google-api-client 0.10.1 → 0.10.2
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- checksums.yaml +4 -4
- data/CHANGELOG.md +3 -0
- data/api_names.yaml +395 -0
- data/generated/google/apis/adexchangebuyer2_v2beta1.rb +1 -1
- data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +254 -254
- data/generated/google/apis/adexchangebuyer2_v2beta1/representations.rb +65 -65
- data/generated/google/apis/adexchangebuyer2_v2beta1/service.rb +220 -220
- data/generated/google/apis/admin_directory_v1.rb +1 -1
- data/generated/google/apis/admin_directory_v1/classes.rb +106 -0
- data/generated/google/apis/admin_directory_v1/representations.rb +37 -0
- data/generated/google/apis/admin_reports_v1.rb +3 -3
- data/generated/google/apis/admin_reports_v1/service.rb +6 -6
- data/generated/google/apis/adsense_v1_4.rb +1 -1
- data/generated/google/apis/adsensehost_v4_1.rb +1 -1
- data/generated/google/apis/analytics_v3.rb +1 -1
- data/generated/google/apis/analytics_v3/service.rb +39 -0
- data/generated/google/apis/analyticsreporting_v4/classes.rb +920 -920
- data/generated/google/apis/analyticsreporting_v4/representations.rb +197 -197
- data/generated/google/apis/analyticsreporting_v4/service.rb +4 -4
- data/generated/google/apis/androidenterprise_v1.rb +1 -1
- data/generated/google/apis/androidenterprise_v1/classes.rb +8 -13
- data/generated/google/apis/androidenterprise_v1/service.rb +3 -3
- data/generated/google/apis/appengine_v1beta5.rb +1 -1
- data/generated/google/apis/appengine_v1beta5/classes.rb +115 -5
- data/generated/google/apis/appengine_v1beta5/representations.rb +37 -0
- data/generated/google/apis/appengine_v1beta5/service.rb +12 -9
- data/generated/google/apis/appstate_v1.rb +1 -1
- data/generated/google/apis/bigquery_v2.rb +1 -1
- data/generated/google/apis/bigquery_v2/classes.rb +32 -37
- data/generated/google/apis/bigquery_v2/service.rb +10 -2
- data/generated/google/apis/calendar_v3.rb +1 -1
- data/generated/google/apis/calendar_v3/classes.rb +205 -0
- data/generated/google/apis/calendar_v3/representations.rb +97 -0
- data/generated/google/apis/classroom_v1.rb +22 -25
- data/generated/google/apis/classroom_v1/classes.rb +998 -907
- data/generated/google/apis/classroom_v1/representations.rb +240 -240
- data/generated/google/apis/classroom_v1/service.rb +1269 -1061
- data/generated/google/apis/cloudbuild_v1.rb +1 -1
- data/generated/google/apis/cloudbuild_v1/classes.rb +164 -163
- data/generated/google/apis/cloudbuild_v1/representations.rb +31 -31
- data/generated/google/apis/cloudbuild_v1/service.rb +114 -114
- data/generated/google/apis/clouddebugger_v2.rb +1 -1
- data/generated/google/apis/clouddebugger_v2/classes.rb +687 -687
- data/generated/google/apis/clouddebugger_v2/representations.rb +147 -147
- data/generated/google/apis/clouddebugger_v2/service.rb +132 -132
- data/generated/google/apis/cloudkms_v1.rb +1 -1
- data/generated/google/apis/cloudkms_v1/classes.rb +231 -248
- data/generated/google/apis/cloudkms_v1/representations.rb +74 -74
- data/generated/google/apis/cloudkms_v1/service.rb +228 -228
- data/generated/google/apis/cloudmonitoring_v2beta2.rb +1 -1
- data/generated/google/apis/cloudresourcemanager_v1.rb +1 -1
- data/generated/google/apis/cloudresourcemanager_v1/classes.rb +738 -128
- data/generated/google/apis/cloudresourcemanager_v1/representations.rb +245 -23
- data/generated/google/apis/cloudresourcemanager_v1/service.rb +1293 -249
- data/generated/google/apis/cloudresourcemanager_v1beta1.rb +4 -4
- data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +982 -372
- data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +293 -71
- data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +626 -277
- data/generated/google/apis/cloudtrace_v1.rb +1 -1
- data/generated/google/apis/cloudtrace_v1/classes.rb +19 -19
- data/generated/google/apis/cloudtrace_v1/representations.rb +2 -2
- data/generated/google/apis/cloudtrace_v1/service.rb +30 -30
- data/generated/google/apis/compute_beta.rb +1 -1
- data/generated/google/apis/compute_beta/classes.rb +116 -0
- data/generated/google/apis/compute_beta/representations.rb +48 -0
- data/generated/google/apis/compute_beta/service.rb +46 -1
- data/generated/google/apis/compute_v1.rb +1 -1
- data/generated/google/apis/dataflow_v1b3.rb +1 -1
- data/generated/google/apis/dataflow_v1b3/classes.rb +3276 -3320
- data/generated/google/apis/dataflow_v1b3/representations.rb +779 -781
- data/generated/google/apis/dataflow_v1b3/service.rb +225 -225
- data/generated/google/apis/dataproc_v1.rb +1 -1
- data/generated/google/apis/dataproc_v1/classes.rb +1221 -1207
- data/generated/google/apis/dataproc_v1/representations.rb +255 -253
- data/generated/google/apis/dataproc_v1/service.rb +100 -100
- data/generated/google/apis/deploymentmanager_v2.rb +1 -1
- data/generated/google/apis/deploymentmanager_v2/classes.rb +5 -5
- data/generated/google/apis/dns_v1.rb +1 -1
- data/generated/google/apis/dns_v2beta1.rb +1 -1
- data/generated/google/apis/doubleclicksearch_v2.rb +1 -1
- data/generated/google/apis/drive_v2.rb +1 -1
- data/generated/google/apis/drive_v2/classes.rb +3 -1
- data/generated/google/apis/drive_v3.rb +1 -1
- data/generated/google/apis/drive_v3/classes.rb +3 -1
- data/generated/google/apis/fusiontables_v2.rb +1 -1
- data/generated/google/apis/games_configuration_v1configuration.rb +1 -1
- data/generated/google/apis/games_management_v1management.rb +1 -1
- data/generated/google/apis/games_v1.rb +1 -1
- data/generated/google/apis/genomics_v1.rb +7 -7
- data/generated/google/apis/genomics_v1/classes.rb +959 -959
- data/generated/google/apis/genomics_v1/representations.rb +238 -238
- data/generated/google/apis/genomics_v1/service.rb +996 -996
- data/generated/google/apis/iam_v1.rb +1 -1
- data/generated/google/apis/iam_v1/classes.rb +440 -440
- data/generated/google/apis/iam_v1/representations.rb +94 -94
- data/generated/google/apis/iam_v1/service.rb +170 -173
- data/generated/google/apis/identitytoolkit_v3.rb +1 -1
- data/generated/google/apis/identitytoolkit_v3/classes.rb +55 -0
- data/generated/google/apis/identitytoolkit_v3/representations.rb +8 -0
- data/generated/google/apis/kgsearch_v1/service.rb +4 -4
- data/generated/google/apis/language_v1beta1.rb +1 -1
- data/generated/google/apis/language_v1beta1/classes.rb +427 -427
- data/generated/google/apis/language_v1beta1/representations.rb +113 -113
- data/generated/google/apis/language_v1beta1/service.rb +25 -24
- data/generated/google/apis/licensing_v1.rb +2 -2
- data/generated/google/apis/licensing_v1/classes.rb +14 -2
- data/generated/google/apis/licensing_v1/representations.rb +2 -0
- data/generated/google/apis/licensing_v1/service.rb +1 -1
- data/generated/google/apis/logging_v2beta1.rb +1 -1
- data/generated/google/apis/logging_v2beta1/classes.rb +864 -864
- data/generated/google/apis/logging_v2beta1/representations.rb +168 -168
- data/generated/google/apis/logging_v2beta1/service.rb +261 -261
- data/generated/google/apis/manufacturers_v1.rb +1 -1
- data/generated/google/apis/manufacturers_v1/classes.rb +452 -105
- data/generated/google/apis/manufacturers_v1/representations.rb +138 -18
- data/generated/google/apis/manufacturers_v1/service.rb +11 -11
- data/generated/google/apis/mirror_v1.rb +1 -1
- data/generated/google/apis/monitoring_v3.rb +7 -7
- data/generated/google/apis/monitoring_v3/classes.rb +668 -670
- data/generated/google/apis/monitoring_v3/representations.rb +140 -140
- data/generated/google/apis/monitoring_v3/service.rb +208 -208
- data/generated/google/apis/partners_v2.rb +1 -1
- data/generated/google/apis/partners_v2/classes.rb +505 -505
- data/generated/google/apis/partners_v2/representations.rb +118 -118
- data/generated/google/apis/partners_v2/service.rb +275 -275
- data/generated/google/apis/people_v1.rb +1 -1
- data/generated/google/apis/people_v1/classes.rb +1037 -1031
- data/generated/google/apis/people_v1/representations.rb +247 -246
- data/generated/google/apis/people_v1/service.rb +20 -20
- data/generated/google/apis/plus_domains_v1.rb +1 -1
- data/generated/google/apis/plus_v1.rb +1 -1
- data/generated/google/apis/proximitybeacon_v1beta1.rb +1 -1
- data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +392 -392
- data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +93 -93
- data/generated/google/apis/proximitybeacon_v1beta1/service.rb +381 -381
- data/generated/google/apis/pubsub_v1.rb +4 -4
- data/generated/google/apis/pubsub_v1/classes.rb +131 -132
- data/generated/google/apis/pubsub_v1/representations.rb +35 -35
- data/generated/google/apis/pubsub_v1/service.rb +399 -408
- data/generated/google/apis/reseller_v1.rb +1 -1
- data/generated/google/apis/reseller_v1/classes.rb +9 -0
- data/generated/google/apis/reseller_v1/representations.rb +1 -0
- data/generated/google/apis/script_v1.rb +9 -9
- data/generated/google/apis/script_v1/classes.rb +110 -110
- data/generated/google/apis/script_v1/representations.rb +26 -26
- data/generated/google/apis/sheets_v4.rb +4 -4
- data/generated/google/apis/sheets_v4/classes.rb +4329 -4329
- data/generated/google/apis/sheets_v4/representations.rb +856 -856
- data/generated/google/apis/sheets_v4/service.rb +106 -106
- data/generated/google/apis/slides_v1.rb +4 -4
- data/generated/google/apis/slides_v1/classes.rb +2923 -2841
- data/generated/google/apis/slides_v1/representations.rb +722 -691
- data/generated/google/apis/slides_v1/service.rb +58 -15
- data/generated/google/apis/speech_v1beta1.rb +1 -1
- data/generated/google/apis/speech_v1beta1/classes.rb +191 -191
- data/generated/google/apis/speech_v1beta1/representations.rb +57 -57
- data/generated/google/apis/speech_v1beta1/service.rb +70 -70
- data/generated/google/apis/storage_v1.rb +1 -1
- data/generated/google/apis/storage_v1/classes.rb +151 -0
- data/generated/google/apis/storage_v1/representations.rb +45 -0
- data/generated/google/apis/storage_v1/service.rb +248 -0
- data/generated/google/apis/vision_v1.rb +1 -1
- data/generated/google/apis/vision_v1/classes.rb +1227 -1221
- data/generated/google/apis/vision_v1/representations.rb +217 -215
- data/generated/google/apis/webmasters_v3.rb +1 -1
- data/generated/google/apis/youtube_analytics_v1.rb +1 -1
- data/generated/google/apis/youtube_partner_v1.rb +1 -1
- data/generated/google/apis/youtube_partner_v1/classes.rb +78 -0
- data/generated/google/apis/youtube_partner_v1/representations.rb +34 -0
- data/generated/google/apis/youtube_partner_v1/service.rb +40 -0
- data/generated/google/apis/youtubereporting_v1.rb +4 -4
- data/generated/google/apis/youtubereporting_v1/classes.rb +65 -65
- data/generated/google/apis/youtubereporting_v1/representations.rb +18 -18
- data/generated/google/apis/youtubereporting_v1/service.rb +111 -111
- data/lib/google/apis/version.rb +1 -1
- metadata +2 -2
@@ -25,7 +25,7 @@ module Google
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# @see https://developers.google.com/cloud-dns
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module DnsV1
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VERSION = 'V1'
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REVISION = '
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REVISION = '20170322'
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# View and manage your data across Google Cloud Platform services
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AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
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# @see https://developers.google.com/cloud-dns
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module DnsV2beta1
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VERSION = 'V2beta1'
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# View and manage your data across Google Cloud Platform services
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AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
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# @see https://developers.google.com/doubleclick-search/
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module DoubleclicksearchV2
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VERSION = 'V2'
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REVISION = '
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REVISION = '20170314'
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attr_accessor :thumbnail_version
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# The title of this file.
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# The title of this file. Note that for immutable items such as the top level
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# folders of Team Drives, My Drive root folder, and Application Data folder the
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# title is constant.
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# The name of the file. This is not necessarily unique within a folder.
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# The name of the file. This is not necessarily unique within a folder. Note
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# that for immutable items such as the top level folders of Team Drives, My
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# Drive root folder, and Application Data folder the name is constant.
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attr_accessor :name
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# @see https://developers.google.com/fusiontables
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module FusiontablesV2
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VERSION = 'V2'
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# Manage your Fusion Tables
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# @see https://developers.google.com/games/services
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module GamesConfigurationV1configuration
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VERSION = 'V1configuration'
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# View and manage your Google Play Developer account
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AUTH_ANDROIDPUBLISHER = 'https://www.googleapis.com/auth/androidpublisher'
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# @see https://developers.google.com/games/services
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module GamesManagementV1management
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VERSION = 'V1management'
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# Share your Google+ profile information and view and manage your game activity
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AUTH_GAMES = 'https://www.googleapis.com/auth/games'
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# @see https://developers.google.com/games/services/
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module GamesV1
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# View and manage its own configuration data in your Google Drive
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AUTH_DRIVE_APPDATA = 'https://www.googleapis.com/auth/drive.appdata'
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# @see https://cloud.google.com/genomics
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module GenomicsV1
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VERSION = 'V1'
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REVISION = '
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# View and manage your data across Google Cloud Platform services
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AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
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# View Genomics data
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AUTH_GENOMICS_READONLY = 'https://www.googleapis.com/auth/genomics.readonly'
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# Manage your data in Google Cloud Storage
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AUTH_DEVSTORAGE_READ_WRITE = 'https://www.googleapis.com/auth/devstorage.read_write'
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AUTH_GENOMICS_READONLY = 'https://www.googleapis.com/auth/genomics.readonly'
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module Apis
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module GenomicsV1
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# Response message for `TestIamPermissions` method.
