array<String>]
|
|
2359
|
-
attr_accessor :reference_ids
|
|
2360
|
-
|
|
2361
|
-
# All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
|
|
2362
|
-
# with a version number, for example `NC_000001.11`.
|
|
2363
|
-
# Corresponds to the JSON property `sourceAccessions`
|
|
2364
|
-
# @return [Array<String>]
|
|
2365
|
-
attr_accessor :source_accessions
|
|
2366
|
-
|
|
2367
|
-
# The URI from which the references were obtained.
|
|
2368
|
-
# Corresponds to the JSON property `sourceUri`
|
|
2369
|
-
# @return [String]
|
|
2370
|
-
attr_accessor :source_uri
|
|
2371
|
-
|
|
2372
|
-
def initialize(**args)
|
|
2373
|
-
update!(**args)
|
|
2374
|
-
end
|
|
2375
|
-
|
|
2376
|
-
# Update properties of this object
|
|
2377
|
-
def update!(**args)
|
|
2378
|
-
@assembly_id = args[:assembly_id] if args.key?(:assembly_id)
|
|
2379
|
-
@description = args[:description] if args.key?(:description)
|
|
2380
|
-
@id = args[:id] if args.key?(:id)
|
|
2381
|
-
@md5checksum = args[:md5checksum] if args.key?(:md5checksum)
|
|
2382
|
-
@ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
|
|
2383
|
-
@reference_ids = args[:reference_ids] if args.key?(:reference_ids)
|
|
2384
|
-
@source_accessions = args[:source_accessions] if args.key?(:source_accessions)
|
|
2385
|
-
@source_uri = args[:source_uri] if args.key?(:source_uri)
|
|
2386
|
-
end
|
|
2387
|
-
end
|
|
2388
|
-
|
|
2389
|
-
# The response to the RunPipeline method, returned in the operation's result
|
|
2390
|
-
# field on success.
|
|
2391
|
-
class RunPipelineResponse
|
|
2392
|
-
include Google::Apis::Core::Hashable
|
|
2393
|
-
|
|
2394
|
-
def initialize(**args)
|
|
2395
|
-
update!(**args)
|
|
2396
|
-
end
|
|
2397
|
-
|
|
2398
|
-
# Update properties of this object
|
|
2399
|
-
def update!(**args)
|
|
2400
|
-
end
|
|
2401
|
-
end
|
|
2402
|
-
|
|
2403
|
-
# Runtime metadata that will be populated in the
|
|
2404
|
-
# runtimeMetadata
|
|
2405
|
-
# field of the Operation associated with a RunPipeline execution.
|
|
2406
|
-
class RuntimeMetadata
|
|
2407
|
-
include Google::Apis::Core::Hashable
|
|
2408
|
-
|
|
2409
|
-
# Describes a Compute Engine resource that is being managed by a running
|
|
2410
|
-
# pipeline.
|
|
2411
|
-
# Corresponds to the JSON property `computeEngine`
|
|
2412
|
-
# @return [Google::Apis::GenomicsV1::ComputeEngine]
|
|
2413
|
-
attr_accessor :compute_engine
|
|
2414
|
-
|
|
2415
|
-
def initialize(**args)
|
|
2416
|
-
update!(**args)
|
|
2417
|
-
end
|
|
2418
|
-
|
|
2419
|
-
# Update properties of this object
|
|
2420
|
-
def update!(**args)
|
|
2421
|
-
@compute_engine = args[:compute_engine] if args.key?(:compute_engine)
|
|
2422
|
-
end
|
|
2423
|
-
end
|
|
2424
|
-
|
|
2425
|
-
#
|
|
2426
|
-
class SearchAnnotationSetsRequest
|
|
2427
|
-
include Google::Apis::Core::Hashable
|
|
2428
|
-
|
|
2429
|
-
# Required. The dataset IDs to search within. Caller must have `READ` access
|
|
2430
|
-
# to these datasets.
|
|
2431
|
-
# Corresponds to the JSON property `datasetIds`
|
|
2432
|
-
# @return [Array<String>]
|
|
2433
|
-
attr_accessor :dataset_ids
|
|
2434
|
-
|
|
2435
|
-
# Only return annotations sets for which a substring of the name matches this
|
|
2436
|
-
# string (case insensitive).
|
|
2437
|
-
# Corresponds to the JSON property `name`
|
|
2438
|
-
# @return [String]
|
|
2439
|
-
attr_accessor :name
|
|
2440
|
-
|
|
2441
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
2442
|
-
# defaults to 128. The maximum value is 1024.
|
|
2443
|
-
# Corresponds to the JSON property `pageSize`
|
|
2444
|
-
# @return [Fixnum]
|
|
2445
|
-
attr_accessor :page_size
|
|
2446
|
-
|
|
2447
|
-
# The continuation token, which is used to page through large result sets.
|
|
2448
|
-
# To get the next page of results, set this parameter to the value of
|
|
2449
|
-
# `nextPageToken` from the previous response.
|
|
2450
|
-
# Corresponds to the JSON property `pageToken`
|
|
2451
|
-
# @return [String]
|
|
2452
|
-
attr_accessor :page_token
|
|
2453
|
-
|
|
2454
|
-
# If specified, only annotation sets associated with the given reference set
|
|
2455
|
-
# are returned.
|
|
2456
|
-
# Corresponds to the JSON property `referenceSetId`
|
|
2457
|
-
# @return [String]
|
|
2458
|
-
attr_accessor :reference_set_id
|
|
2459
|
-
|
|
2460
|
-
# If specified, only annotation sets that have any of these types are
|
|
2461
|
-
# returned.
|
|
2462
|
-
# Corresponds to the JSON property `types`
|
|
2463
|
-
# @return [Array<String>]
|
|
2464
|
-
attr_accessor :types
|
|
2465
|
-
|
|
2466
|
-
def initialize(**args)
|
|
2467
|
-
update!(**args)
|
|
2468
|
-
end
|
|
2469
|
-
|
|
2470
|
-
# Update properties of this object
|
|
2471
|
-
def update!(**args)
|
|
2472
|
-
@dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
|
|
2473
|
-
@name = args[:name] if args.key?(:name)
|
|
2474
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
2475
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
2476
|
-
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
|
2477
|
-
@types = args[:types] if args.key?(:types)
|
|
2478
|
-
end
|
|
2479
|
-
end
|
|
2480
|
-
|
|
2481
|
-
#
|
|
2482
|
-
class SearchAnnotationSetsResponse
|
|
2483
|
-
include Google::Apis::Core::Hashable
|
|
2484
|
-
|
|
2485
|
-
# The matching annotation sets.
|
|
2486
|
-
# Corresponds to the JSON property `annotationSets`
|
|
2487
|
-
# @return [Array<Google::Apis::GenomicsV1::AnnotationSet>]
|
|
2488
|
-
attr_accessor :annotation_sets
|
|
2489
|
-
|
|
2490
|
-
# The continuation token, which is used to page through large result sets.
|
|
2491
|
-
# Provide this value in a subsequent request to return the next page of
|
|
2492
|
-
# results. This field will be empty if there aren't any additional results.
|
|
2493
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
2494
|
-
# @return [String]
|
|
2495
|
-
attr_accessor :next_page_token
|
|
2496
|
-
|
|
2497
|
-
def initialize(**args)
|
|
2498
|
-
update!(**args)
|
|
2499
|
-
end
|
|
2500
|
-
|
|
2501
|
-
# Update properties of this object
|
|
2502
|
-
def update!(**args)
|
|
2503
|
-
@annotation_sets = args[:annotation_sets] if args.key?(:annotation_sets)
