google-api-client 0.11.3 → 0.12.0

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Files changed (397) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +51 -0
  3. data/api_names.yaml +32317 -34465
  4. data/generated/google/apis/acceleratedmobilepageurl_v1/classes.rb +44 -44
  5. data/generated/google/apis/acceleratedmobilepageurl_v1/representations.rb +14 -14
  6. data/generated/google/apis/acceleratedmobilepageurl_v1/service.rb +10 -10
  7. data/generated/google/apis/adexchangebuyer2_v2beta1.rb +1 -1
  8. data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +305 -305
  9. data/generated/google/apis/adexchangebuyer2_v2beta1/representations.rb +82 -82
  10. data/generated/google/apis/adexchangebuyer2_v2beta1/service.rb +106 -106
  11. data/generated/google/apis/adexchangebuyer_v1_4/classes.rb +6 -6
  12. data/generated/google/apis/adexchangebuyer_v1_4/representations.rb +3 -3
  13. data/generated/google/apis/adexchangebuyer_v1_4/service.rb +3 -3
  14. data/generated/google/apis/adexchangeseller_v2_0/service.rb +10 -10
  15. data/generated/google/apis/admin_directory_v1/service.rb +26 -26
  16. data/generated/google/apis/adsense_v1_4.rb +1 -1
  17. data/generated/google/apis/adsense_v1_4/classes.rb +2 -2
  18. data/generated/google/apis/adsense_v1_4/representations.rb +3 -3
  19. data/generated/google/apis/adsense_v1_4/service.rb +44 -44
  20. data/generated/google/apis/adsensehost_v4_1.rb +1 -1
  21. data/generated/google/apis/adsensehost_v4_1/service.rb +22 -22
  22. data/generated/google/apis/analytics_v3/classes.rb +3 -3
  23. data/generated/google/apis/analytics_v3/representations.rb +3 -3
  24. data/generated/google/apis/analytics_v3/service.rb +82 -82
  25. data/generated/google/apis/analyticsreporting_v4.rb +1 -1
  26. data/generated/google/apis/analyticsreporting_v4/classes.rb +916 -916
  27. data/generated/google/apis/analyticsreporting_v4/representations.rb +167 -167
  28. data/generated/google/apis/analyticsreporting_v4/service.rb +7 -7
  29. data/generated/google/apis/androidenterprise_v1.rb +1 -1
  30. data/generated/google/apis/androidenterprise_v1/classes.rb +10 -10
  31. data/generated/google/apis/androidenterprise_v1/representations.rb +20 -20
  32. data/generated/google/apis/androidenterprise_v1/service.rb +43 -43
  33. data/generated/google/apis/androidpublisher_v2/classes.rb +26 -26
  34. data/generated/google/apis/androidpublisher_v2/representations.rb +46 -46
  35. data/generated/google/apis/androidpublisher_v2/service.rb +95 -95
  36. data/generated/google/apis/appengine_v1.rb +1 -1
  37. data/generated/google/apis/appengine_v1/classes.rb +825 -817
  38. data/generated/google/apis/appengine_v1/representations.rb +185 -184
  39. data/generated/google/apis/appengine_v1/service.rb +220 -216
  40. data/generated/google/apis/appstate_v1.rb +1 -1
  41. data/generated/google/apis/bigquery_v2.rb +1 -1
  42. data/generated/google/apis/bigquery_v2/classes.rb +9 -7
  43. data/generated/google/apis/bigquery_v2/representations.rb +8 -8
  44. data/generated/google/apis/bigquery_v2/service.rb +13 -13
  45. data/generated/google/apis/blogger_v3/service.rb +3 -3
  46. data/generated/google/apis/books_v1/classes.rb +55 -55
  47. data/generated/google/apis/books_v1/representations.rb +67 -67
  48. data/generated/google/apis/books_v1/service.rb +82 -82
  49. data/generated/google/apis/calendar_v3.rb +1 -1
  50. data/generated/google/apis/calendar_v3/classes.rb +6 -6
  51. data/generated/google/apis/calendar_v3/representations.rb +3 -3
  52. data/generated/google/apis/calendar_v3/service.rb +2 -2
  53. data/generated/google/apis/civicinfo_v2/classes.rb +1 -1
  54. data/generated/google/apis/civicinfo_v2/representations.rb +2 -2
  55. data/generated/google/apis/civicinfo_v2/service.rb +8 -8
  56. data/generated/google/apis/classroom_v1.rb +24 -24
  57. data/generated/google/apis/classroom_v1/classes.rb +381 -381
  58. data/generated/google/apis/classroom_v1/representations.rb +108 -108
  59. data/generated/google/apis/classroom_v1/service.rb +503 -503
  60. data/generated/google/apis/cloudbuild_v1.rb +1 -1
  61. data/generated/google/apis/cloudbuild_v1/classes.rb +219 -219
  62. data/generated/google/apis/cloudbuild_v1/representations.rb +62 -62
  63. data/generated/google/apis/cloudbuild_v1/service.rb +165 -165
  64. data/generated/google/apis/clouddebugger_v2.rb +1 -1
  65. data/generated/google/apis/clouddebugger_v2/classes.rb +133 -133
  66. data/generated/google/apis/clouddebugger_v2/representations.rb +29 -29
  67. data/generated/google/apis/clouddebugger_v2/service.rb +54 -54
  68. data/generated/google/apis/clouderrorreporting_v1beta1.rb +1 -1
  69. data/generated/google/apis/clouderrorreporting_v1beta1/classes.rb +177 -177
  70. data/generated/google/apis/clouderrorreporting_v1beta1/representations.rb +47 -47
  71. data/generated/google/apis/clouderrorreporting_v1beta1/service.rb +123 -123
  72. data/generated/google/apis/cloudfunctions_v1.rb +1 -1
  73. data/generated/google/apis/cloudfunctions_v1/service.rb +6 -6
  74. data/generated/google/apis/cloudkms_v1.rb +3 -3
  75. data/generated/google/apis/cloudkms_v1/classes.rb +229 -229
  76. data/generated/google/apis/cloudkms_v1/representations.rb +54 -54
  77. data/generated/google/apis/cloudkms_v1/service.rb +224 -224
  78. data/generated/google/apis/cloudresourcemanager_v1.rb +3 -3
  79. data/generated/google/apis/cloudresourcemanager_v1/classes.rb +1199 -1199
  80. data/generated/google/apis/cloudresourcemanager_v1/representations.rb +192 -192
  81. data/generated/google/apis/cloudresourcemanager_v1/service.rb +122 -122
  82. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +495 -495
  83. data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +92 -92
  84. data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +320 -320
  85. data/generated/google/apis/cloudtrace_v1.rb +4 -4
  86. data/generated/google/apis/cloudtrace_v1/classes.rb +44 -44
  87. data/generated/google/apis/cloudtrace_v1/representations.rb +13 -13
  88. data/generated/google/apis/cloudtrace_v1/service.rb +28 -28
  89. data/generated/google/apis/compute_beta.rb +1 -1
  90. data/generated/google/apis/compute_beta/classes.rb +57 -15
  91. data/generated/google/apis/compute_beta/representations.rb +30 -14
  92. data/generated/google/apis/compute_beta/service.rb +52 -52
  93. data/generated/google/apis/compute_v1.rb +1 -1
  94. data/generated/google/apis/compute_v1/classes.rb +223 -10
  95. data/generated/google/apis/compute_v1/representations.rb +85 -16
  96. data/generated/google/apis/compute_v1/service.rb +327 -51
  97. data/generated/google/apis/container_v1/classes.rb +267 -267
  98. data/generated/google/apis/container_v1/representations.rb +61 -61
  99. data/generated/google/apis/container_v1/service.rb +123 -123
  100. data/generated/google/apis/content_v2.rb +1 -1
  101. data/generated/google/apis/content_v2/classes.rb +71 -71
  102. data/generated/google/apis/content_v2/representations.rb +105 -105
  103. data/generated/google/apis/content_v2/service.rb +120 -120
  104. data/generated/google/apis/dataflow_v1b3.rb +4 -4
  105. data/generated/google/apis/dataflow_v1b3/classes.rb +3442 -3452
  106. data/generated/google/apis/dataflow_v1b3/representations.rb +388 -389
  107. data/generated/google/apis/dataflow_v1b3/service.rb +265 -265
  108. data/generated/google/apis/dataproc_v1.rb +1 -1
  109. data/generated/google/apis/dataproc_v1/classes.rb +1059 -1059
  110. data/generated/google/apis/dataproc_v1/representations.rb +147 -147
  111. data/generated/google/apis/dataproc_v1/service.rb +309 -305
  112. data/generated/google/apis/datastore_v1.rb +1 -1
  113. data/generated/google/apis/datastore_v1/classes.rb +818 -818
  114. data/generated/google/apis/datastore_v1/representations.rb +151 -151
  115. data/generated/google/apis/datastore_v1/service.rb +62 -62
  116. data/generated/google/apis/deploymentmanager_v2/classes.rb +5 -5
  117. data/generated/google/apis/deploymentmanager_v2/representations.rb +10 -10
  118. data/generated/google/apis/deploymentmanager_v2/service.rb +20 -20
  119. data/generated/google/apis/discovery_v1/classes.rb +4 -4
  120. data/generated/google/apis/discovery_v1/representations.rb +2 -2
  121. data/generated/google/apis/discovery_v1/service.rb +1 -1
  122. data/generated/google/apis/dns_v1.rb +1 -1
  123. data/generated/google/apis/dns_v1/classes.rb +3 -3
  124. data/generated/google/apis/dns_v1/representations.rb +6 -6
  125. data/generated/google/apis/dns_v1/service.rb +12 -12
  126. data/generated/google/apis/dns_v2beta1.rb +1 -1
  127. data/generated/google/apis/doubleclickbidmanager_v1.rb +1 -1
  128. data/generated/google/apis/doubleclickbidmanager_v1/service.rb +8 -8
  129. data/generated/google/apis/doubleclicksearch_v2.rb +1 -1
  130. data/generated/google/apis/drive_v2/service.rb +1 -1
  131. data/generated/google/apis/drive_v3/service.rb +1 -1
  132. data/generated/google/apis/firebasedynamiclinks_v1.rb +1 -1
  133. data/generated/google/apis/firebasedynamiclinks_v1/classes.rb +188 -188
  134. data/generated/google/apis/firebasedynamiclinks_v1/representations.rb +62 -62
  135. data/generated/google/apis/firebasedynamiclinks_v1/service.rb +4 -4
  136. data/generated/google/apis/firebaserules_v1.rb +1 -1
  137. data/generated/google/apis/firebaserules_v1/classes.rb +403 -206
  138. data/generated/google/apis/firebaserules_v1/representations.rb +134 -54
  139. data/generated/google/apis/firebaserules_v1/service.rb +89 -89
  140. data/generated/google/apis/fusiontables_v2/service.rb +2 -2
  141. data/generated/google/apis/games_configuration_v1configuration.rb +1 -1
  142. data/generated/google/apis/games_configuration_v1configuration/classes.rb +2 -2
  143. data/generated/google/apis/games_configuration_v1configuration/representations.rb +4 -4
  144. data/generated/google/apis/games_configuration_v1configuration/service.rb +8 -8
  145. data/generated/google/apis/games_management_v1management.rb +1 -1
  146. data/generated/google/apis/games_v1.rb +1 -1
  147. data/generated/google/apis/games_v1/classes.rb +23 -23
  148. data/generated/google/apis/games_v1/representations.rb +43 -43
  149. data/generated/google/apis/games_v1/service.rb +72 -72
  150. data/generated/google/apis/genomics_v1.rb +7 -7
  151. data/generated/google/apis/genomics_v1/classes.rb +2296 -2297
  152. data/generated/google/apis/genomics_v1/representations.rb +298 -298
  153. data/generated/google/apis/genomics_v1/service.rb +1160 -1160
  154. data/generated/google/apis/groupssettings_v1/service.rb +0 -3
  155. data/generated/google/apis/iam_v1.rb +1 -1
  156. data/generated/google/apis/iam_v1/classes.rb +235 -235
  157. data/generated/google/apis/iam_v1/representations.rb +72 -72
  158. data/generated/google/apis/iam_v1/service.rb +189 -189
  159. data/generated/google/apis/identitytoolkit_v3/classes.rb +15 -15
  160. data/generated/google/apis/identitytoolkit_v3/representations.rb +30 -30
  161. data/generated/google/apis/identitytoolkit_v3/service.rb +64 -64
  162. data/generated/google/apis/kgsearch_v1/classes.rb +6 -6
  163. data/generated/google/apis/kgsearch_v1/representations.rb +1 -1
  164. data/generated/google/apis/kgsearch_v1/service.rb +10 -10
  165. data/generated/google/apis/language_v1/classes.rb +220 -220
  166. data/generated/google/apis/language_v1/representations.rb +81 -81
  167. data/generated/google/apis/language_v1/service.rb +43 -43
  168. data/generated/google/apis/language_v1beta1/classes.rb +448 -448
  169. data/generated/google/apis/language_v1beta1/representations.rb +106 -106
  170. data/generated/google/apis/language_v1beta1/service.rb +31 -31
  171. data/generated/google/apis/licensing_v1/service.rb +2 -2
  172. data/generated/google/apis/logging_v2/classes.rb +737 -737
  173. data/generated/google/apis/logging_v2/representations.rb +120 -120
  174. data/generated/google/apis/logging_v2/service.rb +479 -479
  175. data/generated/google/apis/logging_v2beta1/classes.rb +293 -293
  176. data/generated/google/apis/logging_v2beta1/representations.rb +54 -54
  177. data/generated/google/apis/logging_v2beta1/service.rb +349 -349
  178. data/generated/google/apis/manufacturers_v1/classes.rb +423 -423
  179. data/generated/google/apis/manufacturers_v1/representations.rb +61 -61
  180. data/generated/google/apis/manufacturers_v1/service.rb +8 -8
  181. data/generated/google/apis/mirror_v1/classes.rb +5 -5
  182. data/generated/google/apis/mirror_v1/representations.rb +10 -10
  183. data/generated/google/apis/mirror_v1/service.rb +20 -20
  184. data/generated/google/apis/ml_v1.rb +1 -1
  185. data/generated/google/apis/ml_v1/classes.rb +1285 -1205
  186. data/generated/google/apis/ml_v1/representations.rb +204 -174
  187. data/generated/google/apis/ml_v1/service.rb +150 -145
  188. data/generated/google/apis/monitoring_v3.rb +1 -1
  189. data/generated/google/apis/monitoring_v3/classes.rb +880 -880
  190. data/generated/google/apis/monitoring_v3/representations.rb +154 -154
  191. data/generated/google/apis/monitoring_v3/service.rb +299 -299
  192. data/generated/google/apis/mybusiness_v3/service.rb +5 -5
  193. data/generated/google/apis/oauth2_v2/service.rb +1 -1
  194. data/generated/google/apis/pagespeedonline_v2/classes.rb +11 -11
  195. data/generated/google/apis/pagespeedonline_v2/representations.rb +13 -13
  196. data/generated/google/apis/pagespeedonline_v2/service.rb +1 -1
  197. data/generated/google/apis/partners_v2.rb +1 -1
  198. data/generated/google/apis/partners_v2/classes.rb +524 -509
  199. data/generated/google/apis/partners_v2/representations.rb +115 -111
  200. data/generated/google/apis/partners_v2/service.rb +287 -287
  201. data/generated/google/apis/people_v1.rb +13 -13
  202. data/generated/google/apis/people_v1/classes.rb +1150 -1150
  203. data/generated/google/apis/people_v1/representations.rb +258 -258
  204. data/generated/google/apis/people_v1/service.rb +7 -7
  205. data/generated/google/apis/plus_domains_v1.rb +1 -1
  206. data/generated/google/apis/plus_domains_v1/service.rb +4 -4
  207. data/generated/google/apis/plus_v1.rb +1 -1
  208. data/generated/google/apis/plus_v1/service.rb +1 -1
  209. data/generated/google/apis/prediction_v1_6/service.rb +8 -8
  210. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +554 -554
  211. data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +108 -108
  212. data/generated/google/apis/proximitybeacon_v1beta1/service.rb +224 -224
  213. data/generated/google/apis/pubsub_v1/classes.rb +228 -228
  214. data/generated/google/apis/pubsub_v1/representations.rb +69 -69
  215. data/generated/google/apis/pubsub_v1/service.rb +182 -182
  216. data/generated/google/apis/qpx_express_v1/classes.rb +2 -2
  217. data/generated/google/apis/qpx_express_v1/representations.rb +4 -4
  218. data/generated/google/apis/qpx_express_v1/service.rb +8 -8
  219. data/generated/google/apis/replicapool_v1beta2/classes.rb +5 -5
  220. data/generated/google/apis/replicapool_v1beta2/representations.rb +10 -10
  221. data/generated/google/apis/replicapool_v1beta2/service.rb +21 -21
  222. data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +1 -1
  223. data/generated/google/apis/resourceviews_v1beta2/classes.rb +5 -5
  224. data/generated/google/apis/resourceviews_v1beta2/representations.rb +10 -10
  225. data/generated/google/apis/resourceviews_v1beta2/service.rb +20 -20
  226. data/generated/google/apis/runtimeconfig_v1.rb +3 -3
  227. data/generated/google/apis/runtimeconfig_v1/classes.rb +19 -19
  228. data/generated/google/apis/runtimeconfig_v1/representations.rb +10 -10
  229. data/generated/google/apis/runtimeconfig_v1/service.rb +4 -4
  230. data/generated/google/apis/script_v1.rb +9 -9
  231. data/generated/google/apis/script_v1/classes.rb +94 -94
  232. data/generated/google/apis/script_v1/representations.rb +26 -26
  233. data/generated/google/apis/searchconsole_v1.rb +1 -1
  234. data/generated/google/apis/searchconsole_v1/classes.rb +65 -65
  235. data/generated/google/apis/searchconsole_v1/representations.rb +27 -27