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class TestIamPermissionsResponse
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include Google::Apis::Core::Hashable
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# A subset of `TestPermissionsRequest.permissions` that the caller is
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# allowed.
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# Corresponds to the JSON property `permissions`
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attr_accessor :permissions
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update!(**args)
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def update!(**args)
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end
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end
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# Request message for `GetIamPolicy` method.
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class GetIamPolicyRequest
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include Google::Apis::Core::Hashable
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def update!(**args)
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end
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end
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#
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class SearchReferencesResponse
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include Google::Apis::Core::Hashable
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# The matching references.
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# Corresponds to the JSON property `references`
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# @return [Array<Google::Apis::GenomicsV1::Reference>]
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attr_accessor :references
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# The continuation token, which is used to page through large result sets.
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# Provide this value in a subsequent request to return the next page of
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# results. This field will be empty if there aren't any additional results.
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# Corresponds to the JSON property `nextPageToken`
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# @return [String]
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attr_accessor :next_page_token
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def initialize(**args)
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update!(**args)
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end
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# Update properties of this object
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def update!(**args)
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@references = args[:references] if args.key?(:references)
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@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
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end
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end
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#
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class SearchAnnotationSetsRequest
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include Google::Apis::Core::Hashable
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# Only return annotations sets for which a substring of the name matches this
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# string (case insensitive).
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# Corresponds to the JSON property `name`
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attr_accessor :name
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# `nextPageToken` from the previous response.
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attr_accessor :page_size
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# Required. The dataset IDs to search within. Caller must have `READ` access
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# to these datasets.
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# Corresponds to the JSON property `datasetIds`
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# returned.
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# The read group set search response.
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# The list of matching read group sets.
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# Corresponds to the JSON property `readGroupSets`
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attr_accessor :read_group_sets
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# The continuation token, which is used to page through large result sets.
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# Provide this value in a subsequent request to return the next page of
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# results. This field will be empty if there aren't any additional results.
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# Corresponds to the JSON property `nextPageToken`
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attr_accessor :next_page_token
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#
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class SearchReferencesRequest
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include Google::Apis::Core::Hashable
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# If present, return references for which the
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# md5checksum matches exactly.
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attr_accessor :md5checksums
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# If present, return references for which a prefix of any of
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# sourceAccessions match
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# any of these strings. Accession numbers typically have a main number and a
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# version, for example `GCF_000001405.26`.
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attr_accessor :accessions
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# The continuation token, which is used to page through large result sets.
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# To get the next page of results, set this parameter to the value of
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# `nextPageToken` from the previous response.
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# Corresponds to the JSON property `pageToken`
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# @return [String]
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attr_accessor :page_token
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# If present, return only references which belong to this reference set.
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# Corresponds to the JSON property `referenceSetId`
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attr_accessor :reference_set_id
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# The maximum number of results to return in a single page. If unspecified,
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# defaults to 1024. The maximum value is 4096.
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# Corresponds to the JSON property `pageSize`
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def initialize(**args)
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end
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end
|
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end
|
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|
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# A linear alignment can be represented by one CIGAR string. Describes the
|
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# mapped position and local alignment of the read to the reference.
|
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class LinearAlignment
|
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include Google::Apis::Core::Hashable
|
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|
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# An abstraction for referring to a genomic position, in relation to some
|
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# already known reference. For now, represents a genomic position as a
|
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# reference name, a base number on that reference (0-based), and a
|
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# determination of forward or reverse strand.
|
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# Corresponds to the JSON property `position`
|
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# @return [Google::Apis::GenomicsV1::Position]
|
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attr_accessor :position
|
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|
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# Represents the local alignment of this sequence (alignment matches, indels,
|
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# etc) against the reference.
|
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# Corresponds to the JSON property `cigar`
|
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# @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
|
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attr_accessor :cigar
|
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|
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# The mapping quality of this alignment. Represents how likely
|
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# the read maps to this position as opposed to other locations.
|
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# Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
|
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# the nearest integer.
|
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# Corresponds to the JSON property `mappingQuality`
|
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# @return [Fixnum]
|
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attr_accessor :mapping_quality
|
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|
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|
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|
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def initialize(**args)
|
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|
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update!(**args)
|
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|
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end
|
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|
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|
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# Update properties of this object
|
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def update!(**args)
|
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|
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|
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|
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|
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@mapping_quality = args[:mapping_quality] if args.key?(:mapping_quality)
|
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end
|
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end
|
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-
|
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|
# A Dataset is a collection of genomic data.
|
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26
|
# For more genomics resource definitions, see [Fundamentals of Google
|
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27
|
# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
@@ -339,12 +107,6 @@ module Google
|
|
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|
# @return [String]
|
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|
attr_accessor :id
|
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109
|
|
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|
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# The predicted insert size of this read group. The insert size is the length
|
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|
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# the sequenced DNA fragment from end-to-end, not including the adapters.
|
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|
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# Corresponds to the JSON property `predictedInsertSize`
|
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# @return [Fixnum]
|
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|
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attr_accessor :predicted_insert_size
|
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|
-
|
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110
|
# The programs used to generate this read group. Programs are always
|
349
111
|
# identical for all read groups within a read group set. For this reason,
|
350
112
|
# only the first read group in a returned set will have this field
|
@@ -353,6 +115,12 @@ module Google
|
|
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115
|
# @return [Array<Google::Apis::GenomicsV1::Program>]
|
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116
|
attr_accessor :programs
|
355
117
|
|
118
|
+
# The predicted insert size of this read group. The insert size is the length
|
119
|
+
# the sequenced DNA fragment from end-to-end, not including the adapters.
|
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|
+
# Corresponds to the JSON property `predictedInsertSize`
|
121
|
+
# @return [Fixnum]
|
122
|
+
attr_accessor :predicted_insert_size
|
123
|
+
|
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124
|
# A free-form text description of this read group.
|
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125
|
# Corresponds to the JSON property `description`
|
358
126
|
# @return [String]
|
@@ -383,8 +151,8 @@ module Google
|
|
383
151
|
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
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|
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|
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153
|
@id = args[:id] if args.key?(:id)
|
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|
-
@predicted_insert_size = args[:predicted_insert_size] if args.key?(:predicted_insert_size)
|
387
154
|
@programs = args[:programs] if args.key?(:programs)
|
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|
+
@predicted_insert_size = args[:predicted_insert_size] if args.key?(:predicted_insert_size)
|
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156
|
@description = args[:description] if args.key?(:description)
|
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157
|
@sample_id = args[:sample_id] if args.key?(:sample_id)
|
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158
|
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
@@ -404,27 +172,17 @@ module Google
|
|
404
172
|
class ReadGroupSet
|
405
173
|
include Google::Apis::Core::Hashable
|
406
174
|
|
407
|
-
# The
|
408
|
-
#
|
409
|
-
#
|
410
|
-
|
411
|
-
|
412
|
-
# The dataset to which this read group set belongs.
|
413
|
-
# Corresponds to the JSON property `datasetId`
|
414
|
-
# @return [String]
|
415
|
-
attr_accessor :dataset_id
|
175
|
+
# The read groups in this set. There are typically 1-10 read groups in a read
|
176
|
+
# group set.
|
177
|
+
# Corresponds to the JSON property `readGroups`
|
178
|
+
# @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
|
179
|
+
attr_accessor :read_groups
|
416
180
|
|
417
181
|
# The filename of the original source file for this read group set, if any.
|
418
182
|
# Corresponds to the JSON property `filename`
|
419
183
|
# @return [String]
|
420
184
|
attr_accessor :filename
|
421
185
|
|
422
|
-
# The read groups in this set. There are typically 1-10 read groups in a read
|
423
|
-
# group set.
|
424
|
-
# Corresponds to the JSON property `readGroups`
|
425
|
-
# @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
|
426
|
-
attr_accessor :read_groups
|
427
|
-
|
428
186
|
# The read group set name. By default this will be initialized to the sample
|
429
187
|
# name of the sequenced data contained in this set.
|
430
188
|
# Corresponds to the JSON property `name`
|
@@ -441,19 +199,29 @@ module Google
|
|
441
199
|
# @return [Hash<String,Array<Object>>]
|
442
200
|
attr_accessor :info
|
443
201
|
|
202
|
+
# The server-generated read group set ID, unique for all read group sets.
|
203
|
+
# Corresponds to the JSON property `id`
|
204
|
+
# @return [String]
|
205
|
+
attr_accessor :id
|
206
|
+
|
207
|
+
# The dataset to which this read group set belongs.
|
208
|
+
# Corresponds to the JSON property `datasetId`
|
209
|
+
# @return [String]
|
210
|
+
attr_accessor :dataset_id
|
211
|
+
|
444
212
|
def initialize(**args)
|
445
213
|
update!(**args)
|
446
214
|
end
|
447
215
|
|
448
216
|
# Update properties of this object
|
449
217
|
def update!(**args)
|
450
|
-
@id = args[:id] if args.key?(:id)
|
451
|
-
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
452
|
-
@filename = args[:filename] if args.key?(:filename)
|
453
218
|
@read_groups = args[:read_groups] if args.key?(:read_groups)
|
219
|
+
@filename = args[:filename] if args.key?(:filename)
|
454
220
|
@name = args[:name] if args.key?(:name)
|
455
221
|
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
456
222
|
@info = args[:info] if args.key?(:info)
|
223
|
+
@id = args[:id] if args.key?(:id)
|
224
|
+
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
457
225
|
end
|
458
226
|
end
|
459
227
|
|
@@ -461,11 +229,6 @@ module Google
|
|
461
229
|
class SearchVariantSetsResponse
|
462
230
|
include Google::Apis::Core::Hashable
|
463
231
|
|
464
|
-
# The variant sets belonging to the requested dataset.
|
465
|
-
# Corresponds to the JSON property `variantSets`
|
466
|
-
# @return [Array<Google::Apis::GenomicsV1::VariantSet>]
|
467
|
-
attr_accessor :variant_sets
|
468
|
-
|
469
232
|
# The continuation token, which is used to page through large result sets.
|
470
233
|
# Provide this value in a subsequent request to return the next page of
|
471
234
|
# results. This field will be empty if there aren't any additional results.
|
@@ -473,14 +236,19 @@ module Google
|
|
473
236
|
# @return [String]
|
474
237
|
attr_accessor :next_page_token
|
475
238
|
|
239
|
+
# The variant sets belonging to the requested dataset.
|
240
|
+
# Corresponds to the JSON property `variantSets`
|
241
|
+
# @return [Array<Google::Apis::GenomicsV1::VariantSet>]
|
242
|
+
attr_accessor :variant_sets
|
243
|
+
|
476
244
|
def initialize(**args)
|
477
245
|
update!(**args)
|
478
246
|
end
|
479
247
|
|
480
248
|
# Update properties of this object
|
481
249
|
def update!(**args)
|
482
|
-
@variant_sets = args[:variant_sets] if args.key?(:variant_sets)
|
483
250
|
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
251
|
+
@variant_sets = args[:variant_sets] if args.key?(:variant_sets)
|
484
252
|
end
|
485
253
|
end
|
486
254
|
|
@@ -578,13 +346,6 @@ module Google
|
|
578
346
|
class Position
|
579
347
|
include Google::Apis::Core::Hashable
|
580
348
|
|
581
|
-
# Whether this position is on the reverse strand, as opposed to the forward
|
582
|
-
# strand.
|
583
|
-
# Corresponds to the JSON property `reverseStrand`
|
584
|
-
# @return [Boolean]
|
585
|
-
attr_accessor :reverse_strand
|
586
|
-
alias_method :reverse_strand?, :reverse_strand
|
587
|
-
|
588
349
|
# The 0-based offset from the start of the forward strand for that reference.
|
589
350
|
# Corresponds to the JSON property `position`
|
590
351
|
# @return [String]
|
@@ -595,15 +356,22 @@ module Google
|
|
595
356
|
# @return [String]
|
596
357
|
attr_accessor :reference_name
|
597
358
|
|
359
|
+
# Whether this position is on the reverse strand, as opposed to the forward
|
360
|
+
# strand.
|
361
|
+
# Corresponds to the JSON property `reverseStrand`
|
362
|
+
# @return [Boolean]
|
363
|
+
attr_accessor :reverse_strand
|
364
|
+
alias_method :reverse_strand?, :reverse_strand
|
365
|
+
|
598
366
|
def initialize(**args)
|
599
367
|
update!(**args)
|
600
368
|
end
|
601
369
|
|
602
370
|
# Update properties of this object
|
603
371
|
def update!(**args)
|
604
|
-
@reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
|
605
372
|
@position = args[:position] if args.key?(:position)