|
|
2504
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
2505
|
-
end
|
|
2506
|
-
end
|
|
2507
|
-
|
|
2508
|
-
#
|
|
2509
|
-
class SearchAnnotationsRequest
|
|
2510
|
-
include Google::Apis::Core::Hashable
|
|
2511
|
-
|
|
2512
|
-
# Required. The annotation sets to search within. The caller must have
|
|
2513
|
-
# `READ` access to these annotation sets.
|
|
2514
|
-
# All queried annotation sets must have the same type.
|
|
2515
|
-
# Corresponds to the JSON property `annotationSetIds`
|
|
2516
|
-
# @return [Array<String>]
|
|
2517
|
-
attr_accessor :annotation_set_ids
|
|
2518
|
-
|
|
2519
|
-
# The end position of the range on the reference, 0-based exclusive. If
|
|
2520
|
-
# referenceId or
|
|
2521
|
-
# referenceName
|
|
2522
|
-
# must be specified, Defaults to the length of the reference.
|
|
2523
|
-
# Corresponds to the JSON property `end`
|
|
2524
|
-
# @return [Fixnum]
|
|
2525
|
-
attr_accessor :end
|
|
2526
|
-
|
|
2527
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
2528
|
-
# defaults to 256. The maximum value is 2048.
|
|
2529
|
-
# Corresponds to the JSON property `pageSize`
|
|
2530
|
-
# @return [Fixnum]
|
|
2531
|
-
attr_accessor :page_size
|
|
2532
|
-
|
|
2533
|
-
# The continuation token, which is used to page through large result sets.
|
|
2534
|
-
# To get the next page of results, set this parameter to the value of
|
|
2535
|
-
# `nextPageToken` from the previous response.
|
|
2536
|
-
# Corresponds to the JSON property `pageToken`
|
|
2537
|
-
# @return [String]
|
|
2538
|
-
attr_accessor :page_token
|
|
2539
|
-
|
|
2540
|
-
# The ID of the reference to query.
|
|
2541
|
-
# Corresponds to the JSON property `referenceId`
|
|
2542
|
-
# @return [String]
|
|
2543
|
-
attr_accessor :reference_id
|
|
2544
|
-
|
|
2545
|
-
# The name of the reference to query, within the reference set associated
|
|
2546
|
-
# with this query.
|
|
2547
|
-
# Corresponds to the JSON property `referenceName`
|
|
2548
|
-
# @return [String]
|
|
2549
|
-
attr_accessor :reference_name
|
|
2550
|
-
|
|
2551
|
-
# The start position of the range on the reference, 0-based inclusive. If
|
|
2552
|
-
# specified,
|
|
2553
|
-
# referenceId or
|
|
2554
|
-
# referenceName
|
|
2555
|
-
# must be specified. Defaults to 0.
|
|
2556
|
-
# Corresponds to the JSON property `start`
|
|
2557
|
-
# @return [Fixnum]
|
|
2558
|
-
attr_accessor :start
|
|
2559
|
-
|
|
2560
|
-
def initialize(**args)
|
|
2561
|
-
update!(**args)
|
|
2562
|
-
end
|
|
2563
|
-
|
|
2564
|
-
# Update properties of this object
|
|
2565
|
-
def update!(**args)
|
|
2566
|
-
@annotation_set_ids = args[:annotation_set_ids] if args.key?(:annotation_set_ids)
|
|
2567
|
-
@end = args[:end] if args.key?(:end)
|
|
2568
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
2569
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
2570
|
-
@reference_id = args[:reference_id] if args.key?(:reference_id)
|
|
2571
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
|
2572
|
-
@start = args[:start] if args.key?(:start)
|
|
2573
|
-
end
|
|
2574
|
-
end
|
|
2575
|
-
|
|
2576
|
-
#
|
|
2577
|
-
class SearchAnnotationsResponse
|
|
2578
|
-
include Google::Apis::Core::Hashable
|
|
2579
|
-
|
|
2580
|
-
# The matching annotations.
|
|
2581
|
-
# Corresponds to the JSON property `annotations`
|
|
2582
|
-
# @return [Array<Google::Apis::GenomicsV1::Annotation>]
|
|
2583
|
-
attr_accessor :annotations
|
|
2584
|
-
|
|
2585
|
-
# The continuation token, which is used to page through large result sets.
|
|
2586
|
-
# Provide this value in a subsequent request to return the next page of
|
|
2587
|
-
# results. This field will be empty if there aren't any additional results.
|
|
2588
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
2589
|
-
# @return [String]
|
|
2590
|
-
attr_accessor :next_page_token
|
|
2591
|
-
|
|
2592
|
-
def initialize(**args)
|
|
2593
|
-
update!(**args)
|
|
2594
|
-
end
|
|
2595
|
-
|
|
2596
|
-
# Update properties of this object
|
|
2597
|
-
def update!(**args)
|
|
2598
|
-
@annotations = args[:annotations] if args.key?(:annotations)
|
|
2599
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
2600
|
-
end
|
|
2601
|
-
end
|
|
2602
|
-
|
|
2603
|
-
# The call set search request.
|
|
2604
|
-
class SearchCallSetsRequest
|
|
2605
|
-
include Google::Apis::Core::Hashable
|
|
2606
|
-
|
|
2607
|
-
# Only return call sets for which a substring of the name matches this
|
|
2608
|
-
# string.
|
|
2609
|
-
# Corresponds to the JSON property `name`
|
|
2610
|
-
# @return [String]
|
|
2611
|
-
attr_accessor :name
|
|
2612
|
-
|
|
2613
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
2614
|
-
# defaults to 1024.
|
|
2615
|
-
# Corresponds to the JSON property `pageSize`
|
|
2616
|
-
# @return [Fixnum]
|
|
2617
|
-
attr_accessor :page_size
|
|
2618
|
-
|
|
2619
|
-
# The continuation token, which is used to page through large result sets.
|
|
2620
|
-
# To get the next page of results, set this parameter to the value of
|
|
2621
|
-
# `nextPageToken` from the previous response.
|
|
2622
|
-
# Corresponds to the JSON property `pageToken`
|
|
2623
|
-
# @return [String]
|
|
2624
|
-
attr_accessor :page_token
|
|
2625
|
-
|
|
2626
|
-
# Restrict the query to call sets within the given variant sets. At least one
|
|
2627
|
-
# ID must be provided.
|
|
2628
|
-
# Corresponds to the JSON property `variantSetIds`
|
|
2629
|
-
# @return [Array<String>]
|
|
2630
|
-
attr_accessor :variant_set_ids
|
|
2631
|
-
|
|
2632
|
-
def initialize(**args)
|
|
2633
|
-
update!(**args)
|
|
2634
|
-
end
|
|
2635
|
-
|
|
2636
|
-
# Update properties of this object
|
|
2637
|
-
def update!(**args)
|
|
2638
|
-
@name = args[:name] if args.key?(:name)
|
|
2639
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
2640
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
2641
|
-
@variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
|
|
2642
|
-
end
|
|
2643
|
-
end
|
|
2644
|
-
|
|
2645
|
-
# The call set search response.
|
|
2646
|
-
class SearchCallSetsResponse
|
|
2647
|
-
include Google::Apis::Core::Hashable
|
|
2648
|
-
|
|
2649
|
-
# The list of matching call sets.
|
|
2650
|
-
# Corresponds to the JSON property `callSets`
|
|
2651
|
-
# @return [Array<Google::Apis::GenomicsV1::CallSet>]
|
|
2652
|
-
attr_accessor :call_sets
|
|
2653
|
-
|
|
2654
|
-
# The continuation token, which is used to page through large result sets.
|
|
2655
|
-
# Provide this value in a subsequent request to return the next page of
|
|
2656
|
-
# results. This field will be empty if there aren't any additional results.
|
|
2657
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
2658
|
-
# @return [String]
|
|
2659
|
-
attr_accessor :next_page_token
|
|
2660
|
-
|
|
2661
|
-
def initialize(**args)
|
|
2662
|
-
update!(**args)
|
|
2663
|
-
end
|
|
2664
|
-
|
|
2665
|
-
# Update properties of this object
|
|
2666
|
-
def update!(**args)
|
|
2667
|
-
@call_sets = args[:call_sets] if args.key?(:call_sets)
|
|
2668
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
2669
|
-
end
|
|
2670
|
-
end
|
|
2671
|
-
|
|
2672
|
-
# The read group set search request.
|
|
2673
|
-
class SearchReadGroupSetsRequest
|
|
2674
|
-
include Google::Apis::Core::Hashable
|
|
2675
|
-
|
|
2676
|
-
# Restricts this query to read group sets within the given datasets. At least
|
|
2677
|
-
# one ID must be provided.
|
|
2678
|
-
# Corresponds to the JSON property `datasetIds`
|
|
2679
|
-
# @return [Array<String>]
|
|
2680
|
-
attr_accessor :dataset_ids
|
|
2681
|
-
|
|
2682
|
-
# Only return read group sets for which a substring of the name matches this
|
|
2683
|
-
# string.
|
|
2684
|
-
# Corresponds to the JSON property `name`
|
|
2685
|
-
# @return [String]
|
|
2686
|
-
attr_accessor :name
|
|
2687
|
-
|
|
2688
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
2689
|
-
# defaults to 256. The maximum value is 1024.
|
|
2690
|
-
# Corresponds to the JSON property `pageSize`
|
|
2691
|
-
# @return [Fixnum]
|
|
2692
|
-
attr_accessor :page_size
|
|
2693
|
-
|
|
2694
|
-
# The continuation token, which is used to page through large result sets.
|
|
2695
|
-
# To get the next page of results, set this parameter to the value of
|
|
2696
|
-
# `nextPageToken` from the previous response.
|
|
2697
|
-
# Corresponds to the JSON property `pageToken`
|
|
2698
|
-
# @return [String]
|
|
2699
|
-
attr_accessor :page_token
|
|
2700
|
-
|
|
2701
|
-
def initialize(**args)
|
|
2702
|
-
update!(**args)
|
|
2703
|
-
end
|
|
2704
|
-
|
|
2705
|
-
# Update properties of this object
|
|
2706
|
-
def update!(**args)
|
|
2707
|
-
@dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
|
|
2708
|
-
@name = args[:name] if args.key?(:name)
