google-api-client 0.11.3 → 0.12.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +51 -0
- data/api_names.yaml +32317 -34465
- data/generated/google/apis/acceleratedmobilepageurl_v1/classes.rb +44 -44
- data/generated/google/apis/acceleratedmobilepageurl_v1/representations.rb +14 -14
- data/generated/google/apis/acceleratedmobilepageurl_v1/service.rb +10 -10
- data/generated/google/apis/adexchangebuyer2_v2beta1.rb +1 -1
- data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +305 -305
- data/generated/google/apis/adexchangebuyer2_v2beta1/representations.rb +82 -82
- data/generated/google/apis/adexchangebuyer2_v2beta1/service.rb +106 -106
- data/generated/google/apis/adexchangebuyer_v1_4/classes.rb +6 -6
- data/generated/google/apis/adexchangebuyer_v1_4/representations.rb +3 -3
- data/generated/google/apis/adexchangebuyer_v1_4/service.rb +3 -3
- data/generated/google/apis/adexchangeseller_v2_0/service.rb +10 -10
- data/generated/google/apis/admin_directory_v1/service.rb +26 -26
- data/generated/google/apis/adsense_v1_4.rb +1 -1
- data/generated/google/apis/adsense_v1_4/classes.rb +2 -2
- data/generated/google/apis/adsense_v1_4/representations.rb +3 -3
- data/generated/google/apis/adsense_v1_4/service.rb +44 -44
- data/generated/google/apis/adsensehost_v4_1.rb +1 -1
- data/generated/google/apis/adsensehost_v4_1/service.rb +22 -22
- data/generated/google/apis/analytics_v3/classes.rb +3 -3
- data/generated/google/apis/analytics_v3/representations.rb +3 -3
- data/generated/google/apis/analytics_v3/service.rb +82 -82
- data/generated/google/apis/analyticsreporting_v4.rb +1 -1
- data/generated/google/apis/analyticsreporting_v4/classes.rb +916 -916
- data/generated/google/apis/analyticsreporting_v4/representations.rb +167 -167
- data/generated/google/apis/analyticsreporting_v4/service.rb +7 -7
- data/generated/google/apis/androidenterprise_v1.rb +1 -1
- data/generated/google/apis/androidenterprise_v1/classes.rb +10 -10
- data/generated/google/apis/androidenterprise_v1/representations.rb +20 -20
- data/generated/google/apis/androidenterprise_v1/service.rb +43 -43
- data/generated/google/apis/androidpublisher_v2/classes.rb +26 -26
- data/generated/google/apis/androidpublisher_v2/representations.rb +46 -46
- data/generated/google/apis/androidpublisher_v2/service.rb +95 -95
- data/generated/google/apis/appengine_v1.rb +1 -1
- data/generated/google/apis/appengine_v1/classes.rb +825 -817
- data/generated/google/apis/appengine_v1/representations.rb +185 -184
- data/generated/google/apis/appengine_v1/service.rb +220 -216
- data/generated/google/apis/appstate_v1.rb +1 -1
- data/generated/google/apis/bigquery_v2.rb +1 -1
- data/generated/google/apis/bigquery_v2/classes.rb +9 -7
- data/generated/google/apis/bigquery_v2/representations.rb +8 -8
- data/generated/google/apis/bigquery_v2/service.rb +13 -13
- data/generated/google/apis/blogger_v3/service.rb +3 -3
- data/generated/google/apis/books_v1/classes.rb +55 -55
- data/generated/google/apis/books_v1/representations.rb +67 -67
- data/generated/google/apis/books_v1/service.rb +82 -82
- data/generated/google/apis/calendar_v3.rb +1 -1
- data/generated/google/apis/calendar_v3/classes.rb +6 -6
- data/generated/google/apis/calendar_v3/representations.rb +3 -3
- data/generated/google/apis/calendar_v3/service.rb +2 -2
- data/generated/google/apis/civicinfo_v2/classes.rb +1 -1
- data/generated/google/apis/civicinfo_v2/representations.rb +2 -2
- data/generated/google/apis/civicinfo_v2/service.rb +8 -8
- data/generated/google/apis/classroom_v1.rb +24 -24
- data/generated/google/apis/classroom_v1/classes.rb +381 -381
- data/generated/google/apis/classroom_v1/representations.rb +108 -108
- data/generated/google/apis/classroom_v1/service.rb +503 -503
- data/generated/google/apis/cloudbuild_v1.rb +1 -1
- data/generated/google/apis/cloudbuild_v1/classes.rb +219 -219
- data/generated/google/apis/cloudbuild_v1/representations.rb +62 -62
- data/generated/google/apis/cloudbuild_v1/service.rb +165 -165
- data/generated/google/apis/clouddebugger_v2.rb +1 -1
- data/generated/google/apis/clouddebugger_v2/classes.rb +133 -133
- data/generated/google/apis/clouddebugger_v2/representations.rb +29 -29
- data/generated/google/apis/clouddebugger_v2/service.rb +54 -54
- data/generated/google/apis/clouderrorreporting_v1beta1.rb +1 -1
- data/generated/google/apis/clouderrorreporting_v1beta1/classes.rb +177 -177
- data/generated/google/apis/clouderrorreporting_v1beta1/representations.rb +47 -47
- data/generated/google/apis/clouderrorreporting_v1beta1/service.rb +123 -123
- data/generated/google/apis/cloudfunctions_v1.rb +1 -1
- data/generated/google/apis/cloudfunctions_v1/service.rb +6 -6
- data/generated/google/apis/cloudkms_v1.rb +3 -3
- data/generated/google/apis/cloudkms_v1/classes.rb +229 -229
- data/generated/google/apis/cloudkms_v1/representations.rb +54 -54
- data/generated/google/apis/cloudkms_v1/service.rb +224 -224
- data/generated/google/apis/cloudresourcemanager_v1.rb +3 -3
- data/generated/google/apis/cloudresourcemanager_v1/classes.rb +1199 -1199
- data/generated/google/apis/cloudresourcemanager_v1/representations.rb +192 -192
- data/generated/google/apis/cloudresourcemanager_v1/service.rb +122 -122
- data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +495 -495
- data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +92 -92
- data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +320 -320
- data/generated/google/apis/cloudtrace_v1.rb +4 -4
- data/generated/google/apis/cloudtrace_v1/classes.rb +44 -44
- data/generated/google/apis/cloudtrace_v1/representations.rb +13 -13
- data/generated/google/apis/cloudtrace_v1/service.rb +28 -28
- data/generated/google/apis/compute_beta.rb +1 -1
- data/generated/google/apis/compute_beta/classes.rb +57 -15
- data/generated/google/apis/compute_beta/representations.rb +30 -14
- data/generated/google/apis/compute_beta/service.rb +52 -52
- data/generated/google/apis/compute_v1.rb +1 -1
- data/generated/google/apis/compute_v1/classes.rb +223 -10
- data/generated/google/apis/compute_v1/representations.rb +85 -16
- data/generated/google/apis/compute_v1/service.rb +327 -51
- data/generated/google/apis/container_v1/classes.rb +267 -267
- data/generated/google/apis/container_v1/representations.rb +61 -61
- data/generated/google/apis/container_v1/service.rb +123 -123
- data/generated/google/apis/content_v2.rb +1 -1
- data/generated/google/apis/content_v2/classes.rb +71 -71
- data/generated/google/apis/content_v2/representations.rb +105 -105
- data/generated/google/apis/content_v2/service.rb +120 -120
- data/generated/google/apis/dataflow_v1b3.rb +4 -4
- data/generated/google/apis/dataflow_v1b3/classes.rb +3442 -3452
- data/generated/google/apis/dataflow_v1b3/representations.rb +388 -389
- data/generated/google/apis/dataflow_v1b3/service.rb +265 -265
- data/generated/google/apis/dataproc_v1.rb +1 -1
- data/generated/google/apis/dataproc_v1/classes.rb +1059 -1059
- data/generated/google/apis/dataproc_v1/representations.rb +147 -147
- data/generated/google/apis/dataproc_v1/service.rb +309 -305
- data/generated/google/apis/datastore_v1.rb +1 -1
- data/generated/google/apis/datastore_v1/classes.rb +818 -818
- data/generated/google/apis/datastore_v1/representations.rb +151 -151
- data/generated/google/apis/datastore_v1/service.rb +62 -62
- data/generated/google/apis/deploymentmanager_v2/classes.rb +5 -5
- data/generated/google/apis/deploymentmanager_v2/representations.rb +10 -10
- data/generated/google/apis/deploymentmanager_v2/service.rb +20 -20
- data/generated/google/apis/discovery_v1/classes.rb +4 -4
- data/generated/google/apis/discovery_v1/representations.rb +2 -2
- data/generated/google/apis/discovery_v1/service.rb +1 -1
- data/generated/google/apis/dns_v1.rb +1 -1
- data/generated/google/apis/dns_v1/classes.rb +3 -3
- data/generated/google/apis/dns_v1/representations.rb +6 -6
- data/generated/google/apis/dns_v1/service.rb +12 -12
- data/generated/google/apis/dns_v2beta1.rb +1 -1
- data/generated/google/apis/doubleclickbidmanager_v1.rb +1 -1
- data/generated/google/apis/doubleclickbidmanager_v1/service.rb +8 -8
- data/generated/google/apis/doubleclicksearch_v2.rb +1 -1
- data/generated/google/apis/drive_v2/service.rb +1 -1
- data/generated/google/apis/drive_v3/service.rb +1 -1
- data/generated/google/apis/firebasedynamiclinks_v1.rb +1 -1
- data/generated/google/apis/firebasedynamiclinks_v1/classes.rb +188 -188
- data/generated/google/apis/firebasedynamiclinks_v1/representations.rb +62 -62
- data/generated/google/apis/firebasedynamiclinks_v1/service.rb +4 -4
- data/generated/google/apis/firebaserules_v1.rb +1 -1
- data/generated/google/apis/firebaserules_v1/classes.rb +403 -206
- data/generated/google/apis/firebaserules_v1/representations.rb +134 -54
- data/generated/google/apis/firebaserules_v1/service.rb +89 -89
- data/generated/google/apis/fusiontables_v2/service.rb +2 -2
- data/generated/google/apis/games_configuration_v1configuration.rb +1 -1
- data/generated/google/apis/games_configuration_v1configuration/classes.rb +2 -2
- data/generated/google/apis/games_configuration_v1configuration/representations.rb +4 -4
- data/generated/google/apis/games_configuration_v1configuration/service.rb +8 -8
- data/generated/google/apis/games_management_v1management.rb +1 -1
- data/generated/google/apis/games_v1.rb +1 -1
- data/generated/google/apis/games_v1/classes.rb +23 -23
- data/generated/google/apis/games_v1/representations.rb +43 -43
- data/generated/google/apis/games_v1/service.rb +72 -72
- data/generated/google/apis/genomics_v1.rb +7 -7
- data/generated/google/apis/genomics_v1/classes.rb +2296 -2297
- data/generated/google/apis/genomics_v1/representations.rb +298 -298
- data/generated/google/apis/genomics_v1/service.rb +1160 -1160
- data/generated/google/apis/groupssettings_v1/service.rb +0 -3
- data/generated/google/apis/iam_v1.rb +1 -1
- data/generated/google/apis/iam_v1/classes.rb +235 -235
- data/generated/google/apis/iam_v1/representations.rb +72 -72
- data/generated/google/apis/iam_v1/service.rb +189 -189
- data/generated/google/apis/identitytoolkit_v3/classes.rb +15 -15
- data/generated/google/apis/identitytoolkit_v3/representations.rb +30 -30
- data/generated/google/apis/identitytoolkit_v3/service.rb +64 -64
- data/generated/google/apis/kgsearch_v1/classes.rb +6 -6
- data/generated/google/apis/kgsearch_v1/representations.rb +1 -1
- data/generated/google/apis/kgsearch_v1/service.rb +10 -10
- data/generated/google/apis/language_v1/classes.rb +220 -220
- data/generated/google/apis/language_v1/representations.rb +81 -81
- data/generated/google/apis/language_v1/service.rb +43 -43
- data/generated/google/apis/language_v1beta1/classes.rb +448 -448
- data/generated/google/apis/language_v1beta1/representations.rb +106 -106
- data/generated/google/apis/language_v1beta1/service.rb +31 -31
- data/generated/google/apis/licensing_v1/service.rb +2 -2
- data/generated/google/apis/logging_v2/classes.rb +737 -737
- data/generated/google/apis/logging_v2/representations.rb +120 -120
- data/generated/google/apis/logging_v2/service.rb +479 -479
- data/generated/google/apis/logging_v2beta1/classes.rb +293 -293
- data/generated/google/apis/logging_v2beta1/representations.rb +54 -54
- data/generated/google/apis/logging_v2beta1/service.rb +349 -349
- data/generated/google/apis/manufacturers_v1/classes.rb +423 -423
- data/generated/google/apis/manufacturers_v1/representations.rb +61 -61
- data/generated/google/apis/manufacturers_v1/service.rb +8 -8
- data/generated/google/apis/mirror_v1/classes.rb +5 -5
- data/generated/google/apis/mirror_v1/representations.rb +10 -10
- data/generated/google/apis/mirror_v1/service.rb +20 -20
- data/generated/google/apis/ml_v1.rb +1 -1
- data/generated/google/apis/ml_v1/classes.rb +1285 -1205
- data/generated/google/apis/ml_v1/representations.rb +204 -174
- data/generated/google/apis/ml_v1/service.rb +150 -145
- data/generated/google/apis/monitoring_v3.rb +1 -1
- data/generated/google/apis/monitoring_v3/classes.rb +880 -880
- data/generated/google/apis/monitoring_v3/representations.rb +154 -154
- data/generated/google/apis/monitoring_v3/service.rb +299 -299
- data/generated/google/apis/mybusiness_v3/service.rb +5 -5
- data/generated/google/apis/oauth2_v2/service.rb +1 -1
- data/generated/google/apis/pagespeedonline_v2/classes.rb +11 -11
- data/generated/google/apis/pagespeedonline_v2/representations.rb +13 -13
- data/generated/google/apis/pagespeedonline_v2/service.rb +1 -1
- data/generated/google/apis/partners_v2.rb +1 -1
- data/generated/google/apis/partners_v2/classes.rb +524 -509
- data/generated/google/apis/partners_v2/representations.rb +115 -111
- data/generated/google/apis/partners_v2/service.rb +287 -287
- data/generated/google/apis/people_v1.rb +13 -13
- data/generated/google/apis/people_v1/classes.rb +1150 -1150
- data/generated/google/apis/people_v1/representations.rb +258 -258
- data/generated/google/apis/people_v1/service.rb +7 -7
- data/generated/google/apis/plus_domains_v1.rb +1 -1
- data/generated/google/apis/plus_domains_v1/service.rb +4 -4
- data/generated/google/apis/plus_v1.rb +1 -1
- data/generated/google/apis/plus_v1/service.rb +1 -1
- data/generated/google/apis/prediction_v1_6/service.rb +8 -8
- data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +554 -554
- data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +108 -108
- data/generated/google/apis/proximitybeacon_v1beta1/service.rb +224 -224
- data/generated/google/apis/pubsub_v1/classes.rb +228 -228
- data/generated/google/apis/pubsub_v1/representations.rb +69 -69
- data/generated/google/apis/pubsub_v1/service.rb +182 -182
- data/generated/google/apis/qpx_express_v1/classes.rb +2 -2
- data/generated/google/apis/qpx_express_v1/representations.rb +4 -4
- data/generated/google/apis/qpx_express_v1/service.rb +8 -8
- data/generated/google/apis/replicapool_v1beta2/classes.rb +5 -5
- data/generated/google/apis/replicapool_v1beta2/representations.rb +10 -10
- data/generated/google/apis/replicapool_v1beta2/service.rb +21 -21
- data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +1 -1
- data/generated/google/apis/resourceviews_v1beta2/classes.rb +5 -5
- data/generated/google/apis/resourceviews_v1beta2/representations.rb +10 -10
- data/generated/google/apis/resourceviews_v1beta2/service.rb +20 -20
- data/generated/google/apis/runtimeconfig_v1.rb +3 -3
- data/generated/google/apis/runtimeconfig_v1/classes.rb +19 -19
- data/generated/google/apis/runtimeconfig_v1/representations.rb +10 -10
- data/generated/google/apis/runtimeconfig_v1/service.rb +4 -4
- data/generated/google/apis/script_v1.rb +9 -9
- data/generated/google/apis/script_v1/classes.rb +94 -94
- data/generated/google/apis/script_v1/representations.rb +26 -26
- data/generated/google/apis/searchconsole_v1.rb +1 -1
- data/generated/google/apis/searchconsole_v1/classes.rb +65 -65
- data/generated/google/apis/searchconsole_v1/representations.rb +27 -27
- data/generated/google/apis/searchconsole_v1/service.rb +6 -6
- data/generated/google/apis/servicecontrol_v1/classes.rb +1131 -1131
- data/generated/google/apis/servicecontrol_v1/representations.rb +195 -195
- data/generated/google/apis/servicecontrol_v1/service.rb +57 -57
- data/generated/google/apis/servicemanagement_v1.rb +7 -7
- data/generated/google/apis/servicemanagement_v1/classes.rb +3543 -3585
- data/generated/google/apis/servicemanagement_v1/representations.rb +556 -556
- data/generated/google/apis/servicemanagement_v1/service.rb +309 -309
- data/generated/google/apis/serviceuser_v1.rb +4 -4
- data/generated/google/apis/serviceuser_v1/classes.rb +2734 -2776
- data/generated/google/apis/serviceuser_v1/representations.rb +398 -398
- data/generated/google/apis/serviceuser_v1/service.rb +16 -16
- data/generated/google/apis/sheets_v4/classes.rb +1489 -1489
- data/generated/google/apis/sheets_v4/representations.rb +324 -324
- data/generated/google/apis/sheets_v4/service.rb +49 -49
- data/generated/google/apis/site_verification_v1/classes.rb +6 -6
- data/generated/google/apis/site_verification_v1/representations.rb +8 -8
- data/generated/google/apis/site_verification_v1/service.rb +12 -12
- data/generated/google/apis/slides_v1.rb +4 -4
- data/generated/google/apis/slides_v1/classes.rb +2907 -2907
- data/generated/google/apis/slides_v1/representations.rb +695 -695
- data/generated/google/apis/slides_v1/service.rb +40 -40
- data/generated/google/apis/sourcerepo_v1.rb +7 -1
- data/generated/google/apis/sourcerepo_v1/classes.rb +459 -452
- data/generated/google/apis/sourcerepo_v1/representations.rb +90 -89
- data/generated/google/apis/sourcerepo_v1/service.rb +101 -100
- data/generated/google/apis/spanner_v1/classes.rb +2557 -2557
- data/generated/google/apis/spanner_v1/representations.rb +205 -205
- data/generated/google/apis/spanner_v1/service.rb +525 -525
- data/generated/google/apis/speech_v1beta1.rb +1 -1
- data/generated/google/apis/speech_v1beta1/classes.rb +73 -73
- data/generated/google/apis/speech_v1beta1/representations.rb +25 -25
- data/generated/google/apis/speech_v1beta1/service.rb +33 -33
- data/generated/google/apis/sqladmin_v1beta4.rb +1 -1
- data/generated/google/apis/sqladmin_v1beta4/classes.rb +16 -15
- data/generated/google/apis/sqladmin_v1beta4/representations.rb +28 -28