|
606
373
|
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
374
|
+
@reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
|
607
375
|
end
|
608
376
|
end
|
609
377
|
|
@@ -638,6 +406,12 @@ module Google
|
|
638
406
|
class SearchCallSetsRequest
|
639
407
|
include Google::Apis::Core::Hashable
|
640
408
|
|
409
|
+
# Restrict the query to call sets within the given variant sets. At least one
|
410
|
+
# ID must be provided.
|
411
|
+
# Corresponds to the JSON property `variantSetIds`
|
412
|
+
# @return [Array<String>]
|
413
|
+
attr_accessor :variant_set_ids
|
414
|
+
|
641
415
|
# Only return call sets for which a substring of the name matches this
|
642
416
|
# string.
|
643
417
|
# Corresponds to the JSON property `name`
|
@@ -657,22 +431,16 @@ module Google
|
|
657
431
|
# @return [Fixnum]
|
658
432
|
attr_accessor :page_size
|
659
433
|
|
660
|
-
# Restrict the query to call sets within the given variant sets. At least one
|
661
|
-
# ID must be provided.
|
662
|
-
# Corresponds to the JSON property `variantSetIds`
|
663
|
-
# @return [Array<String>]
|
664
|
-
attr_accessor :variant_set_ids
|
665
|
-
|
666
434
|
def initialize(**args)
|
667
435
|
update!(**args)
|
668
436
|
end
|
669
437
|
|
670
438
|
# Update properties of this object
|
671
439
|
def update!(**args)
|
440
|
+
@variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
|
672
441
|
@name = args[:name] if args.key?(:name)
|
673
442
|
@page_token = args[:page_token] if args.key?(:page_token)
|
674
443
|
@page_size = args[:page_size] if args.key?(:page_size)
|
675
|
-
@variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
|
676
444
|
end
|
677
445
|
end
|
678
446
|
|
@@ -796,14 +564,6 @@ module Google
|
|
796
564
|
class SearchReadsRequest
|
797
565
|
include Google::Apis::Core::Hashable
|
798
566
|
|
799
|
-
# The IDs of the read groups sets within which to search for reads. All
|
800
|
-
# specified read group sets must be aligned against a common set of reference
|
801
|
-
# sequences; this defines the genomic coordinates for the query. Must specify
|
802
|
-
# one of `readGroupSetIds` or `readGroupIds`.
|
803
|
-
# Corresponds to the JSON property `readGroupSetIds`
|
804
|
-
# @return [Array<String>]
|
805
|
-
attr_accessor :read_group_set_ids
|
806
|
-
|
807
567
|
# The IDs of the read groups within which to search for reads. All specified
|
808
568
|
# read groups must belong to the same read group sets. Must specify one of
|
809
569
|
# `readGroupSetIds` or `readGroupIds`.
|
@@ -843,19 +603,40 @@ module Google
|
|
843
603
|
# @return [String]
|
844
604
|
attr_accessor :reference_name
|
845
605
|
|
606
|
+
# The IDs of the read groups sets within which to search for reads. All
|
607
|
+
# specified read group sets must be aligned against a common set of reference
|
608
|
+
# sequences; this defines the genomic coordinates for the query. Must specify
|
609
|
+
# one of `readGroupSetIds` or `readGroupIds`.
|
610
|
+
# Corresponds to the JSON property `readGroupSetIds`
|
611
|
+
# @return [Array<String>]
|
612
|
+
attr_accessor :read_group_set_ids
|
613
|
+
|
846
614
|
def initialize(**args)
|
847
615
|
update!(**args)
|
848
616
|
end
|
849
617
|
|
850
618
|
# Update properties of this object
|
851
619
|
def update!(**args)
|
852
|
-
@read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
|
853
620
|
@read_group_ids = args[:read_group_ids] if args.key?(:read_group_ids)
|
854
621
|
@end = args[:end] if args.key?(:end)
|
855
622
|
@page_token = args[:page_token] if args.key?(:page_token)
|
856
623
|
@page_size = args[:page_size] if args.key?(:page_size)
|
857
624
|
@start = args[:start] if args.key?(:start)
|
858
625
|
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
626
|
+
@read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
|
627
|
+
end
|
628
|
+
end
|
629
|
+
|
630
|
+
# The request message for Operations.CancelOperation.
|
631
|
+
class CancelOperationRequest
|
632
|
+
include Google::Apis::Core::Hashable
|
633
|
+
|
634
|
+
def initialize(**args)
|
635
|
+
update!(**args)
|
636
|
+
end
|
637
|
+
|
638
|
+
# Update properties of this object
|
639
|
+
def update!(**args)
|
859
640
|
end
|
860
641
|
end
|
861
642
|
|
@@ -868,24 +649,32 @@ module Google
|
|
868
649
|
class Annotation
|
869
650
|
include Google::Apis::Core::Hashable
|
870
651
|
|
652
|
+
# Whether this range refers to the reverse strand, as opposed to the forward
|
653
|
+
# strand. Note that regardless of this field, the start/end position of the
|
654
|
+
# range always refer to the forward strand.
|
655
|
+
# Corresponds to the JSON property `reverseStrand`
|
656
|
+
# @return [Boolean]
|
657
|
+
attr_accessor :reverse_strand
|
658
|
+
alias_method :reverse_strand?, :reverse_strand
|
659
|
+
|
871
660
|
# The display name corresponding to the reference specified by
|
872
661
|
# `referenceId`, for example `chr1`, `1`, or `chrX`.
|
873
662
|
# Corresponds to the JSON property `referenceName`
|
874
663
|
# @return [String]
|
875
664
|
attr_accessor :reference_name
|
876
665
|
|
877
|
-
# The data type for this annotation. Must match the containing annotation
|
878
|
-
# set's type.
|
879
|
-
# Corresponds to the JSON property `type`
|
880
|
-
# @return [String]
|
881
|
-
attr_accessor :type
|
882
|
-
|
883
666
|
# A map of additional read alignment information. This must be of the form
|
884
667
|
# map<string, string[]> (string key mapping to a list of string values).
|
885
668
|
# Corresponds to the JSON property `info`
|
886
669
|
# @return [Hash<String,Array<Object>>]
|
887
670
|
attr_accessor :info
|
888
671
|
|
672
|
+
# The data type for this annotation. Must match the containing annotation
|
673
|
+
# set's type.
|
674
|
+
# Corresponds to the JSON property `type`
|
675
|
+
# @return [String]
|
676
|
+
attr_accessor :type
|
677
|
+
|
889
678
|
# The end position of the range on the reference, 0-based exclusive.
|
890
679
|
# Corresponds to the JSON property `end`
|
891
680
|
# @return [String]
|
@@ -920,23 +709,15 @@ module Google
|
|
920
709
|
# @return [Google::Apis::GenomicsV1::VariantAnnotation]
|
921
710
|
attr_accessor :variant
|
922
711
|
|
923
|
-
# The server-generated annotation ID, unique across all annotations.
|
924
|
-
# Corresponds to the JSON property `id`
|
925
|
-
# @return [String]
|
926
|
-
attr_accessor :id
|
927
|
-
|
928
712
|
# The ID of the Google Genomics reference associated with this range.
|
929
713
|
# Corresponds to the JSON property `referenceId`
|
930
714
|
# @return [String]
|
931
715
|
attr_accessor :reference_id
|
932
716
|
|
933
|
-
#
|
934
|
-
#
|
935
|
-
#
|
936
|
-
|
937
|
-
# @return [Boolean]
|
938
|
-
attr_accessor :reverse_strand
|
939
|
-
alias_method :reverse_strand?, :reverse_strand
|
717
|
+
# The server-generated annotation ID, unique across all annotations.
|
718
|
+
# Corresponds to the JSON property `id`
|
719
|
+
# @return [String]
|
720
|
+
attr_accessor :id
|
940
721
|
|
941
722
|
def initialize(**args)
|
942
723
|
update!(**args)
|
@@ -944,53 +725,18 @@ module Google
|
|
944
725
|
|
945
726
|
# Update properties of this object
|
946
727
|
def update!(**args)
|
728
|
+
@reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
|
947
729
|
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
948
|
-
@type = args[:type] if args.key?(:type)
|
949
730
|
@info = args[:info] if args.key?(:info)
|
731
|
+
@type = args[:type] if args.key?(:type)
|
950
732
|
@end = args[:end] if args.key?(:end)
|
951
733
|
@transcript = args[:transcript] if args.key?(:transcript)
|
952
734
|
@start = args[:start] if args.key?(:start)
|
953
735
|
@annotation_set_id = args[:annotation_set_id] if args.key?(:annotation_set_id)
|
954
736
|
@name = args[:name] if args.key?(:name)
|
955
737
|
@variant = args[:variant] if args.key?(:variant)
|
956
|
-
@id = args[:id] if args.key?(:id)
|
957
738
|
@reference_id = args[:reference_id] if args.key?(:reference_id)
|
958
|
-
@
|
959
|
-
end
|
960
|
-
end
|
961
|
-
|
962
|
-
# The request message for Operations.CancelOperation.
|
963
|
-
class CancelOperationRequest
|
964
|
-
include Google::Apis::Core::Hashable
|
965
|
-
|
966
|
-
def initialize(**args)
|
967
|
-
update!(**args)
|
968
|
-
end
|
969
|
-
|
970
|
-
# Update properties of this object
|
971
|
-
def update!(**args)
|
972
|
-
end
|
973
|
-
end
|
974
|
-
|
975
|
-
# Runtime metadata that will be populated in the
|
976
|
-
# runtimeMetadata
|
977
|
-
# field of the Operation associated with a RunPipeline execution.
|
978
|
-
class RuntimeMetadata
|
979
|
-
include Google::Apis::Core::Hashable
|
980
|
-
|
981
|
-
# Describes a Compute Engine resource that is being managed by a running
|
982
|
-
# pipeline.
|
983
|
-
# Corresponds to the JSON property `computeEngine`
|
984
|
-
# @return [Google::Apis::GenomicsV1::ComputeEngine]
|
985
|
-
attr_accessor :compute_engine
|
986
|
-
|
987
|
-
def initialize(**args)
|
988
|
-
update!(**args)
|
989
|
-
end
|
990
|
-
|
991
|
-
# Update properties of this object
|
992
|
-
def update!(**args)
|
993
|
-
@compute_engine = args[:compute_engine] if args.key?(:compute_engine)
|
739
|
+
@id = args[:id] if args.key?(:id)
|
994
740
|
end
|
995
741
|
end
|
996
742
|
|
@@ -999,14 +745,6 @@ module Google
|
|
999
745
|
class Operation
|
1000
746
|
include Google::Apis::Core::Hashable
|
1001
747
|
|
1002
|
-
# If the value is `false`, it means the operation is still in progress.
|
1003
|
-
# If true, the operation is completed, and either `error` or `response` is
|
1004
|
-
# available.
|
1005
|
-
# Corresponds to the JSON property `done`
|
1006
|
-
# @return [Boolean]
|
1007
|
-
attr_accessor :done
|
1008
|
-
alias_method :done?, :done
|
1009
|
-
|
1010
748
|
# If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
|
1011
749
|
# importing Variants, an ImportVariantsResponse is returned. For pipelines and
|
1012
750
|
# exports, an empty response is returned.
|
@@ -1069,17 +807,47 @@ module Google
|
|
1069
807
|
# @return [Hash<String,Object>]
|
1070
808
|
attr_accessor :metadata
|
1071
809
|
|
810
|
+
# If the value is `false`, it means the operation is still in progress.
|
811
|
+
# If true, the operation is completed, and either `error` or `response` is
|
812
|
+
# available.
|
813
|
+
# Corresponds to the JSON property `done`
|
814
|
+
# @return [Boolean]
|
815
|
+
attr_accessor :done
|
816
|
+
alias_method :done?, :done
|
817
|
+
|
1072
818
|
def initialize(**args)
|
1073
819
|
update!(**args)
|
1074
820
|
end
|
1075
821
|
|
1076
822
|
# Update properties of this object
|
1077
823
|
def update!(**args)
|
1078
|
-
@done = args[:done] if args.key?(:done)
|
1079
824
|
@response = args[:response] if args.key?(:response)
|
1080
825
|
@name = args[:name] if args.key?(:name)
|
1081
826
|
@error = args[:error] if args.key?(:error)
|
1082
827
|
@metadata = args[:metadata] if args.key?(:metadata)
|
828
|
+
@done = args[:done] if args.key?(:done)
|
829
|
+
end
|
830
|
+
end
|
831
|
+
|
832
|
+
# Runtime metadata that will be populated in the
|
833
|
+
# runtimeMetadata
|
834
|
+
# field of the Operation associated with a RunPipeline execution.
|
835
|
+
class RuntimeMetadata
|
836
|
+
include Google::Apis::Core::Hashable
|
837
|
+
|
838
|
+
# Describes a Compute Engine resource that is being managed by a running
|
839
|
+
# pipeline.
|
840
|
+
# Corresponds to the JSON property `computeEngine`
|
841
|
+
# @return [Google::Apis::GenomicsV1::ComputeEngine]
|
842
|
+
attr_accessor :compute_engine
|
843
|
+
|
844
|
+
def initialize(**args)
|
845
|
+
update!(**args)
|
846
|
+
end
|
847
|
+
|
848
|
+
# Update properties of this object
|
849
|
+
def update!(**args)
|
850
|
+
@compute_engine = args[:compute_engine] if args.key?(:compute_engine)