  236. data/generated/google/apis/searchconsole_v1/service.rb +6 -6
  237. data/generated/google/apis/servicecontrol_v1/classes.rb +1131 -1131
  238. data/generated/google/apis/servicecontrol_v1/representations.rb +195 -195
  239. data/generated/google/apis/servicecontrol_v1/service.rb +57 -57
  240. data/generated/google/apis/servicemanagement_v1.rb +7 -7
  241. data/generated/google/apis/servicemanagement_v1/classes.rb +3543 -3585
  242. data/generated/google/apis/servicemanagement_v1/representations.rb +556 -556
  243. data/generated/google/apis/servicemanagement_v1/service.rb +309 -309
  244. data/generated/google/apis/serviceuser_v1.rb +4 -4
  245. data/generated/google/apis/serviceuser_v1/classes.rb +2734 -2776
  246. data/generated/google/apis/serviceuser_v1/representations.rb +398 -398
  247. data/generated/google/apis/serviceuser_v1/service.rb +16 -16
  248. data/generated/google/apis/sheets_v4/classes.rb +1489 -1489
  249. data/generated/google/apis/sheets_v4/representations.rb +324 -324
  250. data/generated/google/apis/sheets_v4/service.rb +49 -49
  251. data/generated/google/apis/site_verification_v1/classes.rb +6 -6
  252. data/generated/google/apis/site_verification_v1/representations.rb +8 -8
  253. data/generated/google/apis/site_verification_v1/service.rb +12 -12
  254. data/generated/google/apis/slides_v1.rb +4 -4
  255. data/generated/google/apis/slides_v1/classes.rb +2907 -2907
  256. data/generated/google/apis/slides_v1/representations.rb +695 -695
  257. data/generated/google/apis/slides_v1/service.rb +40 -40
  258. data/generated/google/apis/sourcerepo_v1.rb +7 -1
  259. data/generated/google/apis/sourcerepo_v1/classes.rb +459 -452
  260. data/generated/google/apis/sourcerepo_v1/representations.rb +90 -89
  261. data/generated/google/apis/sourcerepo_v1/service.rb +101 -100
  262. data/generated/google/apis/spanner_v1/classes.rb +2557 -2557
  263. data/generated/google/apis/spanner_v1/representations.rb +205 -205
  264. data/generated/google/apis/spanner_v1/service.rb +525 -525
  265. data/generated/google/apis/speech_v1beta1.rb +1 -1
  266. data/generated/google/apis/speech_v1beta1/classes.rb +73 -73
  267. data/generated/google/apis/speech_v1beta1/representations.rb +25 -25
  268. data/generated/google/apis/speech_v1beta1/service.rb +33 -33
  269. data/generated/google/apis/sqladmin_v1beta4.rb +1 -1
  270. data/generated/google/apis/sqladmin_v1beta4/classes.rb +16 -15
  271. data/generated/google/apis/sqladmin_v1beta4/representations.rb +28 -28
  272. data/generated/google/apis/sqladmin_v1beta4/service.rb +58 -57
  273. data/generated/google/apis/storage_v1/classes.rb +6 -6
  274. data/generated/google/apis/storage_v1/representations.rb +4 -4
  275. data/generated/google/apis/storage_v1/service.rb +1 -1
  276. data/generated/google/apis/storagetransfer_v1.rb +1 -1
  277. data/generated/google/apis/storagetransfer_v1/classes.rb +357 -357
  278. data/generated/google/apis/storagetransfer_v1/representations.rb +87 -87
  279. data/generated/google/apis/storagetransfer_v1/service.rb +53 -48
  280. data/generated/google/apis/tagmanager_v1/service.rb +33 -33
  281. data/generated/google/apis/toolresults_v1beta3.rb +1 -1
  282. data/generated/google/apis/translate_v2.rb +1 -1
  283. data/generated/google/apis/translate_v2/classes.rb +46 -46
  284. data/generated/google/apis/translate_v2/representations.rb +22 -22
  285. data/generated/google/apis/translate_v2/service.rb +81 -74
  286. data/generated/google/apis/vision_v1/classes.rb +1290 -1290
  287. data/generated/google/apis/vision_v1/representations.rb +166 -166
  288. data/generated/google/apis/vision_v1/service.rb +6 -6
  289. data/generated/google/apis/webmasters_v3/classes.rb +4 -4
  290. data/generated/google/apis/webmasters_v3/representations.rb +8 -8
  291. data/generated/google/apis/webmasters_v3/service.rb +21 -21
  292. data/generated/google/apis/youtube_analytics_v1.rb +1 -1
  293. data/generated/google/apis/youtube_analytics_v1/classes.rb +2 -2
  294. data/generated/google/apis/youtube_analytics_v1/representations.rb +4 -4
  295. data/generated/google/apis/youtube_analytics_v1/service.rb +8 -8
  296. data/generated/google/apis/youtube_v3/classes.rb +20 -20
  297. data/generated/google/apis/youtube_v3/representations.rb +40 -40
  298. data/generated/google/apis/youtube_v3/service.rb +80 -80
  299. data/generated/google/apis/youtubereporting_v1.rb +1 -1
  300. data/generated/google/apis/youtubereporting_v1/classes.rb +127 -127
  301. data/generated/google/apis/youtubereporting_v1/representations.rb +36 -36
  302. data/generated/google/apis/youtubereporting_v1/service.rb +90 -90
  303. data/google-api-client.gemspec +3 -3
  304. data/lib/google/apis/core/base_service.rb +6 -0
  305. data/lib/google/apis/generator/annotator.rb +2 -2
  306. data/lib/google/apis/generator/model.rb +2 -2
  307. data/lib/google/apis/version.rb +1 -1
  308. metadata +11 -94
  309. data/dl.rb +0 -0
  310. data/generated/google/apis/adexchangebuyer_v1_3.rb +0 -35
  311. data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +0 -1335
  312. data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +0 -446
  313. data/generated/google/apis/adexchangebuyer_v1_3/service.rb +0 -872
  314. data/generated/google/apis/appengine_v1beta4.rb +0 -35
  315. data/generated/google/apis/appengine_v1beta4/classes.rb +0 -1585
  316. data/generated/google/apis/appengine_v1beta4/representations.rb +0 -542
  317. data/generated/google/apis/appengine_v1beta4/service.rb +0 -477
  318. data/generated/google/apis/appengine_v1beta5.rb +0 -40
  319. data/generated/google/apis/appengine_v1beta5/classes.rb +0 -2094
  320. data/generated/google/apis/appengine_v1beta5/representations.rb +0 -802
  321. data/generated/google/apis/appengine_v1beta5/service.rb +0 -867
  322. data/generated/google/apis/autoscaler_v1beta2.rb +0 -38
  323. data/generated/google/apis/autoscaler_v1beta2/classes.rb +0 -710
  324. data/generated/google/apis/autoscaler_v1beta2/representations.rb +0 -296
  325. data/generated/google/apis/autoscaler_v1beta2/service.rb +0 -478
  326. data/generated/google/apis/classroom_v1beta1.rb +0 -49
  327. data/generated/google/apis/classroom_v1beta1/classes.rb +0 -447
  328. data/generated/google/apis/classroom_v1beta1/representations.rb +0 -190
  329. data/generated/google/apis/classroom_v1beta1/service.rb +0 -791
  330. data/generated/google/apis/cloudkms_v1beta1.rb +0 -35
  331. data/generated/google/apis/cloudkms_v1beta1/classes.rb +0 -1039
  332. data/generated/google/apis/cloudkms_v1beta1/representations.rb +0 -448
  333. data/generated/google/apis/cloudkms_v1beta1/service.rb +0 -933
  334. data/generated/google/apis/cloudlatencytest_v2.rb +0 -34
  335. data/generated/google/apis/cloudlatencytest_v2/classes.rb +0 -195
  336. data/generated/google/apis/cloudlatencytest_v2/representations.rb +0 -127
  337. data/generated/google/apis/cloudlatencytest_v2/service.rb +0 -135
  338. data/generated/google/apis/container_v1beta1.rb +0 -35
  339. data/generated/google/apis/container_v1beta1/classes.rb +0 -466
  340. data/generated/google/apis/container_v1beta1/representations.rb +0 -177
  341. data/generated/google/apis/container_v1beta1/service.rb +0 -394
  342. data/generated/google/apis/coordinate_v1.rb +0 -37
  343. data/generated/google/apis/coordinate_v1/classes.rb +0 -669
  344. data/generated/google/apis/coordinate_v1/representations.rb +0 -321
  345. data/generated/google/apis/coordinate_v1/service.rb +0 -678
  346. data/generated/google/apis/datastore_v1beta2.rb +0 -40
  347. data/generated/google/apis/datastore_v1beta2/classes.rb +0 -1186
  348. data/generated/google/apis/datastore_v1beta2/representations.rb +0 -594
  349. data/generated/google/apis/datastore_v1beta2/service.rb +0 -294
  350. data/generated/google/apis/datastore_v1beta3.rb +0 -38
  351. data/generated/google/apis/datastore_v1beta3/classes.rb +0 -1284
  352. data/generated/google/apis/datastore_v1beta3/representations.rb +0 -572
  353. data/generated/google/apis/datastore_v1beta3/service.rb +0 -259
  354. data/generated/google/apis/deploymentmanager_v2beta2.rb +0 -44
  355. data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +0 -843
  356. data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +0 -306
  357. data/generated/google/apis/deploymentmanager_v2beta2/service.rb +0 -689
  358. data/generated/google/apis/dfareporting_v2_1.rb +0 -37
  359. data/generated/google/apis/dfareporting_v2_1/classes.rb +0 -10770
  360. data/generated/google/apis/dfareporting_v2_1/representations.rb +0 -3438
  361. data/generated/google/apis/dfareporting_v2_1/service.rb +0 -8585
  362. data/generated/google/apis/dfareporting_v2_3.rb +0 -37
  363. data/generated/google/apis/dfareporting_v2_3/classes.rb +0 -10839
  364. data/generated/google/apis/dfareporting_v2_3/representations.rb +0 -3829
  365. data/generated/google/apis/dfareporting_v2_3/service.rb +0 -8581
  366. data/generated/google/apis/dfareporting_v2_5.rb +0 -40
  367. data/generated/google/apis/dfareporting_v2_5/classes.rb +0 -11225
  368. data/generated/google/apis/dfareporting_v2_5/representations.rb +0 -3982
  369. data/generated/google/apis/dfareporting_v2_5/service.rb +0 -8755
  370. data/generated/google/apis/dfareporting_v2_6.rb +0 -40
  371. data/generated/google/apis/dfareporting_v2_6/classes.rb +0 -11599
  372. data/generated/google/apis/dfareporting_v2_6/representations.rb +0 -4119
  373. data/generated/google/apis/dfareporting_v2_6/service.rb +0 -9026
  374. data/generated/google/apis/gan_v1beta1.rb +0 -31
  375. data/generated/google/apis/gan_v1beta1/classes.rb +0 -1428
  376. data/generated/google/apis/gan_v1beta1/representations.rb +0 -462
  377. data/generated/google/apis/gan_v1beta1/service.rb +0 -682
  378. data/generated/google/apis/genomics_v1beta2.rb +0 -46
  379. data/generated/google/apis/genomics_v1beta2/classes.rb +0 -3288
  380. data/generated/google/apis/genomics_v1beta2/representations.rb +0 -1194
  381. data/generated/google/apis/genomics_v1beta2/service.rb +0 -2392
  382. data/generated/google/apis/logging_v1beta3.rb +0 -47
  383. data/generated/google/apis/logging_v1beta3/classes.rb +0 -1079
  384. data/generated/google/apis/logging_v1beta3/representations.rb +0 -366
  385. data/generated/google/apis/logging_v1beta3/service.rb +0 -1001
  386. data/generated/google/apis/manager_v1beta2.rb +0 -53
  387. data/generated/google/apis/manager_v1beta2/classes.rb +0 -1287
  388. data/generated/google/apis/manager_v1beta2/representations.rb +0 -606
  389. data/generated/google/apis/manager_v1beta2/service.rb +0 -372
  390. data/generated/google/apis/pubsub_v1beta2.rb +0 -37
  391. data/generated/google/apis/pubsub_v1beta2/classes.rb +0 -620
  392. data/generated/google/apis/pubsub_v1beta2/representations.rb +0 -282
  393. data/generated/google/apis/pubsub_v1beta2/service.rb +0 -774
  394. data/generated/google/apis/tracing_v1.rb +0 -40
  395. data/generated/google/apis/tracing_v1/classes.rb +0 -664
  396. data/generated/google/apis/tracing_v1/representations.rb +0 -279
  397. data/generated/google/apis/tracing_v1/service.rb +0 -226
@@ -1,2392 +0,0 @@
1
- # Copyright 2015 Google Inc.
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- #
3
- # Licensed under the Apache License, Version 2.0 (the "License");
4
- # you may not use this file except in compliance with the License.
5
- # You may obtain a copy of the License at
6
- #
7
- # http://www.apache.org/licenses/LICENSE-2.0
8
- #
9
- # Unless required by applicable law or agreed to in writing, software
10
- # distributed under the License is distributed on an "AS IS" BASIS,
11
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
- # See the License for the specific language governing permissions and
13
- # limitations under the License.
14
-
15
- require 'google/apis/core/base_service'
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- require 'google/apis/core/json_representation'
17
- require 'google/apis/core/hashable'
18
- require 'google/apis/errors'
19
-
20
- module Google
21
- module Apis
22
- module GenomicsV1beta2
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- # Genomics API
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- #
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- # Provides access to Genomics data.
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- #
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- # @example
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- # require 'google/apis/genomics_v1beta2'
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- #
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- # Genomics = Google::Apis::GenomicsV1beta2 # Alias the module
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- # service = Genomics::GenomicsService.new
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- #
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- # @see https://developers.google.com/genomics/v1beta2/reference
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- class GenomicsService < Google::Apis::Core::BaseService
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- # @return [String]
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- # API key. Your API key identifies your project and provides you with API access,
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- # quota, and reports. Required unless you provide an OAuth 2.0 token.
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- attr_accessor :key
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-
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- # @return [String]
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- # Available to use for quota purposes for server-side applications. Can be any
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- # arbitrary string assigned to a user, but should not exceed 40 characters.
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- # Overrides userIp if both are provided.
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- attr_accessor :quota_user
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-
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- # @return [String]
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- # IP address of the site where the request originates. Use this if you want to
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- # enforce per-user limits.
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- attr_accessor :user_ip
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-
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- def initialize
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- super('https://www.googleapis.com/', 'genomics/v1beta2/')
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- end
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-
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- # Creates a new annotation set. Caller must have WRITE permission for the
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- # associated dataset.
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- # @param [Google::Apis::GenomicsV1beta2::AnnotationSet] annotation_set_object
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- # @param [String] fields
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- # Selector specifying which fields to include in a partial response.
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- # @param [String] quota_user
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- # Available to use for quota purposes for server-side applications. Can be any
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- # arbitrary string assigned to a user, but should not exceed 40 characters.
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- # Overrides userIp if both are provided.
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- # @param [String] user_ip
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- # IP address of the site where the request originates. Use this if you want to
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- # enforce per-user limits.