- data/generated/google/apis/sqladmin_v1beta4/service.rb +58 -57
- data/generated/google/apis/storage_v1/classes.rb +6 -6
- data/generated/google/apis/storage_v1/representations.rb +4 -4
- data/generated/google/apis/storage_v1/service.rb +1 -1
- data/generated/google/apis/storagetransfer_v1.rb +1 -1
- data/generated/google/apis/storagetransfer_v1/classes.rb +357 -357
- data/generated/google/apis/storagetransfer_v1/representations.rb +87 -87
- data/generated/google/apis/storagetransfer_v1/service.rb +53 -48
- data/generated/google/apis/tagmanager_v1/service.rb +33 -33
- data/generated/google/apis/toolresults_v1beta3.rb +1 -1
- data/generated/google/apis/translate_v2.rb +1 -1
- data/generated/google/apis/translate_v2/classes.rb +46 -46
- data/generated/google/apis/translate_v2/representations.rb +22 -22
- data/generated/google/apis/translate_v2/service.rb +81 -74
- data/generated/google/apis/vision_v1/classes.rb +1290 -1290
- data/generated/google/apis/vision_v1/representations.rb +166 -166
- data/generated/google/apis/vision_v1/service.rb +6 -6
- data/generated/google/apis/webmasters_v3/classes.rb +4 -4
- data/generated/google/apis/webmasters_v3/representations.rb +8 -8
- data/generated/google/apis/webmasters_v3/service.rb +21 -21
- data/generated/google/apis/youtube_analytics_v1.rb +1 -1
- data/generated/google/apis/youtube_analytics_v1/classes.rb +2 -2
- data/generated/google/apis/youtube_analytics_v1/representations.rb +4 -4
- data/generated/google/apis/youtube_analytics_v1/service.rb +8 -8
- data/generated/google/apis/youtube_v3/classes.rb +20 -20
- data/generated/google/apis/youtube_v3/representations.rb +40 -40
- data/generated/google/apis/youtube_v3/service.rb +80 -80
- data/generated/google/apis/youtubereporting_v1.rb +1 -1
- data/generated/google/apis/youtubereporting_v1/classes.rb +127 -127
- data/generated/google/apis/youtubereporting_v1/representations.rb +36 -36
- data/generated/google/apis/youtubereporting_v1/service.rb +90 -90
- data/google-api-client.gemspec +3 -3
- data/lib/google/apis/core/base_service.rb +6 -0
- data/lib/google/apis/generator/annotator.rb +2 -2
- data/lib/google/apis/generator/model.rb +2 -2
- data/lib/google/apis/version.rb +1 -1
- metadata +11 -94
- data/dl.rb +0 -0
- data/generated/google/apis/adexchangebuyer_v1_3.rb +0 -35
- data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +0 -1335
- data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +0 -446
- data/generated/google/apis/adexchangebuyer_v1_3/service.rb +0 -872
- data/generated/google/apis/appengine_v1beta4.rb +0 -35
- data/generated/google/apis/appengine_v1beta4/classes.rb +0 -1585
- data/generated/google/apis/appengine_v1beta4/representations.rb +0 -542
- data/generated/google/apis/appengine_v1beta4/service.rb +0 -477
- data/generated/google/apis/appengine_v1beta5.rb +0 -40
- data/generated/google/apis/appengine_v1beta5/classes.rb +0 -2094
- data/generated/google/apis/appengine_v1beta5/representations.rb +0 -802
- data/generated/google/apis/appengine_v1beta5/service.rb +0 -867
- data/generated/google/apis/autoscaler_v1beta2.rb +0 -38
- data/generated/google/apis/autoscaler_v1beta2/classes.rb +0 -710
- data/generated/google/apis/autoscaler_v1beta2/representations.rb +0 -296
- data/generated/google/apis/autoscaler_v1beta2/service.rb +0 -478
- data/generated/google/apis/classroom_v1beta1.rb +0 -49
- data/generated/google/apis/classroom_v1beta1/classes.rb +0 -447
- data/generated/google/apis/classroom_v1beta1/representations.rb +0 -190
- data/generated/google/apis/classroom_v1beta1/service.rb +0 -791
- data/generated/google/apis/cloudkms_v1beta1.rb +0 -35
- data/generated/google/apis/cloudkms_v1beta1/classes.rb +0 -1039
- data/generated/google/apis/cloudkms_v1beta1/representations.rb +0 -448
- data/generated/google/apis/cloudkms_v1beta1/service.rb +0 -933
- data/generated/google/apis/cloudlatencytest_v2.rb +0 -34
- data/generated/google/apis/cloudlatencytest_v2/classes.rb +0 -195
- data/generated/google/apis/cloudlatencytest_v2/representations.rb +0 -127
- data/generated/google/apis/cloudlatencytest_v2/service.rb +0 -135
- data/generated/google/apis/container_v1beta1.rb +0 -35
- data/generated/google/apis/container_v1beta1/classes.rb +0 -466
- data/generated/google/apis/container_v1beta1/representations.rb +0 -177
- data/generated/google/apis/container_v1beta1/service.rb +0 -394
- data/generated/google/apis/coordinate_v1.rb +0 -37
- data/generated/google/apis/coordinate_v1/classes.rb +0 -669
- data/generated/google/apis/coordinate_v1/representations.rb +0 -321
- data/generated/google/apis/coordinate_v1/service.rb +0 -678
- data/generated/google/apis/datastore_v1beta2.rb +0 -40
- data/generated/google/apis/datastore_v1beta2/classes.rb +0 -1186
- data/generated/google/apis/datastore_v1beta2/representations.rb +0 -594
- data/generated/google/apis/datastore_v1beta2/service.rb +0 -294
- data/generated/google/apis/datastore_v1beta3.rb +0 -38
- data/generated/google/apis/datastore_v1beta3/classes.rb +0 -1284
- data/generated/google/apis/datastore_v1beta3/representations.rb +0 -572
- data/generated/google/apis/datastore_v1beta3/service.rb +0 -259
- data/generated/google/apis/deploymentmanager_v2beta2.rb +0 -44
- data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +0 -843
- data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +0 -306
- data/generated/google/apis/deploymentmanager_v2beta2/service.rb +0 -689
- data/generated/google/apis/dfareporting_v2_1.rb +0 -37
- data/generated/google/apis/dfareporting_v2_1/classes.rb +0 -10770
- data/generated/google/apis/dfareporting_v2_1/representations.rb +0 -3438
- data/generated/google/apis/dfareporting_v2_1/service.rb +0 -8585
- data/generated/google/apis/dfareporting_v2_3.rb +0 -37
- data/generated/google/apis/dfareporting_v2_3/classes.rb +0 -10839
- data/generated/google/apis/dfareporting_v2_3/representations.rb +0 -3829
- data/generated/google/apis/dfareporting_v2_3/service.rb +0 -8581
- data/generated/google/apis/dfareporting_v2_5.rb +0 -40
- data/generated/google/apis/dfareporting_v2_5/classes.rb +0 -11225
- data/generated/google/apis/dfareporting_v2_5/representations.rb +0 -3982
- data/generated/google/apis/dfareporting_v2_5/service.rb +0 -8755
- data/generated/google/apis/dfareporting_v2_6.rb +0 -40
- data/generated/google/apis/dfareporting_v2_6/classes.rb +0 -11599
- data/generated/google/apis/dfareporting_v2_6/representations.rb +0 -4119
- data/generated/google/apis/dfareporting_v2_6/service.rb +0 -9026
- data/generated/google/apis/gan_v1beta1.rb +0 -31
- data/generated/google/apis/gan_v1beta1/classes.rb +0 -1428
- data/generated/google/apis/gan_v1beta1/representations.rb +0 -462
- data/generated/google/apis/gan_v1beta1/service.rb +0 -682
- data/generated/google/apis/genomics_v1beta2.rb +0 -46
- data/generated/google/apis/genomics_v1beta2/classes.rb +0 -3288
- data/generated/google/apis/genomics_v1beta2/representations.rb +0 -1194
- data/generated/google/apis/genomics_v1beta2/service.rb +0 -2392
- data/generated/google/apis/logging_v1beta3.rb +0 -47
- data/generated/google/apis/logging_v1beta3/classes.rb +0 -1079
- data/generated/google/apis/logging_v1beta3/representations.rb +0 -366
- data/generated/google/apis/logging_v1beta3/service.rb +0 -1001
- data/generated/google/apis/manager_v1beta2.rb +0 -53
- data/generated/google/apis/manager_v1beta2/classes.rb +0 -1287
- data/generated/google/apis/manager_v1beta2/representations.rb +0 -606
- data/generated/google/apis/manager_v1beta2/service.rb +0 -372
- data/generated/google/apis/pubsub_v1beta2.rb +0 -37
- data/generated/google/apis/pubsub_v1beta2/classes.rb +0 -620
- data/generated/google/apis/pubsub_v1beta2/representations.rb +0 -282
- data/generated/google/apis/pubsub_v1beta2/service.rb +0 -774
- data/generated/google/apis/tracing_v1.rb +0 -40
- data/generated/google/apis/tracing_v1/classes.rb +0 -664
- data/generated/google/apis/tracing_v1/representations.rb +0 -279
- data/generated/google/apis/tracing_v1/service.rb +0 -226
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# Copyright 2015 Google Inc.
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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require 'google/apis/core/base_service'
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require 'google/apis/core/json_representation'
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require 'google/apis/core/hashable'
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require 'google/apis/errors'
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module Google
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module Apis
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module GenomicsV1beta2
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# Genomics API
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#
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# Provides access to Genomics data.
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#
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# @example
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# require 'google/apis/genomics_v1beta2'
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#
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# Genomics = Google::Apis::GenomicsV1beta2 # Alias the module
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# service = Genomics::GenomicsService.new
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#
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# @see https://developers.google.com/genomics/v1beta2/reference
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class GenomicsService < Google::Apis::Core::BaseService
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# @return [String]
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# API key. Your API key identifies your project and provides you with API access,
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# quota, and reports. Required unless you provide an OAuth 2.0 token.
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attr_accessor :key
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# @return [String]
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# Overrides userIp if both are provided.
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attr_accessor :quota_user
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# @return [String]
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# IP address of the site where the request originates. Use this if you want to
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# enforce per-user limits.
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attr_accessor :user_ip
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def initialize
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super('https://www.googleapis.com/', 'genomics/v1beta2/')
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end
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# Creates a new annotation set. Caller must have WRITE permission for the
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# associated dataset.
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# @param [Google::Apis::GenomicsV1beta2::AnnotationSet] annotation_set_object
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# Overrides userIp if both are provided.
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# @param [String] user_ip
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# IP address of the site where the request originates. Use this if you want to
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# enforce per-user limits.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yieldparam result [Google::Apis::GenomicsV1beta2::AnnotationSet] parsed result object
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#
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# @return [Google::Apis::GenomicsV1beta2::AnnotationSet]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def create_annotation_set(annotation_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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path = 'annotationSets'
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command = make_simple_command(:post, path, options)
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command.request_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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command.request_object = annotation_set_object
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command.response_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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command.response_class = Google::Apis::GenomicsV1beta2::AnnotationSet
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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command.query['userIp'] = user_ip unless user_ip.nil?
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execute_or_queue_command(command, &block)
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end
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# Deletes an annotation set. Caller must have WRITE permission for the
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# associated annotation set.
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# @param [String] annotation_set_id
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# IP address of the site where the request originates. Use this if you want to
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# enforce per-user limits.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [NilClass] No result returned for this method
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# @return [void]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def delete_annotation_set(annotation_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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path = 'annotationSets/{annotationSetId}'
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command = make_simple_command(:delete, path, options)
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command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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command.query['userIp'] = user_ip unless user_ip.nil?
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execute_or_queue_command(command, &block)
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end
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# Gets an annotation set. Caller must have READ permission for the associated
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# dataset.
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# Request-specific options
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#
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# @yieldparam result [Google::Apis::GenomicsV1beta2::AnnotationSet] parsed result object
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#
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def get_annotation_set(annotation_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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path = 'annotationSets/{annotationSetId}'
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command = make_simple_command(:get, path, options)
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command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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end
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#
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def patch_annotation_set(annotation_set_id, annotation_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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path = 'annotationSets/{annotationSetId}'
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command = make_simple_command(:patch, path, options)
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command.request_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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command.request_object = annotation_set_object
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command.response_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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command.response_class = Google::Apis::GenomicsV1beta2::AnnotationSet
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command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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execute_or_queue_command(command, &block)
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end
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# Searches for annotation sets that match the given criteria. Results are
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# returned in a deterministic order. Caller must have READ permission for the
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# queried datasets.
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# @param [Google::Apis::GenomicsV1beta2::SearchAnnotationSetsRequest] search_annotation_sets_request_object
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# Selector specifying which fields to include in a partial response.
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# Overrides userIp if both are provided.