|
1083
851
|
end
|
1084
852
|
end
|
1085
853
|
|
@@ -1109,6 +877,26 @@ module Google
|
|
1109
877
|
class VariantCall
|
1110
878
|
include Google::Apis::Core::Hashable
|
1111
879
|
|
880
|
+
# The name of the call set this variant call belongs to.
|
881
|
+
# Corresponds to the JSON property `callSetName`
|
882
|
+
# @return [String]
|
883
|
+
attr_accessor :call_set_name
|
884
|
+
|
885
|
+
# The genotype likelihoods for this variant call. Each array entry
|
886
|
+
# represents how likely a specific genotype is for this call. The value
|
887
|
+
# ordering is defined by the GL tag in the VCF spec.
|
888
|
+
# If Phred-scaled genotype likelihood scores (PL) are available and
|
889
|
+
# log10(P) genotype likelihood scores (GL) are not, PL scores are converted
|
890
|
+
# to GL scores. If both are available, PL scores are stored in `info`.
|
891
|
+
# Corresponds to the JSON property `genotypeLikelihood`
|
892
|
+
# @return [Array<Float>]
|
893
|
+
attr_accessor :genotype_likelihood
|
894
|
+
|
895
|
+
# The ID of the call set this variant call belongs to.
|
896
|
+
# Corresponds to the JSON property `callSetId`
|
897
|
+
# @return [String]
|
898
|
+
attr_accessor :call_set_id
|
899
|
+
|
1112
900
|
# The genotype of this variant call. Each value represents either the value
|
1113
901
|
# of the `referenceBases` field or a 1-based index into
|
1114
902
|
# `alternateBases`. If a variant had a `referenceBases`
|
@@ -1140,38 +928,18 @@ module Google
|
|
1140
928
|
# @return [Hash<String,Array<Object>>]
|
1141
929
|
attr_accessor :info
|
1142
930
|
|
1143
|
-
# The name of the call set this variant call belongs to.
|
1144
|
-
# Corresponds to the JSON property `callSetName`
|
1145
|
-
# @return [String]
|
1146
|
-
attr_accessor :call_set_name
|
1147
|
-
|
1148
|
-
# The genotype likelihoods for this variant call. Each array entry
|
1149
|
-
# represents how likely a specific genotype is for this call. The value
|
1150
|
-
# ordering is defined by the GL tag in the VCF spec.
|
1151
|
-
# If Phred-scaled genotype likelihood scores (PL) are available and
|
1152
|
-
# log10(P) genotype likelihood scores (GL) are not, PL scores are converted
|
1153
|
-
# to GL scores. If both are available, PL scores are stored in `info`.
|
1154
|
-
# Corresponds to the JSON property `genotypeLikelihood`
|
1155
|
-
# @return [Array<Float>]
|
1156
|
-
attr_accessor :genotype_likelihood
|
1157
|
-
|
1158
|
-
# The ID of the call set this variant call belongs to.
|
1159
|
-
# Corresponds to the JSON property `callSetId`
|
1160
|
-
# @return [String]
|
1161
|
-
attr_accessor :call_set_id
|
1162
|
-
|
1163
931
|
def initialize(**args)
|
1164
932
|
update!(**args)
|
1165
933
|
end
|
1166
934
|
|
1167
935
|
# Update properties of this object
|
1168
936
|
def update!(**args)
|
1169
|
-
@genotype = args[:genotype] if args.key?(:genotype)
|
1170
|
-
@phaseset = args[:phaseset] if args.key?(:phaseset)
|
1171
|
-
@info = args[:info] if args.key?(:info)
|
1172
937
|
@call_set_name = args[:call_set_name] if args.key?(:call_set_name)
|
1173
938
|
@genotype_likelihood = args[:genotype_likelihood] if args.key?(:genotype_likelihood)
|
1174
939
|
@call_set_id = args[:call_set_id] if args.key?(:call_set_id)
|
940
|
+
@genotype = args[:genotype] if args.key?(:genotype)
|
941
|
+
@phaseset = args[:phaseset] if args.key?(:phaseset)
|
942
|
+
@info = args[:info] if args.key?(:info)
|
1175
943
|
end
|
1176
944
|
end
|
1177
945
|
|
@@ -1206,13 +974,6 @@ module Google
|
|
1206
974
|
class ListBasesResponse
|
1207
975
|
include Google::Apis::Core::Hashable
|
1208
976
|
|
1209
|
-
# The offset position (0-based) of the given `sequence` from the
|
1210
|
-
# start of this `Reference`. This value will differ for each page
|
1211
|
-
# in a paginated request.
|
1212
|
-
# Corresponds to the JSON property `offset`
|
1213
|
-
# @return [String]
|
1214
|
-
attr_accessor :offset
|
1215
|
-
|
1216
977
|
# The continuation token, which is used to page through large result sets.
|
1217
978
|
# Provide this value in a subsequent request to return the next page of
|
1218
979
|
# results. This field will be empty if there aren't any additional results.
|
@@ -1225,15 +986,22 @@ module Google
|
|
1225
986
|
# @return [String]
|
1226
987
|
attr_accessor :sequence
|
1227
988
|
|
989
|
+
# The offset position (0-based) of the given `sequence` from the
|
990
|
+
# start of this `Reference`. This value will differ for each page
|
991
|
+
# in a paginated request.
|
992
|
+
# Corresponds to the JSON property `offset`
|
993
|
+
# @return [String]
|
994
|
+
attr_accessor :offset
|
995
|
+
|
1228
996
|
def initialize(**args)
|
1229
997
|
update!(**args)
|
1230
998
|
end
|
1231
999
|
|
1232
1000
|
# Update properties of this object
|
1233
1001
|
def update!(**args)
|
1234
|
-
@offset = args[:offset] if args.key?(:offset)
|
1235
1002
|
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
1236
1003
|
@sequence = args[:sequence] if args.key?(:sequence)
|
1004
|
+
@offset = args[:offset] if args.key?(:offset)
|
1237
1005
|
end
|
1238
1006
|
end
|
1239
1007
|
|
@@ -1309,19 +1077,6 @@ module Google
|
|
1309
1077
|
end
|
1310
1078
|
end
|
1311
1079
|
|
1312
|
-
#
|
1313
|
-
class UndeleteDatasetRequest
|
1314
|
-
include Google::Apis::Core::Hashable
|
1315
|
-
|
1316
|
-
def initialize(**args)
|
1317
|
-
update!(**args)
|
1318
|
-
end
|
1319
|
-
|
1320
|
-
# Update properties of this object
|
1321
|
-
def update!(**args)
|
1322
|
-
end
|
1323
|
-
end
|
1324
|
-
|
1325
1080
|
# Associates `members` with a `role`.
|
1326
1081
|
class Binding
|
1327
1082
|
include Google::Apis::Core::Hashable
|
@@ -1362,10 +1117,29 @@ module Google
|
|
1362
1117
|
end
|
1363
1118
|
end
|
1364
1119
|
|
1120
|
+
#
|
1121
|
+
class UndeleteDatasetRequest
|
1122
|
+
include Google::Apis::Core::Hashable
|
1123
|
+
|
1124
|
+
def initialize(**args)
|
1125
|
+
update!(**args)
|
1126
|
+
end
|
1127
|
+
|
1128
|
+
# Update properties of this object
|
1129
|
+
def update!(**args)
|
1130
|
+
end
|
1131
|
+
end
|
1132
|
+
|
1365
1133
|
# A 0-based half-open genomic coordinate range for search requests.
|
1366
1134
|
class Range
|
1367
1135
|
include Google::Apis::Core::Hashable
|
1368
1136
|
|
1137
|
+
# The reference sequence name, for example `chr1`,
|
1138
|
+
# `1`, or `chrX`.
|
1139
|
+
# Corresponds to the JSON property `referenceName`
|
1140
|
+
# @return [String]
|
1141
|
+
attr_accessor :reference_name
|
1142
|
+
|
1369
1143
|
# The start position of the range on the reference, 0-based inclusive.
|
1370
1144
|
# Corresponds to the JSON property `start`
|
1371
1145
|
# @return [String]
|
@@ -1376,21 +1150,15 @@ module Google
|
|
1376
1150
|
# @return [String]
|
1377
1151
|
attr_accessor :end
|
1378
1152
|
|
1379
|
-
# The reference sequence name, for example `chr1`,
|
1380
|
-
# `1`, or `chrX`.
|
1381
|
-
# Corresponds to the JSON property `referenceName`
|
1382
|
-
# @return [String]
|
1383
|
-
attr_accessor :reference_name
|
1384
|
-
|
1385
1153
|
def initialize(**args)
|
1386
1154
|
update!(**args)
|
1387
1155
|
end
|
1388
1156
|
|
1389
1157
|
# Update properties of this object
|
1390
1158
|
def update!(**args)
|
1159
|
+
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
1391
1160
|
@start = args[:start] if args.key?(:start)
|
1392
1161
|
@end = args[:end] if args.key?(:end)
|
1393
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
1394
1162
|
end
|
1395
1163
|
end
|
1396
1164
|
|
@@ -1512,11 +1280,6 @@ module Google
|
|
1512
1280
|
class SearchCallSetsResponse
|
1513
1281
|
include Google::Apis::Core::Hashable
|
1514
1282
|
|
1515
|
-
# The list of matching call sets.
|
1516
|
-
# Corresponds to the JSON property `callSets`
|
1517
|
-
# @return [Array<Google::Apis::GenomicsV1::CallSet>]
|
1518
|
-
attr_accessor :call_sets
|
1519
|
-
|
1520
1283
|
# The continuation token, which is used to page through large result sets.
|
1521
1284
|
# Provide this value in a subsequent request to return the next page of
|
1522
1285
|
# results. This field will be empty if there aren't any additional results.
|
@@ -1524,14 +1287,19 @@ module Google
|
|
1524
1287
|
# @return [String]
|
1525
1288
|
attr_accessor :next_page_token
|
1526
1289
|
|
1290
|
+
# The list of matching call sets.
|
1291
|
+
# Corresponds to the JSON property `callSets`
|
1292
|
+
# @return [Array<Google::Apis::GenomicsV1::CallSet>]
|
1293
|
+
attr_accessor :call_sets
|
1294
|
+
|
1527
1295
|
def initialize(**args)
|
1528
1296
|
update!(**args)
|
1529
1297
|
end
|
1530
1298
|
|
1531
1299
|
# Update properties of this object
|
1532
1300
|
def update!(**args)
|
1533
|
-
@call_sets = args[:call_sets] if args.key?(:call_sets)
|
1534
1301
|
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
1302
|
+
@call_sets = args[:call_sets] if args.key?(:call_sets)
|
1535
1303
|
end
|
1536
1304
|
end
|
1537
1305
|
|
@@ -1548,6 +1316,12 @@ module Google
|
|
1548
1316
|
class Variant
|
1549
1317
|
include Google::Apis::Core::Hashable
|
1550
1318
|
|
1319
|
+
# The reference on which this variant occurs.
|
1320
|
+
# (such as `chr20` or `X`)
|
1321
|
+
# Corresponds to the JSON property `referenceName`
|
1322
|
+
# @return [String]
|
1323
|
+
attr_accessor :reference_name
|
1324
|
+
|
1551
1325
|
# A map of additional variant information. This must be of the form
|
1552
1326
|
# map<string, string[]> (string key mapping to a list of string values).
|
1553
1327
|
# Corresponds to the JSON property `info`
|
@@ -1560,15 +1334,21 @@ module Google
|
|
1560
1334
|
# @return [String]
|
1561
1335
|
attr_accessor :reference_bases
|
1562
1336
|
|
1337
|
+
# The bases that appear instead of the reference bases.
|
1338
|
+
# Corresponds to the JSON property `alternateBases`
|
1339
|
+
# @return [Array<String>]
|
1340
|
+
attr_accessor :alternate_bases
|
1341
|
+
|
1563
1342
|
# Names for the variant, for example a RefSNP ID.
|
1564
1343
|
# Corresponds to the JSON property `names`
|
1565
1344
|
# @return [Array<String>]
|
1566
1345
|
attr_accessor :names
|
1567
1346
|
|
1568
|
-
#
|
1569
|
-
#
|
1347
|
+
# A list of filters (normally quality filters) this variant has failed.
|
1348
|
+
# `PASS` indicates this variant has passed all filters.
|
1349
|
+
# Corresponds to the JSON property `filter`
|
1570
1350
|
# @return [Array<String>]
|
1571
|
-
attr_accessor :
|
1351
|
+
attr_accessor :filter
|
1572
1352
|
|
1573
1353
|
# The end position (0-based) of this variant. This corresponds to the first
|
1574
1354
|
# base after the last base in the reference allele. So, the length of
|
@@ -1578,12 +1358,6 @@ module Google
|
|
1578
1358
|
# @return [String]
|
1579
1359
|
attr_accessor :end
|
1580
1360
|
|
1581
|
-
# A list of filters (normally quality filters) this variant has failed.
|
1582
|
-
# `PASS` indicates this variant has passed all filters.
|
1583
|
-
# Corresponds to the JSON property `filter`
|
1584
|
-
# @return [Array<String>]
|
1585
|
-
attr_accessor :filter
|
1586
|
-
|
1587
1361
|
# The variant calls for this particular variant. Each one represents the
|
1588
1362
|
# determination of genotype with respect to this variant.
|
1589
1363
|
# Corresponds to the JSON property `calls`
|
@@ -1617,31 +1391,25 @@ module Google
|
|
1617
1391
|
# @return [String]
|
1618
1392
|
attr_accessor :variant_set_id
|
1619
1393
|
|
1620
|
-
# The reference on which this variant occurs.
|
1621
|
-
# (such as `chr20` or `X`)
|
1622
|
-
# Corresponds to the JSON property `referenceName`
|
1623
|
-
# @return [String]
|
1624
|
-
attr_accessor :reference_name
|
1625
|
-
|
1626
1394
|
def initialize(**args)
|
1627
1395
|
update!(**args)
|
1628
1396
|
end
|
1629
1397
|
|
1630
1398
|
# Update properties of this object
|
1631
1399
|
def update!(**args)
|
1400
|
+
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
1632
1401
|
@info = args[:info] if args.key?(:info)
|
1633
1402
|
@reference_bases = args[:reference_bases] if args.key?(:reference_bases)
|
1634
|
-
@names = args[:names] if args.key?(:names)
|
1635
1403
|
@alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
|
1636
|
-
@
|
1404
|
+
@names = args[:names] if args.key?(:names)
|
1637
1405
|
@filter = args[:filter] if args.key?(:filter)
|
1406
|
+
@end = args[:end] if args.key?(:end)
|
1638
1407
|
@calls = args[:calls] if args.key?(:calls)
|
1639
1408
|
@created = args[:created] if args.key?(:created)
|
1640
1409
|
@start = args[:start] if args.key?(:start)
|
1641
1410
|
@quality = args[:quality] if args.key?(:quality)
|
1642
1411
|
@id = args[:id] if args.key?(:id)
|
1643
1412
|
@variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
|
1644
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
1645
1413
|
end
|
1646
1414
|
end
|
1647
1415
|
|
@@ -1649,87 +1417,15 @@ module Google
|
|
1649
1417
|
class ListOperationsResponse
|
1650
1418
|
include Google::Apis::Core::Hashable
|
1651
1419
|
|
1652
|
-
# A list of operations that matches the specified filter in the request.
|
1653
|
-
# Corresponds to the JSON property `operations`
|
1654
|
-
# @return [Array<Google::Apis::GenomicsV1::Operation>]
|
1655
|
-
attr_accessor :operations
|
1656
|
-
|
1657
1420
|
# The standard List next-page token.
|
1658
1421
|
# Corresponds to the JSON property `nextPageToken`
|
1659
1422
|
# @return [String]
|
1660
1423
|
attr_accessor :next_page_token
|
1661
1424
|
|
1662
|
-
|
1663
|
-
|
1664
|
-
|
1665
|
-
|
1666
|
-
# Update properties of this object
|
1667
|
-
def update!(**args)
|
1668
|
-
@operations = args[:operations] if args.key?(:operations)