|
|
2709
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
2710
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
2711
|
-
end
|
|
2712
|
-
end
|
|
2713
|
-
|
|
2714
|
-
# The read group set search response.
|
|
2715
|
-
class SearchReadGroupSetsResponse
|
|
2716
|
-
include Google::Apis::Core::Hashable
|
|
2717
|
-
|
|
2718
|
-
# The continuation token, which is used to page through large result sets.
|
|
2719
|
-
# Provide this value in a subsequent request to return the next page of
|
|
2720
|
-
# results. This field will be empty if there aren't any additional results.
|
|
2721
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
2722
|
-
# @return [String]
|
|
2723
|
-
attr_accessor :next_page_token
|
|
2724
|
-
|
|
2725
|
-
# The list of matching read group sets.
|
|
2726
|
-
# Corresponds to the JSON property `readGroupSets`
|
|
2727
|
-
# @return [Array<Google::Apis::GenomicsV1::ReadGroupSet>]
|
|
2728
|
-
attr_accessor :read_group_sets
|
|
2729
|
-
|
|
2730
|
-
def initialize(**args)
|
|
2731
|
-
update!(**args)
|
|
2732
|
-
end
|
|
2733
|
-
|
|
2734
|
-
# Update properties of this object
|
|
2735
|
-
def update!(**args)
|
|
2736
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
2737
|
-
@read_group_sets = args[:read_group_sets] if args.key?(:read_group_sets)
|
|
2738
|
-
end
|
|
2739
|
-
end
|
|
2740
|
-
|
|
2741
|
-
# The read search request.
|
|
2742
|
-
class SearchReadsRequest
|
|
2743
|
-
include Google::Apis::Core::Hashable
|
|
2744
|
-
|
|
2745
|
-
# The end position of the range on the reference, 0-based exclusive. If
|
|
2746
|
-
# specified, `referenceName` must also be specified.
|
|
2747
|
-
# Corresponds to the JSON property `end`
|
|
2748
|
-
# @return [Fixnum]
|
|
2749
|
-
attr_accessor :end
|
|
2750
|
-
|
|
2751
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
2752
|
-
# defaults to 256. The maximum value is 2048.
|
|
2753
|
-
# Corresponds to the JSON property `pageSize`
|
|
2754
|
-
# @return [Fixnum]
|
|
2755
|
-
attr_accessor :page_size
|
|
2756
|
-
|
|
2757
|
-
# The continuation token, which is used to page through large result sets.
|
|
2758
|
-
# To get the next page of results, set this parameter to the value of
|
|
2759
|
-
# `nextPageToken` from the previous response.
|
|
2760
|
-
# Corresponds to the JSON property `pageToken`
|
|
2761
|
-
# @return [String]
|
|
2762
|
-
attr_accessor :page_token
|
|
2763
|
-
|
|
2764
|
-
# The IDs of the read groups within which to search for reads. All specified
|
|
2765
|
-
# read groups must belong to the same read group sets. Must specify one of
|
|
2766
|
-
# `readGroupSetIds` or `readGroupIds`.
|
|
2767
|
-
# Corresponds to the JSON property `readGroupIds`
|
|
2768
|
-
# @return [Array<String>]
|
|
2769
|
-
attr_accessor :read_group_ids
|
|
2770
|
-
|
|
2771
|
-
# The IDs of the read groups sets within which to search for reads. All
|
|
2772
|
-
# specified read group sets must be aligned against a common set of reference
|
|
2773
|
-
# sequences; this defines the genomic coordinates for the query. Must specify
|
|
2774
|
-
# one of `readGroupSetIds` or `readGroupIds`.
|
|
2775
|
-
# Corresponds to the JSON property `readGroupSetIds`
|
|
2776
|
-
# @return [Array<String>]
|
|
2777
|
-
attr_accessor :read_group_set_ids
|
|
2778
|
-
|
|
2779
|
-
# The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
|
|
2780
|
-
# `*`, only unmapped reads are returned. If unspecified, all reads (mapped
|
|
2781
|
-
# and unmapped) are returned.
|
|
2782
|
-
# Corresponds to the JSON property `referenceName`
|
|
2783
|
-
# @return [String]
|
|
2784
|
-
attr_accessor :reference_name
|
|
2785
|
-
|
|
2786
|
-
# The start position of the range on the reference, 0-based inclusive. If
|
|
2787
|
-
# specified, `referenceName` must also be specified.
|
|
2788
|
-
# Corresponds to the JSON property `start`
|
|
2789
|
-
# @return [Fixnum]
|
|
2790
|
-
attr_accessor :start
|
|
2791
|
-
|
|
2792
|
-
def initialize(**args)
|
|
2793
|
-
update!(**args)
|
|
2794
|
-
end
|
|
2795
|
-
|
|
2796
|
-
# Update properties of this object
|
|
2797
|
-
def update!(**args)
|
|
2798
|
-
@end = args[:end] if args.key?(:end)
|
|
2799
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
2800
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
2801
|
-
@read_group_ids = args[:read_group_ids] if args.key?(:read_group_ids)
|
|
2802
|
-
@read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
|
|
2803
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
|
2804
|
-
@start = args[:start] if args.key?(:start)
|
|
2805
|
-
end
|
|
2806
|
-
end
|
|
2807
|
-
|
|
2808
|
-
# The read search response.
|
|
2809
|
-
class SearchReadsResponse
|
|
2810
|
-
include Google::Apis::Core::Hashable
|
|
2811
|
-
|
|
2812
|
-
# The list of matching alignments sorted by mapped genomic coordinate,
|
|
2813
|
-
# if any, ascending in position within the same reference. Unmapped reads,
|
|
2814
|
-
# which have no position, are returned contiguously and are sorted in
|
|
2815
|
-
# ascending lexicographic order by fragment name.
|
|
2816
|
-
# Corresponds to the JSON property `alignments`
|
|
2817
|
-
# @return [Array<Google::Apis::GenomicsV1::Read>]
|
|
2818
|
-
attr_accessor :alignments
|
|
2819
|
-
|
|
2820
|
-
# The continuation token, which is used to page through large result sets.
|
|
2821
|
-
# Provide this value in a subsequent request to return the next page of
|
|
2822
|
-
# results. This field will be empty if there aren't any additional results.
|
|
2823
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
2824
|
-
# @return [String]
|
|
2825
|
-
attr_accessor :next_page_token
|
|
2826
|
-
|
|
2827
|
-
def initialize(**args)
|
|
2828
|
-
update!(**args)
|
|
2829
|
-
end
|
|
2830
|
-
|
|
2831
|
-
# Update properties of this object
|
|
2832
|
-
def update!(**args)
|
|
2833
|
-
@alignments = args[:alignments] if args.key?(:alignments)
|
|
2834
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
2835
|
-
end
|
|
2836
|
-
end
|
|
2837
|
-
|
|
2838
|
-
#
|
|
2839
|
-
class SearchReferenceSetsRequest
|
|
2840
|
-
include Google::Apis::Core::Hashable
|
|
2841
|
-
|
|
2842
|
-
# If present, return reference sets for which a prefix of any of
|
|
2843
|
-
# sourceAccessions
|
|
2844
|
-
# match any of these strings. Accession numbers typically have a main number
|
|
2845
|
-
# and a version, for example `NC_000001.11`.
|
|
2846
|
-
# Corresponds to the JSON property `accessions`
|
|
2847
|
-
# @return [Array<String>]
|
|
2848
|
-
attr_accessor :accessions
|
|
2849
|
-
|
|
2850
|
-
# If present, return reference sets for which a substring of their
|
|
2851
|
-
# `assemblyId` matches this string (case insensitive).
|
|
2852
|
-
# Corresponds to the JSON property `assemblyId`
|
|
2853
|
-
# @return [String]
|
|
2854
|
-
attr_accessor :assembly_id
|
|
2855
|
-
|
|
2856
|
-
# If present, return reference sets for which the
|
|
2857
|
-
# md5checksum matches exactly.
|
|
2858
|
-
# Corresponds to the JSON property `md5checksums`
|
|
2859
|
-
# @return [Array<String>]
|
|
2860
|
-
attr_accessor :md5checksums
|
|
2861
|
-
|
|
2862
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
2863
|
-
# defaults to 1024. The maximum value is 4096.
|
|
2864
|
-
# Corresponds to the JSON property `pageSize`
|
|
2865
|
-
# @return [Fixnum]
|
|
2866
|
-
attr_accessor :page_size
|
|
2867
|
-
|
|
2868
|
-
# The continuation token, which is used to page through large result sets.
|
|
2869
|
-
# To get the next page of results, set this parameter to the value of
|
|
2870
|
-
# `nextPageToken` from the previous response.
|
|
2871
|
-
# Corresponds to the JSON property `pageToken`
|
|
2872
|
-
# @return [String]
|
|
2873
|
-
attr_accessor :page_token
|
|
2874
|
-
|
|
2875
|
-
def initialize(**args)
|
|
2876
|
-
update!(**args)
|
|
2877
|
-
end
|
|
2878
|
-
|
|
2879
|
-
# Update properties of this object
|
|
2880
|
-
def update!(**args)
|
|
2881
|
-
@accessions = args[:accessions] if args.key?(:accessions)
|
|
2882
|
-
@assembly_id = args[:assembly_id] if args.key?(:assembly_id)
|
|
2883
|
-
@md5checksums = args[:md5checksums] if args.key?(:md5checksums)