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# @param [String] user_ip
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# IP address of the site where the request originates. Use this if you want to
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# enforce per-user limits.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def search_annotation_sets(search_annotation_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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path = 'annotationSets/search'
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command = make_simple_command(:post, path, options)
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command.request_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationSetsRequest::Representation
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command.request_object = search_annotation_sets_request_object
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command.response_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse::Representation
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command.response_class = Google::Apis::GenomicsV1beta2::SearchAnnotationSetsResponse
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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command.query['userIp'] = user_ip unless user_ip.nil?
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execute_or_queue_command(command, &block)
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end
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# Updates an annotation set. The update must respect all mutability restrictions
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# and other invariants described on the annotation set resource. Caller must
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# have WRITE permission for the associated dataset.
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# @param [String] annotation_set_id
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# The ID of the annotation set to be updated.
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# @param [Google::Apis::GenomicsV1beta2::AnnotationSet] annotation_set_object
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# Overrides userIp if both are provided.
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# @param [String] user_ip
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# IP address of the site where the request originates. Use this if you want to
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# enforce per-user limits.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1beta2::AnnotationSet] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1beta2::AnnotationSet]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def update_annotation_set(annotation_set_id, annotation_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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path = 'annotationSets/{annotationSetId}'
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command = make_simple_command(:put, path, options)
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command.request_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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command.request_object = annotation_set_object
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command.response_representation = Google::Apis::GenomicsV1beta2::AnnotationSet::Representation
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command.response_class = Google::Apis::GenomicsV1beta2::AnnotationSet
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command.params['annotationSetId'] = annotation_set_id unless annotation_set_id.nil?
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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command.query['userIp'] = user_ip unless user_ip.nil?
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execute_or_queue_command(command, &block)
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end
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# Creates one or more new annotations atomically. All annotations must belong to
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# the same annotation set. Caller must have WRITE permission for this annotation
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# set. For optimal performance, batch positionally adjacent annotations together.
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# If the request has a systemic issue, such as an attempt to write to an
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# inaccessible annotation set, the entire RPC will fail accordingly. For lesser
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# data issues, when possible an error will be isolated to the corresponding
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# batch entry in the response; the remaining well formed annotations will be
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# created normally.
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# @param [Google::Apis::GenomicsV1beta2::BatchCreateAnnotationsRequest] batch_create_annotations_request_object
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# Overrides userIp if both are provided.
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# @param [String] user_ip
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# IP address of the site where the request originates. Use this if you want to
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# enforce per-user limits.
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# @param [Google::Apis::RequestOptions] options
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# Request-specific options
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#
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# @yield [result, err] Result & error if block supplied
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# @yieldparam result [Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse] parsed result object
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# @yieldparam err [StandardError] error object if request failed
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#
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# @return [Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse]
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def batch_create_annotations(batch_create_annotations_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
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path = 'annotations:batchCreate'
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command = make_simple_command(:post, path, options)
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command.request_representation = Google::Apis::GenomicsV1beta2::BatchCreateAnnotationsRequest::Representation
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command.request_object = batch_create_annotations_request_object
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command.response_representation = Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse::Representation
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command.response_class = Google::Apis::GenomicsV1beta2::BatchAnnotationsResponse
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command.query['fields'] = fields unless fields.nil?
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command.query['quotaUser'] = quota_user unless quota_user.nil?
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command.query['userIp'] = user_ip unless user_ip.nil?
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execute_or_queue_command(command, &block)
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end
|
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# Creates a new annotation. Caller must have WRITE permission for the associated
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# annotation set.
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# @param [Google::Apis::GenomicsV1beta2::Annotation] annotation_object
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# @param [String] fields
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# Selector specifying which fields to include in a partial response.
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# @param [String] quota_user
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# Available to use for quota purposes for server-side applications. Can be any
|
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# arbitrary string assigned to a user, but should not exceed 40 characters.
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# Overrides userIp if both are provided.
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# @param [String] user_ip
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# IP address of the site where the request originates. Use this if you want to
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# enforce per-user limits.
|
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|
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# @param [Google::Apis::RequestOptions] options
|
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|
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# Request-specific options
|
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|
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#
|
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|
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# @yield [result, err] Result & error if block supplied
|
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# @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
|
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# @yieldparam err [StandardError] error object if request failed
|
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#
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# @return [Google::Apis::GenomicsV1beta2::Annotation]
|
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#
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# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
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# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
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# @raise [Google::Apis::AuthorizationError] Authorization is required
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def create_annotation(annotation_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
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|
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path = 'annotations'
|
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command = make_simple_command(:post, path, options)
|
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|
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command.request_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
|
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command.request_object = annotation_object
|
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command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
|
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command.response_class = Google::Apis::GenomicsV1beta2::Annotation
|
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command.query['fields'] = fields unless fields.nil?
|
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command.query['quotaUser'] = quota_user unless quota_user.nil?
|
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|
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command.query['userIp'] = user_ip unless user_ip.nil?
|
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execute_or_queue_command(command, &block)
|
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|
-
end
|
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|
-
|
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|
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# Deletes an annotation. Caller must have WRITE permission for the associated
|
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|
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# annotation set.
|
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|
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# @param [String] annotation_id
|
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|
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# The ID of the annotation set to be deleted.
|
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|
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# @param [String] fields
|
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|
-
# Selector specifying which fields to include in a partial response.
|
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|
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# @param [String] quota_user
|
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|
-
# Available to use for quota purposes for server-side applications. Can be any
|
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|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
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|
-
# Overrides userIp if both are provided.
|
375
|
-
# @param [String] user_ip
|
376
|
-
# IP address of the site where the request originates. Use this if you want to
|
377
|
-
# enforce per-user limits.
|
378
|
-
# @param [Google::Apis::RequestOptions] options
|
379
|
-
# Request-specific options
|
380
|
-
#
|
381
|
-
# @yield [result, err] Result & error if block supplied
|
382
|
-
# @yieldparam result [NilClass] No result returned for this method
|
383
|
-
# @yieldparam err [StandardError] error object if request failed
|
384
|
-
#
|
385
|
-
# @return [void]
|
386
|
-
#
|
387
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
388
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
389
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
390
|
-
def delete_annotation(annotation_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
391
|
-
path = 'annotations/{annotationId}'
|
392
|
-
command = make_simple_command(:delete, path, options)
|
393
|
-
command.params['annotationId'] = annotation_id unless annotation_id.nil?
|
394
|
-
command.query['fields'] = fields unless fields.nil?
|
395
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
396
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
397
|
-
execute_or_queue_command(command, &block)
|
398
|
-
end
|
399
|
-
|
400
|
-
# Gets an annotation. Caller must have READ permission for the associated
|
401
|
-
# annotation set.
|
402
|
-
# @param [String] annotation_id
|
403
|
-
# The ID of the annotation set to be retrieved.
|
404
|
-
# @param [String] fields
|
405
|
-
# Selector specifying which fields to include in a partial response.
|
406
|
-
# @param [String] quota_user
|
407
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
408
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
409
|
-
# Overrides userIp if both are provided.
|
410
|
-
# @param [String] user_ip
|
411
|
-
# IP address of the site where the request originates. Use this if you want to
|
412
|
-
# enforce per-user limits.
|
413
|
-
# @param [Google::Apis::RequestOptions] options
|
414
|
-
# Request-specific options
|
415
|
-
#
|
416
|
-
# @yield [result, err] Result & error if block supplied
|
417
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
|
418
|
-
# @yieldparam err [StandardError] error object if request failed
|
419
|
-
#
|
420
|
-
# @return [Google::Apis::GenomicsV1beta2::Annotation]
|
421
|
-
#
|
422
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
423
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
424
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
425
|
-
def get_annotation(annotation_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
426
|
-
path = 'annotations/{annotationId}'
|
427
|
-
command = make_simple_command(:get, path, options)
|
428
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
|
429
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Annotation
|
430
|
-
command.params['annotationId'] = annotation_id unless annotation_id.nil?
|
431
|
-
command.query['fields'] = fields unless fields.nil?
|
432
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
433
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
434
|
-
execute_or_queue_command(command, &block)
|
435
|
-
end
|
436
|
-
|
437
|
-
# Updates an annotation. The update must respect all mutability restrictions and
|
438
|
-
# other invariants described on the annotation resource. Caller must have WRITE
|
439
|
-
# permission for the associated dataset. This method supports patch semantics.
|
440
|
-
# @param [String] annotation_id
|
441
|
-
# The ID of the annotation set to be updated.
|
442
|
-
# @param [Google::Apis::GenomicsV1beta2::Annotation] annotation_object
|
443
|
-
# @param [String] fields
|
444
|
-
# Selector specifying which fields to include in a partial response.
|
445
|
-
# @param [String] quota_user
|
446
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
447
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
448
|
-
# Overrides userIp if both are provided.
|
449
|
-
# @param [String] user_ip
|
450
|
-
# IP address of the site where the request originates. Use this if you want to
|
451
|
-
# enforce per-user limits.
|
452
|
-
# @param [Google::Apis::RequestOptions] options
|
453
|
-
# Request-specific options
|
454
|
-
#
|
455
|
-
# @yield [result, err] Result & error if block supplied
|
456
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
|
457
|
-
# @yieldparam err [StandardError] error object if request failed
|
458
|
-
#
|
459
|
-
# @return [Google::Apis::GenomicsV1beta2::Annotation]
|
460
|
-
#
|
461
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
462
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
463
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
464
|
-
def patch_annotation(annotation_id, annotation_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
465
|
-
path = 'annotations/{annotationId}'
|
466
|
-
command = make_simple_command(:patch, path, options)
|
467
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
|
468
|
-
command.request_object = annotation_object
|
469
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
|
470
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Annotation
|
471
|
-
command.params['annotationId'] = annotation_id unless annotation_id.nil?
|
472
|
-
command.query['fields'] = fields unless fields.nil?
|
473
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
474
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
475
|
-
execute_or_queue_command(command, &block)
|
476
|
-
end
|
477
|
-
|
478
|
-
# Searches for annotations that match the given criteria. Results are returned
|
479
|
-
# ordered by start position. Annotations that have matching start positions are
|
480
|
-
# ordered deterministically. Caller must have READ permission for the queried
|
481
|
-
# annotation sets.
|
482
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchAnnotationsRequest] search_annotations_request_object
|
483
|
-
# @param [String] fields
|
484
|
-
# Selector specifying which fields to include in a partial response.
|
485
|
-
# @param [String] quota_user
|
486
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
487
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
488
|
-
# Overrides userIp if both are provided.
|
489
|
-
# @param [String] user_ip
|
490
|
-
# IP address of the site where the request originates. Use this if you want to
|
491
|
-
# enforce per-user limits.
|
492
|
-
# @param [Google::Apis::RequestOptions] options
|
493
|
-
# Request-specific options
|
494
|
-
#
|
495
|
-
# @yield [result, err] Result & error if block supplied
|
496
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse] parsed result object
|
497
|
-
# @yieldparam err [StandardError] error object if request failed
|
498
|
-
#
|
499
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse]
|
500
|
-
#
|
501
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
502
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
503
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
504
|
-
def search_annotations(search_annotations_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
505
|
-
path = 'annotations/search'
|
506
|
-
command = make_simple_command(:post, path, options)
|
507
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationsRequest::Representation
|
508
|
-
command.request_object = search_annotations_request_object
|
509
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse::Representation
|
510
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchAnnotationsResponse
|
511
|
-
command.query['fields'] = fields unless fields.nil?
|
512
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
513
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
514
|
-
execute_or_queue_command(command, &block)
|
515
|
-
end
|
516
|
-
|
517
|
-
# Updates an annotation. The update must respect all mutability restrictions and
|
518
|
-
# other invariants described on the annotation resource. Caller must have WRITE
|
519
|
-
# permission for the associated dataset.
|
520
|
-
# @param [String] annotation_id
|
521
|
-
# The ID of the annotation set to be updated.
|
522
|
-
# @param [Google::Apis::GenomicsV1beta2::Annotation] annotation_object
|
523
|
-
# @param [String] fields
|
524
|
-
# Selector specifying which fields to include in a partial response.
|
525
|
-
# @param [String] quota_user
|
526
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
527
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
528
|
-
# Overrides userIp if both are provided.
|
529
|
-
# @param [String] user_ip
|
530
|
-
# IP address of the site where the request originates. Use this if you want to
|
531
|
-
# enforce per-user limits.
|
532
|
-
# @param [Google::Apis::RequestOptions] options
|
533
|
-
# Request-specific options
|
534
|
-
#
|
535
|
-
# @yield [result, err] Result & error if block supplied
|
536
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Annotation] parsed result object
|
537
|
-
# @yieldparam err [StandardError] error object if request failed
|
538
|
-
#
|
539
|
-
# @return [Google::Apis::GenomicsV1beta2::Annotation]
|
540
|
-
#
|
541
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
542
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
543
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
544
|
-
def update_annotation(annotation_id, annotation_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
545
|
-
path = 'annotations/{annotationId}'
|
546
|
-
command = make_simple_command(:put, path, options)
|
547
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
|
548
|
-
command.request_object = annotation_object
|
549
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Annotation::Representation
|
550
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Annotation
|
551
|
-
command.params['annotationId'] = annotation_id unless annotation_id.nil?
|
552
|
-
command.query['fields'] = fields unless fields.nil?
|
553
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
554
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
555
|
-
execute_or_queue_command(command, &block)
|
556
|
-
end
|
557
|
-
|
558
|
-
# Creates a new call set.
|
559
|
-
# @param [Google::Apis::GenomicsV1beta2::CallSet] call_set_object
|
560
|
-
# @param [String] fields
|
561
|
-
# Selector specifying which fields to include in a partial response.
|
562
|
-
# @param [String] quota_user
|
563
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
564
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
565
|
-
# Overrides userIp if both are provided.
|
566
|
-
# @param [String] user_ip
|
567
|
-
# IP address of the site where the request originates. Use this if you want to
|
568
|
-
# enforce per-user limits.
|
569
|
-
# @param [Google::Apis::RequestOptions] options
|
570
|
-
# Request-specific options
|
571
|
-
#
|
572
|
-
# @yield [result, err] Result & error if block supplied
|
573
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
|
574
|
-
# @yieldparam err [StandardError] error object if request failed
|
575
|
-
#
|
576
|
-
# @return [Google::Apis::GenomicsV1beta2::CallSet]
|
577
|
-
#
|
578
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
579
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
580
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
581
|
-
def create_call_set(call_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
582
|
-
path = 'callsets'
|
583
|
-
command = make_simple_command(:post, path, options)
|
584
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
|
585
|
-
command.request_object = call_set_object
|
586
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
|
587
|
-
command.response_class = Google::Apis::GenomicsV1beta2::CallSet
|
588
|
-
command.query['fields'] = fields unless fields.nil?
|
589
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
590
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
591
|
-
execute_or_queue_command(command, &block)
|
592
|
-
end
|
593
|
-
|
594
|
-
# Deletes a call set.
|
595
|
-
# @param [String] call_set_id
|
596
|
-
# The ID of the call set to be deleted.
|
597
|
-
# @param [String] fields
|
598
|
-
# Selector specifying which fields to include in a partial response.
|
599
|
-
# @param [String] quota_user
|
600
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
601
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
602
|
-
# Overrides userIp if both are provided.
|
603
|
-
# @param [String] user_ip
|
604
|
-
# IP address of the site where the request originates. Use this if you want to
|
605
|
-
# enforce per-user limits.
|
606
|
-
# @param [Google::Apis::RequestOptions] options
|
607
|
-
# Request-specific options
|
608
|
-
#
|
609
|
-
# @yield [result, err] Result & error if block supplied
|
610
|
-
# @yieldparam result [NilClass] No result returned for this method
|
611
|
-
# @yieldparam err [StandardError] error object if request failed
|
612
|
-
#
|
613
|
-
# @return [void]
|
614
|
-
#
|
615
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
616
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
617
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
618
|
-
def delete_call_set(call_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
619
|
-
path = 'callsets/{callSetId}'
|
620
|
-
command = make_simple_command(:delete, path, options)
|
621
|
-
command.params['callSetId'] = call_set_id unless call_set_id.nil?
|
622
|
-
command.query['fields'] = fields unless fields.nil?