|
1669
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
1670
|
-
end
|
1671
|
-
end
|
1672
|
-
|
1673
|
-
# The variant search request.
|
1674
|
-
class SearchVariantsRequest
|
1675
|
-
include Google::Apis::Core::Hashable
|
1676
|
-
|
1677
|
-
# At most one variant set ID must be provided. Only variants from this
|
1678
|
-
# variant set will be returned. If omitted, a call set id must be included in
|
1679
|
-
# the request.
|
1680
|
-
# Corresponds to the JSON property `variantSetIds`
|
1681
|
-
# @return [Array<String>]
|
1682
|
-
attr_accessor :variant_set_ids
|
1683
|
-
|
1684
|
-
# The end of the window, 0-based exclusive. If unspecified or 0, defaults to
|
1685
|
-
# the length of the reference.
|
1686
|
-
# Corresponds to the JSON property `end`
|
1687
|
-
# @return [String]
|
1688
|
-
attr_accessor :end
|
1689
|
-
|
1690
|
-
# The maximum number of calls to return in a single page. Note that this
|
1691
|
-
# limit may be exceeded in the event that a matching variant contains more
|
1692
|
-
# calls than the requested maximum. If unspecified, defaults to 5000. The
|
1693
|
-
# maximum value is 10000.
|
1694
|
-
# Corresponds to the JSON property `maxCalls`
|
1695
|
-
# @return [Fixnum]
|
1696
|
-
attr_accessor :max_calls
|
1697
|
-
|
1698
|
-
# The continuation token, which is used to page through large result sets.
|
1699
|
-
# To get the next page of results, set this parameter to the value of
|
1700
|
-
# `nextPageToken` from the previous response.
|
1701
|
-
# Corresponds to the JSON property `pageToken`
|
1702
|
-
# @return [String]
|
1703
|
-
attr_accessor :page_token
|
1704
|
-
|
1705
|
-
# The maximum number of variants to return in a single page. If unspecified,
|
1706
|
-
# defaults to 5000. The maximum value is 10000.
|
1707
|
-
# Corresponds to the JSON property `pageSize`
|
1708
|
-
# @return [Fixnum]
|
1709
|
-
attr_accessor :page_size
|
1710
|
-
|
1711
|
-
# Only return variant calls which belong to call sets with these ids.
|
1712
|
-
# Leaving this blank returns all variant calls. If a variant has no
|
1713
|
-
# calls belonging to any of these call sets, it won't be returned at all.
|
1714
|
-
# Corresponds to the JSON property `callSetIds`
|
1715
|
-
# @return [Array<String>]
|
1716
|
-
attr_accessor :call_set_ids
|
1717
|
-
|
1718
|
-
# The beginning of the window (0-based, inclusive) for which
|
1719
|
-
# overlapping variants should be returned. If unspecified, defaults to 0.
|
1720
|
-
# Corresponds to the JSON property `start`
|
1721
|
-
# @return [String]
|
1722
|
-
attr_accessor :start
|
1723
|
-
|
1724
|
-
# Only return variants which have exactly this name.
|
1725
|
-
# Corresponds to the JSON property `variantName`
|
1726
|
-
# @return [String]
|
1727
|
-
attr_accessor :variant_name
|
1728
|
-
|
1729
|
-
# Required. Only return variants in this reference sequence.
|
1730
|
-
# Corresponds to the JSON property `referenceName`
|
1731
|
-
# @return [String]
|
1732
|
-
attr_accessor :reference_name
|
1425
|
+
# A list of operations that matches the specified filter in the request.
|
1426
|
+
# Corresponds to the JSON property `operations`
|
1427
|
+
# @return [Array<Google::Apis::GenomicsV1::Operation>]
|
1428
|
+
attr_accessor :operations
|
1733
1429
|
|
1734
1430
|
def initialize(**args)
|
1735
1431
|
update!(**args)
|
@@ -1737,15 +1433,8 @@ module Google
|
|
1737
1433
|
|
1738
1434
|
# Update properties of this object
|
1739
1435
|
def update!(**args)
|
1740
|
-
@
|
1741
|
-
@
|
1742
|
-
@max_calls = args[:max_calls] if args.key?(:max_calls)
|
1743
|
-
@page_token = args[:page_token] if args.key?(:page_token)
|
1744
|
-
@page_size = args[:page_size] if args.key?(:page_size)
|
1745
|
-
@call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
|
1746
|
-
@start = args[:start] if args.key?(:start)
|
1747
|
-
@variant_name = args[:variant_name] if args.key?(:variant_name)
|
1748
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
1436
|
+
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
1437
|
+
@operations = args[:operations] if args.key?(:operations)
|
1749
1438
|
end
|
1750
1439
|
end
|
1751
1440
|
|
@@ -1822,15 +1511,22 @@ module Google
|
|
1822
1511
|
end
|
1823
1512
|
end
|
1824
1513
|
|
1825
|
-
# The
|
1826
|
-
class
|
1514
|
+
# The variant search request.
|
1515
|
+
class SearchVariantsRequest
|
1827
1516
|
include Google::Apis::Core::Hashable
|
1828
1517
|
|
1829
|
-
#
|
1830
|
-
#
|
1831
|
-
#
|
1518
|
+
# At most one variant set ID must be provided. Only variants from this
|
1519
|
+
# variant set will be returned. If omitted, a call set id must be included in
|
1520
|
+
# the request.
|
1521
|
+
# Corresponds to the JSON property `variantSetIds`
|
1522
|
+
# @return [Array<String>]
|
1523
|
+
attr_accessor :variant_set_ids
|
1524
|
+
|
1525
|
+
# The end of the window, 0-based exclusive. If unspecified or 0, defaults to
|
1526
|
+
# the length of the reference.
|
1527
|
+
# Corresponds to the JSON property `end`
|
1832
1528
|
# @return [String]
|
1833
|
-
attr_accessor :
|
1529
|
+
attr_accessor :end
|
1834
1530
|
|
1835
1531
|
# The continuation token, which is used to page through large result sets.
|
1836
1532
|
# To get the next page of results, set this parameter to the value of
|
@@ -1839,30 +1535,102 @@ module Google
|
|
1839
1535
|
# @return [String]
|
1840
1536
|
attr_accessor :page_token
|
1841
1537
|
|
1842
|
-
# The maximum number of
|
1843
|
-
#
|
1538
|
+
# The maximum number of calls to return in a single page. Note that this
|
1539
|
+
# limit may be exceeded in the event that a matching variant contains more
|
1540
|
+
# calls than the requested maximum. If unspecified, defaults to 5000. The
|
1541
|
+
# maximum value is 10000.
|
1542
|
+
# Corresponds to the JSON property `maxCalls`
|
1543
|
+
# @return [Fixnum]
|
1544
|
+
attr_accessor :max_calls
|
1545
|
+
|
1546
|
+
# The maximum number of variants to return in a single page. If unspecified,
|
1547
|
+
# defaults to 5000. The maximum value is 10000.
|
1844
1548
|
# Corresponds to the JSON property `pageSize`
|
1845
1549
|
# @return [Fixnum]
|
1846
1550
|
attr_accessor :page_size
|
1847
1551
|
|
1848
|
-
#
|
1849
|
-
#
|
1850
|
-
#
|
1552
|
+
# Only return variant calls which belong to call sets with these ids.
|
1553
|
+
# Leaving this blank returns all variant calls. If a variant has no
|
1554
|
+
# calls belonging to any of these call sets, it won't be returned at all.
|
1555
|
+
# Corresponds to the JSON property `callSetIds`
|
1851
1556
|
# @return [Array<String>]
|
1852
|
-
attr_accessor :
|
1557
|
+
attr_accessor :call_set_ids
|
1853
1558
|
|
1854
|
-
|
1855
|
-
|
1856
|
-
|
1559
|
+
# Only return variants which have exactly this name.
|
1560
|
+
# Corresponds to the JSON property `variantName`
|
1561
|
+
# @return [String]
|
1562
|
+
attr_accessor :variant_name
|
1857
1563
|
|
1858
|
-
#
|
1859
|
-
|
1860
|
-
|
1861
|
-
|
1862
|
-
|
1863
|
-
|
1864
|
-
|
1865
|
-
|
1564
|
+
# The beginning of the window (0-based, inclusive) for which
|
1565
|
+
# overlapping variants should be returned. If unspecified, defaults to 0.
|
1566
|
+
# Corresponds to the JSON property `start`
|
1567
|
+
# @return [String]
|
1568
|
+
attr_accessor :start
|
1569
|
+
|
1570
|
+
# Required. Only return variants in this reference sequence.
|
1571
|
+
# Corresponds to the JSON property `referenceName`
|
1572
|
+
# @return [String]
|
1573
|
+
attr_accessor :reference_name
|
1574
|
+
|
1575
|
+
def initialize(**args)
|
1576
|
+
update!(**args)
|
1577
|
+
end
|
1578
|
+
|
1579
|
+
# Update properties of this object
|
1580
|
+
def update!(**args)
|
1581
|
+
@variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
|
1582
|
+
@end = args[:end] if args.key?(:end)
|
1583
|
+
@page_token = args[:page_token] if args.key?(:page_token)
|
1584
|
+
@max_calls = args[:max_calls] if args.key?(:max_calls)
|
1585
|
+
@page_size = args[:page_size] if args.key?(:page_size)
|
1586
|
+
@call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
|
1587
|
+
@variant_name = args[:variant_name] if args.key?(:variant_name)
|
1588
|
+
@start = args[:start] if args.key?(:start)
|
1589
|
+
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
1590
|
+
end
|
1591
|
+
end
|
1592
|
+
|
1593
|
+
# The read group set search request.
|
1594
|
+
class SearchReadGroupSetsRequest
|
1595
|
+
include Google::Apis::Core::Hashable
|
1596
|
+
|
1597
|
+
# Restricts this query to read group sets within the given datasets. At least
|
1598
|
+
# one ID must be provided.
|
1599
|
+
# Corresponds to the JSON property `datasetIds`
|
1600
|
+
# @return [Array<String>]
|
1601
|
+
attr_accessor :dataset_ids
|
1602
|
+
|
1603
|
+
# Only return read group sets for which a substring of the name matches this
|
1604
|
+
# string.
|
1605
|
+
# Corresponds to the JSON property `name`
|
1606
|
+
# @return [String]
|
1607
|
+
attr_accessor :name
|
1608
|
+
|
1609
|
+
# The continuation token, which is used to page through large result sets.
|
1610
|
+
# To get the next page of results, set this parameter to the value of
|
1611
|
+
# `nextPageToken` from the previous response.
|
1612
|
+
# Corresponds to the JSON property `pageToken`
|
1613
|
+
# @return [String]
|
1614
|
+
attr_accessor :page_token
|
1615
|
+
|
1616
|
+
# The maximum number of results to return in a single page. If unspecified,
|
1617
|
+
# defaults to 256. The maximum value is 1024.
|
1618
|
+
# Corresponds to the JSON property `pageSize`
|
1619
|
+
# @return [Fixnum]
|
1620
|
+
attr_accessor :page_size
|
1621
|
+
|
1622
|
+
def initialize(**args)
|
1623
|
+
update!(**args)
|
1624
|
+
end
|
1625
|
+
|
1626
|
+
# Update properties of this object
|
1627
|
+
def update!(**args)
|
1628
|
+
@dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
|
1629
|
+
@name = args[:name] if args.key?(:name)
|
1630
|
+
@page_token = args[:page_token] if args.key?(:page_token)
|
1631
|
+
@page_size = args[:page_size] if args.key?(:page_size)
|
1632
|
+
end
|
1633
|
+
end
|
1866
1634
|
|
1867
1635
|
#
|
1868
1636
|
class SearchAnnotationsResponse
|
@@ -1895,6 +1663,13 @@ module Google
|
|
1895
1663
|
class SearchReadsResponse
|
1896
1664
|
include Google::Apis::Core::Hashable
|
1897
1665
|
|
1666
|
+
# The continuation token, which is used to page through large result sets.
|
1667
|
+
# Provide this value in a subsequent request to return the next page of
|
1668
|
+
# results. This field will be empty if there aren't any additional results.
|
1669
|
+
# Corresponds to the JSON property `nextPageToken`
|
1670
|
+
# @return [String]
|
1671
|
+
attr_accessor :next_page_token
|
1672
|
+
|
1898
1673
|
# The list of matching alignments sorted by mapped genomic coordinate,
|
1899
1674
|
# if any, ascending in position within the same reference. Unmapped reads,
|
1900
1675
|
# which have no position, are returned contiguously and are sorted in
|
@@ -1903,21 +1678,14 @@ module Google
|
|
1903
1678
|
# @return [Array<Google::Apis::GenomicsV1::Read>]
|
1904
1679
|
attr_accessor :alignments
|
1905
1680
|
|
1906
|
-
# The continuation token, which is used to page through large result sets.
|
1907
|
-
# Provide this value in a subsequent request to return the next page of
|
1908
|
-
# results. This field will be empty if there aren't any additional results.
|
1909
|
-
# Corresponds to the JSON property `nextPageToken`
|
1910
|
-
# @return [String]
|
1911
|
-
attr_accessor :next_page_token
|
1912
|
-
|
1913
1681
|
def initialize(**args)
|
1914
1682
|
update!(**args)
|
1915
1683
|
end
|
1916
1684
|
|
1917
1685
|
# Update properties of this object
|
1918
1686
|
def update!(**args)
|
1919
|
-
@alignments = args[:alignments] if args.key?(:alignments)
|
1920
1687
|
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
1688
|
+
@alignments = args[:alignments] if args.key?(:alignments)