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- # @param [Google::Apis::RequestOptions] options
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- # Request-specific options
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- #
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- # @yield [result, err] Result & error if block supplied
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- # @yieldparam result [Google::Apis::GenomicsV1beta2::AnnotationSet] parsed result object
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- # @yieldparam err [StandardError] error object if request failed
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- #
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- # @return [Google::Apis::GenomicsV1beta2::AnnotationSet]
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- #
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- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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- # @raise [Google::Apis::AuthorizationError] Authorization is required
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- def create_annotation_set(annotation_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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- path = 'annotationSets'
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- command = make_simple_command(:post, path, options)
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- command.request_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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- command.request_object = annotation_set_object
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- command.response_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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- command.response_class = Google::Apis::GenomicsV1beta2::AnnotationSet
86
- command.query['fields'] = fields unless fields.nil?
87
- command.query['quotaUser'] = quota_user unless quota_user.nil?
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- command.query['userIp'] = user_ip unless user_ip.nil?
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- execute_or_queue_command(command, &block)
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- end
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-
92
- # Deletes an annotation set. Caller must have WRITE permission for the
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- # associated annotation set.
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- # @param [String] annotation_set_id
95
- # The ID of the annotation set to be deleted.
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- # @param [String] fields
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- # Selector specifying which fields to include in a partial response.
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- # @param [String] quota_user
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- # Available to use for quota purposes for server-side applications. Can be any
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- # arbitrary string assigned to a user, but should not exceed 40 characters.
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- # Overrides userIp if both are provided.
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- # @param [String] user_ip
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- # IP address of the site where the request originates. Use this if you want to
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- # enforce per-user limits.
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- # @param [Google::Apis::RequestOptions] options
106
- # Request-specific options
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- #
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- # @yield [result, err] Result & error if block supplied
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- # @yieldparam result [NilClass] No result returned for this method
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- # @yieldparam err [StandardError] error object if request failed
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- #
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- # @return [void]
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- #
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- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
116
- # @raise [Google::Apis::AuthorizationError] Authorization is required
117
- def delete_annotation_set(annotation_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
118
- path = 'annotationSets/{annotationSetId}'
119
- command = make_simple_command(:delete, path, options)
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- command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
121
- command.query['fields'] = fields unless fields.nil?
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- command.query['quotaUser'] = quota_user unless quota_user.nil?
123
- command.query['userIp'] = user_ip unless user_ip.nil?
124
- execute_or_queue_command(command, &block)
125
- end
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-
127
- # Gets an annotation set. Caller must have READ permission for the associated
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- # dataset.
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- # @param [String] annotation_set_id
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- # The ID of the annotation set to be retrieved.
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- # @param [String] fields
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- # Selector specifying which fields to include in a partial response.
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- # @param [String] quota_user
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- # Available to use for quota purposes for server-side applications. Can be any
135
- # arbitrary string assigned to a user, but should not exceed 40 characters.
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- # Overrides userIp if both are provided.
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- # @param [String] user_ip
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- # IP address of the site where the request originates. Use this if you want to
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- # enforce per-user limits.
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- # @param [Google::Apis::RequestOptions] options
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- # Request-specific options
142
- #
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- # @yield [result, err] Result & error if block supplied
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- # @yieldparam result [Google::Apis::GenomicsV1beta2::AnnotationSet] parsed result object
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- # @yieldparam err [StandardError] error object if request failed
146
- #
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- # @return [Google::Apis::GenomicsV1beta2::AnnotationSet]
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- #
149
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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- # @raise [Google::Apis::AuthorizationError] Authorization is required
152
- def get_annotation_set(annotation_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
153
- path = 'annotationSets/{annotationSetId}'
154
- command = make_simple_command(:get, path, options)
155
- command.response_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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- command.response_class = Google::Apis::GenomicsV1beta2::AnnotationSet
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- command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
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- command.query['fields'] = fields unless fields.nil?
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- command.query['quotaUser'] = quota_user unless quota_user.nil?
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- command.query['userIp'] = user_ip unless user_ip.nil?
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- execute_or_queue_command(command, &block)
162
- end
163
-
164
- # Updates an annotation set. The update must respect all mutability restrictions
165
- # and other invariants described on the annotation set resource. Caller must
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- # have WRITE permission for the associated dataset. This method supports patch
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- # semantics.
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- # @param [String] annotation_set_id
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- # The ID of the annotation set to be updated.
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- # @param [Google::Apis::GenomicsV1beta2::AnnotationSet] annotation_set_object
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- # @param [String] fields
172
- # Selector specifying which fields to include in a partial response.
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- # @param [String] quota_user
174
- # Available to use for quota purposes for server-side applications. Can be any
175
- # arbitrary string assigned to a user, but should not exceed 40 characters.
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- # Overrides userIp if both are provided.
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- # @param [String] user_ip
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- # IP address of the site where the request originates. Use this if you want to
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- # enforce per-user limits.
180
- # @param [Google::Apis::RequestOptions] options
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- # Request-specific options
182
- #
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- # @yield [result, err] Result & error if block supplied
184
- # @yieldparam result [Google::Apis::GenomicsV1beta2::AnnotationSet] parsed result object
185
- # @yieldparam err [StandardError] error object if request failed
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- #
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- # @return [Google::Apis::GenomicsV1beta2::AnnotationSet]
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- #
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- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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- # @raise [Google::Apis::AuthorizationError] Authorization is required
192
- def patch_annotation_set(annotation_set_id, annotation_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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- path = 'annotationSets/{annotationSetId}'
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- command = make_simple_command(:patch, path, options)
195
- command.request_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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- command.request_object = annotation_set_object
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- command.response_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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- command.response_class = Google::Apis::GenomicsV1beta2::AnnotationSet
199
- command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
200
- command.query['fields'] = fields unless fields.nil?
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- command.query['quotaUser'] = quota_user unless quota_user.nil?
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- command.query['userIp'] = user_ip unless user_ip.nil?
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- execute_or_queue_command(command, &block)
204
- end
205
-
206
- # Searches for annotation sets that match the given criteria. Results are
207
- # returned in a deterministic order. Caller must have READ permission for the
208
- # queried datasets.
209
- # @param [Google::Apis::GenomicsV1beta2::SearchAnnotationSetsRequest] search_annotation_sets_request_object
210
- # @param [String] fields
211
- # Selector specifying which fields to include in a partial response.
212
- # @param [String] quota_user
213
- # Available to use for quota purposes for server-side applications. Can be any
214
- # arbitrary string assigned to a user, but should not exceed 40 characters.
215
- # Overrides userIp if both are provided.
216
- # @param [String] user_ip
217
- # IP address of the site where the request originates. Use this if you want to
218
- # enforce per-user limits.
219
- # @param [Google::Apis::RequestOptions] options
220
- # Request-specific options
221
- #
222
- # @yield [result, err] Result & error if block supplied
223
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse] parsed result object
224
- # @yieldparam err [StandardError] error object if request failed
225
- #
226
- # @return [Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse]
227
- #
228
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
229
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
230
- # @raise [Google::Apis::AuthorizationError] Authorization is required
231
- def search_annotation_sets(search_annotation_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
232
- path = 'annotationSets/search'
233
- command = make_simple_command(:post, path, options)
234
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationSetsRequest::Representation
235
- command.request_object = search_annotation_sets_request_object
236
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse::Representation
237
- command.response_class = Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse
238
- command.query['fields'] = fields unless fields.nil?
239
- command.query['quotaUser'] = quota_user unless quota_user.nil?
240
- command.query['userIp'] = user_ip unless user_ip.nil?
241
- execute_or_queue_command(command, &block)
242
- end
243
-
244
- # Updates an annotation set. The update must respect all mutability restrictions
245
- # and other invariants described on the annotation set resource. Caller must
246
- # have WRITE permission for the associated dataset.
247
- # @param [String] annotation_set_id
248
- # The ID of the annotation set to be updated.
249
- # @param [Google::Apis::GenomicsV1beta2::AnnotationSet] annotation_set_object
250
- # @param [String] fields
251
- # Selector specifying which fields to include in a partial response.
252
- # @param [String] quota_user
253
- # Available to use for quota purposes for server-side applications. Can be any
254
- # arbitrary string assigned to a user, but should not exceed 40 characters.
255
- # Overrides userIp if both are provided.
256
- # @param [String] user_ip
257
- # IP address of the site where the request originates. Use this if you want to
258
- # enforce per-user limits.
259
- # @param [Google::Apis::RequestOptions] options
260
- # Request-specific options
261
- #
262
- # @yield [result, err] Result & error if block supplied
263
- # @yieldparam result [Google::Apis::GenomicsV1beta2::AnnotationSet] parsed result object
264
- # @yieldparam err [StandardError] error object if request failed
265
- #
266
- # @return [Google::Apis::GenomicsV1beta2::AnnotationSet]
267
- #
268
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
269
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
270
- # @raise [Google::Apis::AuthorizationError] Authorization is required
271
- def update_annotation_set(annotation_set_id, annotation_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
272
- path = 'annotationSets/{annotationSetId}'
273
- command = make_simple_command(:put, path, options)
274
- command.request_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
275
- command.request_object = annotation_set_object
276
- command.response_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
277
- command.response_class = Google::Apis::GenomicsV1beta2::AnnotationSet
278
- command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
279
- command.query['fields'] = fields unless fields.nil?
280
- command.query['quotaUser'] = quota_user unless quota_user.nil?
281
- command.query['userIp'] = user_ip unless user_ip.nil?
282
- execute_or_queue_command(command, &block)
283
- end
284
-
285
- # Creates one or more new annotations atomically. All annotations must belong to
286
- # the same annotation set. Caller must have WRITE permission for this annotation
287
- # set. For optimal performance, batch positionally adjacent annotations together.
288
- # If the request has a systemic issue, such as an attempt to write to an
289
- # inaccessible annotation set, the entire RPC will fail accordingly. For lesser
290
- # data issues, when possible an error will be isolated to the corresponding
291
- # batch entry in the response; the remaining well formed annotations will be
292
- # created normally.
293
- # @param [Google::Apis::GenomicsV1beta2::BatchCreateAnnotationsRequest] batch_create_annotations_request_object
294
- # @param [String] fields
295
- # Selector specifying which fields to include in a partial response.
296
- # @param [String] quota_user
297
- # Available to use for quota purposes for server-side applications. Can be any
298
- # arbitrary string assigned to a user, but should not exceed 40 characters.
299
- # Overrides userIp if both are provided.
300
- # @param [String] user_ip
301
- # IP address of the site where the request originates. Use this if you want to
302
- # enforce per-user limits.
303
- # @param [Google::Apis::RequestOptions] options
304
- # Request-specific options
305
- #
306
- # @yield [result, err] Result & error if block supplied
307
- # @yieldparam result [Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse] parsed result object
308
- # @yieldparam err [StandardError] error object if request failed
309
- #
310
- # @return [Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse]
311
- #
312
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
313
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
314
- # @raise [Google::Apis::AuthorizationError] Authorization is required
315
- def batch_create_annotations(batch_create_annotations_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
316
- path = 'annotations:batchCreate'
317
- command = make_simple_command(:post, path, options)
318
- command.request_representation = Google::Apis::GenomicsV1beta2::BatchCreateAnnotationsRequest::Representation
319
- command.request_object = batch_create_annotations_request_object
320
- command.response_representation = Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse::Representation
321
- command.response_class = Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse
322
- command.query['fields'] = fields unless fields.nil?
323
- command.query['quotaUser'] = quota_user unless quota_user.nil?
324
- command.query['userIp'] = user_ip unless user_ip.nil?
325
- execute_or_queue_command(command, &block)
326
- end
327
-
328
- # Creates a new annotation. Caller must have WRITE permission for the associated
329
- # annotation set.
330
- # @param [Google::Apis::GenomicsV1beta2::Annotation] annotation_object
331
- # @param [String] fields
332
- # Selector specifying which fields to include in a partial response.
333
- # @param [String] quota_user
334
- # Available to use for quota purposes for server-side applications. Can be any
335
- # arbitrary string assigned to a user, but should not exceed 40 characters.
336
- # Overrides userIp if both are provided.
337
- # @param [String] user_ip
338
- # IP address of the site where the request originates. Use this if you want to
339
- # enforce per-user limits.
340
- # @param [Google::Apis::RequestOptions] options
341
- # Request-specific options
342
- #
343
- # @yield [result, err] Result & error if block supplied
344
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
345
- # @yieldparam err [StandardError] error object if request failed
346
- #
347
- # @return [Google::Apis::GenomicsV1beta2::Annotation]
348
- #
349
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
350
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
351
- # @raise [Google::Apis::AuthorizationError] Authorization is required
352
- def create_annotation(annotation_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
353
- path = 'annotations'
354
- command = make_simple_command(:post, path, options)
355
- command.request_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
356
- command.request_object = annotation_object
357
- command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
358
- command.response_class = Google::Apis::GenomicsV1beta2::Annotation
359
- command.query['fields'] = fields unless fields.nil?
360
- command.query['quotaUser'] = quota_user unless quota_user.nil?
361
- command.query['userIp'] = user_ip unless user_ip.nil?
362
- execute_or_queue_command(command, &block)
363
- end
364
-
365
- # Deletes an annotation. Caller must have WRITE permission for the associated
366
- # annotation set.
367
- # @param [String] annotation_id
368
- # The ID of the annotation set to be deleted.
369
- # @param [String] fields
370
- # Selector specifying which fields to include in a partial response.
371
- # @param [String] quota_user
372
- # Available to use for quota purposes for server-side applications. Can be any
373
- # arbitrary string assigned to a user, but should not exceed 40 characters.
374
- # Overrides userIp if both are provided.
375
- # @param [String] user_ip
376
- # IP address of the site where the request originates. Use this if you want to
377
- # enforce per-user limits.
378
- # @param [Google::Apis::RequestOptions] options
379
- # Request-specific options
380
- #
381
- # @yield [result, err] Result & error if block supplied
382
- # @yieldparam result [NilClass] No result returned for this method
383
- # @yieldparam err [StandardError] error object if request failed
384
- #
385
- # @return [void]
386
- #
387
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
388
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
389
- # @raise [Google::Apis::AuthorizationError] Authorization is required
390
- def delete_annotation(annotation_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
391
- path = 'annotations/{annotationId}'
392
- command = make_simple_command(:delete, path, options)
393
- command.params['annotationId'] = annotation_id unless annotation_id.nil?
394
- command.query['fields'] = fields unless fields.nil?
395
- command.query['quotaUser'] = quota_user unless quota_user.nil?
396
- command.query['userIp'] = user_ip unless user_ip.nil?
397
- execute_or_queue_command(command, &block)
398
- end
399
-
400
- # Gets an annotation. Caller must have READ permission for the associated
401
- # annotation set.
402
- # @param [String] annotation_id
403
- # The ID of the annotation set to be retrieved.
404
- # @param [String] fields
405
- # Selector specifying which fields to include in a partial response.
406
- # @param [String] quota_user
407
- # Available to use for quota purposes for server-side applications. Can be any
408
- # arbitrary string assigned to a user, but should not exceed 40 characters.
409
- # Overrides userIp if both are provided.
410
- # @param [String] user_ip
411
- # IP address of the site where the request originates. Use this if you want to
412
- # enforce per-user limits.
413
- # @param [Google::Apis::RequestOptions] options
414
- # Request-specific options
415
- #
416
- # @yield [result, err] Result & error if block supplied
417
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
418
- # @yieldparam err [StandardError] error object if request failed
419
- #
420
- # @return [Google::Apis::GenomicsV1beta2::Annotation]
421
- #
422
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
423
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
424
- # @raise [Google::Apis::AuthorizationError] Authorization is required
425
- def get_annotation(annotation_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
426
- path = 'annotations/{annotationId}'
427
- command = make_simple_command(:get, path, options)
428
- command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
429
- command.response_class = Google::Apis::GenomicsV1beta2::Annotation
430
- command.params['annotationId'] = annotation_id unless annotation_id.nil?
431
- command.query['fields'] = fields unless fields.nil?
432
- command.query['quotaUser'] = quota_user unless quota_user.nil?
433
- command.query['userIp'] = user_ip unless user_ip.nil?
434
- execute_or_queue_command(command, &block)
435
- end
436
-
437
- # Updates an annotation. The update must respect all mutability restrictions and
438
- # other invariants described on the annotation resource. Caller must have WRITE
439
- # permission for the associated dataset. This method supports patch semantics.
440
- # @param [String] annotation_id
441
- # The ID of the annotation set to be updated.
442
- # @param [Google::Apis::GenomicsV1beta2::Annotation] annotation_object
443
- # @param [String] fields
444
- # Selector specifying which fields to include in a partial response.
445
- # @param [String] quota_user
446
- # Available to use for quota purposes for server-side applications. Can be any
447
- # arbitrary string assigned to a user, but should not exceed 40 characters.
448
- # Overrides userIp if both are provided.