|
|
2884
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
2885
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
2886
|
-
end
|
|
2887
|
-
end
|
|
2888
|
-
|
|
2889
|
-
#
|
|
2890
|
-
class SearchReferenceSetsResponse
|
|
2891
|
-
include Google::Apis::Core::Hashable
|
|
2892
|
-
|
|
2893
|
-
# The continuation token, which is used to page through large result sets.
|
|
2894
|
-
# Provide this value in a subsequent request to return the next page of
|
|
2895
|
-
# results. This field will be empty if there aren't any additional results.
|
|
2896
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
2897
|
-
# @return [String]
|
|
2898
|
-
attr_accessor :next_page_token
|
|
2899
|
-
|
|
2900
|
-
# The matching references sets.
|
|
2901
|
-
# Corresponds to the JSON property `referenceSets`
|
|
2902
|
-
# @return [Array<Google::Apis::GenomicsV1::ReferenceSet>]
|
|
2903
|
-
attr_accessor :reference_sets
|
|
2904
|
-
|
|
2905
|
-
def initialize(**args)
|
|
2906
|
-
update!(**args)
|
|
2907
|
-
end
|
|
2908
|
-
|
|
2909
|
-
# Update properties of this object
|
|
2910
|
-
def update!(**args)
|
|
2911
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
2912
|
-
@reference_sets = args[:reference_sets] if args.key?(:reference_sets)
|
|
2913
|
-
end
|
|
2914
|
-
end
|
|
2915
|
-
|
|
2916
|
-
#
|
|
2917
|
-
class SearchReferencesRequest
|
|
2918
|
-
include Google::Apis::Core::Hashable
|
|
2919
|
-
|
|
2920
|
-
# If present, return references for which a prefix of any of
|
|
2921
|
-
# sourceAccessions match
|
|
2922
|
-
# any of these strings. Accession numbers typically have a main number and a
|
|
2923
|
-
# version, for example `GCF_000001405.26`.
|
|
2924
|
-
# Corresponds to the JSON property `accessions`
|
|
2925
|
-
# @return [Array<String>]
|
|
2926
|
-
attr_accessor :accessions
|
|
2927
|
-
|
|
2928
|
-
# If present, return references for which the
|
|
2929
|
-
# md5checksum matches exactly.
|
|
2930
|
-
# Corresponds to the JSON property `md5checksums`
|
|
2931
|
-
# @return [Array<String>]
|
|
2932
|
-
attr_accessor :md5checksums
|
|
2933
|
-
|
|
2934
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
2935
|
-
# defaults to 1024. The maximum value is 4096.
|
|
2936
|
-
# Corresponds to the JSON property `pageSize`
|
|
2937
|
-
# @return [Fixnum]
|
|
2938
|
-
attr_accessor :page_size
|
|
2939
|
-
|
|
2940
|
-
# The continuation token, which is used to page through large result sets.
|
|
2941
|
-
# To get the next page of results, set this parameter to the value of
|
|
2942
|
-
# `nextPageToken` from the previous response.
|
|
2943
|
-
# Corresponds to the JSON property `pageToken`
|
|
2944
|
-
# @return [String]
|
|
2945
|
-
attr_accessor :page_token
|
|
2946
|
-
|
|
2947
|
-
# If present, return only references which belong to this reference set.
|
|
2948
|
-
# Corresponds to the JSON property `referenceSetId`
|
|
2949
|
-
# @return [String]
|
|
2950
|
-
attr_accessor :reference_set_id
|
|
2951
|
-
|
|
2952
|
-
def initialize(**args)
|
|
2953
|
-
update!(**args)
|
|
2954
|
-
end
|
|
2955
|
-
|
|
2956
|
-
# Update properties of this object
|
|
2957
|
-
def update!(**args)
|
|
2958
|
-
@accessions = args[:accessions] if args.key?(:accessions)
|
|
2959
|
-
@md5checksums = args[:md5checksums] if args.key?(:md5checksums)
|
|
2960
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
2961
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
2962
|
-
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
|
2963
|
-
end
|
|
2964
|
-
end
|
|
2965
|
-
|
|
2966
|
-
#
|
|
2967
|
-
class SearchReferencesResponse
|
|
2968
|
-
include Google::Apis::Core::Hashable
|
|
2969
|
-
|
|
2970
|
-
# The continuation token, which is used to page through large result sets.
|
|
2971
|
-
# Provide this value in a subsequent request to return the next page of
|
|
2972
|
-
# results. This field will be empty if there aren't any additional results.
|
|
2973
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
2974
|
-
# @return [String]
|
|
2975
|
-
attr_accessor :next_page_token
|
|
2976
|
-
|
|
2977
|
-
# The matching references.
|
|
2978
|
-
# Corresponds to the JSON property `references`
|
|
2979
|
-
# @return [Array<Google::Apis::GenomicsV1::Reference>]
|
|
2980
|
-
attr_accessor :references
|
|
2981
|
-
|
|
2982
|
-
def initialize(**args)
|
|
2983
|
-
update!(**args)
|
|
2984
|
-
end
|
|
2985
|
-
|
|
2986
|
-
# Update properties of this object
|
|
2987
|
-
def update!(**args)
|
|
2988
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
2989
|
-
@references = args[:references] if args.key?(:references)
|
|
2990
|
-
end
|
|
2991
|
-
end
|
|
2992
|
-
|
|
2993
|
-
# The search variant sets request.
|
|
2994
|
-
class SearchVariantSetsRequest
|
|
2995
|
-
include Google::Apis::Core::Hashable
|
|
2996
|
-
|
|
2997
|
-
# Exactly one dataset ID must be provided here. Only variant sets which
|
|
2998
|
-
# belong to this dataset will be returned.
|
|
2999
|
-
# Corresponds to the JSON property `datasetIds`
|
|
3000
|
-
# @return [Array<String>]
|
|
3001
|
-
attr_accessor :dataset_ids
|
|
3002
|
-
|
|
3003
|
-
# The maximum number of results to return in a single page. If unspecified,
|
|
3004
|
-
# defaults to 1024.
|
|
3005
|
-
# Corresponds to the JSON property `pageSize`
|
|
3006
|
-
# @return [Fixnum]
|
|
3007
|
-
attr_accessor :page_size
|
|
3008
|
-
|
|
3009
|
-
# The continuation token, which is used to page through large result sets.
|
|
3010
|
-
# To get the next page of results, set this parameter to the value of
|
|
3011
|
-
# `nextPageToken` from the previous response.
|
|
3012
|
-
# Corresponds to the JSON property `pageToken`
|
|
3013
|
-
# @return [String]
|
|
3014
|
-
attr_accessor :page_token
|
|
3015
|
-
|
|
3016
|
-
def initialize(**args)
|
|
3017
|
-
update!(**args)
|
|
3018
|
-
end
|
|
3019
|
-
|
|
3020
|
-
# Update properties of this object
|
|
3021
|
-
def update!(**args)
|
|
3022
|
-
@dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
|
|
3023
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
3024
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
3025
|
-
end
|
|
3026
|
-
end
|
|
3027
|
-
|
|
3028
|
-
# The search variant sets response.
|
|
3029
|
-
class SearchVariantSetsResponse
|
|
3030
|
-
include Google::Apis::Core::Hashable
|
|
3031
|
-
|
|
3032
|
-
# The continuation token, which is used to page through large result sets.
|
|
3033
|
-
# Provide this value in a subsequent request to return the next page of
|
|
3034
|
-
# results. This field will be empty if there aren't any additional results.
|
|
3035
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
3036
|
-
# @return [String]
|
|
3037
|
-
attr_accessor :next_page_token
|
|
3038
|
-
|
|
3039
|
-
# The variant sets belonging to the requested dataset.
|
|
3040
|
-
# Corresponds to the JSON property `variantSets`
|
|
3041
|
-
# @return [Array<Google::Apis::GenomicsV1::VariantSet>]
|
|
3042
|
-
attr_accessor :variant_sets
|
|
3043
|
-
|
|
3044
|
-
def initialize(**args)
|
|
3045
|
-
update!(**args)
|
|
3046
|
-
end
|
|
3047
|
-
|
|
3048
|
-
# Update properties of this object
|
|
3049
|
-
def update!(**args)
|
|
3050
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
3051
|
-
@variant_sets = args[:variant_sets] if args.key?(:variant_sets)