|
1921
1689
|
end
|
1922
1690
|
end
|
1923
1691
|
|
@@ -1925,6 +1693,12 @@ module Google
|
|
1925
1693
|
class ClinicalCondition
|
1926
1694
|
include Google::Apis::Core::Hashable
|
1927
1695
|
|
1696
|
+
# The MedGen concept id associated with this gene.
|
1697
|
+
# Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
|
1698
|
+
# Corresponds to the JSON property `conceptId`
|
1699
|
+
# @return [String]
|
1700
|
+
attr_accessor :concept_id
|
1701
|
+
|
1928
1702
|
# A set of names for the condition.
|
1929
1703
|
# Corresponds to the JSON property `names`
|
1930
1704
|
# @return [Array<String>]
|
@@ -1941,22 +1715,16 @@ module Google
|
|
1941
1715
|
# @return [Array<Google::Apis::GenomicsV1::ExternalId>]
|
1942
1716
|
attr_accessor :external_ids
|
1943
1717
|
|
1944
|
-
# The MedGen concept id associated with this gene.
|
1945
|
-
# Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
|
1946
|
-
# Corresponds to the JSON property `conceptId`
|
1947
|
-
# @return [String]
|
1948
|
-
attr_accessor :concept_id
|
1949
|
-
|
1950
1718
|
def initialize(**args)
|
1951
1719
|
update!(**args)
|
1952
1720
|
end
|
1953
1721
|
|
1954
1722
|
# Update properties of this object
|
1955
1723
|
def update!(**args)
|
1724
|
+
@concept_id = args[:concept_id] if args.key?(:concept_id)
|
1956
1725
|
@names = args[:names] if args.key?(:names)
|
1957
1726
|
@omim_id = args[:omim_id] if args.key?(:omim_id)
|
1958
1727
|
@external_ids = args[:external_ids] if args.key?(:external_ids)
|
1959
|
-
@concept_id = args[:concept_id] if args.key?(:concept_id)
|
1960
1728
|
end
|
1961
1729
|
end
|
1962
1730
|
|
@@ -1964,6 +1732,16 @@ module Google
|
|
1964
1732
|
class Program
|
1965
1733
|
include Google::Apis::Core::Hashable
|
1966
1734
|
|
1735
|
+
# The command line used to run this program.
|
1736
|
+
# Corresponds to the JSON property `commandLine`
|
1737
|
+
# @return [String]
|
1738
|
+
attr_accessor :command_line
|
1739
|
+
|
1740
|
+
# The ID of the program run before this one.
|
1741
|
+
# Corresponds to the JSON property `prevProgramId`
|
1742
|
+
# @return [String]
|
1743
|
+
attr_accessor :prev_program_id
|
1744
|
+
|
1967
1745
|
# The user specified locally unique ID of the program. Used along with
|
1968
1746
|
# `prevProgramId` to define an ordering between programs.
|
1969
1747
|
# Corresponds to the JSON property `id`
|
@@ -1981,15 +1759,44 @@ module Google
|
|
1981
1759
|
# @return [String]
|
1982
1760
|
attr_accessor :name
|
1983
1761
|
|
1984
|
-
|
1985
|
-
|
1762
|
+
def initialize(**args)
|
1763
|
+
update!(**args)
|
1764
|
+
end
|
1765
|
+
|
1766
|
+
# Update properties of this object
|
1767
|
+
def update!(**args)
|
1768
|
+
@command_line = args[:command_line] if args.key?(:command_line)
|
1769
|
+
@prev_program_id = args[:prev_program_id] if args.key?(:prev_program_id)
|
1770
|
+
@id = args[:id] if args.key?(:id)
|
1771
|
+
@version = args[:version] if args.key?(:version)
|
1772
|
+
@name = args[:name] if args.key?(:name)
|
1773
|
+
end
|
1774
|
+
end
|
1775
|
+
|
1776
|
+
# Describes a Compute Engine resource that is being managed by a running
|
1777
|
+
# pipeline.
|
1778
|
+
class ComputeEngine
|
1779
|
+
include Google::Apis::Core::Hashable
|
1780
|
+
|
1781
|
+
# The machine type of the instance.
|
1782
|
+
# Corresponds to the JSON property `machineType`
|
1986
1783
|
# @return [String]
|
1987
|
-
attr_accessor :
|
1784
|
+
attr_accessor :machine_type
|
1988
1785
|
|
1989
|
-
# The
|
1990
|
-
# Corresponds to the JSON property `
|
1786
|
+
# The names of the disks that were created for this pipeline.
|
1787
|
+
# Corresponds to the JSON property `diskNames`
|
1788
|
+
# @return [Array<String>]
|
1789
|
+
attr_accessor :disk_names
|
1790
|
+
|
1791
|
+
# The instance on which the operation is running.
|
1792
|
+
# Corresponds to the JSON property `instanceName`
|
1991
1793
|
# @return [String]
|
1992
|
-
attr_accessor :
|
1794
|
+
attr_accessor :instance_name
|
1795
|
+
|
1796
|
+
# The availability zone in which the instance resides.
|
1797
|
+
# Corresponds to the JSON property `zone`
|
1798
|
+
# @return [String]
|
1799
|
+
attr_accessor :zone
|
1993
1800
|
|
1994
1801
|
def initialize(**args)
|
1995
1802
|
update!(**args)
|
@@ -1997,11 +1804,10 @@ module Google
|
|
1997
1804
|
|
1998
1805
|
# Update properties of this object
|
1999
1806
|
def update!(**args)
|
2000
|
-
@
|
2001
|
-
@
|
2002
|
-
@
|
2003
|
-
@
|
2004
|
-
@prev_program_id = args[:prev_program_id] if args.key?(:prev_program_id)
|
1807
|
+
@machine_type = args[:machine_type] if args.key?(:machine_type)
|
1808
|
+
@disk_names = args[:disk_names] if args.key?(:disk_names)
|
1809
|
+
@instance_name = args[:instance_name] if args.key?(:instance_name)
|
1810
|
+
@zone = args[:zone] if args.key?(:zone)
|
2005
1811
|
end
|
2006
1812
|
end
|
2007
1813
|
|
@@ -2032,66 +1838,28 @@ module Google
|
|
2032
1838
|
end
|
2033
1839
|
end
|
2034
1840
|
|
2035
|
-
# Describes a Compute Engine resource that is being managed by a running
|
2036
|
-
# pipeline.
|
2037
|
-
class ComputeEngine
|
2038
|
-
include Google::Apis::Core::Hashable
|
2039
|
-
|
2040
|
-
# The instance on which the operation is running.
|
2041
|
-
# Corresponds to the JSON property `instanceName`
|
2042
|
-
# @return [String]
|
2043
|
-
attr_accessor :instance_name
|
2044
|
-
|
2045
|
-
# The availability zone in which the instance resides.
|
2046
|
-
# Corresponds to the JSON property `zone`
|
2047
|
-
# @return [String]
|
2048
|
-
attr_accessor :zone
|
2049
|
-
|
2050
|
-
# The machine type of the instance.
|
2051
|
-
# Corresponds to the JSON property `machineType`
|
2052
|
-
# @return [String]
|
2053
|
-
attr_accessor :machine_type
|
2054
|
-
|
2055
|
-
# The names of the disks that were created for this pipeline.
|
2056
|
-
# Corresponds to the JSON property `diskNames`
|
2057
|
-
# @return [Array<String>]
|
2058
|
-
attr_accessor :disk_names
|
2059
|
-
|
2060
|
-
def initialize(**args)
|
2061
|
-
update!(**args)
|
2062
|
-
end
|
2063
|
-
|
2064
|
-
# Update properties of this object
|
2065
|
-
def update!(**args)
|
2066
|
-
@instance_name = args[:instance_name] if args.key?(:instance_name)
|
2067
|
-
@zone = args[:zone] if args.key?(:zone)
|
2068
|
-
@machine_type = args[:machine_type] if args.key?(:machine_type)
|
2069
|
-
@disk_names = args[:disk_names] if args.key?(:disk_names)
|
2070
|
-
end
|
2071
|
-
end
|
2072
|
-
|
2073
1841
|
#
|
2074
1842
|
class ExternalId
|
2075
1843
|
include Google::Apis::Core::Hashable
|
2076
1844
|
|
2077
|
-
# The id used by the source of this data.
|
2078
|
-
# Corresponds to the JSON property `id`
|
2079
|
-
# @return [String]
|
2080
|
-
attr_accessor :id
|
2081
|
-
|
2082
1845
|
# The name of the source of this data.
|
2083
1846
|
# Corresponds to the JSON property `sourceName`
|
2084
1847
|
# @return [String]
|
2085
1848
|
attr_accessor :source_name
|
2086
1849
|
|
1850
|
+
# The id used by the source of this data.
|
1851
|
+
# Corresponds to the JSON property `id`
|
1852
|
+
# @return [String]
|
1853
|
+
attr_accessor :id
|
1854
|
+
|
2087
1855
|
def initialize(**args)
|
2088
1856
|
update!(**args)
|
2089
1857
|
end
|
2090
1858
|
|
2091
1859
|
# Update properties of this object
|
2092
1860
|
def update!(**args)
|
2093
|
-
@id = args[:id] if args.key?(:id)
|
2094
1861
|
@source_name = args[:source_name] if args.key?(:source_name)
|
1862
|
+
@id = args[:id] if args.key?(:id)
|
2095
1863
|
end
|
2096
1864
|
end
|
2097
1865
|
|
@@ -2137,18 +1905,6 @@ module Google
|
|
2137
1905
|
class VariantSetMetadata
|
2138
1906
|
include Google::Apis::Core::Hashable
|
2139
1907
|
|
2140
|
-
# The type of data. Possible types include: Integer, Float,
|
2141
|
-
# Flag, Character, and String.
|
2142
|
-
# Corresponds to the JSON property `type`
|
2143
|
-
# @return [String]
|
2144
|
-
attr_accessor :type
|
2145
|
-
|
2146
|
-
# Remaining structured metadata key-value pairs. This must be of the form
|
2147
|
-
# map<string, string[]> (string key mapping to a list of string values).
|
2148
|
-
# Corresponds to the JSON property `info`
|
2149
|
-
# @return [Hash<String,Array<Object>>]
|
2150
|
-
attr_accessor :info
|
2151
|
-
|
2152
1908
|
# The number of values that can be included in a field described by this
|
2153
1909
|
# metadata.
|
2154
1910
|
# Corresponds to the JSON property `number`
|
@@ -2177,19 +1933,31 @@ module Google
|
|
2177
1933
|
# @return [String]
|
2178
1934
|
attr_accessor :description
|
2179
1935
|
|
1936
|
+
# Remaining structured metadata key-value pairs. This must be of the form
|
1937
|
+
# map<string, string[]> (string key mapping to a list of string values).
|
1938
|
+
# Corresponds to the JSON property `info`
|
1939
|
+
# @return [Hash<String,Array<Object>>]
|
1940
|
+
attr_accessor :info
|
1941
|
+
|
1942
|
+
# The type of data. Possible types include: Integer, Float,
|
1943
|
+
# Flag, Character, and String.
|
1944
|
+
# Corresponds to the JSON property `type`
|
1945
|
+
# @return [String]
|
1946
|
+
attr_accessor :type
|
1947
|
+
|
2180
1948
|
def initialize(**args)
|
2181
1949
|
update!(**args)
|
2182
1950
|
end
|
2183
1951
|
|
2184
1952
|
# Update properties of this object
|
2185
1953
|
def update!(**args)
|
2186
|
-
@type = args[:type] if args.key?(:type)
|
2187
|
-
@info = args[:info] if args.key?(:info)
|
2188
1954
|
@number = args[:number] if args.key?(:number)
|
2189
1955
|
@id = args[:id] if args.key?(:id)
|
2190
1956
|
@value = args[:value] if args.key?(:value)
|
2191
1957
|
@key = args[:key] if args.key?(:key)
|
2192
1958
|
@description = args[:description] if args.key?(:description)
|
1959
|
+
@info = args[:info] if args.key?(:info)
|
1960
|
+
@type = args[:type] if args.key?(:type)
|
2193
1961
|
end
|
2194
1962
|
end
|
2195
1963
|
|
@@ -2202,26 +1970,36 @@ module Google
|
|
2202
1970
|
class Reference
|
2203
1971
|
include Google::Apis::Core::Hashable
|
2204
1972
|
|
1973
|
+
# The server-generated reference ID, unique across all references.
|
1974
|
+
# Corresponds to the JSON property `id`
|
1975
|
+
# @return [String]
|
1976
|
+
attr_accessor :id
|
1977
|
+
|
1978
|
+
# The length of this reference's sequence.
|
1979
|
+
# Corresponds to the JSON property `length`
|
1980
|
+
# @return [String]
|
1981
|
+
attr_accessor :length
|
1982
|
+
|
2205
1983
|
# All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
|
2206
1984
|
# with a version number, for example `GCF_000001405.26`.
|
2207
1985
|
# Corresponds to the JSON property `sourceAccessions`
|
2208
1986
|
# @return [Array<String>]
|
2209
1987
|
attr_accessor :source_accessions
|
2210
1988
|
|
2211
|
-
# ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
|
2212
|
-
# Corresponds to the JSON property `ncbiTaxonId`
|
2213
|
-
# @return [Fixnum]
|
2214
|
-
attr_accessor :ncbi_taxon_id
|
2215
|
-
|
2216
1989
|
# The URI from which the sequence was obtained. Typically specifies a FASTA
|
2217
1990
|
# format file.
|
2218
1991
|
# Corresponds to the JSON property `sourceUri`
|
2219
1992
|
# @return [String]
|
2220
1993
|
attr_accessor :source_uri
|
2221
1994
|
|
2222
|
-
#
|
2223
|
-
# Corresponds to the JSON property `
|
2224
|
-
# @return [
|
1995
|
+
# ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
|
1996
|
+
# Corresponds to the JSON property `ncbiTaxonId`
|
1997
|
+
# @return [Fixnum]
|
1998
|
+
attr_accessor :ncbi_taxon_id
|
1999
|
+
|
2000
|
+
# The name of this reference, for example `22`.
|
2001
|
+
# Corresponds to the JSON property `name`
|
2002
|
+
# @return [String]
|
2225
2003
|
attr_accessor :name
|
2226
2004
|
|
2227
2005
|
# MD5 of the upper-case sequence excluding all whitespace characters (this
|
@@ -2231,29 +2009,19 @@ module Google
|
|
2231
2009
|
# @return [String]
|
2232
2010
|
attr_accessor :md5checksum
|
2233
2011
|
|
2234
|
-
# The server-generated reference ID, unique across all references.
|
2235
|
-
# Corresponds to the JSON property `id`
|
2236
|
-
# @return [String]
|
2237
|
-
attr_accessor :id
|
2238
|
-
|
2239
|
-
# The length of this reference's sequence.
|
2240
|
-
# Corresponds to the JSON property `length`
|
2241
|
-
# @return [String]
|
2242
|
-
attr_accessor :length
|
2243
|
-
|
2244
2012
|
def initialize(**args)
|
2245
2013
|
update!(**args)
|
2246
2014
|
end
|
2247
2015
|
|
2248
2016
|
# Update properties of this object
|
2249
2017
|
def update!(**args)
|
2018
|
+
@id = args[:id] if args.key?(:id)
|
2019
|
+
@length = args[:length] if args.key?(:length)
|
2250
2020
|
@source_accessions = args[:source_accessions] if args.key?(:source_accessions)
|
2251
|
-
@ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
|
2252
2021
|
@source_uri = args[:source_uri] if args.key?(:source_uri)
|
2022
|
+
@ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
|
2253
2023
|
@name = args[:name] if args.key?(:name)
|
2254
2024
|
@md5checksum = args[:md5checksum] if args.key?(:md5checksum)
|
2255
|
-
@id = args[:id] if args.key?(:id)
|
2256
|
-
@length = args[:length] if args.key?(:length)