449
- # @param [String] user_ip
450
- # IP address of the site where the request originates. Use this if you want to
451
- # enforce per-user limits.
452
- # @param [Google::Apis::RequestOptions] options
453
- # Request-specific options
454
- #
455
- # @yield [result, err] Result & error if block supplied
456
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
457
- # @yieldparam err [StandardError] error object if request failed
458
- #
459
- # @return [Google::Apis::GenomicsV1beta2::Annotation]
460
- #
461
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
462
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
463
- # @raise [Google::Apis::AuthorizationError] Authorization is required
464
- def patch_annotation(annotation_id, annotation_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
465
- path = 'annotations/{annotationId}'
466
- command = make_simple_command(:patch, path, options)
467
- command.request_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
468
- command.request_object = annotation_object
469
- command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
470
- command.response_class = Google::Apis::GenomicsV1beta2::Annotation
471
- command.params['annotationId'] = annotation_id unless annotation_id.nil?
472
- command.query['fields'] = fields unless fields.nil?
473
- command.query['quotaUser'] = quota_user unless quota_user.nil?
474
- command.query['userIp'] = user_ip unless user_ip.nil?
475
- execute_or_queue_command(command, &block)
476
- end
477
-
478
- # Searches for annotations that match the given criteria. Results are returned
479
- # ordered by start position. Annotations that have matching start positions are
480
- # ordered deterministically. Caller must have READ permission for the queried
481
- # annotation sets.
482
- # @param [Google::Apis::GenomicsV1beta2::SearchAnnotationsRequest] search_annotations_request_object
483
- # @param [String] fields
484
- # Selector specifying which fields to include in a partial response.
485
- # @param [String] quota_user
486
- # Available to use for quota purposes for server-side applications. Can be any
487
- # arbitrary string assigned to a user, but should not exceed 40 characters.
488
- # Overrides userIp if both are provided.
489
- # @param [String] user_ip
490
- # IP address of the site where the request originates. Use this if you want to
491
- # enforce per-user limits.
492
- # @param [Google::Apis::RequestOptions] options
493
- # Request-specific options
494
- #
495
- # @yield [result, err] Result & error if block supplied
496
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse] parsed result object
497
- # @yieldparam err [StandardError] error object if request failed
498
- #
499
- # @return [Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse]
500
- #
501
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
502
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
503
- # @raise [Google::Apis::AuthorizationError] Authorization is required
504
- def search_annotations(search_annotations_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
505
- path = 'annotations/search'
506
- command = make_simple_command(:post, path, options)
507
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationsRequest::Representation
508
- command.request_object = search_annotations_request_object
509
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse::Representation
510
- command.response_class = Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse
511
- command.query['fields'] = fields unless fields.nil?
512
- command.query['quotaUser'] = quota_user unless quota_user.nil?
513
- command.query['userIp'] = user_ip unless user_ip.nil?
514
- execute_or_queue_command(command, &block)
515
- end
516
-
517
- # Updates an annotation. The update must respect all mutability restrictions and
518
- # other invariants described on the annotation resource. Caller must have WRITE
519
- # permission for the associated dataset.
520
- # @param [String] annotation_id
521
- # The ID of the annotation set to be updated.
522
- # @param [Google::Apis::GenomicsV1beta2::Annotation] annotation_object
523
- # @param [String] fields
524
- # Selector specifying which fields to include in a partial response.
525
- # @param [String] quota_user
526
- # Available to use for quota purposes for server-side applications. Can be any
527
- # arbitrary string assigned to a user, but should not exceed 40 characters.
528
- # Overrides userIp if both are provided.
529
- # @param [String] user_ip
530
- # IP address of the site where the request originates. Use this if you want to
531
- # enforce per-user limits.
532
- # @param [Google::Apis::RequestOptions] options
533
- # Request-specific options
534
- #
535
- # @yield [result, err] Result & error if block supplied
536
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
537
- # @yieldparam err [StandardError] error object if request failed
538
- #
539
- # @return [Google::Apis::GenomicsV1beta2::Annotation]
540
- #
541
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
542
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
543
- # @raise [Google::Apis::AuthorizationError] Authorization is required
544
- def update_annotation(annotation_id, annotation_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
545
- path = 'annotations/{annotationId}'
546
- command = make_simple_command(:put, path, options)
547
- command.request_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
548
- command.request_object = annotation_object
549
- command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
550
- command.response_class = Google::Apis::GenomicsV1beta2::Annotation
551
- command.params['annotationId'] = annotation_id unless annotation_id.nil?
552
- command.query['fields'] = fields unless fields.nil?
553
- command.query['quotaUser'] = quota_user unless quota_user.nil?
554
- command.query['userIp'] = user_ip unless user_ip.nil?
555
- execute_or_queue_command(command, &block)
556
- end
557
-
558
- # Creates a new call set.
559
- # @param [Google::Apis::GenomicsV1beta2::CallSet] call_set_object
560
- # @param [String] fields
561
- # Selector specifying which fields to include in a partial response.
562
- # @param [String] quota_user
563
- # Available to use for quota purposes for server-side applications. Can be any
564
- # arbitrary string assigned to a user, but should not exceed 40 characters.
565
- # Overrides userIp if both are provided.
566
- # @param [String] user_ip
567
- # IP address of the site where the request originates. Use this if you want to
568
- # enforce per-user limits.
569
- # @param [Google::Apis::RequestOptions] options
570
- # Request-specific options
571
- #
572
- # @yield [result, err] Result & error if block supplied
573
- # @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
574
- # @yieldparam err [StandardError] error object if request failed
575
- #
576
- # @return [Google::Apis::GenomicsV1beta2::CallSet]
577
- #
578
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
579
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
580
- # @raise [Google::Apis::AuthorizationError] Authorization is required
581
- def create_call_set(call_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
582
- path = 'callsets'
583
- command = make_simple_command(:post, path, options)
584
- command.request_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
585
- command.request_object = call_set_object
586
- command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
587
- command.response_class = Google::Apis::GenomicsV1beta2::CallSet
588
- command.query['fields'] = fields unless fields.nil?
589
- command.query['quotaUser'] = quota_user unless quota_user.nil?
590
- command.query['userIp'] = user_ip unless user_ip.nil?
591
- execute_or_queue_command(command, &block)
592
- end
593
-
594
- # Deletes a call set.
595
- # @param [String] call_set_id
596
- # The ID of the call set to be deleted.
597
- # @param [String] fields
598
- # Selector specifying which fields to include in a partial response.
599
- # @param [String] quota_user
600
- # Available to use for quota purposes for server-side applications. Can be any
601
- # arbitrary string assigned to a user, but should not exceed 40 characters.
602
- # Overrides userIp if both are provided.
603
- # @param [String] user_ip
604
- # IP address of the site where the request originates. Use this if you want to
605
- # enforce per-user limits.
606
- # @param [Google::Apis::RequestOptions] options
607
- # Request-specific options
608
- #
609
- # @yield [result, err] Result & error if block supplied
610
- # @yieldparam result [NilClass] No result returned for this method
611
- # @yieldparam err [StandardError] error object if request failed
612
- #
613
- # @return [void]
614
- #
615
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
616
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
617
- # @raise [Google::Apis::AuthorizationError] Authorization is required
618
- def delete_call_set(call_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
619
- path = 'callsets/{callSetId}'
620
- command = make_simple_command(:delete, path, options)
621
- command.params['callSetId'] = call_set_id unless call_set_id.nil?
622
- command.query['fields'] = fields unless fields.nil?
623
- command.query['quotaUser'] = quota_user unless quota_user.nil?
624
- command.query['userIp'] = user_ip unless user_ip.nil?
625
- execute_or_queue_command(command, &block)
626
- end
627
-
628
- # Gets a call set by ID.
629
- # @param [String] call_set_id
630
- # The ID of the call set.
631
- # @param [String] fields
632
- # Selector specifying which fields to include in a partial response.
633
- # @param [String] quota_user
634
- # Available to use for quota purposes for server-side applications. Can be any
635
- # arbitrary string assigned to a user, but should not exceed 40 characters.
636
- # Overrides userIp if both are provided.
637
- # @param [String] user_ip
638
- # IP address of the site where the request originates. Use this if you want to
639
- # enforce per-user limits.
640
- # @param [Google::Apis::RequestOptions] options
641
- # Request-specific options
642
- #
643
- # @yield [result, err] Result & error if block supplied
644
- # @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
645
- # @yieldparam err [StandardError] error object if request failed
646
- #
647
- # @return [Google::Apis::GenomicsV1beta2::CallSet]
648
- #
649
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
650
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
651
- # @raise [Google::Apis::AuthorizationError] Authorization is required
652
- def get_call_set(call_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
653
- path = 'callsets/{callSetId}'
654
- command = make_simple_command(:get, path, options)
655
- command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
656
- command.response_class = Google::Apis::GenomicsV1beta2::CallSet
657
- command.params['callSetId'] = call_set_id unless call_set_id.nil?
658
- command.query['fields'] = fields unless fields.nil?
659
- command.query['quotaUser'] = quota_user unless quota_user.nil?
660
- command.query['userIp'] = user_ip unless user_ip.nil?
661
- execute_or_queue_command(command, &block)
662
- end
663
-
664
- # Updates a call set. This method supports patch semantics.
665
- # @param [String] call_set_id
666
- # The ID of the call set to be updated.
667
- # @param [Google::Apis::GenomicsV1beta2::CallSet] call_set_object
668
- # @param [String] fields
669
- # Selector specifying which fields to include in a partial response.
670
- # @param [String] quota_user
671
- # Available to use for quota purposes for server-side applications. Can be any
672
- # arbitrary string assigned to a user, but should not exceed 40 characters.
673
- # Overrides userIp if both are provided.
674
- # @param [String] user_ip
675
- # IP address of the site where the request originates. Use this if you want to
676
- # enforce per-user limits.
677
- # @param [Google::Apis::RequestOptions] options
678
- # Request-specific options
679
- #
680
- # @yield [result, err] Result & error if block supplied
681
- # @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
682
- # @yieldparam err [StandardError] error object if request failed
683
- #
684
- # @return [Google::Apis::GenomicsV1beta2::CallSet]
685
- #
686
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
687
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
688
- # @raise [Google::Apis::AuthorizationError] Authorization is required
689
- def patch_call_set(call_set_id, call_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
690
- path = 'callsets/{callSetId}'
691
- command = make_simple_command(:patch, path, options)
692
- command.request_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
693
- command.request_object = call_set_object
694
- command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
695
- command.response_class = Google::Apis::GenomicsV1beta2::CallSet
696
- command.params['callSetId'] = call_set_id unless call_set_id.nil?
697
- command.query['fields'] = fields unless fields.nil?
698
- command.query['quotaUser'] = quota_user unless quota_user.nil?
699
- command.query['userIp'] = user_ip unless user_ip.nil?
700
- execute_or_queue_command(command, &block)
701
- end
702
-
703
- # Gets a list of call sets matching the criteria.
704
- # Implements GlobalAllianceApi.searchCallSets.
705
- # @param [Google::Apis::GenomicsV1beta2::SearchCallSetsRequest] search_call_sets_request_object
706
- # @param [String] fields
707
- # Selector specifying which fields to include in a partial response.
708
- # @param [String] quota_user
709
- # Available to use for quota purposes for server-side applications. Can be any
710
- # arbitrary string assigned to a user, but should not exceed 40 characters.
711
- # Overrides userIp if both are provided.
712
- # @param [String] user_ip
713
- # IP address of the site where the request originates. Use this if you want to
714
- # enforce per-user limits.
715
- # @param [Google::Apis::RequestOptions] options
716
- # Request-specific options
717
- #
718
- # @yield [result, err] Result & error if block supplied
719
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchCallSetsResponse] parsed result object
720
- # @yieldparam err [StandardError] error object if request failed
721
- #
722
- # @return [Google::Apis::GenomicsV1beta2::SearchCallSetsResponse]
723
- #
724
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
725
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
726
- # @raise [Google::Apis::AuthorizationError] Authorization is required
727
- def search_call_sets(search_call_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
728
- path = 'callsets/search'
729
- command = make_simple_command(:post, path, options)
730
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchCallSetsRequest::Representation
731
- command.request_object = search_call_sets_request_object
732
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchCallSetsResponse::Representation
733
- command.response_class = Google::Apis::GenomicsV1beta2::SearchCallSetsResponse
734
- command.query['fields'] = fields unless fields.nil?
735
- command.query['quotaUser'] = quota_user unless quota_user.nil?
736
- command.query['userIp'] = user_ip unless user_ip.nil?
737
- execute_or_queue_command(command, &block)
738
- end
739
-
740
- # Updates a call set.
741
- # @param [String] call_set_id
742
- # The ID of the call set to be updated.
743
- # @param [Google::Apis::GenomicsV1beta2::CallSet] call_set_object
744
- # @param [String] fields
745
- # Selector specifying which fields to include in a partial response.
746
- # @param [String] quota_user
747
- # Available to use for quota purposes for server-side applications. Can be any
748
- # arbitrary string assigned to a user, but should not exceed 40 characters.
749
- # Overrides userIp if both are provided.
750
- # @param [String] user_ip
751
- # IP address of the site where the request originates. Use this if you want to
752
- # enforce per-user limits.
753
- # @param [Google::Apis::RequestOptions] options
754
- # Request-specific options
755
- #
756
- # @yield [result, err] Result & error if block supplied
757
- # @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
758
- # @yieldparam err [StandardError] error object if request failed
759
- #
760
- # @return [Google::Apis::GenomicsV1beta2::CallSet]
761
- #
762
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
763
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
764
- # @raise [Google::Apis::AuthorizationError] Authorization is required
765
- def update_call_set(call_set_id, call_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
766
- path = 'callsets/{callSetId}'
767
- command = make_simple_command(:put, path, options)
768
- command.request_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
769
- command.request_object = call_set_object
770
- command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
771
- command.response_class = Google::Apis::GenomicsV1beta2::CallSet
772
- command.params['callSetId'] = call_set_id unless call_set_id.nil?
773
- command.query['fields'] = fields unless fields.nil?
774
- command.query['quotaUser'] = quota_user unless quota_user.nil?
775
- command.query['userIp'] = user_ip unless user_ip.nil?
776
- execute_or_queue_command(command, &block)
777
- end
778
-
779
- # Creates a new dataset.
780
- # @param [Google::Apis::GenomicsV1beta2::Dataset] dataset_object
781
- # @param [String] fields
782
- # Selector specifying which fields to include in a partial response.
783
- # @param [String] quota_user
784
- # Available to use for quota purposes for server-side applications. Can be any
785
- # arbitrary string assigned to a user, but should not exceed 40 characters.
786
- # Overrides userIp if both are provided.
787
- # @param [String] user_ip
788
- # IP address of the site where the request originates. Use this if you want to
789
- # enforce per-user limits.
790
- # @param [Google::Apis::RequestOptions] options
791
- # Request-specific options
792
- #
793
- # @yield [result, err] Result & error if block supplied
794
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
795
- # @yieldparam err [StandardError] error object if request failed
796
- #
797
- # @return [Google::Apis::GenomicsV1beta2::Dataset]
798
- #
799
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
800
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
801
- # @raise [Google::Apis::AuthorizationError] Authorization is required
802
- def create_dataset(dataset_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
803
- path = 'datasets'
804
- command = make_simple_command(:post, path, options)
805
- command.request_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
806
- command.request_object = dataset_object
807
- command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
808
- command.response_class = Google::Apis::GenomicsV1beta2::Dataset
809
- command.query['fields'] = fields unless fields.nil?
810
- command.query['quotaUser'] = quota_user unless quota_user.nil?
811
- command.query['userIp'] = user_ip unless user_ip.nil?
812
- execute_or_queue_command(command, &block)
813
- end
814
-
815
- # Deletes a dataset.
816
- # @param [String] dataset_id
817
- # The ID of the dataset to be deleted.
818
- # @param [String] fields
819
- # Selector specifying which fields to include in a partial response.
820
- # @param [String] quota_user
821
- # Available to use for quota purposes for server-side applications. Can be any
822
- # arbitrary string assigned to a user, but should not exceed 40 characters.
823
- # Overrides userIp if both are provided.
824
- # @param [String] user_ip
825
- # IP address of the site where the request originates. Use this if you want to
826
- # enforce per-user limits.
827
- # @param [Google::Apis::RequestOptions] options
828
- # Request-specific options
829
- #
830
- # @yield [result, err] Result & error if block supplied
831
- # @yieldparam result [NilClass] No result returned for this method
832
- # @yieldparam err [StandardError] error object if request failed
833
- #
834
- # @return [void]
835
- #
836
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
837
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
838
- # @raise [Google::Apis::AuthorizationError] Authorization is required
839
- def delete_dataset(dataset_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
840
- path = 'datasets/{datasetId}'
841
- command = make_simple_command(:delete, path, options)
842
- command.params['datasetId'] = dataset_id unless dataset_id.nil?