|
623
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
624
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
625
|
-
execute_or_queue_command(command, &block)
|
626
|
-
end
|
627
|
-
|
628
|
-
# Gets a call set by ID.
|
629
|
-
# @param [String] call_set_id
|
630
|
-
# The ID of the call set.
|
631
|
-
# @param [String] fields
|
632
|
-
# Selector specifying which fields to include in a partial response.
|
633
|
-
# @param [String] quota_user
|
634
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
635
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
636
|
-
# Overrides userIp if both are provided.
|
637
|
-
# @param [String] user_ip
|
638
|
-
# IP address of the site where the request originates. Use this if you want to
|
639
|
-
# enforce per-user limits.
|
640
|
-
# @param [Google::Apis::RequestOptions] options
|
641
|
-
# Request-specific options
|
642
|
-
#
|
643
|
-
# @yield [result, err] Result & error if block supplied
|
644
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
|
645
|
-
# @yieldparam err [StandardError] error object if request failed
|
646
|
-
#
|
647
|
-
# @return [Google::Apis::GenomicsV1beta2::CallSet]
|
648
|
-
#
|
649
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
650
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
651
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
652
|
-
def get_call_set(call_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
653
|
-
path = 'callsets/{callSetId}'
|
654
|
-
command = make_simple_command(:get, path, options)
|
655
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
|
656
|
-
command.response_class = Google::Apis::GenomicsV1beta2::CallSet
|
657
|
-
command.params['callSetId'] = call_set_id unless call_set_id.nil?
|
658
|
-
command.query['fields'] = fields unless fields.nil?
|
659
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
660
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
661
|
-
execute_or_queue_command(command, &block)
|
662
|
-
end
|
663
|
-
|
664
|
-
# Updates a call set. This method supports patch semantics.
|
665
|
-
# @param [String] call_set_id
|
666
|
-
# The ID of the call set to be updated.
|
667
|
-
# @param [Google::Apis::GenomicsV1beta2::CallSet] call_set_object
|
668
|
-
# @param [String] fields
|
669
|
-
# Selector specifying which fields to include in a partial response.
|
670
|
-
# @param [String] quota_user
|
671
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
672
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
673
|
-
# Overrides userIp if both are provided.
|
674
|
-
# @param [String] user_ip
|
675
|
-
# IP address of the site where the request originates. Use this if you want to
|
676
|
-
# enforce per-user limits.
|
677
|
-
# @param [Google::Apis::RequestOptions] options
|
678
|
-
# Request-specific options
|
679
|
-
#
|
680
|
-
# @yield [result, err] Result & error if block supplied
|
681
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
|
682
|
-
# @yieldparam err [StandardError] error object if request failed
|
683
|
-
#
|
684
|
-
# @return [Google::Apis::GenomicsV1beta2::CallSet]
|
685
|
-
#
|
686
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
687
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
688
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
689
|
-
def patch_call_set(call_set_id, call_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
690
|
-
path = 'callsets/{callSetId}'
|
691
|
-
command = make_simple_command(:patch, path, options)
|
692
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
|
693
|
-
command.request_object = call_set_object
|
694
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
|
695
|
-
command.response_class = Google::Apis::GenomicsV1beta2::CallSet
|
696
|
-
command.params['callSetId'] = call_set_id unless call_set_id.nil?
|
697
|
-
command.query['fields'] = fields unless fields.nil?
|
698
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
699
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
700
|
-
execute_or_queue_command(command, &block)
|
701
|
-
end
|
702
|
-
|
703
|
-
# Gets a list of call sets matching the criteria.
|
704
|
-
# Implements GlobalAllianceApi.searchCallSets.
|
705
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchCallSetsRequest] search_call_sets_request_object
|
706
|
-
# @param [String] fields
|
707
|
-
# Selector specifying which fields to include in a partial response.
|
708
|
-
# @param [String] quota_user
|
709
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
710
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
711
|
-
# Overrides userIp if both are provided.
|
712
|
-
# @param [String] user_ip
|
713
|
-
# IP address of the site where the request originates. Use this if you want to
|
714
|
-
# enforce per-user limits.
|
715
|
-
# @param [Google::Apis::RequestOptions] options
|
716
|
-
# Request-specific options
|
717
|
-
#
|
718
|
-
# @yield [result, err] Result & error if block supplied
|
719
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchCallSetsResponse] parsed result object
|
720
|
-
# @yieldparam err [StandardError] error object if request failed
|
721
|
-
#
|
722
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchCallSetsResponse]
|
723
|
-
#
|
724
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
725
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
726
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
727
|
-
def search_call_sets(search_call_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
728
|
-
path = 'callsets/search'
|
729
|
-
command = make_simple_command(:post, path, options)
|
730
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchCallSetsRequest::Representation
|
731
|
-
command.request_object = search_call_sets_request_object
|
732
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchCallSetsResponse::Representation
|
733
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchCallSetsResponse
|
734
|
-
command.query['fields'] = fields unless fields.nil?
|
735
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
736
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
737
|
-
execute_or_queue_command(command, &block)
|
738
|
-
end
|
739
|
-
|
740
|
-
# Updates a call set.
|
741
|
-
# @param [String] call_set_id
|
742
|
-
# The ID of the call set to be updated.
|
743
|
-
# @param [Google::Apis::GenomicsV1beta2::CallSet] call_set_object
|
744
|
-
# @param [String] fields
|
745
|
-
# Selector specifying which fields to include in a partial response.
|
746
|
-
# @param [String] quota_user
|
747
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
748
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
749
|
-
# Overrides userIp if both are provided.
|
750
|
-
# @param [String] user_ip
|
751
|
-
# IP address of the site where the request originates. Use this if you want to
|
752
|
-
# enforce per-user limits.
|
753
|
-
# @param [Google::Apis::RequestOptions] options
|
754
|
-
# Request-specific options
|
755
|
-
#
|
756
|
-
# @yield [result, err] Result & error if block supplied
|
757
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::CallSet] parsed result object
|
758
|
-
# @yieldparam err [StandardError] error object if request failed
|
759
|
-
#
|
760
|
-
# @return [Google::Apis::GenomicsV1beta2::CallSet]
|
761
|
-
#
|
762
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
763
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
764
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
765
|
-
def update_call_set(call_set_id, call_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
766
|
-
path = 'callsets/{callSetId}'
|
767
|
-
command = make_simple_command(:put, path, options)
|
768
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
|
769
|
-
command.request_object = call_set_object
|
770
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::CallSet::Representation
|
771
|
-
command.response_class = Google::Apis::GenomicsV1beta2::CallSet
|
772
|
-
command.params['callSetId'] = call_set_id unless call_set_id.nil?
|
773
|
-
command.query['fields'] = fields unless fields.nil?
|
774
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
775
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
776
|
-
execute_or_queue_command(command, &block)
|
777
|
-
end
|
778
|
-
|
779
|
-
# Creates a new dataset.
|
780
|
-
# @param [Google::Apis::GenomicsV1beta2::Dataset] dataset_object
|
781
|
-
# @param [String] fields
|
782
|
-
# Selector specifying which fields to include in a partial response.
|
783
|
-
# @param [String] quota_user
|
784
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
785
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
786
|
-
# Overrides userIp if both are provided.
|
787
|
-
# @param [String] user_ip
|
788
|
-
# IP address of the site where the request originates. Use this if you want to
|
789
|
-
# enforce per-user limits.
|
790
|
-
# @param [Google::Apis::RequestOptions] options
|
791
|
-
# Request-specific options
|
792
|
-
#
|
793
|
-
# @yield [result, err] Result & error if block supplied
|
794
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
|
795
|
-
# @yieldparam err [StandardError] error object if request failed
|
796
|
-
#
|
797
|
-
# @return [Google::Apis::GenomicsV1beta2::Dataset]
|
798
|
-
#
|
799
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
800
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
801
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
802
|
-
def create_dataset(dataset_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
803
|
-
path = 'datasets'
|
804
|
-
command = make_simple_command(:post, path, options)
|
805
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
806
|
-
command.request_object = dataset_object
|
807
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
808
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Dataset
|
809
|
-
command.query['fields'] = fields unless fields.nil?
|
810
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
811
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
812
|
-
execute_or_queue_command(command, &block)
|
813
|
-
end
|
814
|
-
|
815
|
-
# Deletes a dataset.
|
816
|
-
# @param [String] dataset_id
|
817
|
-
# The ID of the dataset to be deleted.
|
818
|
-
# @param [String] fields
|
819
|
-
# Selector specifying which fields to include in a partial response.
|
820
|
-
# @param [String] quota_user
|
821
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
822
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
823
|
-
# Overrides userIp if both are provided.
|
824
|
-
# @param [String] user_ip
|
825
|
-
# IP address of the site where the request originates. Use this if you want to
|
826
|
-
# enforce per-user limits.
|
827
|
-
# @param [Google::Apis::RequestOptions] options
|
828
|
-
# Request-specific options
|
829
|
-
#
|
830
|
-
# @yield [result, err] Result & error if block supplied
|
831
|
-
# @yieldparam result [NilClass] No result returned for this method
|
832
|
-
# @yieldparam err [StandardError] error object if request failed
|
833
|
-
#
|
834
|
-
# @return [void]
|
835
|
-
#
|
836
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
837
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
838
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
839
|
-
def delete_dataset(dataset_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
840
|
-
path = 'datasets/{datasetId}'
|
841
|
-
command = make_simple_command(:delete, path, options)
|
842
|
-
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
843
|
-
command.query['fields'] = fields unless fields.nil?
|
844
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
845
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
846
|
-
execute_or_queue_command(command, &block)
|
847
|
-
end
|
848
|
-
|
849
|
-
# Gets a dataset by ID.
|
850
|
-
# @param [String] dataset_id
|
851
|
-
# The ID of the dataset.
|
852
|
-
# @param [String] fields
|
853
|
-
# Selector specifying which fields to include in a partial response.
|
854
|
-
# @param [String] quota_user
|
855
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
856
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
857
|
-
# Overrides userIp if both are provided.
|
858
|
-
# @param [String] user_ip
|
859
|
-
# IP address of the site where the request originates. Use this if you want to
|
860
|
-
# enforce per-user limits.
|
861
|
-
# @param [Google::Apis::RequestOptions] options
|
862
|
-
# Request-specific options
|
863
|
-
#
|
864
|
-
# @yield [result, err] Result & error if block supplied
|
865
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
|
866
|
-
# @yieldparam err [StandardError] error object if request failed
|
867
|
-
#
|
868
|
-
# @return [Google::Apis::GenomicsV1beta2::Dataset]
|
869
|
-
#
|
870
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
871
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
872
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
873
|
-
def get_dataset(dataset_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
874
|
-
path = 'datasets/{datasetId}'
|
875
|
-
command = make_simple_command(:get, path, options)
|
876
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
877
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Dataset
|
878
|
-
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
879
|
-
command.query['fields'] = fields unless fields.nil?
|
880
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
881
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
882
|
-
execute_or_queue_command(command, &block)
|
883
|
-
end
|
884
|
-
|
885
|
-
# Lists datasets within a project.
|
886
|
-
# @param [Fixnum] page_size
|
887
|
-
# The maximum number of results returned by this request. If unspecified,
|
888
|
-
# defaults to 50.
|
889
|
-
# @param [String] page_token
|
890
|
-
# The continuation token, which is used to page through large result sets. To
|
891
|
-
# get the next page of results, set this parameter to the value of nextPageToken
|
892
|
-
# from the previous response.
|
893
|
-
# @param [String] project_number
|
894
|
-
# Required. The project to list datasets for.
|
895
|
-
# @param [String] fields
|
896
|
-
# Selector specifying which fields to include in a partial response.
|
897
|
-
# @param [String] quota_user
|
898
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
899
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
900
|
-
# Overrides userIp if both are provided.
|
901
|
-
# @param [String] user_ip
|
902
|
-
# IP address of the site where the request originates. Use this if you want to
|
903
|
-
# enforce per-user limits.
|
904
|
-
# @param [Google::Apis::RequestOptions] options
|
905
|
-
# Request-specific options
|
906
|
-
#
|
907
|
-
# @yield [result, err] Result & error if block supplied
|
908
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ListDatasetsResponse] parsed result object
|
909
|
-
# @yieldparam err [StandardError] error object if request failed
|
910
|
-
#
|
911
|
-
# @return [Google::Apis::GenomicsV1beta2::ListDatasetsResponse]
|
912
|
-
#
|
913
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
914
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
915
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
916
|
-
def list_datasets(page_size: nil, page_token: nil, project_number: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
917
|
-
path = 'datasets'
|
918
|
-
command = make_simple_command(:get, path, options)
|
919
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ListDatasetsResponse::Representation
|
920
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ListDatasetsResponse
|
921
|
-
command.query['pageSize'] = page_size unless page_size.nil?
|
922
|
-
command.query['pageToken'] = page_token unless page_token.nil?
|
923
|
-
command.query['projectNumber'] = project_number unless project_number.nil?
|
924
|
-
command.query['fields'] = fields unless fields.nil?
|
925
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
926
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
927
|
-
execute_or_queue_command(command, &block)
|
928
|
-
end
|
929
|
-
|
930
|
-
# Updates a dataset. This method supports patch semantics.
|
931
|
-
# @param [String] dataset_id
|
932
|
-
# The ID of the dataset to be updated.
|
933
|
-
# @param [Google::Apis::GenomicsV1beta2::Dataset] dataset_object
|
934
|
-
# @param [String] fields
|
935
|
-
# Selector specifying which fields to include in a partial response.
|
936
|
-
# @param [String] quota_user
|
937
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
938
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
939
|
-
# Overrides userIp if both are provided.
|
940
|
-
# @param [String] user_ip
|
941
|
-
# IP address of the site where the request originates. Use this if you want to
|
942
|
-
# enforce per-user limits.
|
943
|
-
# @param [Google::Apis::RequestOptions] options
|
944
|
-
# Request-specific options
|
945
|
-
#
|
946
|
-
# @yield [result, err] Result & error if block supplied
|
947
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
|
948
|
-
# @yieldparam err [StandardError] error object if request failed
|
949
|
-
#
|
950
|
-
# @return [Google::Apis::GenomicsV1beta2::Dataset]
|
951
|
-
#
|
952
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
953
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
954
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
955
|
-
def patch_dataset(dataset_id, dataset_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
956
|
-
path = 'datasets/{datasetId}'
|
957
|
-
command = make_simple_command(:patch, path, options)
|
958
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
959
|
-
command.request_object = dataset_object
|
960
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
961
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Dataset
|
962
|
-
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
963
|
-
command.query['fields'] = fields unless fields.nil?
|
964
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
965
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
966
|
-
execute_or_queue_command(command, &block)
|
967
|
-
end
|
968
|
-
|
969
|
-
# Undeletes a dataset by restoring a dataset which was deleted via this API.
|
970
|
-
# This operation is only possible for a week after the deletion occurred.
|
971
|
-
# @param [String] dataset_id
|
972
|
-
# The ID of the dataset to be undeleted.
|
973
|
-
# @param [String] fields
|
974
|
-
# Selector specifying which fields to include in a partial response.
|
975
|
-
# @param [String] quota_user
|
976
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
977
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
978
|
-
# Overrides userIp if both are provided.
|
979
|
-
# @param [String] user_ip
|
980
|
-
# IP address of the site where the request originates. Use this if you want to
|
981
|
-
# enforce per-user limits.
|
982
|
-
# @param [Google::Apis::RequestOptions] options
|
983
|
-
# Request-specific options
|
984
|
-
#
|
985
|
-
# @yield [result, err] Result & error if block supplied
|
986
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
|
987
|
-
# @yieldparam err [StandardError] error object if request failed
|
988
|
-
#
|
989
|
-
# @return [Google::Apis::GenomicsV1beta2::Dataset]
|
990
|
-
#
|
991
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
992
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
993
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
994
|
-
def undelete_dataset(dataset_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
995
|
-
path = 'datasets/{datasetId}/undelete'
|
996
|
-
command = make_simple_command(:post, path, options)
|
997
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
998
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Dataset
|
999
|
-
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
1000
|
-
command.query['fields'] = fields unless fields.nil?