|
|
3052
|
-
end
|
|
3053
|
-
end
|
|
3054
|
-
|
|
3055
|
-
# The variant search request.
|
|
3056
|
-
class SearchVariantsRequest
|
|
3057
|
-
include Google::Apis::Core::Hashable
|
|
3058
|
-
|
|
3059
|
-
# Only return variant calls which belong to call sets with these ids.
|
|
3060
|
-
# Leaving this blank returns all variant calls. If a variant has no
|
|
3061
|
-
# calls belonging to any of these call sets, it won't be returned at all.
|
|
3062
|
-
# Corresponds to the JSON property `callSetIds`
|
|
3063
|
-
# @return [Array<String>]
|
|
3064
|
-
attr_accessor :call_set_ids
|
|
3065
|
-
|
|
3066
|
-
# The end of the window, 0-based exclusive. If unspecified or 0, defaults to
|
|
3067
|
-
# the length of the reference.
|
|
3068
|
-
# Corresponds to the JSON property `end`
|
|
3069
|
-
# @return [Fixnum]
|
|
3070
|
-
attr_accessor :end
|
|
3071
|
-
|
|
3072
|
-
# The maximum number of calls to return in a single page. Note that this
|
|
3073
|
-
# limit may be exceeded in the event that a matching variant contains more
|
|
3074
|
-
# calls than the requested maximum. If unspecified, defaults to 5000. The
|
|
3075
|
-
# maximum value is 10000.
|
|
3076
|
-
# Corresponds to the JSON property `maxCalls`
|
|
3077
|
-
# @return [Fixnum]
|
|
3078
|
-
attr_accessor :max_calls
|
|
3079
|
-
|
|
3080
|
-
# The maximum number of variants to return in a single page. If unspecified,
|
|
3081
|
-
# defaults to 5000. The maximum value is 10000.
|
|
3082
|
-
# Corresponds to the JSON property `pageSize`
|
|
3083
|
-
# @return [Fixnum]
|
|
3084
|
-
attr_accessor :page_size
|
|
3085
|
-
|
|
3086
|
-
# The continuation token, which is used to page through large result sets.
|
|
3087
|
-
# To get the next page of results, set this parameter to the value of
|
|
3088
|
-
# `nextPageToken` from the previous response.
|
|
3089
|
-
# Corresponds to the JSON property `pageToken`
|
|
3090
|
-
# @return [String]
|
|
3091
|
-
attr_accessor :page_token
|
|
3092
|
-
|
|
3093
|
-
# Required. Only return variants in this reference sequence.
|
|
3094
|
-
# Corresponds to the JSON property `referenceName`
|
|
3095
|
-
# @return [String]
|
|
3096
|
-
attr_accessor :reference_name
|
|
3097
|
-
|
|
3098
|
-
# The beginning of the window (0-based, inclusive) for which
|
|
3099
|
-
# overlapping variants should be returned. If unspecified, defaults to 0.
|
|
3100
|
-
# Corresponds to the JSON property `start`
|
|
3101
|
-
# @return [Fixnum]
|
|
3102
|
-
attr_accessor :start
|
|
3103
|
-
|
|
3104
|
-
# Only return variants which have exactly this name.
|
|
3105
|
-
# Corresponds to the JSON property `variantName`
|
|
3106
|
-
# @return [String]
|
|
3107
|
-
attr_accessor :variant_name
|
|
3108
|
-
|
|
3109
|
-
# At most one variant set ID must be provided. Only variants from this
|
|
3110
|
-
# variant set will be returned. If omitted, a call set id must be included in
|
|
3111
|
-
# the request.
|
|
3112
|
-
# Corresponds to the JSON property `variantSetIds`
|
|
3113
|
-
# @return [Array<String>]
|
|
3114
|
-
attr_accessor :variant_set_ids
|
|
3115
|
-
|
|
3116
|
-
def initialize(**args)
|
|
3117
|
-
update!(**args)
|
|
3118
|
-
end
|
|
3119
|
-
|
|
3120
|
-
# Update properties of this object
|
|
3121
|
-
def update!(**args)
|
|
3122
|
-
@call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
|
|
3123
|
-
@end = args[:end] if args.key?(:end)
|
|
3124
|
-
@max_calls = args[:max_calls] if args.key?(:max_calls)
|
|
3125
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
|
3126
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
|
3127
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
|
3128
|
-
@start = args[:start] if args.key?(:start)
|
|
3129
|
-
@variant_name = args[:variant_name] if args.key?(:variant_name)
|
|
3130
|
-
@variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
|
|
3131
|
-
end
|
|
3132
|
-
end
|
|
3133
|
-
|
|
3134
|
-
# The variant search response.
|
|
3135
|
-
class SearchVariantsResponse
|
|
3136
|
-
include Google::Apis::Core::Hashable
|
|
3137
|
-
|
|
3138
|
-
# The continuation token, which is used to page through large result sets.
|
|
3139
|
-
# Provide this value in a subsequent request to return the next page of
|
|
3140
|
-
# results. This field will be empty if there aren't any additional results.
|
|
3141
|
-
# Corresponds to the JSON property `nextPageToken`
|
|
3142
|
-
# @return [String]
|
|
3143
|
-
attr_accessor :next_page_token
|
|
3144
|
-
|
|
3145
|
-
# The list of matching Variants.
|
|
3146
|
-
# Corresponds to the JSON property `variants`
|
|
3147
|
-
# @return [Array<Google::Apis::GenomicsV1::Variant>]
|
|
3148
|
-
attr_accessor :variants
|
|
3149
|
-
|
|
3150
|
-
def initialize(**args)
|
|
3151
|
-
update!(**args)
|
|
3152
|
-
end
|
|
3153
|
-
|
|
3154
|
-
# Update properties of this object
|
|
3155
|
-
def update!(**args)
|
|
3156
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
|
3157
|
-
@variants = args[:variants] if args.key?(:variants)
|
|
3158
|
-
end
|
|
3159
|
-
end
|
|
3160
|
-
|
|
3161
|
-
# Request message for `SetIamPolicy` method.
|
|
3162
|
-
class SetIamPolicyRequest
|
|
3163
|
-
include Google::Apis::Core::Hashable
|
|
3164
|
-
|
|
3165
|
-
# Defines an Identity and Access Management (IAM) policy. It is used to
|
|
3166
|
-
# specify access control policies for Cloud Platform resources.
|
|
3167
|
-
# A `Policy` consists of a list of `bindings`. A `binding` binds a list of
|
|
3168
|
-
# `members` to a `role`, where the members can be user accounts, Google groups,
|
|
3169
|
-
# Google domains, and service accounts. A `role` is a named list of permissions
|
|
3170
|
-
# defined by IAM.
|
|
3171
|
-
# **JSON Example**
|
|
3172
|
-
# `
|
|
3173
|
-
# "bindings": [
|
|
3174
|
-
# `
|
|
3175
|
-
# "role": "roles/owner",
|
|
3176
|
-
# "members": [
|
|
3177
|
-
# "user:mike@example.com",
|
|
3178
|
-
# "group:admins@example.com",
|
|
3179
|
-
# "domain:google.com",
|
|
3180
|
-
# "serviceAccount:my-other-app@appspot.gserviceaccount.com"
|
|
3181
|
-
# ]
|
|
3182
|
-
# `,
|
|
3183
|
-
# `
|
|
3184
|
-
# "role": "roles/viewer",
|
|
3185
|
-
# "members": ["user:sean@example.com"]
|
|
3186
|
-
# `
|
|
3187
|
-
# ]
|
|
3188
|
-
# `
|
|
3189
|
-
# **YAML Example**
|
|
3190
|
-
# bindings:
|
|
3191
|
-
# - members:
|
|
3192
|
-
# - user:mike@example.com
|
|
3193
|
-
# - group:admins@example.com
|
|
3194
|
-
# - domain:google.com
|
|
3195
|
-
# - serviceAccount:my-other-app@appspot.gserviceaccount.com
|
|
3196
|
-
# role: roles/owner
|
|
3197
|
-
# - members:
|
|
3198
|
-
# - user:sean@example.com
|
|
3199
|
-
# role: roles/viewer
|
|
3200
|
-
# For a description of IAM and its features, see the
|
|
3201
|
-
# [IAM developer's guide](https://cloud.google.com/iam/docs).
|
|
3202
|
-
# Corresponds to the JSON property `policy`
|
|
3203
|
-
# @return [Google::Apis::GenomicsV1::Policy]
|
|
3204
|
-
attr_accessor :policy
|
|
3205
|
-
|
|
3206
|
-
def initialize(**args)
|
|
3207
|
-
update!(**args)
|
|
3208
|
-
end
|
|
3209
|
-
|
|
3210
|
-
# Update properties of this object
|
|
3211
|
-
def update!(**args)
|
|
3212
|
-
@policy = args[:policy] if args.key?(:policy)
|
|
567
|
+
@compute_engine = args[:compute_engine] if args.key?(:compute_engine)