|
2257
2025
|
end
|
2258
2026
|
end
|
2259
2027
|
|
@@ -2261,6 +2029,12 @@ module Google
|
|
2261
2029
|
class SearchReferenceSetsRequest
|
2262
2030
|
include Google::Apis::Core::Hashable
|
2263
2031
|
|
2032
|
+
# If present, return reference sets for which the
|
2033
|
+
# md5checksum matches exactly.
|
2034
|
+
# Corresponds to the JSON property `md5checksums`
|
2035
|
+
# @return [Array<String>]
|
2036
|
+
attr_accessor :md5checksums
|
2037
|
+
|
2264
2038
|
# If present, return reference sets for which a prefix of any of
|
2265
2039
|
# sourceAccessions
|
2266
2040
|
# match any of these strings. Accession numbers typically have a main number
|
@@ -2288,23 +2062,17 @@ module Google
|
|
2288
2062
|
# @return [String]
|
2289
2063
|
attr_accessor :assembly_id
|
2290
2064
|
|
2291
|
-
# If present, return reference sets for which the
|
2292
|
-
# md5checksum matches exactly.
|
2293
|
-
# Corresponds to the JSON property `md5checksums`
|
2294
|
-
# @return [Array<String>]
|
2295
|
-
attr_accessor :md5checksums
|
2296
|
-
|
2297
2065
|
def initialize(**args)
|
2298
2066
|
update!(**args)
|
2299
2067
|
end
|
2300
2068
|
|
2301
2069
|
# Update properties of this object
|
2302
2070
|
def update!(**args)
|
2071
|
+
@md5checksums = args[:md5checksums] if args.key?(:md5checksums)
|
2303
2072
|
@accessions = args[:accessions] if args.key?(:accessions)
|
2304
2073
|
@page_token = args[:page_token] if args.key?(:page_token)
|
2305
2074
|
@page_size = args[:page_size] if args.key?(:page_size)
|
2306
2075
|
@assembly_id = args[:assembly_id] if args.key?(:assembly_id)
|
2307
|
-
@md5checksums = args[:md5checksums] if args.key?(:md5checksums)
|
2308
2076
|
end
|
2309
2077
|
end
|
2310
2078
|
|
@@ -2384,38 +2152,6 @@ module Google
|
|
2384
2152
|
end
|
2385
2153
|
end
|
2386
2154
|
|
2387
|
-
#
|
2388
|
-
class BatchCreateAnnotationsRequest
|
2389
|
-
include Google::Apis::Core::Hashable
|
2390
|
-
|
2391
|
-
# The annotations to be created. At most 4096 can be specified in a single
|
2392
|
-
# request.
|
2393
|
-
# Corresponds to the JSON property `annotations`
|
2394
|
-
# @return [Array<Google::Apis::GenomicsV1::Annotation>]
|
2395
|
-
attr_accessor :annotations
|
2396
|
-
|
2397
|
-
# A unique request ID which enables the server to detect duplicated requests.
|
2398
|
-
# If provided, duplicated requests will result in the same response; if not
|
2399
|
-
# provided, duplicated requests may result in duplicated data. For a given
|
2400
|
-
# annotation set, callers should not reuse `request_id`s when writing
|
2401
|
-
# different batches of annotations - behavior in this case is undefined.
|
2402
|
-
# A common approach is to use a UUID. For batch jobs where worker crashes are
|
2403
|
-
# a possibility, consider using some unique variant of a worker or run ID.
|
2404
|
-
# Corresponds to the JSON property `requestId`
|
2405
|
-
# @return [String]
|
2406
|
-
attr_accessor :request_id
|
2407
|
-
|
2408
|
-
def initialize(**args)
|
2409
|
-
update!(**args)
|
2410
|
-
end
|
2411
|
-
|
2412
|
-
# Update properties of this object
|
2413
|
-
def update!(**args)
|
2414
|
-
@annotations = args[:annotations] if args.key?(:annotations)
|
2415
|
-
@request_id = args[:request_id] if args.key?(:request_id)
|
2416
|
-
end
|
2417
|
-
end
|
2418
|
-
|
2419
2155
|
# A read alignment describes a linear alignment of a string of DNA to a
|
2420
2156
|
# reference sequence, in addition to metadata
|
2421
2157
|
# about the fragment (the molecule of DNA sequenced) and the read (the bases
|
@@ -2491,6 +2227,39 @@ module Google
|
|
2491
2227
|
class Read
|
2492
2228
|
include Google::Apis::Core::Hashable
|
2493
2229
|
|
2230
|
+
# A linear alignment can be represented by one CIGAR string. Describes the
|
2231
|
+
# mapped position and local alignment of the read to the reference.
|
2232
|
+
# Corresponds to the JSON property `alignment`
|
2233
|
+
# @return [Google::Apis::GenomicsV1::LinearAlignment]
|
2234
|
+
attr_accessor :alignment
|
2235
|
+
|
2236
|
+
# The server-generated read ID, unique across all reads. This is different
|
2237
|
+
# from the `fragmentName`.
|
2238
|
+
# Corresponds to the JSON property `id`
|
2239
|
+
# @return [String]
|
2240
|
+
attr_accessor :id
|
2241
|
+
|
2242
|
+
# The number of reads in the fragment (extension to SAM flag 0x1).
|
2243
|
+
# Corresponds to the JSON property `numberReads`
|
2244
|
+
# @return [Fixnum]
|
2245
|
+
attr_accessor :number_reads
|
2246
|
+
|
2247
|
+
# Whether this alignment is secondary. Equivalent to SAM flag 0x100.
|
2248
|
+
# A secondary alignment represents an alternative to the primary alignment
|
2249
|
+
# for this read. Aligners may return secondary alignments if a read can map
|
2250
|
+
# ambiguously to multiple coordinates in the genome. By convention, each read
|
2251
|
+
# has one and only one alignment where both `secondaryAlignment`
|
2252
|
+
# and `supplementaryAlignment` are false.
|
2253
|
+
# Corresponds to the JSON property `secondaryAlignment`
|
2254
|
+
# @return [Boolean]
|
2255
|
+
attr_accessor :secondary_alignment
|
2256
|
+
alias_method :secondary_alignment?, :secondary_alignment
|
2257
|
+
|
2258
|
+
# The fragment name. Equivalent to QNAME (query template name) in SAM.
|
2259
|
+
# Corresponds to the JSON property `fragmentName`
|
2260
|
+
# @return [String]
|
2261
|
+
attr_accessor :fragment_name
|
2262
|
+
|
2494
2263
|
# The ID of the read group set this read belongs to. A read belongs to
|
2495
2264
|
# exactly one read group set.
|
2496
2265
|
# Corresponds to the JSON property `readGroupSetId`
|
@@ -2509,6 +2278,14 @@ module Google
|
|
2509
2278
|
# @return [Fixnum]
|
2510
2279
|
attr_accessor :read_number
|
2511
2280
|
|
2281
|
+
# The ID of the read group this read belongs to. A read belongs to exactly
|
2282
|
+
# one read group. This is a server-generated ID which is distinct from SAM's
|
2283
|
+
# RG tag (for that value, see
|
2284
|
+
# ReadGroup.name).
|
2285
|
+
# Corresponds to the JSON property `readGroupId`
|
2286
|
+
# @return [String]
|
2287
|
+
attr_accessor :read_group_id
|
2288
|
+
|
2512
2289
|
# The bases of the read sequence contained in this alignment record,
|
2513
2290
|
# **without CIGAR operations applied** (equivalent to SEQ in SAM).
|
2514
2291
|
# `alignedSequence` and `alignedQuality` may be
|
@@ -2520,14 +2297,6 @@ module Google
|
|
2520
2297
|
# @return [String]
|
2521
2298
|
attr_accessor :aligned_sequence
|
2522
2299
|
|
2523
|
-
# The ID of the read group this read belongs to. A read belongs to exactly
|
2524
|
-
# one read group. This is a server-generated ID which is distinct from SAM's
|
2525
|
-
# RG tag (for that value, see
|
2526
|
-
# ReadGroup.name).
|
2527
|
-
# Corresponds to the JSON property `readGroupId`
|
2528
|
-
# @return [String]
|
2529
|
-
attr_accessor :read_group_id
|
2530
|
-
|
2531
2300
|
# An abstraction for referring to a genomic position, in relation to some
|
2532
2301
|
# already known reference. For now, represents a genomic position as a
|
2533
2302
|
# reference name, a base number on that reference (0-based), and a
|
@@ -2588,50 +2357,22 @@ module Google
|
|
2588
2357
|
# @return [Array<Fixnum>]
|
2589
2358
|
attr_accessor :aligned_quality
|
2590
2359
|
|
2591
|
-
# A linear alignment can be represented by one CIGAR string. Describes the
|
2592
|
-
# mapped position and local alignment of the read to the reference.
|
2593
|
-
# Corresponds to the JSON property `alignment`
|
2594
|
-
# @return [Google::Apis::GenomicsV1::LinearAlignment]
|
2595
|
-
attr_accessor :alignment
|
2596
|
-
|
2597
|
-
# The number of reads in the fragment (extension to SAM flag 0x1).
|
2598
|
-
# Corresponds to the JSON property `numberReads`
|
2599
|
-
# @return [Fixnum]
|
2600
|
-
attr_accessor :number_reads
|
2601
|
-
|
2602
|
-
# The server-generated read ID, unique across all reads. This is different
|
2603
|
-
# from the `fragmentName`.
|
2604
|
-
# Corresponds to the JSON property `id`
|
2605
|
-
# @return [String]
|
2606
|
-
attr_accessor :id
|
2607
|
-
|
2608
|
-
# Whether this alignment is secondary. Equivalent to SAM flag 0x100.
|
2609
|
-
# A secondary alignment represents an alternative to the primary alignment
|
2610
|
-
# for this read. Aligners may return secondary alignments if a read can map
|
2611
|
-
# ambiguously to multiple coordinates in the genome. By convention, each read
|
2612
|
-
# has one and only one alignment where both `secondaryAlignment`
|
2613
|
-
# and `supplementaryAlignment` are false.
|
2614
|
-
# Corresponds to the JSON property `secondaryAlignment`
|
2615
|
-
# @return [Boolean]
|
2616
|
-
attr_accessor :secondary_alignment
|
2617
|
-
alias_method :secondary_alignment?, :secondary_alignment
|
2618
|
-
|
2619
|
-
# The fragment name. Equivalent to QNAME (query template name) in SAM.
|
2620
|
-
# Corresponds to the JSON property `fragmentName`
|
2621
|
-
# @return [String]
|
2622
|
-
attr_accessor :fragment_name
|
2623
|
-
|
2624
2360
|
def initialize(**args)
|
2625
2361
|
update!(**args)
|
2626
2362
|
end
|
2627
2363
|
|
2628
2364
|
# Update properties of this object
|
2629
2365
|
def update!(**args)
|
2366
|
+
@alignment = args[:alignment] if args.key?(:alignment)
|
2367
|
+
@id = args[:id] if args.key?(:id)
|
2368
|
+
@number_reads = args[:number_reads] if args.key?(:number_reads)
|
2369
|
+
@secondary_alignment = args[:secondary_alignment] if args.key?(:secondary_alignment)
|
2370
|
+
@fragment_name = args[:fragment_name] if args.key?(:fragment_name)
|
2630
2371
|
@read_group_set_id = args[:read_group_set_id] if args.key?(:read_group_set_id)
|
2631
2372
|
@duplicate_fragment = args[:duplicate_fragment] if args.key?(:duplicate_fragment)
|
2632
2373
|
@read_number = args[:read_number] if args.key?(:read_number)
|
2633
|
-
@aligned_sequence = args[:aligned_sequence] if args.key?(:aligned_sequence)
|
2634
2374
|
@read_group_id = args[:read_group_id] if args.key?(:read_group_id)
|
2375
|
+
@aligned_sequence = args[:aligned_sequence] if args.key?(:aligned_sequence)
|
2635
2376
|
@next_mate_position = args[:next_mate_position] if args.key?(:next_mate_position)
|
2636
2377
|
@info = args[:info] if args.key?(:info)
|
2637
2378
|
@proper_placement = args[:proper_placement] if args.key?(:proper_placement)
|
@@ -2639,73 +2380,29 @@ module Google
|
|
2639
2380
|
@fragment_length = args[:fragment_length] if args.key?(:fragment_length)
|
2640
2381
|
@failed_vendor_quality_checks = args[:failed_vendor_quality_checks] if args.key?(:failed_vendor_quality_checks)
|
2641
2382
|
@aligned_quality = args[:aligned_quality] if args.key?(:aligned_quality)
|
2642
|
-
@alignment = args[:alignment] if args.key?(:alignment)
|
2643
|
-
@number_reads = args[:number_reads] if args.key?(:number_reads)
|
2644
|
-
@id = args[:id] if args.key?(:id)
|
2645
|
-
@secondary_alignment = args[:secondary_alignment] if args.key?(:secondary_alignment)
|
2646
|
-
@fragment_name = args[:fragment_name] if args.key?(:fragment_name)