|
1001
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1002
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1003
|
-
execute_or_queue_command(command, &block)
|
1004
|
-
end
|
1005
|
-
|
1006
|
-
# Updates a dataset.
|
1007
|
-
# @param [String] dataset_id
|
1008
|
-
# The ID of the dataset to be updated.
|
1009
|
-
# @param [Google::Apis::GenomicsV1beta2::Dataset] dataset_object
|
1010
|
-
# @param [String] fields
|
1011
|
-
# Selector specifying which fields to include in a partial response.
|
1012
|
-
# @param [String] quota_user
|
1013
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1014
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1015
|
-
# Overrides userIp if both are provided.
|
1016
|
-
# @param [String] user_ip
|
1017
|
-
# IP address of the site where the request originates. Use this if you want to
|
1018
|
-
# enforce per-user limits.
|
1019
|
-
# @param [Google::Apis::RequestOptions] options
|
1020
|
-
# Request-specific options
|
1021
|
-
#
|
1022
|
-
# @yield [result, err] Result & error if block supplied
|
1023
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Dataset] parsed result object
|
1024
|
-
# @yieldparam err [StandardError] error object if request failed
|
1025
|
-
#
|
1026
|
-
# @return [Google::Apis::GenomicsV1beta2::Dataset]
|
1027
|
-
#
|
1028
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1029
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1030
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1031
|
-
def update_dataset(dataset_id, dataset_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1032
|
-
path = 'datasets/{datasetId}'
|
1033
|
-
command = make_simple_command(:put, path, options)
|
1034
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
1035
|
-
command.request_object = dataset_object
|
1036
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Dataset::Representation
|
1037
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Dataset
|
1038
|
-
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
1039
|
-
command.query['fields'] = fields unless fields.nil?
|
1040
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1041
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1042
|
-
execute_or_queue_command(command, &block)
|
1043
|
-
end
|
1044
|
-
|
1045
|
-
# Creates and asynchronously runs an ad-hoc job. This is an experimental call
|
1046
|
-
# and may be removed or changed at any time.
|
1047
|
-
# @param [Google::Apis::GenomicsV1beta2::ExperimentalCreateJobRequest] experimental_create_job_request_object
|
1048
|
-
# @param [String] fields
|
1049
|
-
# Selector specifying which fields to include in a partial response.
|
1050
|
-
# @param [String] quota_user
|
1051
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1052
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1053
|
-
# Overrides userIp if both are provided.
|
1054
|
-
# @param [String] user_ip
|
1055
|
-
# IP address of the site where the request originates. Use this if you want to
|
1056
|
-
# enforce per-user limits.
|
1057
|
-
# @param [Google::Apis::RequestOptions] options
|
1058
|
-
# Request-specific options
|
1059
|
-
#
|
1060
|
-
# @yield [result, err] Result & error if block supplied
|
1061
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse] parsed result object
|
1062
|
-
# @yieldparam err [StandardError] error object if request failed
|
1063
|
-
#
|
1064
|
-
# @return [Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse]
|
1065
|
-
#
|
1066
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1067
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1068
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1069
|
-
def create_experimental_job(experimental_create_job_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1070
|
-
path = 'experimental/jobs/create'
|
1071
|
-
command = make_simple_command(:post, path, options)
|
1072
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::ExperimentalCreateJobRequest::Representation
|
1073
|
-
command.request_object = experimental_create_job_request_object
|
1074
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse::Representation
|
1075
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ExperimentalCreateJobResponse
|
1076
|
-
command.query['fields'] = fields unless fields.nil?
|
1077
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1078
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1079
|
-
execute_or_queue_command(command, &block)
|
1080
|
-
end
|
1081
|
-
|
1082
|
-
# Cancels a job by ID. Note that it is possible for partial results to be
|
1083
|
-
# generated and stored for cancelled jobs.
|
1084
|
-
# @param [String] job_id
|
1085
|
-
# Required. The ID of the job.
|
1086
|
-
# @param [String] fields
|
1087
|
-
# Selector specifying which fields to include in a partial response.
|
1088
|
-
# @param [String] quota_user
|
1089
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1090
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1091
|
-
# Overrides userIp if both are provided.
|
1092
|
-
# @param [String] user_ip
|
1093
|
-
# IP address of the site where the request originates. Use this if you want to
|
1094
|
-
# enforce per-user limits.
|
1095
|
-
# @param [Google::Apis::RequestOptions] options
|
1096
|
-
# Request-specific options
|
1097
|
-
#
|
1098
|
-
# @yield [result, err] Result & error if block supplied
|
1099
|
-
# @yieldparam result [NilClass] No result returned for this method
|
1100
|
-
# @yieldparam err [StandardError] error object if request failed
|
1101
|
-
#
|
1102
|
-
# @return [void]
|
1103
|
-
#
|
1104
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1105
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1106
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1107
|
-
def cancel_job(job_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1108
|
-
path = 'jobs/{jobId}/cancel'
|
1109
|
-
command = make_simple_command(:post, path, options)
|
1110
|
-
command.params['jobId'] = job_id unless job_id.nil?
|
1111
|
-
command.query['fields'] = fields unless fields.nil?
|
1112
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1113
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1114
|
-
execute_or_queue_command(command, &block)
|
1115
|
-
end
|
1116
|
-
|
1117
|
-
# Gets a job by ID.
|
1118
|
-
# @param [String] job_id
|
1119
|
-
# Required. The ID of the job.
|
1120
|
-
# @param [String] fields
|
1121
|
-
# Selector specifying which fields to include in a partial response.
|
1122
|
-
# @param [String] quota_user
|
1123
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1124
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1125
|
-
# Overrides userIp if both are provided.
|
1126
|
-
# @param [String] user_ip
|
1127
|
-
# IP address of the site where the request originates. Use this if you want to
|
1128
|
-
# enforce per-user limits.
|
1129
|
-
# @param [Google::Apis::RequestOptions] options
|
1130
|
-
# Request-specific options
|
1131
|
-
#
|
1132
|
-
# @yield [result, err] Result & error if block supplied
|
1133
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Job] parsed result object
|
1134
|
-
# @yieldparam err [StandardError] error object if request failed
|
1135
|
-
#
|
1136
|
-
# @return [Google::Apis::GenomicsV1beta2::Job]
|
1137
|
-
#
|
1138
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1139
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1140
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1141
|
-
def get_job(job_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1142
|
-
path = 'jobs/{jobId}'
|
1143
|
-
command = make_simple_command(:get, path, options)
|
1144
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Job::Representation
|
1145
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Job
|
1146
|
-
command.params['jobId'] = job_id unless job_id.nil?
|
1147
|
-
command.query['fields'] = fields unless fields.nil?
|
1148
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1149
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1150
|
-
execute_or_queue_command(command, &block)
|
1151
|
-
end
|
1152
|
-
|
1153
|
-
# Gets a list of jobs matching the criteria.
|
1154
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchJobsRequest] search_jobs_request_object
|
1155
|
-
# @param [String] fields
|
1156
|
-
# Selector specifying which fields to include in a partial response.
|
1157
|
-
# @param [String] quota_user
|
1158
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1159
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1160
|
-
# Overrides userIp if both are provided.
|
1161
|
-
# @param [String] user_ip
|
1162
|
-
# IP address of the site where the request originates. Use this if you want to
|
1163
|
-
# enforce per-user limits.
|
1164
|
-
# @param [Google::Apis::RequestOptions] options
|
1165
|
-
# Request-specific options
|
1166
|
-
#
|
1167
|
-
# @yield [result, err] Result & error if block supplied
|
1168
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchJobsResponse] parsed result object
|
1169
|
-
# @yieldparam err [StandardError] error object if request failed
|
1170
|
-
#
|
1171
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchJobsResponse]
|
1172
|
-
#
|
1173
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1174
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1175
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1176
|
-
def search_jobs(search_jobs_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1177
|
-
path = 'jobs/search'
|
1178
|
-
command = make_simple_command(:post, path, options)
|
1179
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchJobsRequest::Representation
|
1180
|
-
command.request_object = search_jobs_request_object
|
1181
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchJobsResponse::Representation
|
1182
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchJobsResponse
|
1183
|
-
command.query['fields'] = fields unless fields.nil?
|
1184
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1185
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1186
|
-
execute_or_queue_command(command, &block)
|
1187
|
-
end
|
1188
|
-
|
1189
|
-
# Aligns read data from existing read group sets or files from Google Cloud
|
1190
|
-
# Storage. See the alignment and variant calling documentation for more details.
|
1191
|
-
# @param [Google::Apis::GenomicsV1beta2::AlignReadGroupSetsRequest] align_read_group_sets_request_object
|
1192
|
-
# @param [String] fields
|
1193
|
-
# Selector specifying which fields to include in a partial response.
|
1194
|
-
# @param [String] quota_user
|
1195
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1196
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1197
|
-
# Overrides userIp if both are provided.
|
1198
|
-
# @param [String] user_ip
|
1199
|
-
# IP address of the site where the request originates. Use this if you want to
|
1200
|
-
# enforce per-user limits.
|
1201
|
-
# @param [Google::Apis::RequestOptions] options
|
1202
|
-
# Request-specific options
|
1203
|
-
#
|
1204
|
-
# @yield [result, err] Result & error if block supplied
|
1205
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse] parsed result object
|
1206
|
-
# @yieldparam err [StandardError] error object if request failed
|
1207
|
-
#
|
1208
|
-
# @return [Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse]
|
1209
|
-
#
|
1210
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1211
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1212
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1213
|
-
def align_read_group_sets(align_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1214
|
-
path = 'readgroupsets/align'
|
1215
|
-
command = make_simple_command(:post, path, options)
|
1216
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::AlignReadGroupSetsRequest::Representation
|
1217
|
-
command.request_object = align_read_group_sets_request_object
|
1218
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse::Representation
|
1219
|
-
command.response_class = Google::Apis::GenomicsV1beta2::AlignReadGroupSetsResponse
|
1220
|
-
command.query['fields'] = fields unless fields.nil?
|
1221
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1222
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1223
|
-
execute_or_queue_command(command, &block)
|
1224
|
-
end
|
1225
|
-
|
1226
|
-
# Calls variants on read data from existing read group sets or files from Google
|
1227
|
-
# Cloud Storage. See the alignment and variant calling documentation for more
|
1228
|
-
# details.
|
1229
|
-
# @param [Google::Apis::GenomicsV1beta2::CallReadGroupSetsRequest] call_read_group_sets_request_object
|
1230
|
-
# @param [String] fields
|
1231
|
-
# Selector specifying which fields to include in a partial response.
|
1232
|
-
# @param [String] quota_user
|
1233
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1234
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1235
|
-
# Overrides userIp if both are provided.
|
1236
|
-
# @param [String] user_ip
|
1237
|
-
# IP address of the site where the request originates. Use this if you want to
|
1238
|
-
# enforce per-user limits.
|
1239
|
-
# @param [Google::Apis::RequestOptions] options
|
1240
|
-
# Request-specific options
|
1241
|
-
#
|
1242
|
-
# @yield [result, err] Result & error if block supplied
|
1243
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse] parsed result object
|
1244
|
-
# @yieldparam err [StandardError] error object if request failed
|
1245
|
-
#
|
1246
|
-
# @return [Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse]
|
1247
|
-
#
|
1248
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1249
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1250
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1251
|
-
def call_read_group_sets(call_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1252
|
-
path = 'readgroupsets/call'
|
1253
|
-
command = make_simple_command(:post, path, options)
|
1254
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::CallReadGroupSetsRequest::Representation
|
1255
|
-
command.request_object = call_read_group_sets_request_object
|
1256
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse::Representation
|
1257
|
-
command.response_class = Google::Apis::GenomicsV1beta2::CallReadGroupSetsResponse
|
1258
|
-
command.query['fields'] = fields unless fields.nil?
|
1259
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1260
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1261
|
-
execute_or_queue_command(command, &block)
|
1262
|
-
end
|
1263
|
-
|
1264
|
-
# Deletes a read group set.
|
1265
|
-
# @param [String] read_group_set_id
|
1266
|
-
# The ID of the read group set to be deleted. The caller must have WRITE
|
1267
|
-
# permissions to the dataset associated with this read group set.
|
1268
|
-
# @param [String] fields
|
1269
|
-
# Selector specifying which fields to include in a partial response.
|
1270
|
-
# @param [String] quota_user
|
1271
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1272
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1273
|
-
# Overrides userIp if both are provided.
|
1274
|
-
# @param [String] user_ip
|
1275
|
-
# IP address of the site where the request originates. Use this if you want to
|
1276
|
-
# enforce per-user limits.
|
1277
|
-
# @param [Google::Apis::RequestOptions] options
|
1278
|
-
# Request-specific options
|
1279
|
-
#
|
1280
|
-
# @yield [result, err] Result & error if block supplied
|
1281
|
-
# @yieldparam result [NilClass] No result returned for this method
|
1282
|
-
# @yieldparam err [StandardError] error object if request failed
|
1283
|
-
#
|
1284
|
-
# @return [void]
|
1285
|
-
#
|
1286
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1287
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1288
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1289
|
-
def delete_read_group_set(read_group_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1290
|
-
path = 'readgroupsets/{readGroupSetId}'
|
1291
|
-
command = make_simple_command(:delete, path, options)
|
1292
|
-
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
1293
|
-
command.query['fields'] = fields unless fields.nil?
|
1294
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1295
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1296
|
-
execute_or_queue_command(command, &block)
|
1297
|
-
end
|
1298
|
-
|
1299
|
-
# Exports read group sets to a BAM file in Google Cloud Storage.
|
1300
|
-
# Note that currently there may be some differences between exported BAM files
|
1301
|
-
# and the original BAM file at the time of import. In particular, comments in
|
1302
|
-
# the input file header will not be preserved, some custom tags will be
|
1303
|
-
# converted to strings, and original reference sequence order is not necessarily
|
1304
|
-
# preserved.
|
1305
|
-
# @param [Google::Apis::GenomicsV1beta2::ExportReadGroupSetsRequest] export_read_group_sets_request_object
|
1306
|
-
# @param [String] fields
|
1307
|
-
# Selector specifying which fields to include in a partial response.
|
1308
|
-
# @param [String] quota_user
|
1309
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1310
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1311
|
-
# Overrides userIp if both are provided.
|
1312
|
-
# @param [String] user_ip
|
1313
|
-
# IP address of the site where the request originates. Use this if you want to
|
1314
|
-
# enforce per-user limits.
|
1315
|
-
# @param [Google::Apis::RequestOptions] options
|
1316
|
-
# Request-specific options
|
1317
|
-
#
|
1318
|
-
# @yield [result, err] Result & error if block supplied
|
1319
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse] parsed result object
|
1320
|
-
# @yieldparam err [StandardError] error object if request failed
|
1321
|
-
#
|
1322
|
-
# @return [Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse]
|
1323
|
-
#
|
1324
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1325
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1326
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1327
|
-
def export_read_group_sets(export_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1328
|
-
path = 'readgroupsets/export'
|
1329
|
-
command = make_simple_command(:post, path, options)
|
1330
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::ExportReadGroupSetsRequest::Representation
|
1331
|
-
command.request_object = export_read_group_sets_request_object
|
1332
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse::Representation
|
1333
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ExportReadGroupSetsResponse
|
1334
|
-
command.query['fields'] = fields unless fields.nil?
|
1335
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1336
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1337
|
-
execute_or_queue_command(command, &block)
|
1338
|
-
end
|
1339
|
-
|
1340
|
-
# Gets a read group set by ID.
|
1341
|
-
# @param [String] read_group_set_id
|
1342
|
-
# The ID of the read group set.
|
1343
|
-
# @param [String] fields
|
1344
|
-
# Selector specifying which fields to include in a partial response.
|
1345
|
-
# @param [String] quota_user
|
1346
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1347
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1348
|
-
# Overrides userIp if both are provided.
|
1349
|
-
# @param [String] user_ip
|
1350
|
-
# IP address of the site where the request originates. Use this if you want to
|
1351
|
-
# enforce per-user limits.
|
1352
|
-
# @param [Google::Apis::RequestOptions] options
|
1353
|
-
# Request-specific options
|
1354
|
-
#
|
1355
|
-
# @yield [result, err] Result & error if block supplied
|
1356
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ReadGroupSet] parsed result object
|
1357
|
-
# @yieldparam err [StandardError] error object if request failed
|
1358
|
-
#
|
1359
|
-
# @return [Google::Apis::GenomicsV1beta2::ReadGroupSet]
|
1360
|
-
#
|
1361
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1362
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1363
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1364
|
-
def get_read_group_set(read_group_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1365
|
-
path = 'readgroupsets/{readGroupSetId}'
|
1366
|
-
command = make_simple_command(:get, path, options)
|
1367
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
|
1368
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ReadGroupSet
|
1369
|
-
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
1370
|
-
command.query['fields'] = fields unless fields.nil?