843
- command.query['fields'] = fields unless fields.nil?
844
- command.query['quotaUser'] = quota_user unless quota_user.nil?
845
- command.query['userIp'] = user_ip unless user_ip.nil?
846
- execute_or_queue_command(command, &block)
847
- end
848
-
849
- # Gets a dataset by ID.
850
- # @param [String] dataset_id
851
- # The ID of the dataset.
852
- # @param [String] fields
853
- # Selector specifying which fields to include in a partial response.
854
- # @param [String] quota_user
855
- # Available to use for quota purposes for server-side applications. Can be any
856
- # arbitrary string assigned to a user, but should not exceed 40 characters.
857
- # Overrides userIp if both are provided.
858
- # @param [String] user_ip
859
- # IP address of the site where the request originates. Use this if you want to
860
- # enforce per-user limits.
861
- # @param [Google::Apis::RequestOptions] options
862
- # Request-specific options
863
- #
864
- # @yield [result, err] Result & error if block supplied
865
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
866
- # @yieldparam err [StandardError] error object if request failed
867
- #
868
- # @return [Google::Apis::GenomicsV1beta2::Dataset]
869
- #
870
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
871
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
872
- # @raise [Google::Apis::AuthorizationError] Authorization is required
873
- def get_dataset(dataset_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
874
- path = 'datasets/{datasetId}'
875
- command = make_simple_command(:get, path, options)
876
- command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
877
- command.response_class = Google::Apis::GenomicsV1beta2::Dataset
878
- command.params['datasetId'] = dataset_id unless dataset_id.nil?
879
- command.query['fields'] = fields unless fields.nil?
880
- command.query['quotaUser'] = quota_user unless quota_user.nil?
881
- command.query['userIp'] = user_ip unless user_ip.nil?
882
- execute_or_queue_command(command, &block)
883
- end
884
-
885
- # Lists datasets within a project.
886
- # @param [Fixnum] page_size
887
- # The maximum number of results returned by this request. If unspecified,
888
- # defaults to 50.
889
- # @param [String] page_token
890
- # The continuation token, which is used to page through large result sets. To
891
- # get the next page of results, set this parameter to the value of nextPageToken
892
- # from the previous response.
893
- # @param [String] project_number
894
- # Required. The project to list datasets for.
895
- # @param [String] fields
896
- # Selector specifying which fields to include in a partial response.
897
- # @param [String] quota_user
898
- # Available to use for quota purposes for server-side applications. Can be any
899
- # arbitrary string assigned to a user, but should not exceed 40 characters.
900
- # Overrides userIp if both are provided.
901
- # @param [String] user_ip
902
- # IP address of the site where the request originates. Use this if you want to
903
- # enforce per-user limits.
904
- # @param [Google::Apis::RequestOptions] options
905
- # Request-specific options
906
- #
907
- # @yield [result, err] Result & error if block supplied
908
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ListDatasetsResponse] parsed result object
909
- # @yieldparam err [StandardError] error object if request failed
910
- #
911
- # @return [Google::Apis::GenomicsV1beta2::ListDatasetsResponse]
912
- #
913
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
914
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
915
- # @raise [Google::Apis::AuthorizationError] Authorization is required
916
- def list_datasets(page_size: nil, page_token: nil, project_number: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
917
- path = 'datasets'
918
- command = make_simple_command(:get, path, options)
919
- command.response_representation = Google::Apis::GenomicsV1beta2::ListDatasetsResponse::Representation
920
- command.response_class = Google::Apis::GenomicsV1beta2::ListDatasetsResponse
921
- command.query['pageSize'] = page_size unless page_size.nil?
922
- command.query['pageToken'] = page_token unless page_token.nil?
923
- command.query['projectNumber'] = project_number unless project_number.nil?
924
- command.query['fields'] = fields unless fields.nil?
925
- command.query['quotaUser'] = quota_user unless quota_user.nil?
926
- command.query['userIp'] = user_ip unless user_ip.nil?
927
- execute_or_queue_command(command, &block)
928
- end
929
-
930
- # Updates a dataset. This method supports patch semantics.
931
- # @param [String] dataset_id
932
- # The ID of the dataset to be updated.
933
- # @param [Google::Apis::GenomicsV1beta2::Dataset] dataset_object
934
- # @param [String] fields
935
- # Selector specifying which fields to include in a partial response.
936
- # @param [String] quota_user
937
- # Available to use for quota purposes for server-side applications. Can be any
938
- # arbitrary string assigned to a user, but should not exceed 40 characters.
939
- # Overrides userIp if both are provided.
940
- # @param [String] user_ip
941
- # IP address of the site where the request originates. Use this if you want to
942
- # enforce per-user limits.
943
- # @param [Google::Apis::RequestOptions] options
944
- # Request-specific options
945
- #
946
- # @yield [result, err] Result & error if block supplied
947
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
948
- # @yieldparam err [StandardError] error object if request failed
949
- #
950
- # @return [Google::Apis::GenomicsV1beta2::Dataset]
951
- #
952
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
953
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
954
- # @raise [Google::Apis::AuthorizationError] Authorization is required
955
- def patch_dataset(dataset_id, dataset_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
956
- path = 'datasets/{datasetId}'
957
- command = make_simple_command(:patch, path, options)
958
- command.request_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
959
- command.request_object = dataset_object
960
- command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
961
- command.response_class = Google::Apis::GenomicsV1beta2::Dataset
962
- command.params['datasetId'] = dataset_id unless dataset_id.nil?
963
- command.query['fields'] = fields unless fields.nil?
964
- command.query['quotaUser'] = quota_user unless quota_user.nil?
965
- command.query['userIp'] = user_ip unless user_ip.nil?
966
- execute_or_queue_command(command, &block)
967
- end
968
-
969
- # Undeletes a dataset by restoring a dataset which was deleted via this API.
970
- # This operation is only possible for a week after the deletion occurred.
971
- # @param [String] dataset_id
972
- # The ID of the dataset to be undeleted.
973
- # @param [String] fields
974
- # Selector specifying which fields to include in a partial response.
975
- # @param [String] quota_user
976
- # Available to use for quota purposes for server-side applications. Can be any
977
- # arbitrary string assigned to a user, but should not exceed 40 characters.
978
- # Overrides userIp if both are provided.
979
- # @param [String] user_ip
980
- # IP address of the site where the request originates. Use this if you want to
981
- # enforce per-user limits.
982
- # @param [Google::Apis::RequestOptions] options
983
- # Request-specific options
984
- #
985
- # @yield [result, err] Result & error if block supplied
986
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
987
- # @yieldparam err [StandardError] error object if request failed
988
- #
989
- # @return [Google::Apis::GenomicsV1beta2::Dataset]
990
- #
991
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
992
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
993
- # @raise [Google::Apis::AuthorizationError] Authorization is required
994
- def undelete_dataset(dataset_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
995
- path = 'datasets/{datasetId}/undelete'
996
- command = make_simple_command(:post, path, options)
997
- command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
998
- command.response_class = Google::Apis::GenomicsV1beta2::Dataset
999
- command.params['datasetId'] = dataset_id unless dataset_id.nil?
1000
- command.query['fields'] = fields unless fields.nil?
1001
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1002
- command.query['userIp'] = user_ip unless user_ip.nil?
1003
- execute_or_queue_command(command, &block)
1004
- end
1005
-
1006
- # Updates a dataset.
1007
- # @param [String] dataset_id
1008
- # The ID of the dataset to be updated.
1009
- # @param [Google::Apis::GenomicsV1beta2::Dataset] dataset_object
1010
- # @param [String] fields
1011
- # Selector specifying which fields to include in a partial response.
1012
- # @param [String] quota_user
1013
- # Available to use for quota purposes for server-side applications. Can be any
1014
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1015
- # Overrides userIp if both are provided.
1016
- # @param [String] user_ip
1017
- # IP address of the site where the request originates. Use this if you want to
1018
- # enforce per-user limits.
1019
- # @param [Google::Apis::RequestOptions] options
1020
- # Request-specific options
1021
- #
1022
- # @yield [result, err] Result & error if block supplied
1023
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
1024
- # @yieldparam err [StandardError] error object if request failed
1025
- #
1026
- # @return [Google::Apis::GenomicsV1beta2::Dataset]
1027
- #
1028
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1029
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1030
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1031
- def update_dataset(dataset_id, dataset_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1032
- path = 'datasets/{datasetId}'
1033
- command = make_simple_command(:put, path, options)
1034
- command.request_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
1035
- command.request_object = dataset_object
1036
- command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
1037
- command.response_class = Google::Apis::GenomicsV1beta2::Dataset
1038
- command.params['datasetId'] = dataset_id unless dataset_id.nil?
1039
- command.query['fields'] = fields unless fields.nil?
1040
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1041
- command.query['userIp'] = user_ip unless user_ip.nil?
1042
- execute_or_queue_command(command, &block)
1043
- end
1044
-
1045
- # Creates and asynchronously runs an ad-hoc job. This is an experimental call
1046
- # and may be removed or changed at any time.
1047
- # @param [Google::Apis::GenomicsV1beta2::ExperimentalCreateJobRequest] experimental_create_job_request_object
1048
- # @param [String] fields
1049
- # Selector specifying which fields to include in a partial response.
1050
- # @param [String] quota_user
1051
- # Available to use for quota purposes for server-side applications. Can be any
1052
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1053
- # Overrides userIp if both are provided.
1054
- # @param [String] user_ip
1055
- # IP address of the site where the request originates. Use this if you want to
1056
- # enforce per-user limits.
1057
- # @param [Google::Apis::RequestOptions] options
1058
- # Request-specific options
1059
- #
1060
- # @yield [result, err] Result & error if block supplied
1061
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse] parsed result object
1062
- # @yieldparam err [StandardError] error object if request failed
1063
- #
1064
- # @return [Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse]
1065
- #
1066
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1067
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1068
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1069
- def create_experimental_job(experimental_create_job_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1070
- path = 'experimental/jobs/create'
1071
- command = make_simple_command(:post, path, options)
1072
- command.request_representation = Google::Apis::GenomicsV1beta2::ExperimentalCreateJobRequest::Representation
1073
- command.request_object = experimental_create_job_request_object
1074
- command.response_representation = Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse::Representation
1075
- command.response_class = Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse
1076
- command.query['fields'] = fields unless fields.nil?
1077
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1078
- command.query['userIp'] = user_ip unless user_ip.nil?
1079
- execute_or_queue_command(command, &block)
1080
- end
1081
-
1082
- # Cancels a job by ID. Note that it is possible for partial results to be
1083
- # generated and stored for cancelled jobs.
1084
- # @param [String] job_id
1085
- # Required. The ID of the job.
1086
- # @param [String] fields
1087
- # Selector specifying which fields to include in a partial response.
1088
- # @param [String] quota_user
1089
- # Available to use for quota purposes for server-side applications. Can be any
1090
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1091
- # Overrides userIp if both are provided.
1092
- # @param [String] user_ip
1093
- # IP address of the site where the request originates. Use this if you want to
1094
- # enforce per-user limits.
1095
- # @param [Google::Apis::RequestOptions] options
1096
- # Request-specific options
1097
- #
1098
- # @yield [result, err] Result & error if block supplied
1099
- # @yieldparam result [NilClass] No result returned for this method
1100
- # @yieldparam err [StandardError] error object if request failed
1101
- #
1102
- # @return [void]
1103
- #
1104
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1105
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1106
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1107
- def cancel_job(job_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1108
- path = 'jobs/{jobId}/cancel'
1109
- command = make_simple_command(:post, path, options)
1110
- command.params['jobId'] = job_id unless job_id.nil?
1111
- command.query['fields'] = fields unless fields.nil?
1112
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1113
- command.query['userIp'] = user_ip unless user_ip.nil?
1114
- execute_or_queue_command(command, &block)
1115
- end
1116
-
1117
- # Gets a job by ID.
1118
- # @param [String] job_id
1119
- # Required. The ID of the job.
1120
- # @param [String] fields
1121
- # Selector specifying which fields to include in a partial response.
1122
- # @param [String] quota_user
1123
- # Available to use for quota purposes for server-side applications. Can be any
1124
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1125
- # Overrides userIp if both are provided.
1126
- # @param [String] user_ip
1127
- # IP address of the site where the request originates. Use this if you want to
1128
- # enforce per-user limits.
1129
- # @param [Google::Apis::RequestOptions] options
1130
- # Request-specific options
1131
- #
1132
- # @yield [result, err] Result & error if block supplied
1133
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Job] parsed result object
1134
- # @yieldparam err [StandardError] error object if request failed
1135
- #
1136
- # @return [Google::Apis::GenomicsV1beta2::Job]
1137
- #
1138
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1139
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1140
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1141
- def get_job(job_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1142
- path = 'jobs/{jobId}'
1143
- command = make_simple_command(:get, path, options)
1144
- command.response_representation = Google::Apis::GenomicsV1beta2::Job::Representation
1145
- command.response_class = Google::Apis::GenomicsV1beta2::Job
1146
- command.params['jobId'] = job_id unless job_id.nil?
1147
- command.query['fields'] = fields unless fields.nil?
1148
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1149
- command.query['userIp'] = user_ip unless user_ip.nil?
1150
- execute_or_queue_command(command, &block)
1151
- end
1152
-
1153
- # Gets a list of jobs matching the criteria.
1154
- # @param [Google::Apis::GenomicsV1beta2::SearchJobsRequest] search_jobs_request_object
1155
- # @param [String] fields
1156
- # Selector specifying which fields to include in a partial response.
1157
- # @param [String] quota_user
1158
- # Available to use for quota purposes for server-side applications. Can be any
1159
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1160
- # Overrides userIp if both are provided.
1161
- # @param [String] user_ip
1162
- # IP address of the site where the request originates. Use this if you want to
1163
- # enforce per-user limits.
1164
- # @param [Google::Apis::RequestOptions] options
1165
- # Request-specific options
1166
- #
1167
- # @yield [result, err] Result & error if block supplied
1168
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchJobsResponse] parsed result object
1169
- # @yieldparam err [StandardError] error object if request failed
1170
- #
1171
- # @return [Google::Apis::GenomicsV1beta2::SearchJobsResponse]
1172
- #
1173
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1174
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1175
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1176
- def search_jobs(search_jobs_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1177
- path = 'jobs/search'
1178
- command = make_simple_command(:post, path, options)
1179
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchJobsRequest::Representation
1180
- command.request_object = search_jobs_request_object
1181
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchJobsResponse::Representation
1182
- command.response_class = Google::Apis::GenomicsV1beta2::SearchJobsResponse
1183
- command.query['fields'] = fields unless fields.nil?
1184
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1185
- command.query['userIp'] = user_ip unless user_ip.nil?
1186
- execute_or_queue_command(command, &block)
1187
- end
1188
-
1189
- # Aligns read data from existing read group sets or files from Google Cloud
1190
- # Storage. See the alignment and variant calling documentation for more details.
1191
- # @param [Google::Apis::GenomicsV1beta2::AlignReadGroupSetsRequest] align_read_group_sets_request_object
1192
- # @param [String] fields
1193
- # Selector specifying which fields to include in a partial response.
1194
- # @param [String] quota_user
1195
- # Available to use for quota purposes for server-side applications. Can be any
1196
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1197
- # Overrides userIp if both are provided.
1198
- # @param [String] user_ip
1199
- # IP address of the site where the request originates. Use this if you want to
1200
- # enforce per-user limits.
1201
- # @param [Google::Apis::RequestOptions] options
1202
- # Request-specific options
1203
- #
1204
- # @yield [result, err] Result & error if block supplied
1205
- # @yieldparam result [Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse] parsed result object
1206
- # @yieldparam err [StandardError] error object if request failed
1207
- #
1208
- # @return [Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse]
1209
- #
1210
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1211
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1212
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1213
- def align_read_group_sets(align_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1214
- path = 'readgroupsets/align'
1215
- command = make_simple_command(:post, path, options)
1216
- command.request_representation = Google::Apis::GenomicsV1beta2::AlignReadGroupSetsRequest::Representation
1217
- command.request_object = align_read_group_sets_request_object
1218
- command.response_representation = Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse::Representation
1219
- command.response_class = Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse
1220
- command.query['fields'] = fields unless fields.nil?
1221
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1222
- command.query['userIp'] = user_ip unless user_ip.nil?
1223
- execute_or_queue_command(command, &block)
1224
- end
1225
-
1226
- # Calls variants on read data from existing read group sets or files from Google
1227
- # Cloud Storage. See the alignment and variant calling documentation for more
1228
- # details.