|
|
3213
568
|
end
|
|
3214
569
|
end
|
|
3215
570
|
|
|
3216
|
-
# The `Status` type defines a logical error model that is suitable for
|
|
3217
|
-
# programming environments, including REST APIs and RPC APIs. It is
|
|
3218
|
-
# [gRPC](https://github.com/grpc). The error model is designed to be:
|
|
571
|
+
# The `Status` type defines a logical error model that is suitable for
|
|
572
|
+
# different programming environments, including REST APIs and RPC APIs. It is
|
|
573
|
+
# used by [gRPC](https://github.com/grpc). The error model is designed to be:
|
|
3219
574
|
# - Simple to use and understand for most users
|
|
3220
575
|
# - Flexible enough to meet unexpected needs
|
|
3221
576
|
# # Overview
|
|
3222
|
-
# The `Status` message contains three pieces of data: error code, error
|
|
3223
|
-
# and error details. The error code should be an enum value of
|
|
577
|
+
# The `Status` message contains three pieces of data: error code, error
|
|
578
|
+
# message, and error details. The error code should be an enum value of
|
|
3224
579
|
# google.rpc.Code, but it may accept additional error codes if needed. The
|
|
3225
580
|
# error message should be a developer-facing English message that helps
|
|
3226
581
|
# developers *understand* and *resolve* the error. If a localized user-facing
|
|
@@ -3285,120 +640,6 @@ module Google
|
|
|
3285
640
|
end
|
|
3286
641
|
end
|
|
3287
642
|
|
|
3288
|
-
# Request message for `TestIamPermissions` method.
|
|
3289
|
-
class TestIamPermissionsRequest
|
|
3290
|
-
include Google::Apis::Core::Hashable
|
|
3291
|
-
|
|
3292
|
-
# REQUIRED: The set of permissions to check for the 'resource'.
|
|
3293
|
-
# Permissions with wildcards (such as '*' or 'storage.*') are not allowed.
|
|
3294
|
-
# Allowed permissions are:
|
|
3295
|
-
# * `genomics.datasets.create`
|
|
3296
|
-
# * `genomics.datasets.delete`
|
|
3297
|
-
# * `genomics.datasets.get`
|
|
3298
|
-
# * `genomics.datasets.list`
|
|
3299
|
-
# * `genomics.datasets.update`
|
|
3300
|
-
# * `genomics.datasets.getIamPolicy`
|
|
3301
|
-
# * `genomics.datasets.setIamPolicy`
|
|
3302
|
-
# Corresponds to the JSON property `permissions`
|
|
3303
|
-
# @return [Array<String>]
|
|
3304
|
-
attr_accessor :permissions
|
|
3305
|
-
|
|
3306
|
-
def initialize(**args)
|
|
3307
|
-
update!(**args)
|
|
3308
|
-
end
|
|
3309
|
-
|
|
3310
|
-
# Update properties of this object
|
|
3311
|
-
def update!(**args)
|
|
3312
|
-
@permissions = args[:permissions] if args.key?(:permissions)
|
|
3313
|
-
end
|
|
3314
|
-
end
|
|
3315
|
-
|
|
3316
|
-
# Response message for `TestIamPermissions` method.
|
|
3317
|
-
class TestIamPermissionsResponse
|
|
3318
|
-
include Google::Apis::Core::Hashable
|
|
3319
|
-
|
|
3320
|
-
# A subset of `TestPermissionsRequest.permissions` that the caller is
|
|
3321
|
-
# allowed.
|
|
3322
|
-
# Corresponds to the JSON property `permissions`
|
|
3323
|
-
# @return [Array<String>]
|
|
3324
|
-
attr_accessor :permissions
|
|
3325
|
-
|
|
3326
|
-
def initialize(**args)
|
|
3327
|
-
update!(**args)
|
|
3328
|
-
end
|
|
3329
|
-
|
|
3330
|
-
# Update properties of this object
|
|
3331
|
-
def update!(**args)
|
|
3332
|
-
@permissions = args[:permissions] if args.key?(:permissions)
|
|
3333
|
-
end
|
|
3334
|
-
end
|
|
3335
|
-
|
|
3336
|
-
# A transcript represents the assertion that a particular region of the
|
|
3337
|
-
# reference genome may be transcribed as RNA.
|
|
3338
|
-
class Transcript
|
|
3339
|
-
include Google::Apis::Core::Hashable
|
|
3340
|
-
|
|
3341
|
-
# The range of the coding sequence for this transcript, if any. To determine
|
|
3342
|
-
# the exact ranges of coding sequence, intersect this range with those of the
|
|
3343
|
-
# exons, if any. If there are any
|
|
3344
|
-
# exons, the
|
|
3345
|
-
# codingSequence must start
|
|
3346
|
-
# and end within them.
|
|
3347
|
-
# Note that in some cases, the reference genome will not exactly match the
|
|
3348
|
-
# observed mRNA transcript e.g. due to variance in the source genome from
|
|
3349
|
-
# reference. In these cases,
|
|
3350
|
-
# exon.frame will not necessarily
|
|
3351
|
-
# match the expected reference reading frame and coding exon reference bases
|
|
3352
|
-
# cannot necessarily be concatenated to produce the original transcript mRNA.
|
|
3353
|
-
# Corresponds to the JSON property `codingSequence`
|
|
3354
|
-
# @return [Google::Apis::GenomicsV1::CodingSequence]
|
|
3355
|
-
attr_accessor :coding_sequence
|
|
3356
|
-
|
|
3357
|
-
# The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
|
|
3358
|
-
# this transcript. This field should be unset for genomes where transcript
|
|
3359
|
-
# splicing does not occur, for example prokaryotes.
|
|
3360
|
-
# Introns are regions of the transcript that are not included in the
|
|
3361
|
-
# spliced RNA product. Though not explicitly modeled here, intron ranges can
|
|
3362
|
-
# be deduced; all regions of this transcript that are not exons are introns.
|
|
3363
|
-
# Exonic sequences do not necessarily code for a translational product
|
|
3364
|
-
# (amino acids). Only the regions of exons bounded by the
|
|
3365
|
-
# codingSequence correspond
|
|
3366
|
-
# to coding DNA sequence.
|
|
3367
|
-
# Exons are ordered by start position and may not overlap.
|
|
3368
|
-
# Corresponds to the JSON property `exons`
|
|
3369
|
-
# @return [Array<Google::Apis::GenomicsV1::Exon>]
|
|
3370
|
-
attr_accessor :exons
|
|
3371
|
-
|
|
3372
|
-
# The annotation ID of the gene from which this transcript is transcribed.
|
|
3373
|
-
# Corresponds to the JSON property `geneId`
|
|
3374
|
-
# @return [String]
|
|
3375
|
-
attr_accessor :gene_id
|
|
3376
|
-
|
|
3377
|
-
def initialize(**args)
|
|
3378
|
-
update!(**args)
|
|
3379
|
-
end
|
|
3380
|
-
|
|
3381
|
-
# Update properties of this object
|
|
3382
|
-
def update!(**args)
|
|
3383
|
-
@coding_sequence = args[:coding_sequence] if args.key?(:coding_sequence)
|
|
3384
|
-
@exons = args[:exons] if args.key?(:exons)
|
|
3385
|
-
@gene_id = args[:gene_id] if args.key?(:gene_id)
|
|
3386
|
-
end
|
|
3387
|
-
end
|
|
3388
|
-
|
|
3389
|
-
#
|
|
3390
|
-
class UndeleteDatasetRequest
|
|
3391
|
-
include Google::Apis::Core::Hashable
|
|
3392
|
-
|
|
3393
|
-
def initialize(**args)
|
|
3394
|
-
update!(**args)
|
|
3395
|
-
end
|
|
3396
|
-
|
|
3397
|
-
# Update properties of this object
|
|
3398
|
-
def update!(**args)