|
1371
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1372
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1373
|
-
execute_or_queue_command(command, &block)
|
1374
|
-
end
|
1375
|
-
|
1376
|
-
# Creates read group sets by asynchronously importing the provided information.
|
1377
|
-
# Note that currently comments in the input file header are not imported and
|
1378
|
-
# some custom tags will be converted to strings, rather than preserving tag
|
1379
|
-
# types. The caller must have WRITE permissions to the dataset.
|
1380
|
-
# @param [Google::Apis::GenomicsV1beta2::ImportReadGroupSetsRequest] import_read_group_sets_request_object
|
1381
|
-
# @param [String] fields
|
1382
|
-
# Selector specifying which fields to include in a partial response.
|
1383
|
-
# @param [String] quota_user
|
1384
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1385
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1386
|
-
# Overrides userIp if both are provided.
|
1387
|
-
# @param [String] user_ip
|
1388
|
-
# IP address of the site where the request originates. Use this if you want to
|
1389
|
-
# enforce per-user limits.
|
1390
|
-
# @param [Google::Apis::RequestOptions] options
|
1391
|
-
# Request-specific options
|
1392
|
-
#
|
1393
|
-
# @yield [result, err] Result & error if block supplied
|
1394
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse] parsed result object
|
1395
|
-
# @yieldparam err [StandardError] error object if request failed
|
1396
|
-
#
|
1397
|
-
# @return [Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse]
|
1398
|
-
#
|
1399
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1400
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1401
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1402
|
-
def import_read_group_sets(import_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1403
|
-
path = 'readgroupsets/import'
|
1404
|
-
command = make_simple_command(:post, path, options)
|
1405
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::ImportReadGroupSetsRequest::Representation
|
1406
|
-
command.request_object = import_read_group_sets_request_object
|
1407
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse::Representation
|
1408
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ImportReadGroupSetsResponse
|
1409
|
-
command.query['fields'] = fields unless fields.nil?
|
1410
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1411
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1412
|
-
execute_or_queue_command(command, &block)
|
1413
|
-
end
|
1414
|
-
|
1415
|
-
# Updates a read group set. This method supports patch semantics.
|
1416
|
-
# @param [String] read_group_set_id
|
1417
|
-
# The ID of the read group set to be updated. The caller must have WRITE
|
1418
|
-
# permissions to the dataset associated with this read group set.
|
1419
|
-
# @param [Google::Apis::GenomicsV1beta2::ReadGroupSet] read_group_set_object
|
1420
|
-
# @param [String] fields
|
1421
|
-
# Selector specifying which fields to include in a partial response.
|
1422
|
-
# @param [String] quota_user
|
1423
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1424
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1425
|
-
# Overrides userIp if both are provided.
|
1426
|
-
# @param [String] user_ip
|
1427
|
-
# IP address of the site where the request originates. Use this if you want to
|
1428
|
-
# enforce per-user limits.
|
1429
|
-
# @param [Google::Apis::RequestOptions] options
|
1430
|
-
# Request-specific options
|
1431
|
-
#
|
1432
|
-
# @yield [result, err] Result & error if block supplied
|
1433
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ReadGroupSet] parsed result object
|
1434
|
-
# @yieldparam err [StandardError] error object if request failed
|
1435
|
-
#
|
1436
|
-
# @return [Google::Apis::GenomicsV1beta2::ReadGroupSet]
|
1437
|
-
#
|
1438
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1439
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1440
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1441
|
-
def patch_read_group_set(read_group_set_id, read_group_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1442
|
-
path = 'readgroupsets/{readGroupSetId}'
|
1443
|
-
command = make_simple_command(:patch, path, options)
|
1444
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
|
1445
|
-
command.request_object = read_group_set_object
|
1446
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
|
1447
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ReadGroupSet
|
1448
|
-
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
1449
|
-
command.query['fields'] = fields unless fields.nil?
|
1450
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1451
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1452
|
-
execute_or_queue_command(command, &block)
|
1453
|
-
end
|
1454
|
-
|
1455
|
-
# Searches for read group sets matching the criteria.
|
1456
|
-
# Implements GlobalAllianceApi.searchReadGroupSets.
|
1457
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchReadGroupSetsRequest] search_read_group_sets_request_object
|
1458
|
-
# @param [String] fields
|
1459
|
-
# Selector specifying which fields to include in a partial response.
|
1460
|
-
# @param [String] quota_user
|
1461
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1462
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1463
|
-
# Overrides userIp if both are provided.
|
1464
|
-
# @param [String] user_ip
|
1465
|
-
# IP address of the site where the request originates. Use this if you want to
|
1466
|
-
# enforce per-user limits.
|
1467
|
-
# @param [Google::Apis::RequestOptions] options
|
1468
|
-
# Request-specific options
|
1469
|
-
#
|
1470
|
-
# @yield [result, err] Result & error if block supplied
|
1471
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse] parsed result object
|
1472
|
-
# @yieldparam err [StandardError] error object if request failed
|
1473
|
-
#
|
1474
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse]
|
1475
|
-
#
|
1476
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1477
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1478
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1479
|
-
def search_read_group_sets(search_read_group_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1480
|
-
path = 'readgroupsets/search'
|
1481
|
-
command = make_simple_command(:post, path, options)
|
1482
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchReadGroupSetsRequest::Representation
|
1483
|
-
command.request_object = search_read_group_sets_request_object
|
1484
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse::Representation
|
1485
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchReadGroupSetsResponse
|
1486
|
-
command.query['fields'] = fields unless fields.nil?
|
1487
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1488
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1489
|
-
execute_or_queue_command(command, &block)
|
1490
|
-
end
|
1491
|
-
|
1492
|
-
# Updates a read group set.
|
1493
|
-
# @param [String] read_group_set_id
|
1494
|
-
# The ID of the read group set to be updated. The caller must have WRITE
|
1495
|
-
# permissions to the dataset associated with this read group set.
|
1496
|
-
# @param [Google::Apis::GenomicsV1beta2::ReadGroupSet] read_group_set_object
|
1497
|
-
# @param [String] fields
|
1498
|
-
# Selector specifying which fields to include in a partial response.
|
1499
|
-
# @param [String] quota_user
|
1500
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1501
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1502
|
-
# Overrides userIp if both are provided.
|
1503
|
-
# @param [String] user_ip
|
1504
|
-
# IP address of the site where the request originates. Use this if you want to
|
1505
|
-
# enforce per-user limits.
|
1506
|
-
# @param [Google::Apis::RequestOptions] options
|
1507
|
-
# Request-specific options
|
1508
|
-
#
|
1509
|
-
# @yield [result, err] Result & error if block supplied
|
1510
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ReadGroupSet] parsed result object
|
1511
|
-
# @yieldparam err [StandardError] error object if request failed
|
1512
|
-
#
|
1513
|
-
# @return [Google::Apis::GenomicsV1beta2::ReadGroupSet]
|
1514
|
-
#
|
1515
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1516
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1517
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1518
|
-
def update_read_group_set(read_group_set_id, read_group_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1519
|
-
path = 'readgroupsets/{readGroupSetId}'
|
1520
|
-
command = make_simple_command(:put, path, options)
|
1521
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
|
1522
|
-
command.request_object = read_group_set_object
|
1523
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ReadGroupSet::Representation
|
1524
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ReadGroupSet
|
1525
|
-
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
1526
|
-
command.query['fields'] = fields unless fields.nil?
|
1527
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1528
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1529
|
-
execute_or_queue_command(command, &block)
|
1530
|
-
end
|
1531
|
-
|
1532
|
-
# Lists fixed width coverage buckets for a read group set, each of which
|
1533
|
-
# correspond to a range of a reference sequence. Each bucket summarizes coverage
|
1534
|
-
# information across its corresponding genomic range.
|
1535
|
-
# Coverage is defined as the number of reads which are aligned to a given base
|
1536
|
-
# in the reference sequence. Coverage buckets are available at several
|
1537
|
-
# precomputed bucket widths, enabling retrieval of various coverage 'zoom levels'
|
1538
|
-
# . The caller must have READ permissions for the target read group set.
|
1539
|
-
# @param [String] read_group_set_id
|
1540
|
-
# Required. The ID of the read group set over which coverage is requested.
|
1541
|
-
# @param [Fixnum] page_size
|
1542
|
-
# The maximum number of results to return in a single page. If unspecified,
|
1543
|
-
# defaults to 1024. The maximum value is 2048.
|
1544
|
-
# @param [String] page_token
|
1545
|
-
# The continuation token, which is used to page through large result sets. To
|
1546
|
-
# get the next page of results, set this parameter to the value of nextPageToken
|
1547
|
-
# from the previous response.
|
1548
|
-
# @param [String] range_end
|
1549
|
-
# The end position of the range on the reference, 0-based exclusive. If
|
1550
|
-
# specified, referenceName must also be specified.
|
1551
|
-
# @param [String] range_reference_name
|
1552
|
-
# The reference sequence name, for example chr1, 1, or chrX.
|
1553
|
-
# @param [String] range_start
|
1554
|
-
# The start position of the range on the reference, 0-based inclusive. If
|
1555
|
-
# specified, referenceName must also be specified.
|
1556
|
-
# @param [String] target_bucket_width
|
1557
|
-
# The desired width of each reported coverage bucket in base pairs. This will be
|
1558
|
-
# rounded down to the nearest precomputed bucket width; the value of which is
|
1559
|
-
# returned as bucketWidth in the response. Defaults to infinity (each bucket
|
1560
|
-
# spans an entire reference sequence) or the length of the target range, if
|
1561
|
-
# specified. The smallest precomputed bucketWidth is currently 2048 base pairs;
|
1562
|
-
# this is subject to change.
|
1563
|
-
# @param [String] fields
|
1564
|
-
# Selector specifying which fields to include in a partial response.
|
1565
|
-
# @param [String] quota_user
|
1566
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1567
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1568
|
-
# Overrides userIp if both are provided.
|
1569
|
-
# @param [String] user_ip
|
1570
|
-
# IP address of the site where the request originates. Use this if you want to
|
1571
|
-
# enforce per-user limits.
|
1572
|
-
# @param [Google::Apis::RequestOptions] options
|
1573
|
-
# Request-specific options
|
1574
|
-
#
|
1575
|
-
# @yield [result, err] Result & error if block supplied
|
1576
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse] parsed result object
|
1577
|
-
# @yieldparam err [StandardError] error object if request failed
|
1578
|
-
#
|
1579
|
-
# @return [Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse]
|
1580
|
-
#
|
1581
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1582
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1583
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1584
|
-
def list_coverage_buckets(read_group_set_id, page_size: nil, page_token: nil, range_end: nil, range_reference_name: nil, range_start: nil, target_bucket_width: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1585
|
-
path = 'readgroupsets/{readGroupSetId}/coveragebuckets'
|
1586
|
-
command = make_simple_command(:get, path, options)
|
1587
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse::Representation
|
1588
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ListCoverageBucketsResponse
|
1589
|
-
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
1590
|
-
command.query['pageSize'] = page_size unless page_size.nil?
|
1591
|
-
command.query['pageToken'] = page_token unless page_token.nil?
|
1592
|
-
command.query['range.end'] = range_end unless range_end.nil?
|
1593
|
-
command.query['range.referenceName'] = range_reference_name unless range_reference_name.nil?
|
1594
|
-
command.query['range.start'] = range_start unless range_start.nil?
|
1595
|
-
command.query['targetBucketWidth'] = target_bucket_width unless target_bucket_width.nil?
|
1596
|
-
command.query['fields'] = fields unless fields.nil?
|
1597
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1598
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1599
|
-
execute_or_queue_command(command, &block)
|
1600
|
-
end
|
1601
|
-
|
1602
|
-
# Gets a list of reads for one or more read group sets. Reads search operates
|
1603
|
-
# over a genomic coordinate space of reference sequence & position defined over
|
1604
|
-
# the reference sequences to which the requested read group sets are aligned.
|
1605
|
-
# If a target positional range is specified, search returns all reads whose
|
1606
|
-
# alignment to the reference genome overlap the range. A query which specifies
|
1607
|
-
# only read group set IDs yields all reads in those read group sets, including
|
1608
|
-
# unmapped reads.
|
1609
|
-
# All reads returned (including reads on subsequent pages) are ordered by
|
1610
|
-
# genomic coordinate (reference sequence & position). Reads with equivalent
|
1611
|
-
# genomic coordinates are returned in a deterministic order.
|
1612
|
-
# Implements GlobalAllianceApi.searchReads.
|
1613
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchReadsRequest] search_reads_request_object
|
1614
|
-
# @param [String] fields
|
1615
|
-
# Selector specifying which fields to include in a partial response.
|
1616
|
-
# @param [String] quota_user
|
1617
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1618
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1619
|
-
# Overrides userIp if both are provided.
|
1620
|
-
# @param [String] user_ip
|
1621
|
-
# IP address of the site where the request originates. Use this if you want to
|
1622
|
-
# enforce per-user limits.
|
1623
|
-
# @param [Google::Apis::RequestOptions] options
|
1624
|
-
# Request-specific options
|
1625
|
-
#
|
1626
|
-
# @yield [result, err] Result & error if block supplied
|
1627
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReadsResponse] parsed result object
|
1628
|
-
# @yieldparam err [StandardError] error object if request failed
|
1629
|
-
#
|
1630
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchReadsResponse]
|
1631
|
-
#
|
1632
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1633
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1634
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1635
|
-
def search_reads(search_reads_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1636
|
-
path = 'reads/search'
|
1637
|
-
command = make_simple_command(:post, path, options)
|
1638
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchReadsRequest::Representation
|
1639
|
-
command.request_object = search_reads_request_object
|
1640
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchReadsResponse::Representation
|
1641
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchReadsResponse
|
1642
|
-
command.query['fields'] = fields unless fields.nil?
|
1643
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1644
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1645
|
-
execute_or_queue_command(command, &block)
|
1646
|
-
end
|
1647
|
-
|
1648
|
-
# Gets a reference.
|
1649
|
-
# Implements GlobalAllianceApi.getReference.
|
1650
|
-
# @param [String] reference_id
|
1651
|
-
# The ID of the reference.
|
1652
|
-
# @param [String] fields
|
1653
|
-
# Selector specifying which fields to include in a partial response.
|
1654
|
-
# @param [String] quota_user
|
1655
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1656
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1657
|
-
# Overrides userIp if both are provided.
|
1658
|
-
# @param [String] user_ip
|
1659
|
-
# IP address of the site where the request originates. Use this if you want to
|
1660
|
-
# enforce per-user limits.
|
1661
|
-
# @param [Google::Apis::RequestOptions] options
|
1662
|
-
# Request-specific options
|
1663
|
-
#
|
1664
|
-
# @yield [result, err] Result & error if block supplied
|
1665
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Reference] parsed result object
|
1666
|
-
# @yieldparam err [StandardError] error object if request failed
|
1667
|
-
#
|
1668
|
-
# @return [Google::Apis::GenomicsV1beta2::Reference]
|
1669
|
-
#
|
1670
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1671
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1672
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1673
|
-
def get_reference(reference_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1674
|
-
path = 'references/{referenceId}'
|
1675
|
-
command = make_simple_command(:get, path, options)
|
1676
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Reference::Representation
|
1677
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Reference
|
1678
|
-
command.params['referenceId'] = reference_id unless reference_id.nil?
|
1679
|
-
command.query['fields'] = fields unless fields.nil?