1229
- # @param [Google::Apis::GenomicsV1beta2::CallReadGroupSetsRequest] call_read_group_sets_request_object
1230
- # @param [String] fields
1231
- # Selector specifying which fields to include in a partial response.
1232
- # @param [String] quota_user
1233
- # Available to use for quota purposes for server-side applications. Can be any
1234
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1235
- # Overrides userIp if both are provided.
1236
- # @param [String] user_ip
1237
- # IP address of the site where the request originates. Use this if you want to
1238
- # enforce per-user limits.
1239
- # @param [Google::Apis::RequestOptions] options
1240
- # Request-specific options
1241
- #
1242
- # @yield [result, err] Result & error if block supplied
1243
- # @yieldparam result [Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse] parsed result object
1244
- # @yieldparam err [StandardError] error object if request failed
1245
- #
1246
- # @return [Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse]
1247
- #
1248
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1249
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1250
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1251
- def call_read_group_sets(call_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1252
- path = 'readgroupsets/call'
1253
- command = make_simple_command(:post, path, options)
1254
- command.request_representation = Google::Apis::GenomicsV1beta2::CallReadGroupSetsRequest::Representation
1255
- command.request_object = call_read_group_sets_request_object
1256
- command.response_representation = Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse::Representation
1257
- command.response_class = Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse
1258
- command.query['fields'] = fields unless fields.nil?
1259
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1260
- command.query['userIp'] = user_ip unless user_ip.nil?
1261
- execute_or_queue_command(command, &block)
1262
- end
1263
-
1264
- # Deletes a read group set.
1265
- # @param [String] read_group_set_id
1266
- # The ID of the read group set to be deleted. The caller must have WRITE
1267
- # permissions to the dataset associated with this read group set.
1268
- # @param [String] fields
1269
- # Selector specifying which fields to include in a partial response.
1270
- # @param [String] quota_user
1271
- # Available to use for quota purposes for server-side applications. Can be any
1272
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1273
- # Overrides userIp if both are provided.
1274
- # @param [String] user_ip
1275
- # IP address of the site where the request originates. Use this if you want to
1276
- # enforce per-user limits.
1277
- # @param [Google::Apis::RequestOptions] options
1278
- # Request-specific options
1279
- #
1280
- # @yield [result, err] Result & error if block supplied
1281
- # @yieldparam result [NilClass] No result returned for this method
1282
- # @yieldparam err [StandardError] error object if request failed
1283
- #
1284
- # @return [void]
1285
- #
1286
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1287
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1288
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1289
- def delete_read_group_set(read_group_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1290
- path = 'readgroupsets/{readGroupSetId}'
1291
- command = make_simple_command(:delete, path, options)
1292
- command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
1293
- command.query['fields'] = fields unless fields.nil?
1294
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1295
- command.query['userIp'] = user_ip unless user_ip.nil?
1296
- execute_or_queue_command(command, &block)
1297
- end
1298
-
1299
- # Exports read group sets to a BAM file in Google Cloud Storage.
1300
- # Note that currently there may be some differences between exported BAM files
1301
- # and the original BAM file at the time of import. In particular, comments in
1302
- # the input file header will not be preserved, some custom tags will be
1303
- # converted to strings, and original reference sequence order is not necessarily
1304
- # preserved.
1305
- # @param [Google::Apis::GenomicsV1beta2::ExportReadGroupSetsRequest] export_read_group_sets_request_object
1306
- # @param [String] fields
1307
- # Selector specifying which fields to include in a partial response.
1308
- # @param [String] quota_user
1309
- # Available to use for quota purposes for server-side applications. Can be any
1310
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1311
- # Overrides userIp if both are provided.
1312
- # @param [String] user_ip
1313
- # IP address of the site where the request originates. Use this if you want to
1314
- # enforce per-user limits.
1315
- # @param [Google::Apis::RequestOptions] options
1316
- # Request-specific options
1317
- #
1318
- # @yield [result, err] Result & error if block supplied
1319
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse] parsed result object
1320
- # @yieldparam err [StandardError] error object if request failed
1321
- #
1322
- # @return [Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse]
1323
- #
1324
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1325
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1326
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1327
- def export_read_group_sets(export_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1328
- path = 'readgroupsets/export'
1329
- command = make_simple_command(:post, path, options)
1330
- command.request_representation = Google::Apis::GenomicsV1beta2::ExportReadGroupSetsRequest::Representation
1331
- command.request_object = export_read_group_sets_request_object
1332
- command.response_representation = Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse::Representation
1333
- command.response_class = Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse
1334
- command.query['fields'] = fields unless fields.nil?
1335
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1336
- command.query['userIp'] = user_ip unless user_ip.nil?
1337
- execute_or_queue_command(command, &block)
1338
- end
1339
-
1340
- # Gets a read group set by ID.
1341
- # @param [String] read_group_set_id
1342
- # The ID of the read group set.
1343
- # @param [String] fields
1344
- # Selector specifying which fields to include in a partial response.
1345
- # @param [String] quota_user
1346
- # Available to use for quota purposes for server-side applications. Can be any
1347
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1348
- # Overrides userIp if both are provided.
1349
- # @param [String] user_ip
1350
- # IP address of the site where the request originates. Use this if you want to
1351
- # enforce per-user limits.
1352
- # @param [Google::Apis::RequestOptions] options
1353
- # Request-specific options
1354
- #
1355
- # @yield [result, err] Result & error if block supplied
1356
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ReadGroupSet] parsed result object
1357
- # @yieldparam err [StandardError] error object if request failed
1358
- #
1359
- # @return [Google::Apis::GenomicsV1beta2::ReadGroupSet]
1360
- #
1361
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1362
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1363
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1364
- def get_read_group_set(read_group_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1365
- path = 'readgroupsets/{readGroupSetId}'
1366
- command = make_simple_command(:get, path, options)
1367
- command.response_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
1368
- command.response_class = Google::Apis::GenomicsV1beta2::ReadGroupSet
1369
- command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
1370
- command.query['fields'] = fields unless fields.nil?
1371
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1372
- command.query['userIp'] = user_ip unless user_ip.nil?
1373
- execute_or_queue_command(command, &block)
1374
- end
1375
-
1376
- # Creates read group sets by asynchronously importing the provided information.
1377
- # Note that currently comments in the input file header are not imported and
1378
- # some custom tags will be converted to strings, rather than preserving tag
1379
- # types. The caller must have WRITE permissions to the dataset.
1380
- # @param [Google::Apis::GenomicsV1beta2::ImportReadGroupSetsRequest] import_read_group_sets_request_object
1381
- # @param [String] fields
1382
- # Selector specifying which fields to include in a partial response.
1383
- # @param [String] quota_user
1384
- # Available to use for quota purposes for server-side applications. Can be any
1385
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1386
- # Overrides userIp if both are provided.
1387
- # @param [String] user_ip
1388
- # IP address of the site where the request originates. Use this if you want to
1389
- # enforce per-user limits.
1390
- # @param [Google::Apis::RequestOptions] options
1391
- # Request-specific options
1392
- #
1393
- # @yield [result, err] Result & error if block supplied
1394
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse] parsed result object
1395
- # @yieldparam err [StandardError] error object if request failed
1396
- #
1397
- # @return [Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse]
1398
- #
1399
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1400
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1401
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1402
- def import_read_group_sets(import_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1403
- path = 'readgroupsets/import'
1404
- command = make_simple_command(:post, path, options)
1405
- command.request_representation = Google::Apis::GenomicsV1beta2::ImportReadGroupSetsRequest::Representation
1406
- command.request_object = import_read_group_sets_request_object
1407
- command.response_representation = Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse::Representation
1408
- command.response_class = Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse
1409
- command.query['fields'] = fields unless fields.nil?
1410
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1411
- command.query['userIp'] = user_ip unless user_ip.nil?
1412
- execute_or_queue_command(command, &block)
1413
- end
1414
-
1415
- # Updates a read group set. This method supports patch semantics.
1416
- # @param [String] read_group_set_id
1417
- # The ID of the read group set to be updated. The caller must have WRITE
1418
- # permissions to the dataset associated with this read group set.
1419
- # @param [Google::Apis::GenomicsV1beta2::ReadGroupSet] read_group_set_object
1420
- # @param [String] fields
1421
- # Selector specifying which fields to include in a partial response.
1422
- # @param [String] quota_user
1423
- # Available to use for quota purposes for server-side applications. Can be any
1424
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1425
- # Overrides userIp if both are provided.
1426
- # @param [String] user_ip
1427
- # IP address of the site where the request originates. Use this if you want to
1428
- # enforce per-user limits.
1429
- # @param [Google::Apis::RequestOptions] options
1430
- # Request-specific options
1431
- #
1432
- # @yield [result, err] Result & error if block supplied
1433
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ReadGroupSet] parsed result object
1434
- # @yieldparam err [StandardError] error object if request failed
1435
- #
1436
- # @return [Google::Apis::GenomicsV1beta2::ReadGroupSet]
1437
- #
1438
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1439
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1440
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1441
- def patch_read_group_set(read_group_set_id, read_group_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1442
- path = 'readgroupsets/{readGroupSetId}'
1443
- command = make_simple_command(:patch, path, options)
1444
- command.request_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
1445
- command.request_object = read_group_set_object
1446
- command.response_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
1447
- command.response_class = Google::Apis::GenomicsV1beta2::ReadGroupSet
1448
- command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
1449
- command.query['fields'] = fields unless fields.nil?
1450
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1451
- command.query['userIp'] = user_ip unless user_ip.nil?
1452
- execute_or_queue_command(command, &block)
1453
- end
1454
-
1455
- # Searches for read group sets matching the criteria.
1456
- # Implements GlobalAllianceApi.searchReadGroupSets.
1457
- # @param [Google::Apis::GenomicsV1beta2::SearchReadGroupSetsRequest] search_read_group_sets_request_object
1458
- # @param [String] fields
1459
- # Selector specifying which fields to include in a partial response.
1460
- # @param [String] quota_user
1461
- # Available to use for quota purposes for server-side applications. Can be any
1462
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1463
- # Overrides userIp if both are provided.
1464
- # @param [String] user_ip
1465
- # IP address of the site where the request originates. Use this if you want to
1466
- # enforce per-user limits.
1467
- # @param [Google::Apis::RequestOptions] options
1468
- # Request-specific options
1469
- #
1470
- # @yield [result, err] Result & error if block supplied
1471
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse] parsed result object
1472
- # @yieldparam err [StandardError] error object if request failed
1473
- #
1474
- # @return [Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse]
1475
- #
1476
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1477
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1478
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1479
- def search_read_group_sets(search_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1480
- path = 'readgroupsets/search'
1481
- command = make_simple_command(:post, path, options)
1482
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchReadGroupSetsRequest::Representation
1483
- command.request_object = search_read_group_sets_request_object
1484
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse::Representation
1485
- command.response_class = Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse
1486
- command.query['fields'] = fields unless fields.nil?
1487
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1488
- command.query['userIp'] = user_ip unless user_ip.nil?
1489
- execute_or_queue_command(command, &block)
1490
- end
1491
-
1492
- # Updates a read group set.
1493
- # @param [String] read_group_set_id
1494
- # The ID of the read group set to be updated. The caller must have WRITE
1495
- # permissions to the dataset associated with this read group set.
1496
- # @param [Google::Apis::GenomicsV1beta2::ReadGroupSet] read_group_set_object
1497
- # @param [String] fields
1498
- # Selector specifying which fields to include in a partial response.
1499
- # @param [String] quota_user
1500
- # Available to use for quota purposes for server-side applications. Can be any
1501
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1502
- # Overrides userIp if both are provided.
1503
- # @param [String] user_ip
1504
- # IP address of the site where the request originates. Use this if you want to
1505
- # enforce per-user limits.
1506
- # @param [Google::Apis::RequestOptions] options
1507
- # Request-specific options
1508
- #
1509
- # @yield [result, err] Result & error if block supplied
1510
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ReadGroupSet] parsed result object
1511
- # @yieldparam err [StandardError] error object if request failed
1512
- #
1513
- # @return [Google::Apis::GenomicsV1beta2::ReadGroupSet]
1514
- #
1515
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1516
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1517
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1518
- def update_read_group_set(read_group_set_id, read_group_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1519
- path = 'readgroupsets/{readGroupSetId}'
1520
- command = make_simple_command(:put, path, options)
1521
- command.request_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
1522
- command.request_object = read_group_set_object
1523
- command.response_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
1524
- command.response_class = Google::Apis::GenomicsV1beta2::ReadGroupSet
1525
- command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
1526
- command.query['fields'] = fields unless fields.nil?
1527
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1528
- command.query['userIp'] = user_ip unless user_ip.nil?
1529
- execute_or_queue_command(command, &block)
1530
- end
1531
-
1532
- # Lists fixed width coverage buckets for a read group set, each of which
1533
- # correspond to a range of a reference sequence. Each bucket summarizes coverage
1534
- # information across its corresponding genomic range.
1535
- # Coverage is defined as the number of reads which are aligned to a given base
1536
- # in the reference sequence. Coverage buckets are available at several
1537
- # precomputed bucket widths, enabling retrieval of various coverage 'zoom levels'
1538
- # . The caller must have READ permissions for the target read group set.
1539
- # @param [String] read_group_set_id
1540
- # Required. The ID of the read group set over which coverage is requested.
1541
- # @param [Fixnum] page_size
1542
- # The maximum number of results to return in a single page. If unspecified,
1543
- # defaults to 1024. The maximum value is 2048.
1544
- # @param [String] page_token
1545
- # The continuation token, which is used to page through large result sets. To
1546
- # get the next page of results, set this parameter to the value of nextPageToken
1547
- # from the previous response.
1548
- # @param [String] range_end
1549
- # The end position of the range on the reference, 0-based exclusive. If
1550
- # specified, referenceName must also be specified.
1551
- # @param [String] range_reference_name
1552
- # The reference sequence name, for example chr1, 1, or chrX.
1553
- # @param [String] range_start
1554
- # The start position of the range on the reference, 0-based inclusive. If
1555
- # specified, referenceName must also be specified.
1556
- # @param [String] target_bucket_width
1557
- # The desired width of each reported coverage bucket in base pairs. This will be
1558
- # rounded down to the nearest precomputed bucket width; the value of which is
1559
- # returned as bucketWidth in the response. Defaults to infinity (each bucket
1560
- # spans an entire reference sequence) or the length of the target range, if
1561
- # specified. The smallest precomputed bucketWidth is currently 2048 base pairs;
1562
- # this is subject to change.
1563
- # @param [String] fields
1564
- # Selector specifying which fields to include in a partial response.
1565
- # @param [String] quota_user
1566
- # Available to use for quota purposes for server-side applications. Can be any
1567
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1568
- # Overrides userIp if both are provided.
1569
- # @param [String] user_ip
1570
- # IP address of the site where the request originates. Use this if you want to
1571
- # enforce per-user limits.
1572
- # @param [Google::Apis::RequestOptions] options
1573
- # Request-specific options
1574
- #
1575
- # @yield [result, err] Result & error if block supplied
1576
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse] parsed result object
1577
- # @yieldparam err [StandardError] error object if request failed
1578
- #
1579
- # @return [Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse]
1580
- #
1581
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1582
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1583
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1584
- def list_coverage_buckets(read_group_set_id, page_size: nil, page_token: nil, range_end: nil, range_reference_name: nil, range_start: nil, target_bucket_width: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1585
- path = 'readgroupsets/{readGroupSetId}/coveragebuckets'
1586
- command = make_simple_command(:get, path, options)
1587
- command.response_representation = Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse::Representation
1588
- command.response_class = Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse
1589
- command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
1590
- command.query['pageSize'] = page_size unless page_size.nil?
1591
- command.query['pageToken'] = page_token unless page_token.nil?
1592
- command.query['range.end'] = range_end unless range_end.nil?
1593
- command.query['range.referenceName'] = range_reference_name unless range_reference_name.nil?
1594
- command.query['range.start'] = range_start unless range_start.nil?
1595
- command.query['targetBucketWidth'] = target_bucket_width unless target_bucket_width.nil?
1596
- command.query['fields'] = fields unless fields.nil?
1597
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1598
- command.query['userIp'] = user_ip unless user_ip.nil?
1599
- execute_or_queue_command(command, &block)
1600
- end
1601
-
1602
- # Gets a list of reads for one or more read group sets. Reads search operates
1603
- # over a genomic coordinate space of reference sequence & position defined over
1604
- # the reference sequences to which the requested read group sets are aligned.
1605
- # If a target positional range is specified, search returns all reads whose
1606
- # alignment to the reference genome overlap the range. A query which specifies
1607
- # only read group set IDs yields all reads in those read group sets, including
1608
- # unmapped reads.