|
|
3399
|
-
end
|
|
3400
|
-
end
|
|
3401
|
-
|
|
3402
643
|
# An event generated when the execution of a container results in a
|
|
3403
644
|
# non-zero exit status that was not otherwise ignored. Execution will
|
|
3404
645
|
# continue, but only actions that are flagged as `ALWAYS_RUN` will be
|
|
@@ -3427,378 +668,6 @@ module Google
|
|
|
3427
668
|
end
|
|
3428
669
|
end
|
|
3429
670
|
|
|
3430
|
-
# A variant represents a change in DNA sequence relative to a reference
|
|
3431
|
-
# sequence. For example, a variant could represent a SNP or an insertion.
|
|
3432
|
-
# Variants belong to a variant set.
|
|
3433
|
-
# Each of the calls on a variant represent a determination of genotype with
|
|
3434
|
-
# respect to that variant. For example, a call might assign probability of 0.32
|
|
3435
|
-
# to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
|
|
3436
|
-
# belongs to a call set, which contains related calls typically from one
|
|
3437
|
-
# sample.
|
|
3438
|
-
class Variant
|
|
3439
|
-
include Google::Apis::Core::Hashable
|
|
3440
|
-
|
|
3441
|
-
# The bases that appear instead of the reference bases.
|
|
3442
|
-
# Corresponds to the JSON property `alternateBases`
|
|
3443
|
-
# @return [Array<String>]
|
|
3444
|
-
attr_accessor :alternate_bases
|
|
3445
|
-
|
|
3446
|
-
# The variant calls for this particular variant. Each one represents the
|
|
3447
|
-
# determination of genotype with respect to this variant.
|
|
3448
|
-
# Corresponds to the JSON property `calls`
|
|
3449
|
-
# @return [Array<Google::Apis::GenomicsV1::VariantCall>]
|
|
3450
|
-
attr_accessor :calls
|
|
3451
|
-
|
|
3452
|
-
# The date this variant was created, in milliseconds from the epoch.
|
|
3453
|
-
# Corresponds to the JSON property `created`
|
|
3454
|
-
# @return [Fixnum]
|
|
3455
|
-
attr_accessor :created
|
|
3456
|
-
|
|
3457
|
-
# The end position (0-based) of this variant. This corresponds to the first
|
|
3458
|
-
# base after the last base in the reference allele. So, the length of
|
|
3459
|
-
# the reference allele is (end - start). This is useful for variants
|
|
3460
|
-
# that don't explicitly give alternate bases, for example large deletions.
|
|
3461
|
-
# Corresponds to the JSON property `end`
|
|
3462
|
-
# @return [Fixnum]
|
|
3463
|
-
attr_accessor :end
|
|
3464
|
-
|
|
3465
|
-
# A list of filters (normally quality filters) this variant has failed.
|
|
3466
|
-
# `PASS` indicates this variant has passed all filters.
|
|
3467
|
-
# Corresponds to the JSON property `filter`
|
|
3468
|
-
# @return [Array<String>]
|
|
3469
|
-
attr_accessor :filter
|
|
3470
|
-
|
|
3471
|
-
# The server-generated variant ID, unique across all variants.
|
|
3472
|
-
# Corresponds to the JSON property `id`
|
|
3473
|
-
# @return [String]
|
|
3474
|
-
attr_accessor :id
|
|
3475
|
-
|
|
3476
|
-
# A map of additional variant information. This must be of the form
|
|
3477
|
-
# map<string, string[]> (string key mapping to a list of string values).
|
|
3478
|
-
# Corresponds to the JSON property `info`
|
|
3479
|
-
# @return [Hash<String,Array<Object>>]
|
|
3480
|
-
attr_accessor :info
|
|
3481
|
-
|
|
3482
|
-
# Names for the variant, for example a RefSNP ID.
|
|
3483
|
-
# Corresponds to the JSON property `names`
|
|
3484
|
-
# @return [Array<String>]
|
|
3485
|
-
attr_accessor :names
|
|
3486
|
-
|
|
3487
|
-
# A measure of how likely this variant is to be real.
|
|
3488
|
-
# A higher value is better.
|
|
3489
|
-
# Corresponds to the JSON property `quality`
|
|
3490
|
-
# @return [Float]
|
|
3491
|
-
attr_accessor :quality
|
|
3492
|
-
|
|
3493
|
-
# The reference bases for this variant. They start at the given
|
|
3494
|
-
# position.
|
|
3495
|
-
# Corresponds to the JSON property `referenceBases`
|
|
3496
|
-
# @return [String]
|
|
3497
|
-
attr_accessor :reference_bases
|
|
3498
|
-
|
|
3499
|
-
# The reference on which this variant occurs.
|
|
3500
|
-
# (such as `chr20` or `X`)
|
|
3501
|
-
# Corresponds to the JSON property `referenceName`
|
|
3502
|
-
# @return [String]
|
|
3503
|
-
attr_accessor :reference_name
|
|
3504
|
-
|
|
3505
|
-
# The position at which this variant occurs (0-based).
|
|
3506
|
-
# This corresponds to the first base of the string of reference bases.
|
|
3507
|
-
# Corresponds to the JSON property `start`
|
|
3508
|
-
# @return [Fixnum]
|
|
3509
|
-
attr_accessor :start
|
|
3510
|
-
|
|
3511
|
-
# The ID of the variant set this variant belongs to.
|
|
3512
|
-
# Corresponds to the JSON property `variantSetId`
|
|
3513
|
-
# @return [String]
|
|
3514
|
-
attr_accessor :variant_set_id
|
|
3515
|
-
|
|
3516
|
-
def initialize(**args)
|
|
3517
|
-
update!(**args)
|
|
3518
|
-
end
|
|
3519
|
-
|
|
3520
|
-
# Update properties of this object
|
|
3521
|
-
def update!(**args)
|
|
3522
|
-
@alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
|
|
3523
|
-
@calls = args[:calls] if args.key?(:calls)
|
|
3524
|
-
@created = args[:created] if args.key?(:created)
|
|
3525
|
-
@end = args[:end] if args.key?(:end)
|
|
3526
|
-
@filter = args[:filter] if args.key?(:filter)
|
|
3527
|
-
@id = args[:id] if args.key?(:id)
|
|
3528
|
-
@info = args[:info] if args.key?(:info)
|
|
3529
|
-
@names = args[:names] if args.key?(:names)
|
|
3530
|
-
@quality = args[:quality] if args.key?(:quality)
|
|
3531
|
-
@reference_bases = args[:reference_bases] if args.key?(:reference_bases)
|
|
3532
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
|
3533
|
-
@start = args[:start] if args.key?(:start)
|
|
3534
|
-
@variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
|
|
3535
|
-
end
|
|
3536
|
-
end
|
|
3537
|
-
|
|
3538
|
-
#
|
|
3539
|
-
class VariantAnnotation
|
|
3540
|
-
include Google::Apis::Core::Hashable
|
|
3541
|
-
|
|
3542
|
-
# The alternate allele for this variant. If multiple alternate alleles
|
|
3543
|
-
# exist at this location, create a separate variant for each one, as they
|
|
3544
|
-
# may represent distinct conditions.
|
|
3545
|
-
# Corresponds to the JSON property `alternateBases`
|
|
3546
|
-
# @return [String]
|
|
3547
|
-
attr_accessor :alternate_bases
|
|
3548
|
-
|
|
3549
|
-
# Describes the clinical significance of a variant.
|
|
3550
|
-
# It is adapted from the ClinVar controlled vocabulary for clinical
|
|
3551
|
-
# significance described at:
|
|
3552
|
-
# http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
|
|
3553
|
-
# Corresponds to the JSON property `clinicalSignificance`
|
|
3554
|
-
# @return [String]
|
|
3555
|
-
attr_accessor :clinical_significance
|
|
3556
|
-
|
|
3557
|
-
# The set of conditions associated with this variant.
|
|
3558
|
-
# A condition describes the way a variant influences human health.
|
|
3559
|
-
# Corresponds to the JSON property `conditions`
|
|
3560
|
-
# @return [Array<Google::Apis::GenomicsV1::ClinicalCondition>]
|
|
3561
|
-
attr_accessor :conditions
|
|
3562
|
-
|
|
3563
|
-
# Effect of the variant on the coding sequence.
|
|
3564
|
-
# Corresponds to the JSON property `effect`
|
|
3565
|
-
# @return [String]
|
|
3566
|
-
attr_accessor :effect
|
|
3567
|
-
|
|
3568
|
-
# Google annotation ID of the gene affected by this variant. This should
|
|
3569
|
-
# be provided when the variant is created.
|
|
3570
|
-
# Corresponds to the JSON property `geneId`
|
|
3571
|
-
# @return [String]
|
|
3572
|
-
attr_accessor :gene_id
|
|
3573
|
-
|
|
3574
|
-
# Google annotation IDs of the transcripts affected by this variant. These
|
|
3575
|
-
# should be provided when the variant is created.
|
|
3576
|
-
# Corresponds to the JSON property `transcriptIds`
|
|
3577
|
-
# @return [Array<String>]
|
|
3578
|
-
attr_accessor :transcript_ids
|
|
3579
|
-
|
|
3580
|
-
# Type has been adapted from ClinVar's list of variant types.
|
|
3581
|
-
# Corresponds to the JSON property `type`
|
|
3582
|
-
# @return [String]
|
|
3583
|
-
attr_accessor :type
|
|
3584
|
-
|
|
3585
|
-
def initialize(**args)
|
|
3586
|
-
update!(**args)
|
|
3587
|
-
end
|
|
3588
|
-
|
|
3589
|
-
# Update properties of this object
|
|
3590
|
-
def update!(**args)
|
|
3591
|
-
@alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
|
|
3592
|
-
@clinical_significance = args[:clinical_significance] if args.key?(:clinical_significance)
|
|
3593
|
-
@conditions = args[:conditions] if args.key?(:conditions)
|
|
3594
|
-
@effect = args[:effect] if args.key?(:effect)
|
|
3595
|
-
@gene_id = args[:gene_id] if args.key?(:gene_id)
|
|
3596
|
-
@transcript_ids = args[:transcript_ids] if args.key?(:transcript_ids)
|
|
3597
|
-
@type = args[:type] if args.key?(:type)