|
1680
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1681
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1682
|
-
execute_or_queue_command(command, &block)
|
1683
|
-
end
|
1684
|
-
|
1685
|
-
# Searches for references which match the given criteria.
|
1686
|
-
# Implements GlobalAllianceApi.searchReferences.
|
1687
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchReferencesRequest] search_references_request_object
|
1688
|
-
# @param [String] fields
|
1689
|
-
# Selector specifying which fields to include in a partial response.
|
1690
|
-
# @param [String] quota_user
|
1691
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1692
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1693
|
-
# Overrides userIp if both are provided.
|
1694
|
-
# @param [String] user_ip
|
1695
|
-
# IP address of the site where the request originates. Use this if you want to
|
1696
|
-
# enforce per-user limits.
|
1697
|
-
# @param [Google::Apis::RequestOptions] options
|
1698
|
-
# Request-specific options
|
1699
|
-
#
|
1700
|
-
# @yield [result, err] Result & error if block supplied
|
1701
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReferencesResponse] parsed result object
|
1702
|
-
# @yieldparam err [StandardError] error object if request failed
|
1703
|
-
#
|
1704
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchReferencesResponse]
|
1705
|
-
#
|
1706
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1707
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1708
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1709
|
-
def search_references(search_references_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1710
|
-
path = 'references/search'
|
1711
|
-
command = make_simple_command(:post, path, options)
|
1712
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchReferencesRequest::Representation
|
1713
|
-
command.request_object = search_references_request_object
|
1714
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchReferencesResponse::Representation
|
1715
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchReferencesResponse
|
1716
|
-
command.query['fields'] = fields unless fields.nil?
|
1717
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1718
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1719
|
-
execute_or_queue_command(command, &block)
|
1720
|
-
end
|
1721
|
-
|
1722
|
-
# Lists the bases in a reference, optionally restricted to a range.
|
1723
|
-
# Implements GlobalAllianceApi.getReferenceBases.
|
1724
|
-
# @param [String] reference_id
|
1725
|
-
# The ID of the reference.
|
1726
|
-
# @param [String] end_position
|
1727
|
-
# The end position (0-based, exclusive) of this query. Defaults to the length of
|
1728
|
-
# this reference.
|
1729
|
-
# @param [Fixnum] page_size
|
1730
|
-
# Specifies the maximum number of bases to return in a single page.
|
1731
|
-
# @param [String] page_token
|
1732
|
-
# The continuation token, which is used to page through large result sets. To
|
1733
|
-
# get the next page of results, set this parameter to the value of nextPageToken
|
1734
|
-
# from the previous response.
|
1735
|
-
# @param [String] start_position
|
1736
|
-
# The start position (0-based) of this query. Defaults to 0.
|
1737
|
-
# @param [String] fields
|
1738
|
-
# Selector specifying which fields to include in a partial response.
|
1739
|
-
# @param [String] quota_user
|
1740
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1741
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1742
|
-
# Overrides userIp if both are provided.
|
1743
|
-
# @param [String] user_ip
|
1744
|
-
# IP address of the site where the request originates. Use this if you want to
|
1745
|
-
# enforce per-user limits.
|
1746
|
-
# @param [Google::Apis::RequestOptions] options
|
1747
|
-
# Request-specific options
|
1748
|
-
#
|
1749
|
-
# @yield [result, err] Result & error if block supplied
|
1750
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ListBasesResponse] parsed result object
|
1751
|
-
# @yieldparam err [StandardError] error object if request failed
|
1752
|
-
#
|
1753
|
-
# @return [Google::Apis::GenomicsV1beta2::ListBasesResponse]
|
1754
|
-
#
|
1755
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1756
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1757
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1758
|
-
def list_reference_bases(reference_id, end_position: nil, page_size: nil, page_token: nil, start_position: nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1759
|
-
path = 'references/{referenceId}/bases'
|
1760
|
-
command = make_simple_command(:get, path, options)
|
1761
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ListBasesResponse::Representation
|
1762
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ListBasesResponse
|
1763
|
-
command.params['referenceId'] = reference_id unless reference_id.nil?
|
1764
|
-
command.query['end'] = end_position unless end_position.nil?
|
1765
|
-
command.query['pageSize'] = page_size unless page_size.nil?
|
1766
|
-
command.query['pageToken'] = page_token unless page_token.nil?
|
1767
|
-
command.query['start'] = start_position unless start_position.nil?
|
1768
|
-
command.query['fields'] = fields unless fields.nil?
|
1769
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1770
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1771
|
-
execute_or_queue_command(command, &block)
|
1772
|
-
end
|
1773
|
-
|
1774
|
-
# Gets a reference set.
|
1775
|
-
# Implements GlobalAllianceApi.getReferenceSet.
|
1776
|
-
# @param [String] reference_set_id
|
1777
|
-
# The ID of the reference set.
|
1778
|
-
# @param [String] fields
|
1779
|
-
# Selector specifying which fields to include in a partial response.
|
1780
|
-
# @param [String] quota_user
|
1781
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1782
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1783
|
-
# Overrides userIp if both are provided.
|
1784
|
-
# @param [String] user_ip
|
1785
|
-
# IP address of the site where the request originates. Use this if you want to
|
1786
|
-
# enforce per-user limits.
|
1787
|
-
# @param [Google::Apis::RequestOptions] options
|
1788
|
-
# Request-specific options
|
1789
|
-
#
|
1790
|
-
# @yield [result, err] Result & error if block supplied
|
1791
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ReferenceSet] parsed result object
|
1792
|
-
# @yieldparam err [StandardError] error object if request failed
|
1793
|
-
#
|
1794
|
-
# @return [Google::Apis::GenomicsV1beta2::ReferenceSet]
|
1795
|
-
#
|
1796
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1797
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1798
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1799
|
-
def get_reference_set(reference_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1800
|
-
path = 'referencesets/{referenceSetId}'
|
1801
|
-
command = make_simple_command(:get, path, options)
|
1802
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ReferenceSet::Representation
|
1803
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ReferenceSet
|
1804
|
-
command.params['referenceSetId'] = reference_set_id unless reference_set_id.nil?
|
1805
|
-
command.query['fields'] = fields unless fields.nil?
|
1806
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1807
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1808
|
-
execute_or_queue_command(command, &block)
|
1809
|
-
end
|
1810
|
-
|
1811
|
-
# Searches for reference sets which match the given criteria.
|
1812
|
-
# Implements GlobalAllianceApi.searchReferenceSets.
|
1813
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchReferenceSetsRequest] search_reference_sets_request_object
|
1814
|
-
# @param [String] fields
|
1815
|
-
# Selector specifying which fields to include in a partial response.
|
1816
|
-
# @param [String] quota_user
|
1817
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1818
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1819
|
-
# Overrides userIp if both are provided.
|
1820
|
-
# @param [String] user_ip
|
1821
|
-
# IP address of the site where the request originates. Use this if you want to
|
1822
|
-
# enforce per-user limits.
|
1823
|
-
# @param [Google::Apis::RequestOptions] options
|
1824
|
-
# Request-specific options
|
1825
|
-
#
|
1826
|
-
# @yield [result, err] Result & error if block supplied
|
1827
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse] parsed result object
|
1828
|
-
# @yieldparam err [StandardError] error object if request failed
|
1829
|
-
#
|
1830
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse]
|
1831
|
-
#
|
1832
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1833
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1834
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1835
|
-
def search_reference_sets(search_reference_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1836
|
-
path = 'referencesets/search'
|
1837
|
-
command = make_simple_command(:post, path, options)
|
1838
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchReferenceSetsRequest::Representation
|
1839
|
-
command.request_object = search_reference_sets_request_object
|
1840
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse::Representation
|
1841
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchReferenceSetsResponse
|
1842
|
-
command.query['fields'] = fields unless fields.nil?
|
1843
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1844
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1845
|
-
execute_or_queue_command(command, &block)
|
1846
|
-
end
|
1847
|
-
|
1848
|
-
# Creates a new variant.
|
1849
|
-
# @param [Google::Apis::GenomicsV1beta2::Variant] variant_object
|
1850
|
-
# @param [String] fields
|
1851
|
-
# Selector specifying which fields to include in a partial response.
|
1852
|
-
# @param [String] quota_user
|
1853
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1854
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1855
|
-
# Overrides userIp if both are provided.
|
1856
|
-
# @param [String] user_ip
|
1857
|
-
# IP address of the site where the request originates. Use this if you want to
|
1858
|
-
# enforce per-user limits.
|
1859
|
-
# @param [Google::Apis::RequestOptions] options
|
1860
|
-
# Request-specific options
|
1861
|
-
#
|
1862
|
-
# @yield [result, err] Result & error if block supplied
|
1863
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Variant] parsed result object
|
1864
|
-
# @yieldparam err [StandardError] error object if request failed
|
1865
|
-
#
|
1866
|
-
# @return [Google::Apis::GenomicsV1beta2::Variant]
|
1867
|
-
#
|
1868
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1869
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1870
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1871
|
-
def create_variant(variant_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1872
|
-
path = 'variants'
|
1873
|
-
command = make_simple_command(:post, path, options)
|
1874
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
|
1875
|
-
command.request_object = variant_object
|
1876
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
|
1877
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Variant
|
1878
|
-
command.query['fields'] = fields unless fields.nil?
|
1879
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1880
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1881
|
-
execute_or_queue_command(command, &block)
|
1882
|
-
end
|
1883
|
-
|
1884
|
-
# Deletes a variant.
|
1885
|
-
# @param [String] variant_id
|
1886
|
-
# The ID of the variant to be deleted.
|
1887
|
-
# @param [String] fields
|
1888
|
-
# Selector specifying which fields to include in a partial response.
|
1889
|
-
# @param [String] quota_user
|
1890
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1891
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1892
|
-
# Overrides userIp if both are provided.
|
1893
|
-
# @param [String] user_ip
|
1894
|
-
# IP address of the site where the request originates. Use this if you want to
|
1895
|
-
# enforce per-user limits.
|
1896
|
-
# @param [Google::Apis::RequestOptions] options
|
1897
|
-
# Request-specific options
|
1898
|
-
#
|
1899
|
-
# @yield [result, err] Result & error if block supplied
|
1900
|
-
# @yieldparam result [NilClass] No result returned for this method
|
1901
|
-
# @yieldparam err [StandardError] error object if request failed
|
1902
|
-
#
|
1903
|
-
# @return [void]
|
1904
|
-
#
|
1905
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1906
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1907
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1908
|
-
def delete_variant(variant_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1909
|
-
path = 'variants/{variantId}'
|
1910
|
-
command = make_simple_command(:delete, path, options)
|
1911
|
-
command.params['variantId'] = variant_id unless variant_id.nil?
|
1912
|
-
command.query['fields'] = fields unless fields.nil?
|
1913
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1914
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1915
|
-
execute_or_queue_command(command, &block)
|
1916
|
-
end
|
1917
|
-
|
1918
|
-
# Gets a variant by ID.
|
1919
|
-
# @param [String] variant_id
|
1920
|
-
# The ID of the variant.
|
1921
|
-
# @param [String] fields
|
1922
|
-
# Selector specifying which fields to include in a partial response.
|
1923
|
-
# @param [String] quota_user
|
1924
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1925
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1926
|
-
# Overrides userIp if both are provided.
|
1927
|
-
# @param [String] user_ip
|
1928
|
-
# IP address of the site where the request originates. Use this if you want to
|
1929
|
-
# enforce per-user limits.
|
1930
|
-
# @param [Google::Apis::RequestOptions] options
|
1931
|
-
# Request-specific options
|
1932
|
-
#
|
1933
|
-
# @yield [result, err] Result & error if block supplied
|
1934
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Variant] parsed result object
|
1935
|
-
# @yieldparam err [StandardError] error object if request failed
|
1936
|
-
#
|
1937
|
-
# @return [Google::Apis::GenomicsV1beta2::Variant]
|
1938
|
-
#
|
1939
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1940
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1941
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1942
|
-
def get_variant(variant_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1943
|
-
path = 'variants/{variantId}'
|
1944
|
-
command = make_simple_command(:get, path, options)
|
1945
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
|
1946
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Variant
|
1947
|
-
command.params['variantId'] = variant_id unless variant_id.nil?
|
1948
|
-
command.query['fields'] = fields unless fields.nil?
|
1949
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1950
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1951
|
-
execute_or_queue_command(command, &block)
|
1952
|
-
end
|
1953
|
-
|
1954
|
-
# Gets a list of variants matching the criteria.
|
1955
|
-
# Implements GlobalAllianceApi.searchVariants.
|
1956
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchVariantsRequest] search_variants_request_object
|
1957
|
-
# @param [String] fields
|
1958
|
-
# Selector specifying which fields to include in a partial response.
|
1959
|
-
# @param [String] quota_user
|
1960
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
1961
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1962
|
-
# Overrides userIp if both are provided.
|
1963
|
-
# @param [String] user_ip
|
1964
|
-
# IP address of the site where the request originates. Use this if you want to
|
1965
|
-
# enforce per-user limits.
|
1966
|
-
# @param [Google::Apis::RequestOptions] options
|
1967
|
-
# Request-specific options
|
1968
|
-
#
|
1969
|
-
# @yield [result, err] Result & error if block supplied
|
1970
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchVariantsResponse] parsed result object
|
1971
|
-
# @yieldparam err [StandardError] error object if request failed
|
1972
|
-
#
|
1973
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchVariantsResponse]
|
1974
|
-
#
|
1975
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1976
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1977
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1978
|
-
def search_variants(search_variants_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
1979
|
-
path = 'variants/search'
|
1980
|
-
command = make_simple_command(:post, path, options)
|
1981
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchVariantsRequest::Representation
|
1982
|
-
command.request_object = search_variants_request_object
|
1983
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchVariantsResponse::Representation
|
1984
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchVariantsResponse
|
1985
|
-
command.query['fields'] = fields unless fields.nil?
|
1986
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1987
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
1988
|
-
execute_or_queue_command(command, &block)
|
1989
|
-
end
|
1990
|
-
|
1991
|
-
# Updates a variant's names and info fields. All other modifications are
|
1992
|
-
# silently ignored. Returns the modified variant without its calls.
|
1993
|
-
# @param [String] variant_id
|
1994
|
-
# The ID of the variant to be updated.
|
1995
|
-
# @param [Google::Apis::GenomicsV1beta2::Variant] variant_object
|
1996
|
-
# @param [String] fields
|
1997
|
-
# Selector specifying which fields to include in a partial response.
|
1998
|
-
# @param [String] quota_user
|
1999
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2000
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2001
|
-
# Overrides userIp if both are provided.
|
2002
|
-
# @param [String] user_ip
|
2003
|
-
# IP address of the site where the request originates. Use this if you want to
|
2004
|
-
# enforce per-user limits.
|
2005
|
-
# @param [Google::Apis::RequestOptions] options
|
2006
|
-
# Request-specific options
|
2007
|
-
#
|
2008
|
-
# @yield [result, err] Result & error if block supplied
|
2009
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::Variant] parsed result object
|
2010
|
-
# @yieldparam err [StandardError] error object if request failed
|
2011
|
-
#
|
2012
|
-
# @return [Google::Apis::GenomicsV1beta2::Variant]
|
2013
|
-
#
|
2014
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2015
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2016
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2017
|
-
def update_variant(variant_id, variant_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2018
|
-
path = 'variants/{variantId}'
|
2019
|
-
command = make_simple_command(:put, path, options)
|
2020
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
|
2021
|
-
command.request_object = variant_object
|
2022
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::Variant::Representation
|
2023
|
-
command.response_class = Google::Apis::GenomicsV1beta2::Variant
|
2024
|
-
command.params['variantId'] = variant_id unless variant_id.nil?
|
2025
|
-
command.query['fields'] = fields unless fields.nil?
|
2026
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2027
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2028
|
-
execute_or_queue_command(command, &block)
|
2029
|
-
end
|
2030
|
-
|
2031
|
-
# Creates a new variant set (only necessary in v1).
|
2032
|
-
# @param [Google::Apis::GenomicsV1beta2::VariantSet] variant_set_object
|
2033
|
-
# @param [String] fields
|
2034
|
-
# Selector specifying which fields to include in a partial response.
|
2035
|
-
# @param [String] quota_user
|
2036
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2037
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2038
|
-
# Overrides userIp if both are provided.
|
2039
|
-
# @param [String] user_ip
|
2040
|
-
# IP address of the site where the request originates. Use this if you want to
|
2041
|
-
# enforce per-user limits.
|
2042
|
-
# @param [Google::Apis::RequestOptions] options
|
2043
|
-
# Request-specific options
|
2044
|
-
#
|
2045
|
-
# @yield [result, err] Result & error if block supplied
|
2046
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
|
2047
|
-
# @yieldparam err [StandardError] error object if request failed
|
2048
|
-
#
|
2049
|
-
# @return [Google::Apis::GenomicsV1beta2::VariantSet]
|
2050
|
-
#
|
2051
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2052
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2053
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2054
|
-
def create_variantset(variant_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2055
|
-
path = 'variantsets'
|
2056
|
-
command = make_simple_command(:post, path, options)
|
2057
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
|
2058
|
-
command.request_object = variant_set_object
|
2059
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
|
2060
|
-
command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
|
2061
|
-
command.query['fields'] = fields unless fields.nil?