1609
- # All reads returned (including reads on subsequent pages) are ordered by
1610
- # genomic coordinate (reference sequence & position). Reads with equivalent
1611
- # genomic coordinates are returned in a deterministic order.
1612
- # Implements GlobalAllianceApi.searchReads.
1613
- # @param [Google::Apis::GenomicsV1beta2::SearchReadsRequest] search_reads_request_object
1614
- # @param [String] fields
1615
- # Selector specifying which fields to include in a partial response.
1616
- # @param [String] quota_user
1617
- # Available to use for quota purposes for server-side applications. Can be any
1618
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1619
- # Overrides userIp if both are provided.
1620
- # @param [String] user_ip
1621
- # IP address of the site where the request originates. Use this if you want to
1622
- # enforce per-user limits.
1623
- # @param [Google::Apis::RequestOptions] options
1624
- # Request-specific options
1625
- #
1626
- # @yield [result, err] Result & error if block supplied
1627
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReadsResponse] parsed result object
1628
- # @yieldparam err [StandardError] error object if request failed
1629
- #
1630
- # @return [Google::Apis::GenomicsV1beta2::SearchReadsResponse]
1631
- #
1632
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1633
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1634
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1635
- def search_reads(search_reads_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1636
- path = 'reads/search'
1637
- command = make_simple_command(:post, path, options)
1638
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchReadsRequest::Representation
1639
- command.request_object = search_reads_request_object
1640
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchReadsResponse::Representation
1641
- command.response_class = Google::Apis::GenomicsV1beta2::SearchReadsResponse
1642
- command.query['fields'] = fields unless fields.nil?
1643
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1644
- command.query['userIp'] = user_ip unless user_ip.nil?
1645
- execute_or_queue_command(command, &block)
1646
- end
1647
-
1648
- # Gets a reference.
1649
- # Implements GlobalAllianceApi.getReference.
1650
- # @param [String] reference_id
1651
- # The ID of the reference.
1652
- # @param [String] fields
1653
- # Selector specifying which fields to include in a partial response.
1654
- # @param [String] quota_user
1655
- # Available to use for quota purposes for server-side applications. Can be any
1656
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1657
- # Overrides userIp if both are provided.
1658
- # @param [String] user_ip
1659
- # IP address of the site where the request originates. Use this if you want to
1660
- # enforce per-user limits.
1661
- # @param [Google::Apis::RequestOptions] options
1662
- # Request-specific options
1663
- #
1664
- # @yield [result, err] Result & error if block supplied
1665
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Reference] parsed result object
1666
- # @yieldparam err [StandardError] error object if request failed
1667
- #
1668
- # @return [Google::Apis::GenomicsV1beta2::Reference]
1669
- #
1670
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1671
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1672
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1673
- def get_reference(reference_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1674
- path = 'references/{referenceId}'
1675
- command = make_simple_command(:get, path, options)
1676
- command.response_representation = Google::Apis::GenomicsV1beta2::Reference::Representation
1677
- command.response_class = Google::Apis::GenomicsV1beta2::Reference
1678
- command.params['referenceId'] = reference_id unless reference_id.nil?
1679
- command.query['fields'] = fields unless fields.nil?
1680
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1681
- command.query['userIp'] = user_ip unless user_ip.nil?
1682
- execute_or_queue_command(command, &block)
1683
- end
1684
-
1685
- # Searches for references which match the given criteria.
1686
- # Implements GlobalAllianceApi.searchReferences.
1687
- # @param [Google::Apis::GenomicsV1beta2::SearchReferencesRequest] search_references_request_object
1688
- # @param [String] fields
1689
- # Selector specifying which fields to include in a partial response.
1690
- # @param [String] quota_user
1691
- # Available to use for quota purposes for server-side applications. Can be any
1692
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1693
- # Overrides userIp if both are provided.
1694
- # @param [String] user_ip
1695
- # IP address of the site where the request originates. Use this if you want to
1696
- # enforce per-user limits.
1697
- # @param [Google::Apis::RequestOptions] options
1698
- # Request-specific options
1699
- #
1700
- # @yield [result, err] Result & error if block supplied
1701
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReferencesResponse] parsed result object
1702
- # @yieldparam err [StandardError] error object if request failed
1703
- #
1704
- # @return [Google::Apis::GenomicsV1beta2::SearchReferencesResponse]
1705
- #
1706
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1707
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1708
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1709
- def search_references(search_references_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1710
- path = 'references/search'
1711
- command = make_simple_command(:post, path, options)
1712
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchReferencesRequest::Representation
1713
- command.request_object = search_references_request_object
1714
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchReferencesResponse::Representation
1715
- command.response_class = Google::Apis::GenomicsV1beta2::SearchReferencesResponse
1716
- command.query['fields'] = fields unless fields.nil?
1717
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1718
- command.query['userIp'] = user_ip unless user_ip.nil?
1719
- execute_or_queue_command(command, &block)
1720
- end
1721
-
1722
- # Lists the bases in a reference, optionally restricted to a range.
1723
- # Implements GlobalAllianceApi.getReferenceBases.
1724
- # @param [String] reference_id
1725
- # The ID of the reference.
1726
- # @param [String] end_position
1727
- # The end position (0-based, exclusive) of this query. Defaults to the length of
1728
- # this reference.
1729
- # @param [Fixnum] page_size
1730
- # Specifies the maximum number of bases to return in a single page.
1731
- # @param [String] page_token
1732
- # The continuation token, which is used to page through large result sets. To
1733
- # get the next page of results, set this parameter to the value of nextPageToken
1734
- # from the previous response.
1735
- # @param [String] start_position
1736
- # The start position (0-based) of this query. Defaults to 0.
1737
- # @param [String] fields
1738
- # Selector specifying which fields to include in a partial response.
1739
- # @param [String] quota_user
1740
- # Available to use for quota purposes for server-side applications. Can be any
1741
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1742
- # Overrides userIp if both are provided.
1743
- # @param [String] user_ip
1744
- # IP address of the site where the request originates. Use this if you want to
1745
- # enforce per-user limits.
1746
- # @param [Google::Apis::RequestOptions] options
1747
- # Request-specific options
1748
- #
1749
- # @yield [result, err] Result & error if block supplied
1750
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ListBasesResponse] parsed result object
1751
- # @yieldparam err [StandardError] error object if request failed
1752
- #
1753
- # @return [Google::Apis::GenomicsV1beta2::ListBasesResponse]
1754
- #
1755
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1756
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1757
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1758
- def list_reference_bases(reference_id, end_position: nil, page_size: nil, page_token: nil, start_position: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1759
- path = 'references/{referenceId}/bases'
1760
- command = make_simple_command(:get, path, options)
1761
- command.response_representation = Google::Apis::GenomicsV1beta2::ListBasesResponse::Representation
1762
- command.response_class = Google::Apis::GenomicsV1beta2::ListBasesResponse
1763
- command.params['referenceId'] = reference_id unless reference_id.nil?
1764
- command.query['end'] = end_position unless end_position.nil?
1765
- command.query['pageSize'] = page_size unless page_size.nil?
1766
- command.query['pageToken'] = page_token unless page_token.nil?
1767
- command.query['start'] = start_position unless start_position.nil?
1768
- command.query['fields'] = fields unless fields.nil?
1769
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1770
- command.query['userIp'] = user_ip unless user_ip.nil?
1771
- execute_or_queue_command(command, &block)
1772
- end
1773
-
1774
- # Gets a reference set.
1775
- # Implements GlobalAllianceApi.getReferenceSet.
1776
- # @param [String] reference_set_id
1777
- # The ID of the reference set.
1778
- # @param [String] fields
1779
- # Selector specifying which fields to include in a partial response.
1780
- # @param [String] quota_user
1781
- # Available to use for quota purposes for server-side applications. Can be any
1782
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1783
- # Overrides userIp if both are provided.
1784
- # @param [String] user_ip
1785
- # IP address of the site where the request originates. Use this if you want to
1786
- # enforce per-user limits.
1787
- # @param [Google::Apis::RequestOptions] options
1788
- # Request-specific options
1789
- #
1790
- # @yield [result, err] Result & error if block supplied
1791
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ReferenceSet] parsed result object
1792
- # @yieldparam err [StandardError] error object if request failed
1793
- #
1794
- # @return [Google::Apis::GenomicsV1beta2::ReferenceSet]
1795
- #
1796
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1797
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1798
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1799
- def get_reference_set(reference_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1800
- path = 'referencesets/{referenceSetId}'
1801
- command = make_simple_command(:get, path, options)
1802
- command.response_representation = Google::Apis::GenomicsV1beta2::ReferenceSet::Representation
1803
- command.response_class = Google::Apis::GenomicsV1beta2::ReferenceSet
1804
- command.params['referenceSetId'] = reference_set_id unless reference_set_id.nil?
1805
- command.query['fields'] = fields unless fields.nil?
1806
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1807
- command.query['userIp'] = user_ip unless user_ip.nil?
1808
- execute_or_queue_command(command, &block)
1809
- end
1810
-
1811
- # Searches for reference sets which match the given criteria.
1812
- # Implements GlobalAllianceApi.searchReferenceSets.
1813
- # @param [Google::Apis::GenomicsV1beta2::SearchReferenceSetsRequest] search_reference_sets_request_object
1814
- # @param [String] fields
1815
- # Selector specifying which fields to include in a partial response.
1816
- # @param [String] quota_user
1817
- # Available to use for quota purposes for server-side applications. Can be any
1818
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1819
- # Overrides userIp if both are provided.
1820
- # @param [String] user_ip
1821
- # IP address of the site where the request originates. Use this if you want to
1822
- # enforce per-user limits.
1823
- # @param [Google::Apis::RequestOptions] options
1824
- # Request-specific options
1825
- #
1826
- # @yield [result, err] Result & error if block supplied
1827
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse] parsed result object
1828
- # @yieldparam err [StandardError] error object if request failed
1829
- #
1830
- # @return [Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse]
1831
- #
1832
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1833
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1834
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1835
- def search_reference_sets(search_reference_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1836
- path = 'referencesets/search'
1837
- command = make_simple_command(:post, path, options)
1838
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchReferenceSetsRequest::Representation
1839
- command.request_object = search_reference_sets_request_object
1840
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse::Representation
1841
- command.response_class = Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse
1842
- command.query['fields'] = fields unless fields.nil?
1843
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1844
- command.query['userIp'] = user_ip unless user_ip.nil?
1845
- execute_or_queue_command(command, &block)
1846
- end
1847
-
1848
- # Creates a new variant.
1849
- # @param [Google::Apis::GenomicsV1beta2::Variant] variant_object
1850
- # @param [String] fields
1851
- # Selector specifying which fields to include in a partial response.
1852
- # @param [String] quota_user
1853
- # Available to use for quota purposes for server-side applications. Can be any
1854
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1855
- # Overrides userIp if both are provided.
1856
- # @param [String] user_ip
1857
- # IP address of the site where the request originates. Use this if you want to
1858
- # enforce per-user limits.
1859
- # @param [Google::Apis::RequestOptions] options
1860
- # Request-specific options
1861
- #
1862
- # @yield [result, err] Result & error if block supplied
1863
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Variant] parsed result object
1864
- # @yieldparam err [StandardError] error object if request failed
1865
- #
1866
- # @return [Google::Apis::GenomicsV1beta2::Variant]
1867
- #
1868
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1869
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1870
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1871
- def create_variant(variant_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1872
- path = 'variants'
1873
- command = make_simple_command(:post, path, options)
1874
- command.request_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
1875
- command.request_object = variant_object
1876
- command.response_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
1877
- command.response_class = Google::Apis::GenomicsV1beta2::Variant
1878
- command.query['fields'] = fields unless fields.nil?
1879
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1880
- command.query['userIp'] = user_ip unless user_ip.nil?
1881
- execute_or_queue_command(command, &block)
1882
- end
1883
-
1884
- # Deletes a variant.
1885
- # @param [String] variant_id
1886
- # The ID of the variant to be deleted.
1887
- # @param [String] fields
1888
- # Selector specifying which fields to include in a partial response.
1889
- # @param [String] quota_user
1890
- # Available to use for quota purposes for server-side applications. Can be any
1891
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1892
- # Overrides userIp if both are provided.
1893
- # @param [String] user_ip
1894
- # IP address of the site where the request originates. Use this if you want to
1895
- # enforce per-user limits.
1896
- # @param [Google::Apis::RequestOptions] options
1897
- # Request-specific options
1898
- #
1899
- # @yield [result, err] Result & error if block supplied
1900
- # @yieldparam result [NilClass] No result returned for this method
1901
- # @yieldparam err [StandardError] error object if request failed
1902
- #
1903
- # @return [void]
1904
- #
1905
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1906
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1907
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1908
- def delete_variant(variant_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1909
- path = 'variants/{variantId}'
1910
- command = make_simple_command(:delete, path, options)
1911
- command.params['variantId'] = variant_id unless variant_id.nil?
1912
- command.query['fields'] = fields unless fields.nil?
1913
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1914
- command.query['userIp'] = user_ip unless user_ip.nil?
1915
- execute_or_queue_command(command, &block)
1916
- end
1917
-
1918
- # Gets a variant by ID.
1919
- # @param [String] variant_id
1920
- # The ID of the variant.
1921
- # @param [String] fields
1922
- # Selector specifying which fields to include in a partial response.
1923
- # @param [String] quota_user
1924
- # Available to use for quota purposes for server-side applications. Can be any
1925
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1926
- # Overrides userIp if both are provided.
1927
- # @param [String] user_ip
1928
- # IP address of the site where the request originates. Use this if you want to
1929
- # enforce per-user limits.
1930
- # @param [Google::Apis::RequestOptions] options
1931
- # Request-specific options
1932
- #
1933
- # @yield [result, err] Result & error if block supplied
1934
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Variant] parsed result object
1935
- # @yieldparam err [StandardError] error object if request failed
1936
- #
1937
- # @return [Google::Apis::GenomicsV1beta2::Variant]
1938
- #
1939
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1940
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1941
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1942
- def get_variant(variant_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1943
- path = 'variants/{variantId}'
1944
- command = make_simple_command(:get, path, options)
1945
- command.response_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
1946
- command.response_class = Google::Apis::GenomicsV1beta2::Variant
1947
- command.params['variantId'] = variant_id unless variant_id.nil?
1948
- command.query['fields'] = fields unless fields.nil?
1949
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1950
- command.query['userIp'] = user_ip unless user_ip.nil?
1951
- execute_or_queue_command(command, &block)
1952
- end
1953
-
1954
- # Gets a list of variants matching the criteria.
1955
- # Implements GlobalAllianceApi.searchVariants.
1956
- # @param [Google::Apis::GenomicsV1beta2::SearchVariantsRequest] search_variants_request_object
1957
- # @param [String] fields
1958
- # Selector specifying which fields to include in a partial response.
1959
- # @param [String] quota_user
1960
- # Available to use for quota purposes for server-side applications. Can be any
1961
- # arbitrary string assigned to a user, but should not exceed 40 characters.
1962
- # Overrides userIp if both are provided.
1963
- # @param [String] user_ip
1964
- # IP address of the site where the request originates. Use this if you want to
1965
- # enforce per-user limits.
1966
- # @param [Google::Apis::RequestOptions] options
1967
- # Request-specific options
1968
- #
1969
- # @yield [result, err] Result & error if block supplied
1970
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchVariantsResponse] parsed result object
1971
- # @yieldparam err [StandardError] error object if request failed
1972
- #
1973
- # @return [Google::Apis::GenomicsV1beta2::SearchVariantsResponse]
1974
- #
1975
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1976
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1977
- # @raise [Google::Apis::AuthorizationError] Authorization is required
1978
- def search_variants(search_variants_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
1979
- path = 'variants/search'
1980
- command = make_simple_command(:post, path, options)
1981
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchVariantsRequest::Representation
1982
- command.request_object = search_variants_request_object
1983
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchVariantsResponse::Representation
1984
- command.response_class = Google::Apis::GenomicsV1beta2::SearchVariantsResponse
1985
- command.query['fields'] = fields unless fields.nil?
1986
- command.query['quotaUser'] = quota_user unless quota_user.nil?
1987
- command.query['userIp'] = user_ip unless user_ip.nil?
1988
- execute_or_queue_command(command, &block)
1989
- end
1990
-
1991
- # Updates a variant's names and info fields. All other modifications are
1992
- # silently ignored. Returns the modified variant without its calls.
1993
- # @param [String] variant_id
1994
- # The ID of the variant to be updated.
1995
- # @param [Google::Apis::GenomicsV1beta2::Variant] variant_object
1996
- # @param [String] fields
1997
- # Selector specifying which fields to include in a partial response.