|
|
3598
|
-
end
|
|
3599
|
-
end
|
|
3600
|
-
|
|
3601
|
-
# A call represents the determination of genotype with respect to a particular
|
|
3602
|
-
# variant. It may include associated information such as quality and phasing.
|
|
3603
|
-
# For example, a call might assign a probability of 0.32 to the occurrence of
|
|
3604
|
-
# a SNP named rs1234 in a call set with the name NA12345.
|
|
3605
|
-
class VariantCall
|
|
3606
|
-
include Google::Apis::Core::Hashable
|
|
3607
|
-
|
|
3608
|
-
# The ID of the call set this variant call belongs to.
|
|
3609
|
-
# Corresponds to the JSON property `callSetId`
|
|
3610
|
-
# @return [String]
|
|
3611
|
-
attr_accessor :call_set_id
|
|
3612
|
-
|
|
3613
|
-
# The name of the call set this variant call belongs to.
|
|
3614
|
-
# Corresponds to the JSON property `callSetName`
|
|
3615
|
-
# @return [String]
|
|
3616
|
-
attr_accessor :call_set_name
|
|
3617
|
-
|
|
3618
|
-
# The genotype of this variant call. Each value represents either the value
|
|
3619
|
-
# of the `referenceBases` field or a 1-based index into
|
|
3620
|
-
# `alternateBases`. If a variant had a `referenceBases`
|
|
3621
|
-
# value of `T` and an `alternateBases`
|
|
3622
|
-
# value of `["A", "C"]`, and the `genotype` was
|
|
3623
|
-
# `[2, 1]`, that would mean the call
|
|
3624
|
-
# represented the heterozygous value `CA` for this variant.
|
|
3625
|
-
# If the `genotype` was instead `[0, 1]`, the
|
|
3626
|
-
# represented value would be `TA`. Ordering of the
|
|
3627
|
-
# genotype values is important if the `phaseset` is present.
|
|
3628
|
-
# If a genotype is not called (that is, a `.` is present in the
|
|
3629
|
-
# GT string) -1 is returned.
|
|
3630
|
-
# Corresponds to the JSON property `genotype`
|
|
3631
|
-
# @return [Array<Fixnum>]
|
|
3632
|
-
attr_accessor :genotype
|
|
3633
|
-
|
|
3634
|
-
# The genotype likelihoods for this variant call. Each array entry
|
|
3635
|
-
# represents how likely a specific genotype is for this call. The value
|
|
3636
|
-
# ordering is defined by the GL tag in the VCF spec.
|
|
3637
|
-
# If Phred-scaled genotype likelihood scores (PL) are available and
|
|
3638
|
-
# log10(P) genotype likelihood scores (GL) are not, PL scores are converted
|
|
3639
|
-
# to GL scores. If both are available, PL scores are stored in `info`.
|
|
3640
|
-
# Corresponds to the JSON property `genotypeLikelihood`
|
|
3641
|
-
# @return [Array<Float>]
|
|
3642
|
-
attr_accessor :genotype_likelihood
|
|
3643
|
-
|
|
3644
|
-
# A map of additional variant call information. This must be of the form
|
|
3645
|
-
# map<string, string[]> (string key mapping to a list of string values).
|
|
3646
|
-
# Corresponds to the JSON property `info`
|
|
3647
|
-
# @return [Hash<String,Array<Object>>]
|
|
3648
|
-
attr_accessor :info
|
|
3649
|
-
|
|
3650
|
-
# If this field is present, this variant call's genotype ordering implies
|
|
3651
|
-
# the phase of the bases and is consistent with any other variant calls in
|
|
3652
|
-
# the same reference sequence which have the same phaseset value.
|
|
3653
|
-
# When importing data from VCF, if the genotype data was phased but no
|
|
3654
|
-
# phase set was specified this field will be set to `*`.
|
|
3655
|
-
# Corresponds to the JSON property `phaseset`
|
|
3656
|
-
# @return [String]
|
|
3657
|
-
attr_accessor :phaseset
|
|
3658
|
-
|
|
3659
|
-
def initialize(**args)
|
|
3660
|
-
update!(**args)
|
|
3661
|
-
end
|
|
3662
|
-
|
|
3663
|
-
# Update properties of this object
|
|
3664
|
-
def update!(**args)
|
|
3665
|
-
@call_set_id = args[:call_set_id] if args.key?(:call_set_id)
|
|
3666
|
-
@call_set_name = args[:call_set_name] if args.key?(:call_set_name)
|
|
3667
|
-
@genotype = args[:genotype] if args.key?(:genotype)
|
|
3668
|
-
@genotype_likelihood = args[:genotype_likelihood] if args.key?(:genotype_likelihood)
|
|
3669
|
-
@info = args[:info] if args.key?(:info)
|
|
3670
|
-
@phaseset = args[:phaseset] if args.key?(:phaseset)
|
|
3671
|
-
end
|
|
3672
|
-
end
|
|
3673
|
-
|
|
3674
|
-
# A variant set is a collection of call sets and variants. It contains summary
|
|
3675
|
-
# statistics of those contents. A variant set belongs to a dataset.
|
|
3676
|
-
class VariantSet
|
|
3677
|
-
include Google::Apis::Core::Hashable
|
|
3678
|
-
|
|
3679
|
-
# The dataset to which this variant set belongs.
|
|
3680
|
-
# Corresponds to the JSON property `datasetId`
|
|
3681
|
-
# @return [String]
|
|
3682
|
-
attr_accessor :dataset_id
|
|
3683
|
-
|
|
3684
|
-
# A textual description of this variant set.
|
|
3685
|
-
# Corresponds to the JSON property `description`
|
|
3686
|
-
# @return [String]
|
|
3687
|
-
attr_accessor :description
|
|
3688
|
-
|
|
3689
|
-
# The server-generated variant set ID, unique across all variant sets.
|
|
3690
|
-
# Corresponds to the JSON property `id`
|
|
3691
|
-
# @return [String]
|
|
3692
|
-
attr_accessor :id
|
|
3693
|
-
|
|
3694
|
-
# The metadata associated with this variant set.
|
|
3695
|
-
# Corresponds to the JSON property `metadata`
|
|
3696
|
-
# @return [Array<Google::Apis::GenomicsV1::VariantSetMetadata>]
|
|
3697
|
-
attr_accessor :metadata
|
|
3698
|
-
|
|
3699
|
-
# User-specified, mutable name.
|
|
3700
|
-
# Corresponds to the JSON property `name`
|
|
3701
|
-
# @return [String]
|
|
3702
|
-
attr_accessor :name
|
|
3703
|
-
|
|
3704
|
-
# A list of all references used by the variants in a variant set
|
|
3705
|
-
# with associated coordinate upper bounds for each one.
|
|
3706
|
-
# Corresponds to the JSON property `referenceBounds`
|
|
3707
|
-
# @return [Array<Google::Apis::GenomicsV1::ReferenceBound>]
|
|
3708
|
-
attr_accessor :reference_bounds
|
|
3709
|
-
|
|
3710
|
-
# The reference set to which the variant set is mapped. The reference set
|
|
3711
|
-
# describes the alignment provenance of the variant set, while the
|
|
3712
|
-
# `referenceBounds` describe the shape of the actual variant data. The
|
|
3713
|
-
# reference set's reference names are a superset of those found in the
|
|
3714
|
-
# `referenceBounds`.
|
|
3715
|
-
# For example, given a variant set that is mapped to the GRCh38 reference set
|
|
3716
|
-
# and contains a single variant on reference 'X', `referenceBounds` would
|
|
3717
|
-
# contain only an entry for 'X', while the associated reference set
|
|
3718
|
-
# enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
|
|
3719
|
-
# Corresponds to the JSON property `referenceSetId`
|
|
3720
|
-
# @return [String]
|
|
3721
|
-
attr_accessor :reference_set_id
|
|
3722
|
-
|
|
3723
|
-
def initialize(**args)
|
|
3724
|
-
update!(**args)
|
|
3725
|
-
end
|
|
3726
|
-
|
|
3727
|
-
# Update properties of this object
|
|
3728
|
-
def update!(**args)
|
|
3729
|
-
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
|
3730
|
-
@description = args[:description] if args.key?(:description)
|
|
3731
|
-
@id = args[:id] if args.key?(:id)
|
|
3732
|
-
@metadata = args[:metadata] if args.key?(:metadata)
|
|
3733
|
-
@name = args[:name] if args.key?(:name)
|
|
3734
|
-
@reference_bounds = args[:reference_bounds] if args.key?(:reference_bounds)
|
|
3735
|
-
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
|
3736
|
-
end
|
|
3737
|
-
end
|
|
3738
|
-
|
|
3739
|
-
# Metadata describes a single piece of variant call metadata.
|
|
3740
|
-
# These data include a top level key and either a single value string (value)
|
|
3741
|
-
# or a list of key-value pairs (info.)
|
|
3742
|
-
# Value and info are mutually exclusive.
|
|
3743
|
-
class VariantSetMetadata
|
|
3744
|
-
include Google::Apis::Core::Hashable
|
|
3745
|
-
|
|
3746
|
-
# A textual description of this metadata.
|
|
3747
|
-
# Corresponds to the JSON property `description`
|
|
3748
|
-
# @return [String]
|
|
3749
|
-
attr_accessor :description
|
|
3750
|
-
|
|
3751
|
-
# User-provided ID field, not enforced by this API.
|
|
3752
|
-
# Two or more pieces of structured metadata with identical
|
|
3753
|
-
# id and key fields are considered equivalent.
|
|
3754
|
-
# Corresponds to the JSON property `id`
|
|
3755
|
-
# @return [String]
|
|
3756
|
-
attr_accessor :id
|
|
3757
|
-
|
|
3758
|
-
# Remaining structured metadata key-value pairs. This must be of the form
|
|
3759
|
-
# map<string, string[]> (string key mapping to a list of string values).
|
|
3760
|
-
# Corresponds to the JSON property `info`
|
|
3761
|
-
# @return [Hash<String,Array<Object>>]
|
|
3762
|
-
attr_accessor :info
|
|
3763
|
-
|
|
3764
|
-
# The top-level key.
|
|
3765
|
-
# Corresponds to the JSON property `key`
|
|
3766
|
-
# @return [String]
|
|
3767
|
-
attr_accessor :key
|
|
3768
|
-
|
|
3769
|
-
# The number of values that can be included in a field described by this
|
|
3770
|
-
# metadata.
|
|
3771
|
-
# Corresponds to the JSON property `number`
|
|
3772
|
-
# @return [String]
|
|
3773
|
-
attr_accessor :number
|
|
3774
|
-
|
|
3775
|
-
# The type of data. Possible types include: Integer, Float,
|
|
3776
|
-
# Flag, Character, and String.
|
|
3777
|
-
# Corresponds to the JSON property `type`
|
|
3778
|
-
# @return [String]
|
|
3779
|
-
attr_accessor :type
|
|
3780
|
-
|
|
3781
|
-
# The value field for simple metadata
|
|
3782
|
-
# Corresponds to the JSON property `value`
|
|
3783
|
-
# @return [String]
|
|
3784
|
-
attr_accessor :value
|
|
3785
|
-
|
|
3786
|
-
def initialize(**args)
|
|
3787
|
-
update!(**args)
|
|
3788
|
-
end
|
|
3789
|
-
|
|
3790
|
-
# Update properties of this object
|
|
3791
|
-
def update!(**args)
|
|
3792
|
-
@description = args[:description] if args.key?(:description)
|
|
3793
|
-
@id = args[:id] if args.key?(:id)
|
|
3794
|
-
@info = args[:info] if args.key?(:info)
|
|
3795
|
-
@key = args[:key] if args.key?(:key)
|
|
3796
|
-
@number = args[:number] if args.key?(:number)
|
|
3797
|
-
@type = args[:type] if args.key?(:type)
|
|
3798
|
-
@value = args[:value] if args.key?(:value)
|
|
3799
|
-
end
|
|
3800
|
-
end
|
|
3801
|
-
|
|
3802
671
|
# An event generated after a worker VM has been assigned to run the
|
|
3803
672
|
# pipeline.
|
|
3804
673
|
class WorkerAssignedEvent
|