|
2062
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2063
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2064
|
-
execute_or_queue_command(command, &block)
|
2065
|
-
end
|
2066
|
-
|
2067
|
-
# Deletes the contents of a variant set. The variant set object is not deleted.
|
2068
|
-
# @param [String] variant_set_id
|
2069
|
-
# The ID of the variant set to be deleted.
|
2070
|
-
# @param [String] fields
|
2071
|
-
# Selector specifying which fields to include in a partial response.
|
2072
|
-
# @param [String] quota_user
|
2073
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2074
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2075
|
-
# Overrides userIp if both are provided.
|
2076
|
-
# @param [String] user_ip
|
2077
|
-
# IP address of the site where the request originates. Use this if you want to
|
2078
|
-
# enforce per-user limits.
|
2079
|
-
# @param [Google::Apis::RequestOptions] options
|
2080
|
-
# Request-specific options
|
2081
|
-
#
|
2082
|
-
# @yield [result, err] Result & error if block supplied
|
2083
|
-
# @yieldparam result [NilClass] No result returned for this method
|
2084
|
-
# @yieldparam err [StandardError] error object if request failed
|
2085
|
-
#
|
2086
|
-
# @return [void]
|
2087
|
-
#
|
2088
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2089
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2090
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2091
|
-
def delete_variantset(variant_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2092
|
-
path = 'variantsets/{variantSetId}'
|
2093
|
-
command = make_simple_command(:delete, path, options)
|
2094
|
-
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
2095
|
-
command.query['fields'] = fields unless fields.nil?
|
2096
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2097
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2098
|
-
execute_or_queue_command(command, &block)
|
2099
|
-
end
|
2100
|
-
|
2101
|
-
# Exports variant set data to an external destination.
|
2102
|
-
# @param [String] variant_set_id
|
2103
|
-
# Required. The ID of the variant set that contains variant data which should be
|
2104
|
-
# exported. The caller must have READ access to this variant set.
|
2105
|
-
# @param [Google::Apis::GenomicsV1beta2::ExportVariantSetRequest] export_variant_set_request_object
|
2106
|
-
# @param [String] fields
|
2107
|
-
# Selector specifying which fields to include in a partial response.
|
2108
|
-
# @param [String] quota_user
|
2109
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2110
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2111
|
-
# Overrides userIp if both are provided.
|
2112
|
-
# @param [String] user_ip
|
2113
|
-
# IP address of the site where the request originates. Use this if you want to
|
2114
|
-
# enforce per-user limits.
|
2115
|
-
# @param [Google::Apis::RequestOptions] options
|
2116
|
-
# Request-specific options
|
2117
|
-
#
|
2118
|
-
# @yield [result, err] Result & error if block supplied
|
2119
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ExportVariantSetResponse] parsed result object
|
2120
|
-
# @yieldparam err [StandardError] error object if request failed
|
2121
|
-
#
|
2122
|
-
# @return [Google::Apis::GenomicsV1beta2::ExportVariantSetResponse]
|
2123
|
-
#
|
2124
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2125
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2126
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2127
|
-
def export_variant_set(variant_set_id, export_variant_set_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2128
|
-
path = 'variantsets/{variantSetId}/export'
|
2129
|
-
command = make_simple_command(:post, path, options)
|
2130
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::ExportVariantSetRequest::Representation
|
2131
|
-
command.request_object = export_variant_set_request_object
|
2132
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ExportVariantSetResponse::Representation
|
2133
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ExportVariantSetResponse
|
2134
|
-
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
2135
|
-
command.query['fields'] = fields unless fields.nil?
|
2136
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2137
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2138
|
-
execute_or_queue_command(command, &block)
|
2139
|
-
end
|
2140
|
-
|
2141
|
-
# Gets a variant set by ID.
|
2142
|
-
# @param [String] variant_set_id
|
2143
|
-
# Required. The ID of the variant set.
|
2144
|
-
# @param [String] fields
|
2145
|
-
# Selector specifying which fields to include in a partial response.
|
2146
|
-
# @param [String] quota_user
|
2147
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2148
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2149
|
-
# Overrides userIp if both are provided.
|
2150
|
-
# @param [String] user_ip
|
2151
|
-
# IP address of the site where the request originates. Use this if you want to
|
2152
|
-
# enforce per-user limits.
|
2153
|
-
# @param [Google::Apis::RequestOptions] options
|
2154
|
-
# Request-specific options
|
2155
|
-
#
|
2156
|
-
# @yield [result, err] Result & error if block supplied
|
2157
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
|
2158
|
-
# @yieldparam err [StandardError] error object if request failed
|
2159
|
-
#
|
2160
|
-
# @return [Google::Apis::GenomicsV1beta2::VariantSet]
|
2161
|
-
#
|
2162
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2163
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2164
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2165
|
-
def get_variantset(variant_set_id, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2166
|
-
path = 'variantsets/{variantSetId}'
|
2167
|
-
command = make_simple_command(:get, path, options)
|
2168
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
|
2169
|
-
command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
|
2170
|
-
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
2171
|
-
command.query['fields'] = fields unless fields.nil?
|
2172
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2173
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2174
|
-
execute_or_queue_command(command, &block)
|
2175
|
-
end
|
2176
|
-
|
2177
|
-
# Creates variant data by asynchronously importing the provided information.
|
2178
|
-
# The variants for import will be merged with any existing data and each other
|
2179
|
-
# according to the behavior of mergeVariants. In particular, this means for
|
2180
|
-
# merged VCF variants that have conflicting INFO fields, some data will be
|
2181
|
-
# arbitrarily discarded. As a special case, for single-sample VCF files, QUAL
|
2182
|
-
# and FILTER fields will be moved to the call level; these are sometimes
|
2183
|
-
# interpreted in a call-specific context. Imported VCF headers are appended to
|
2184
|
-
# the metadata already in a variant set.
|
2185
|
-
# @param [String] variant_set_id
|
2186
|
-
# Required. The variant set to which variant data should be imported.
|
2187
|
-
# @param [Google::Apis::GenomicsV1beta2::ImportVariantsRequest] import_variants_request_object
|
2188
|
-
# @param [String] fields
|
2189
|
-
# Selector specifying which fields to include in a partial response.
|
2190
|
-
# @param [String] quota_user
|
2191
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2192
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2193
|
-
# Overrides userIp if both are provided.
|
2194
|
-
# @param [String] user_ip
|
2195
|
-
# IP address of the site where the request originates. Use this if you want to
|
2196
|
-
# enforce per-user limits.
|
2197
|
-
# @param [Google::Apis::RequestOptions] options
|
2198
|
-
# Request-specific options
|
2199
|
-
#
|
2200
|
-
# @yield [result, err] Result & error if block supplied
|
2201
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::ImportVariantsResponse] parsed result object
|
2202
|
-
# @yieldparam err [StandardError] error object if request failed
|
2203
|
-
#
|
2204
|
-
# @return [Google::Apis::GenomicsV1beta2::ImportVariantsResponse]
|
2205
|
-
#
|
2206
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2207
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2208
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2209
|
-
def import_variants(variant_set_id, import_variants_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2210
|
-
path = 'variantsets/{variantSetId}/importVariants'
|
2211
|
-
command = make_simple_command(:post, path, options)
|
2212
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::ImportVariantsRequest::Representation
|
2213
|
-
command.request_object = import_variants_request_object
|
2214
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::ImportVariantsResponse::Representation
|
2215
|
-
command.response_class = Google::Apis::GenomicsV1beta2::ImportVariantsResponse
|
2216
|
-
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
2217
|
-
command.query['fields'] = fields unless fields.nil?
|
2218
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2219
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2220
|
-
execute_or_queue_command(command, &block)
|
2221
|
-
end
|
2222
|
-
|
2223
|
-
# Merges the given variants with existing variants. Each variant will be merged
|
2224
|
-
# with an existing variant that matches its reference sequence, start, end,
|
2225
|
-
# reference bases, and alternative bases. If no such variant exists, a new one
|
2226
|
-
# will be created.
|
2227
|
-
# When variants are merged, the call information from the new variant is added
|
2228
|
-
# to the existing variant, and other fields (such as key/value pairs) are
|
2229
|
-
# discarded.
|
2230
|
-
# @param [String] variant_set_id
|
2231
|
-
# The destination variant set.
|
2232
|
-
# @param [Google::Apis::GenomicsV1beta2::MergeVariantsRequest] merge_variants_request_object
|
2233
|
-
# @param [String] fields
|
2234
|
-
# Selector specifying which fields to include in a partial response.
|
2235
|
-
# @param [String] quota_user
|
2236
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2237
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2238
|
-
# Overrides userIp if both are provided.
|
2239
|
-
# @param [String] user_ip
|
2240
|
-
# IP address of the site where the request originates. Use this if you want to
|
2241
|
-
# enforce per-user limits.
|
2242
|
-
# @param [Google::Apis::RequestOptions] options
|
2243
|
-
# Request-specific options
|
2244
|
-
#
|
2245
|
-
# @yield [result, err] Result & error if block supplied
|
2246
|
-
# @yieldparam result [NilClass] No result returned for this method
|
2247
|
-
# @yieldparam err [StandardError] error object if request failed
|
2248
|
-
#
|
2249
|
-
# @return [void]
|
2250
|
-
#
|
2251
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2252
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2253
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2254
|
-
def merge_variants(variant_set_id, merge_variants_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2255
|
-
path = 'variantsets/{variantSetId}/mergeVariants'
|
2256
|
-
command = make_simple_command(:post, path, options)
|
2257
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::MergeVariantsRequest::Representation
|
2258
|
-
command.request_object = merge_variants_request_object
|
2259
|
-
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
2260
|
-
command.query['fields'] = fields unless fields.nil?
|
2261
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2262
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2263
|
-
execute_or_queue_command(command, &block)
|
2264
|
-
end
|
2265
|
-
|
2266
|
-
# Updates a variant set's metadata. All other modifications are silently ignored.
|
2267
|
-
# This method supports patch semantics.
|
2268
|
-
# @param [String] variant_set_id
|
2269
|
-
# The ID of the variant to be updated (must already exist).
|
2270
|
-
# @param [Google::Apis::GenomicsV1beta2::VariantSet] variant_set_object
|
2271
|
-
# @param [String] fields
|
2272
|
-
# Selector specifying which fields to include in a partial response.
|
2273
|
-
# @param [String] quota_user
|
2274
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2275
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2276
|
-
# Overrides userIp if both are provided.
|
2277
|
-
# @param [String] user_ip
|
2278
|
-
# IP address of the site where the request originates. Use this if you want to
|
2279
|
-
# enforce per-user limits.
|
2280
|
-
# @param [Google::Apis::RequestOptions] options
|
2281
|
-
# Request-specific options
|
2282
|
-
#
|
2283
|
-
# @yield [result, err] Result & error if block supplied
|
2284
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
|
2285
|
-
# @yieldparam err [StandardError] error object if request failed
|
2286
|
-
#
|
2287
|
-
# @return [Google::Apis::GenomicsV1beta2::VariantSet]
|
2288
|
-
#
|
2289
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2290
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2291
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2292
|
-
def patch_variantset(variant_set_id, variant_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2293
|
-
path = 'variantsets/{variantSetId}'
|
2294
|
-
command = make_simple_command(:patch, path, options)
|
2295
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
|
2296
|
-
command.request_object = variant_set_object
|
2297
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
|
2298
|
-
command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
|
2299
|
-
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
2300
|
-
command.query['fields'] = fields unless fields.nil?
|
2301
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2302
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2303
|
-
execute_or_queue_command(command, &block)
|
2304
|
-
end
|
2305
|
-
|
2306
|
-
# Returns a list of all variant sets matching search criteria.
|
2307
|
-
# Implements GlobalAllianceApi.searchVariantSets.
|
2308
|
-
# @param [Google::Apis::GenomicsV1beta2::SearchVariantSetsRequest] search_variant_sets_request_object
|
2309
|
-
# @param [String] fields
|
2310
|
-
# Selector specifying which fields to include in a partial response.
|
2311
|
-
# @param [String] quota_user
|
2312
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2313
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2314
|
-
# Overrides userIp if both are provided.
|
2315
|
-
# @param [String] user_ip
|
2316
|
-
# IP address of the site where the request originates. Use this if you want to
|
2317
|
-
# enforce per-user limits.
|
2318
|
-
# @param [Google::Apis::RequestOptions] options
|
2319
|
-
# Request-specific options
|
2320
|
-
#
|
2321
|
-
# @yield [result, err] Result & error if block supplied
|
2322
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse] parsed result object
|
2323
|
-
# @yieldparam err [StandardError] error object if request failed
|
2324
|
-
#
|
2325
|
-
# @return [Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse]
|
2326
|
-
#
|
2327
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2328
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2329
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2330
|
-
def search_variant_sets(search_variant_sets_request_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2331
|
-
path = 'variantsets/search'
|
2332
|
-
command = make_simple_command(:post, path, options)
|
2333
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::SearchVariantSetsRequest::Representation
|
2334
|
-
command.request_object = search_variant_sets_request_object
|
2335
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse::Representation
|
2336
|
-
command.response_class = Google::Apis::GenomicsV1beta2::SearchVariantSetsResponse
|
2337
|
-
command.query['fields'] = fields unless fields.nil?
|
2338
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2339
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2340
|
-
execute_or_queue_command(command, &block)
|
2341
|
-
end
|
2342
|
-
|
2343
|
-
# Updates a variant set's metadata. All other modifications are silently ignored.
|
2344
|
-
# @param [String] variant_set_id
|
2345
|
-
# The ID of the variant to be updated (must already exist).
|
2346
|
-
# @param [Google::Apis::GenomicsV1beta2::VariantSet] variant_set_object
|
2347
|
-
# @param [String] fields
|
2348
|
-
# Selector specifying which fields to include in a partial response.
|
2349
|
-
# @param [String] quota_user
|
2350
|
-
# Available to use for quota purposes for server-side applications. Can be any
|
2351
|
-
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
2352
|
-
# Overrides userIp if both are provided.
|
2353
|
-
# @param [String] user_ip
|
2354
|
-
# IP address of the site where the request originates. Use this if you want to
|
2355
|
-
# enforce per-user limits.
|
2356
|
-
# @param [Google::Apis::RequestOptions] options
|
2357
|
-
# Request-specific options
|
2358
|
-
#
|
2359
|
-
# @yield [result, err] Result & error if block supplied
|
2360
|
-
# @yieldparam result [Google::Apis::GenomicsV1beta2::VariantSet] parsed result object
|
2361
|
-
# @yieldparam err [StandardError] error object if request failed
|
2362
|
-
#
|
2363
|
-
# @return [Google::Apis::GenomicsV1beta2::VariantSet]
|
2364
|
-
#
|
2365
|
-
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
2366
|
-
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
2367
|
-
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
2368
|
-
def update_variantset(variant_set_id, variant_set_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
|
2369
|
-
path = 'variantsets/{variantSetId}'
|
2370
|
-
command = make_simple_command(:put, path, options)
|
2371
|
-
command.request_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
|
2372
|
-
command.request_object = variant_set_object
|
2373
|
-
command.response_representation = Google::Apis::GenomicsV1beta2::VariantSet::Representation
|
2374
|
-
command.response_class = Google::Apis::GenomicsV1beta2::VariantSet
|
2375
|
-
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
2376
|
-
command.query['fields'] = fields unless fields.nil?
|
2377
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2378
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2379
|
-
execute_or_queue_command(command, &block)
|
2380
|
-
end
|
2381
|
-
|
2382
|
-
protected
|
2383
|
-
|
2384
|
-
def apply_command_defaults(command)
|
2385
|
-
command.query['key'] = key unless key.nil?
|
2386
|
-
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
2387
|
-
command.query['userIp'] = user_ip unless user_ip.nil?
|
2388
|
-
end
|
2389
|
-
end
|
2390
|
-
end
|
2391
|
-
end
|
2392
|
-
end
|