1998
- # @param [String] quota_user
1999
- # Available to use for quota purposes for server-side applications. Can be any
2000
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2001
- # Overrides userIp if both are provided.
2002
- # @param [String] user_ip
2003
- # IP address of the site where the request originates. Use this if you want to
2004
- # enforce per-user limits.
2005
- # @param [Google::Apis::RequestOptions] options
2006
- # Request-specific options
2007
- #
2008
- # @yield [result, err] Result & error if block supplied
2009
- # @yieldparam result [Google::Apis::GenomicsV1beta2::Variant] parsed result object
2010
- # @yieldparam err [StandardError] error object if request failed
2011
- #
2012
- # @return [Google::Apis::GenomicsV1beta2::Variant]
2013
- #
2014
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2015
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2016
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2017
- def update_variant(variant_id, variant_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2018
- path = 'variants/{variantId}'
2019
- command = make_simple_command(:put, path, options)
2020
- command.request_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
2021
- command.request_object = variant_object
2022
- command.response_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
2023
- command.response_class = Google::Apis::GenomicsV1beta2::Variant
2024
- command.params['variantId'] = variant_id unless variant_id.nil?
2025
- command.query['fields'] = fields unless fields.nil?
2026
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2027
- command.query['userIp'] = user_ip unless user_ip.nil?
2028
- execute_or_queue_command(command, &block)
2029
- end
2030
-
2031
- # Creates a new variant set (only necessary in v1).
2032
- # @param [Google::Apis::GenomicsV1beta2::VariantSet] variant_set_object
2033
- # @param [String] fields
2034
- # Selector specifying which fields to include in a partial response.
2035
- # @param [String] quota_user
2036
- # Available to use for quota purposes for server-side applications. Can be any
2037
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2038
- # Overrides userIp if both are provided.
2039
- # @param [String] user_ip
2040
- # IP address of the site where the request originates. Use this if you want to
2041
- # enforce per-user limits.
2042
- # @param [Google::Apis::RequestOptions] options
2043
- # Request-specific options
2044
- #
2045
- # @yield [result, err] Result & error if block supplied
2046
- # @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
2047
- # @yieldparam err [StandardError] error object if request failed
2048
- #
2049
- # @return [Google::Apis::GenomicsV1beta2::VariantSet]
2050
- #
2051
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2052
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2053
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2054
- def create_variantset(variant_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2055
- path = 'variantsets'
2056
- command = make_simple_command(:post, path, options)
2057
- command.request_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
2058
- command.request_object = variant_set_object
2059
- command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
2060
- command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
2061
- command.query['fields'] = fields unless fields.nil?
2062
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2063
- command.query['userIp'] = user_ip unless user_ip.nil?
2064
- execute_or_queue_command(command, &block)
2065
- end
2066
-
2067
- # Deletes the contents of a variant set. The variant set object is not deleted.
2068
- # @param [String] variant_set_id
2069
- # The ID of the variant set to be deleted.
2070
- # @param [String] fields
2071
- # Selector specifying which fields to include in a partial response.
2072
- # @param [String] quota_user
2073
- # Available to use for quota purposes for server-side applications. Can be any
2074
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2075
- # Overrides userIp if both are provided.
2076
- # @param [String] user_ip
2077
- # IP address of the site where the request originates. Use this if you want to
2078
- # enforce per-user limits.
2079
- # @param [Google::Apis::RequestOptions] options
2080
- # Request-specific options
2081
- #
2082
- # @yield [result, err] Result & error if block supplied
2083
- # @yieldparam result [NilClass] No result returned for this method
2084
- # @yieldparam err [StandardError] error object if request failed
2085
- #
2086
- # @return [void]
2087
- #
2088
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2089
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2090
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2091
- def delete_variantset(variant_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2092
- path = 'variantsets/{variantSetId}'
2093
- command = make_simple_command(:delete, path, options)
2094
- command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
2095
- command.query['fields'] = fields unless fields.nil?
2096
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2097
- command.query['userIp'] = user_ip unless user_ip.nil?
2098
- execute_or_queue_command(command, &block)
2099
- end
2100
-
2101
- # Exports variant set data to an external destination.
2102
- # @param [String] variant_set_id
2103
- # Required. The ID of the variant set that contains variant data which should be
2104
- # exported. The caller must have READ access to this variant set.
2105
- # @param [Google::Apis::GenomicsV1beta2::ExportVariantSetRequest] export_variant_set_request_object
2106
- # @param [String] fields
2107
- # Selector specifying which fields to include in a partial response.
2108
- # @param [String] quota_user
2109
- # Available to use for quota purposes for server-side applications. Can be any
2110
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2111
- # Overrides userIp if both are provided.
2112
- # @param [String] user_ip
2113
- # IP address of the site where the request originates. Use this if you want to
2114
- # enforce per-user limits.
2115
- # @param [Google::Apis::RequestOptions] options
2116
- # Request-specific options
2117
- #
2118
- # @yield [result, err] Result & error if block supplied
2119
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ExportVariantSetResponse] parsed result object
2120
- # @yieldparam err [StandardError] error object if request failed
2121
- #
2122
- # @return [Google::Apis::GenomicsV1beta2::ExportVariantSetResponse]
2123
- #
2124
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2125
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2126
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2127
- def export_variant_set(variant_set_id, export_variant_set_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2128
- path = 'variantsets/{variantSetId}/export'
2129
- command = make_simple_command(:post, path, options)
2130
- command.request_representation = Google::Apis::GenomicsV1beta2::ExportVariantSetRequest::Representation
2131
- command.request_object = export_variant_set_request_object
2132
- command.response_representation = Google::Apis::GenomicsV1beta2::ExportVariantSetResponse::Representation
2133
- command.response_class = Google::Apis::GenomicsV1beta2::ExportVariantSetResponse
2134
- command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
2135
- command.query['fields'] = fields unless fields.nil?
2136
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2137
- command.query['userIp'] = user_ip unless user_ip.nil?
2138
- execute_or_queue_command(command, &block)
2139
- end
2140
-
2141
- # Gets a variant set by ID.
2142
- # @param [String] variant_set_id
2143
- # Required. The ID of the variant set.
2144
- # @param [String] fields
2145
- # Selector specifying which fields to include in a partial response.
2146
- # @param [String] quota_user
2147
- # Available to use for quota purposes for server-side applications. Can be any
2148
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2149
- # Overrides userIp if both are provided.
2150
- # @param [String] user_ip
2151
- # IP address of the site where the request originates. Use this if you want to
2152
- # enforce per-user limits.
2153
- # @param [Google::Apis::RequestOptions] options
2154
- # Request-specific options
2155
- #
2156
- # @yield [result, err] Result & error if block supplied
2157
- # @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
2158
- # @yieldparam err [StandardError] error object if request failed
2159
- #
2160
- # @return [Google::Apis::GenomicsV1beta2::VariantSet]
2161
- #
2162
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2163
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2164
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2165
- def get_variantset(variant_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2166
- path = 'variantsets/{variantSetId}'
2167
- command = make_simple_command(:get, path, options)
2168
- command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
2169
- command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
2170
- command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
2171
- command.query['fields'] = fields unless fields.nil?
2172
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2173
- command.query['userIp'] = user_ip unless user_ip.nil?
2174
- execute_or_queue_command(command, &block)
2175
- end
2176
-
2177
- # Creates variant data by asynchronously importing the provided information.
2178
- # The variants for import will be merged with any existing data and each other
2179
- # according to the behavior of mergeVariants. In particular, this means for
2180
- # merged VCF variants that have conflicting INFO fields, some data will be
2181
- # arbitrarily discarded. As a special case, for single-sample VCF files, QUAL
2182
- # and FILTER fields will be moved to the call level; these are sometimes
2183
- # interpreted in a call-specific context. Imported VCF headers are appended to
2184
- # the metadata already in a variant set.
2185
- # @param [String] variant_set_id
2186
- # Required. The variant set to which variant data should be imported.
2187
- # @param [Google::Apis::GenomicsV1beta2::ImportVariantsRequest] import_variants_request_object
2188
- # @param [String] fields
2189
- # Selector specifying which fields to include in a partial response.
2190
- # @param [String] quota_user
2191
- # Available to use for quota purposes for server-side applications. Can be any
2192
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2193
- # Overrides userIp if both are provided.
2194
- # @param [String] user_ip
2195
- # IP address of the site where the request originates. Use this if you want to
2196
- # enforce per-user limits.
2197
- # @param [Google::Apis::RequestOptions] options
2198
- # Request-specific options
2199
- #
2200
- # @yield [result, err] Result & error if block supplied
2201
- # @yieldparam result [Google::Apis::GenomicsV1beta2::ImportVariantsResponse] parsed result object
2202
- # @yieldparam err [StandardError] error object if request failed
2203
- #
2204
- # @return [Google::Apis::GenomicsV1beta2::ImportVariantsResponse]
2205
- #
2206
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2207
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2208
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2209
- def import_variants(variant_set_id, import_variants_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2210
- path = 'variantsets/{variantSetId}/importVariants'
2211
- command = make_simple_command(:post, path, options)
2212
- command.request_representation = Google::Apis::GenomicsV1beta2::ImportVariantsRequest::Representation
2213
- command.request_object = import_variants_request_object
2214
- command.response_representation = Google::Apis::GenomicsV1beta2::ImportVariantsResponse::Representation
2215
- command.response_class = Google::Apis::GenomicsV1beta2::ImportVariantsResponse
2216
- command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
2217
- command.query['fields'] = fields unless fields.nil?
2218
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2219
- command.query['userIp'] = user_ip unless user_ip.nil?
2220
- execute_or_queue_command(command, &block)
2221
- end
2222
-
2223
- # Merges the given variants with existing variants. Each variant will be merged
2224
- # with an existing variant that matches its reference sequence, start, end,
2225
- # reference bases, and alternative bases. If no such variant exists, a new one
2226
- # will be created.
2227
- # When variants are merged, the call information from the new variant is added
2228
- # to the existing variant, and other fields (such as key/value pairs) are
2229
- # discarded.
2230
- # @param [String] variant_set_id
2231
- # The destination variant set.
2232
- # @param [Google::Apis::GenomicsV1beta2::MergeVariantsRequest] merge_variants_request_object
2233
- # @param [String] fields
2234
- # Selector specifying which fields to include in a partial response.
2235
- # @param [String] quota_user
2236
- # Available to use for quota purposes for server-side applications. Can be any
2237
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2238
- # Overrides userIp if both are provided.
2239
- # @param [String] user_ip
2240
- # IP address of the site where the request originates. Use this if you want to
2241
- # enforce per-user limits.
2242
- # @param [Google::Apis::RequestOptions] options
2243
- # Request-specific options
2244
- #
2245
- # @yield [result, err] Result & error if block supplied
2246
- # @yieldparam result [NilClass] No result returned for this method
2247
- # @yieldparam err [StandardError] error object if request failed
2248
- #
2249
- # @return [void]
2250
- #
2251
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2252
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2253
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2254
- def merge_variants(variant_set_id, merge_variants_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2255
- path = 'variantsets/{variantSetId}/mergeVariants'
2256
- command = make_simple_command(:post, path, options)
2257
- command.request_representation = Google::Apis::GenomicsV1beta2::MergeVariantsRequest::Representation
2258
- command.request_object = merge_variants_request_object
2259
- command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
2260
- command.query['fields'] = fields unless fields.nil?
2261
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2262
- command.query['userIp'] = user_ip unless user_ip.nil?
2263
- execute_or_queue_command(command, &block)
2264
- end
2265
-
2266
- # Updates a variant set's metadata. All other modifications are silently ignored.
2267
- # This method supports patch semantics.
2268
- # @param [String] variant_set_id
2269
- # The ID of the variant to be updated (must already exist).
2270
- # @param [Google::Apis::GenomicsV1beta2::VariantSet] variant_set_object
2271
- # @param [String] fields
2272
- # Selector specifying which fields to include in a partial response.
2273
- # @param [String] quota_user
2274
- # Available to use for quota purposes for server-side applications. Can be any
2275
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2276
- # Overrides userIp if both are provided.
2277
- # @param [String] user_ip
2278
- # IP address of the site where the request originates. Use this if you want to
2279
- # enforce per-user limits.
2280
- # @param [Google::Apis::RequestOptions] options
2281
- # Request-specific options
2282
- #
2283
- # @yield [result, err] Result & error if block supplied
2284
- # @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
2285
- # @yieldparam err [StandardError] error object if request failed
2286
- #
2287
- # @return [Google::Apis::GenomicsV1beta2::VariantSet]
2288
- #
2289
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2290
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2291
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2292
- def patch_variantset(variant_set_id, variant_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2293
- path = 'variantsets/{variantSetId}'
2294
- command = make_simple_command(:patch, path, options)
2295
- command.request_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
2296
- command.request_object = variant_set_object
2297
- command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
2298
- command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
2299
- command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
2300
- command.query['fields'] = fields unless fields.nil?
2301
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2302
- command.query['userIp'] = user_ip unless user_ip.nil?
2303
- execute_or_queue_command(command, &block)
2304
- end
2305
-
2306
- # Returns a list of all variant sets matching search criteria.
2307
- # Implements GlobalAllianceApi.searchVariantSets.
2308
- # @param [Google::Apis::GenomicsV1beta2::SearchVariantSetsRequest] search_variant_sets_request_object
2309
- # @param [String] fields
2310
- # Selector specifying which fields to include in a partial response.
2311
- # @param [String] quota_user
2312
- # Available to use for quota purposes for server-side applications. Can be any
2313
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2314
- # Overrides userIp if both are provided.
2315
- # @param [String] user_ip
2316
- # IP address of the site where the request originates. Use this if you want to
2317
- # enforce per-user limits.
2318
- # @param [Google::Apis::RequestOptions] options
2319
- # Request-specific options
2320
- #
2321
- # @yield [result, err] Result & error if block supplied
2322
- # @yieldparam result [Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse] parsed result object
2323
- # @yieldparam err [StandardError] error object if request failed
2324
- #
2325
- # @return [Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse]
2326
- #
2327
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2328
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2329
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2330
- def search_variant_sets(search_variant_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2331
- path = 'variantsets/search'
2332
- command = make_simple_command(:post, path, options)
2333
- command.request_representation = Google::Apis::GenomicsV1beta2::SearchVariantSetsRequest::Representation
2334
- command.request_object = search_variant_sets_request_object
2335
- command.response_representation = Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse::Representation
2336
- command.response_class = Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse
2337
- command.query['fields'] = fields unless fields.nil?
2338
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2339
- command.query['userIp'] = user_ip unless user_ip.nil?
2340
- execute_or_queue_command(command, &block)
2341
- end
2342
-
2343
- # Updates a variant set's metadata. All other modifications are silently ignored.
2344
- # @param [String] variant_set_id
2345
- # The ID of the variant to be updated (must already exist).
2346
- # @param [Google::Apis::GenomicsV1beta2::VariantSet] variant_set_object
2347
- # @param [String] fields
2348
- # Selector specifying which fields to include in a partial response.
2349
- # @param [String] quota_user
2350
- # Available to use for quota purposes for server-side applications. Can be any
2351
- # arbitrary string assigned to a user, but should not exceed 40 characters.
2352
- # Overrides userIp if both are provided.
2353
- # @param [String] user_ip
2354
- # IP address of the site where the request originates. Use this if you want to
2355
- # enforce per-user limits.
2356
- # @param [Google::Apis::RequestOptions] options
2357
- # Request-specific options
2358
- #
2359
- # @yield [result, err] Result & error if block supplied
2360
- # @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
2361
- # @yieldparam err [StandardError] error object if request failed
2362
- #
2363
- # @return [Google::Apis::GenomicsV1beta2::VariantSet]
2364
- #
2365
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
2366
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
2367
- # @raise [Google::Apis::AuthorizationError] Authorization is required
2368
- def update_variantset(variant_set_id, variant_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
2369
- path = 'variantsets/{variantSetId}'
2370
- command = make_simple_command(:put, path, options)
2371
- command.request_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
2372
- command.request_object = variant_set_object
2373
- command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
2374
- command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
2375
- command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
2376
- command.query['fields'] = fields unless fields.nil?
2377
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2378
- command.query['userIp'] = user_ip unless user_ip.nil?
2379
- execute_or_queue_command(command, &block)
2380
- end
2381
-
2382
- protected
2383
-
2384
- def apply_command_defaults(command)
2385
- command.query['key'] = key unless key.nil?
2386
- command.query['quotaUser'] = quota_user unless quota_user.nil?
2387
- command.query['userIp'] = user_ip unless user_ip.nil?
2388
- end
2389
- end
2390
- end
2391
- end
2392
- end