|
2647
2383
|
end
|
2648
2384
|
end
|
2649
2385
|
|
2650
|
-
#
|
2651
|
-
|
2652
|
-
# of the human genome. A reference set defines a common coordinate space for
|
2653
|
-
# comparing reference-aligned experimental data. A reference set contains 1 or
|
2654
|
-
# more references.
|
2655
|
-
# For more genomics resource definitions, see [Fundamentals of Google
|
2656
|
-
# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
2657
|
-
class ReferenceSet
|
2386
|
+
#
|
2387
|
+
class BatchCreateAnnotationsRequest
|
2658
2388
|
include Google::Apis::Core::Hashable
|
2659
2389
|
|
2660
|
-
#
|
2661
|
-
#
|
2662
|
-
#
|
2663
|
-
#
|
2664
|
-
|
2665
|
-
|
2666
|
-
#
|
2667
|
-
#
|
2668
|
-
# `reference.md5checksum` (for all reference in this set) in
|
2669
|
-
# ascending lexicographic order, concatenating, and taking the MD5 of that
|
2670
|
-
# value. The resulting value is represented in lower case hexadecimal format.
|
2671
|
-
# Corresponds to the JSON property `md5checksum`
|
2672
|
-
# @return [String]
|
2673
|
-
attr_accessor :md5checksum
|
2674
|
-
|
2675
|
-
# Public id of this reference set, such as `GRCh37`.
|
2676
|
-
# Corresponds to the JSON property `assemblyId`
|
2677
|
-
# @return [String]
|
2678
|
-
attr_accessor :assembly_id
|
2679
|
-
|
2680
|
-
# The server-generated reference set ID, unique across all reference sets.
|
2681
|
-
# Corresponds to the JSON property `id`
|
2682
|
-
# @return [String]
|
2683
|
-
attr_accessor :id
|
2684
|
-
|
2685
|
-
# Free text description of this reference set.
|
2686
|
-
# Corresponds to the JSON property `description`
|
2687
|
-
# @return [String]
|
2688
|
-
attr_accessor :description
|
2689
|
-
|
2690
|
-
# All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
|
2691
|
-
# with a version number, for example `NC_000001.11`.
|
2692
|
-
# Corresponds to the JSON property `sourceAccessions`
|
2693
|
-
# @return [Array<String>]
|
2694
|
-
attr_accessor :source_accessions
|
2695
|
-
|
2696
|
-
# The URI from which the references were obtained.
|
2697
|
-
# Corresponds to the JSON property `sourceUri`
|
2390
|
+
# A unique request ID which enables the server to detect duplicated requests.
|
2391
|
+
# If provided, duplicated requests will result in the same response; if not
|
2392
|
+
# provided, duplicated requests may result in duplicated data. For a given
|
2393
|
+
# annotation set, callers should not reuse `request_id`s when writing
|
2394
|
+
# different batches of annotations - behavior in this case is undefined.
|
2395
|
+
# A common approach is to use a UUID. For batch jobs where worker crashes are
|
2396
|
+
# a possibility, consider using some unique variant of a worker or run ID.
|
2397
|
+
# Corresponds to the JSON property `requestId`
|
2698
2398
|
# @return [String]
|
2699
|
-
attr_accessor :
|
2399
|
+
attr_accessor :request_id
|
2700
2400
|
|
2701
|
-
#
|
2702
|
-
#
|
2703
|
-
#
|
2704
|
-
#
|
2705
|
-
|
2706
|
-
# Corresponds to the JSON property `ncbiTaxonId`
|
2707
|
-
# @return [Fixnum]
|
2708
|
-
attr_accessor :ncbi_taxon_id
|
2401
|
+
# The annotations to be created. At most 4096 can be specified in a single
|
2402
|
+
# request.
|
2403
|
+
# Corresponds to the JSON property `annotations`
|
2404
|
+
# @return [Array<Google::Apis::GenomicsV1::Annotation>]
|
2405
|
+
attr_accessor :annotations
|
2709
2406
|
|
2710
2407
|
def initialize(**args)
|
2711
2408
|
update!(**args)
|
@@ -2713,14 +2410,8 @@ module Google
|
|
2713
2410
|
|
2714
2411
|
# Update properties of this object
|
2715
2412
|
def update!(**args)
|
2716
|
-
@
|
2717
|
-
@
|
2718
|
-
@assembly_id = args[:assembly_id] if args.key?(:assembly_id)
|
2719
|
-
@id = args[:id] if args.key?(:id)
|
2720
|
-
@description = args[:description] if args.key?(:description)
|
2721
|
-
@source_accessions = args[:source_accessions] if args.key?(:source_accessions)
|
2722
|
-
@source_uri = args[:source_uri] if args.key?(:source_uri)
|
2723
|
-
@ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
|
2413
|
+
@request_id = args[:request_id] if args.key?(:request_id)
|
2414
|
+
@annotations = args[:annotations] if args.key?(:annotations)
|
2724
2415
|
end
|
2725
2416
|
end
|
2726
2417
|
|
@@ -2758,49 +2449,65 @@ module Google
|
|
2758
2449
|
end
|
2759
2450
|
end
|
2760
2451
|
|
2761
|
-
#
|
2762
|
-
#
|
2763
|
-
#
|
2764
|
-
|
2765
|
-
|
2766
|
-
|
2767
|
-
|
2768
|
-
|
2769
|
-
|
2770
|
-
attr_accessor :id
|
2771
|
-
|
2772
|
-
# The dataset to which this annotation set belongs.
|
2773
|
-
# Corresponds to the JSON property `datasetId`
|
2774
|
-
# @return [String]
|
2775
|
-
attr_accessor :dataset_id
|
2452
|
+
# A reference set is a set of references which typically comprise a reference
|
2453
|
+
# assembly for a species, such as `GRCh38` which is representative
|
2454
|
+
# of the human genome. A reference set defines a common coordinate space for
|
2455
|
+
# comparing reference-aligned experimental data. A reference set contains 1 or
|
2456
|
+
# more references.
|
2457
|
+
# For more genomics resource definitions, see [Fundamentals of Google
|
2458
|
+
# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
2459
|
+
class ReferenceSet
|
2460
|
+
include Google::Apis::Core::Hashable
|
2776
2461
|
|
2777
|
-
#
|
2778
|
-
#
|
2462
|
+
# ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
|
2463
|
+
# indicating the species which this reference set is intended to model. Note
|
2464
|
+
# that contained references may specify a different `ncbiTaxonId`, as
|
2465
|
+
# assemblies may contain reference sequences which do not belong to the
|
2466
|
+
# modeled species, for example EBV in a human reference genome.
|
2467
|
+
# Corresponds to the JSON property `ncbiTaxonId`
|
2468
|
+
# @return [Fixnum]
|
2469
|
+
attr_accessor :ncbi_taxon_id
|
2470
|
+
|
2471
|
+
# The URI from which the references were obtained.
|
2779
2472
|
# Corresponds to the JSON property `sourceUri`
|
2780
2473
|
# @return [String]
|
2781
2474
|
attr_accessor :source_uri
|
2782
2475
|
|
2783
|
-
# The
|
2784
|
-
#
|
2476
|
+
# The IDs of the reference objects that are part of this set.
|
2477
|
+
# `Reference.md5checksum` must be unique within this set.
|
2478
|
+
# Corresponds to the JSON property `referenceIds`
|
2479
|
+
# @return [Array<String>]
|
2480
|
+
attr_accessor :reference_ids
|
2481
|
+
|
2482
|
+
# Order-independent MD5 checksum which identifies this reference set. The
|
2483
|
+
# checksum is computed by sorting all lower case hexidecimal string
|
2484
|
+
# `reference.md5checksum` (for all reference in this set) in
|
2485
|
+
# ascending lexicographic order, concatenating, and taking the MD5 of that
|
2486
|
+
# value. The resulting value is represented in lower case hexadecimal format.
|
2487
|
+
# Corresponds to the JSON property `md5checksum`
|
2785
2488
|
# @return [String]
|
2786
|
-
attr_accessor :
|
2489
|
+
attr_accessor :md5checksum
|
2787
2490
|
|
2788
|
-
#
|
2789
|
-
#
|
2790
|
-
# Corresponds to the JSON property `referenceSetId`
|
2491
|
+
# Public id of this reference set, such as `GRCh37`.
|
2492
|
+
# Corresponds to the JSON property `assemblyId`
|
2791
2493
|
# @return [String]
|
2792
|
-
attr_accessor :
|
2494
|
+
attr_accessor :assembly_id
|
2793
2495
|
|
2794
|
-
#
|
2795
|
-
#
|
2796
|
-
#
|
2797
|
-
|
2798
|
-
attr_accessor :info
|
2496
|
+
# The server-generated reference set ID, unique across all reference sets.
|
2497
|
+
# Corresponds to the JSON property `id`
|
2498
|
+
# @return [String]
|
2499
|
+
attr_accessor :id
|
2799
2500
|
|
2800
|
-
#
|
2801
|
-
#
|
2501
|
+
# All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
|
2502
|
+
# with a version number, for example `NC_000001.11`.
|
2503
|
+
# Corresponds to the JSON property `sourceAccessions`
|
2504
|
+
# @return [Array<String>]
|
2505
|
+
attr_accessor :source_accessions
|
2506
|
+
|
2507
|
+
# Free text description of this reference set.
|
2508
|
+
# Corresponds to the JSON property `description`
|
2802
2509
|
# @return [String]
|
2803
|
-
attr_accessor :
|
2510
|
+
attr_accessor :description
|
2804
2511
|
|
2805
2512
|
def initialize(**args)
|
2806
2513
|
update!(**args)
|
@@ -2808,13 +2515,14 @@ module Google
|
|
2808
2515
|
|
2809
2516
|
# Update properties of this object
|
2810
2517
|
def update!(**args)
|
2811
|
-
@
|
2812
|
-
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
2518
|
+
@ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
|
2813
2519
|
@source_uri = args[:source_uri] if args.key?(:source_uri)
|
2814
|
-
@
|
2815
|
-
@
|
2816
|
-
@
|
2817
|
-
@
|
2520
|
+
@reference_ids = args[:reference_ids] if args.key?(:reference_ids)
|
2521
|
+
@md5checksum = args[:md5checksum] if args.key?(:md5checksum)
|
2522
|
+
@assembly_id = args[:assembly_id] if args.key?(:assembly_id)
|
2523
|
+
@id = args[:id] if args.key?(:id)
|
2524
|
+
@source_accessions = args[:source_accessions] if args.key?(:source_accessions)
|
2525
|
+
@description = args[:description] if args.key?(:description)
|
2818
2526
|
end
|
2819
2527
|
end
|
2820
2528
|
|
@@ -2823,6 +2531,22 @@ module Google
|
|
2823
2531
|
class Transcript
|
2824
2532
|
include Google::Apis::Core::Hashable
|
2825
2533
|
|
2534
|
+
# The range of the coding sequence for this transcript, if any. To determine
|
2535
|
+
# the exact ranges of coding sequence, intersect this range with those of the
|
2536
|
+
# exons, if any. If there are any
|
2537
|
+
# exons, the
|
2538
|
+
# codingSequence must start
|
2539
|
+
# and end within them.
|
2540
|
+
# Note that in some cases, the reference genome will not exactly match the
|
2541
|
+
# observed mRNA transcript e.g. due to variance in the source genome from
|
2542
|
+
# reference. In these cases,
|
2543
|
+
# exon.frame will not necessarily
|
2544
|
+
# match the expected reference reading frame and coding exon reference bases
|
2545
|
+
# cannot necessarily be concatenated to produce the original transcript mRNA.
|
2546
|
+
# Corresponds to the JSON property `codingSequence`
|
2547
|
+
# @return [Google::Apis::GenomicsV1::CodingSequence]
|
2548
|
+
attr_accessor :coding_sequence
|
2549
|
+
|
2826
2550
|
# The annotation ID of the gene from which this transcript is transcribed.
|
2827
2551
|
# Corresponds to the JSON property `geneId`
|
2828
2552
|
# @return [String]
|
@@ -2843,49 +2567,81 @@ module Google
|
|
2843
2567
|
# @return [Array<Google::Apis::GenomicsV1::Exon>]
|
2844
2568
|
attr_accessor :exons
|
2845
2569
|
|
2846
|
-
# The range of the coding sequence for this transcript, if any. To determine
|
2847
|
-
# the exact ranges of coding sequence, intersect this range with those of the
|
2848
|
-
# exons, if any. If there are any
|
2849
|
-
# exons, the
|
2850
|
-
# codingSequence must start
|
2851
|
-
# and end within them.
|
2852
|
-
# Note that in some cases, the reference genome will not exactly match the
|
2853
|
-
# observed mRNA transcript e.g. due to variance in the source genome from
|
2854
|
-
# reference. In these cases,
|
2855
|
-
# exon.frame will not necessarily
|
2856
|
-
# match the expected reference reading frame and coding exon reference bases
|
2857
|
-
# cannot necessarily be concatenated to produce the original transcript mRNA.
|
2858
|
-
# Corresponds to the JSON property `codingSequence`
|
2859
|
-
# @return [Google::Apis::GenomicsV1::CodingSequence]
|
2860
|
-
attr_accessor :coding_sequence
|
2861
|
-
|
2862
2570
|
def initialize(**args)
|
2863
2571
|
update!(**args)
|
2864
2572
|
end
|
2865
2573
|
|
2866
2574
|
# Update properties of this object
|
2867
2575
|
def update!(**args)
|
2576
|
+
@coding_sequence = args[:coding_sequence] if args.key?(:coding_sequence)
|
2868
2577
|
@gene_id = args[:gene_id] if args.key?(:gene_id)
|
2869
2578
|
@exons = args[:exons] if args.key?(:exons)
|
2870
|
-
@coding_sequence = args[:coding_sequence] if args.key?(:coding_sequence)
|
2871
2579
|
end
|
2872
2580
|
end
|
2873
2581
|
|
2874
|
-
#
|
2875
|
-
|
2582
|
+
# An annotation set is a logical grouping of annotations that share consistent
|
2583
|
+
# type information and provenance. Examples of annotation sets include 'all
|
2584
|
+
# genes from refseq', and 'all variant annotations from ClinVar'.
|
2585
|
+
class AnnotationSet
|
2876
2586
|
include Google::Apis::Core::Hashable
|
2877
2587
|
|
2878
|
-
# The
|
2879
|
-
#
|
2588
|
+
# The source URI describing the file from which this annotation set was
|
2589
|
+
# generated, if any.
|
2590
|
+
# Corresponds to the JSON property `sourceUri`
|
2880
2591
|
# @return [String]
|
2881
|
-
attr_accessor :
|
2592
|
+
attr_accessor :source_uri
|
2882
2593
|
|
2883
|
-
# The
|
2884
|
-
#
|
2885
|
-
# @RG PU field in the SAM spec.
|
2886
|
-
# Corresponds to the JSON property `platformUnit`
|
2594
|
+
# The dataset to which this annotation set belongs.
|
2595
|
+
# Corresponds to the JSON property `datasetId`
|
2887
2596
|
# @return [String]
|
2888
|
-
attr_accessor :
|
2597
|
+
attr_accessor :dataset_id
|
2598
|
+
|
2599
|
+
# The display name for this annotation set.
|
2600
|
+
# Corresponds to the JSON property `name`
|
2601
|
+
# @return [String]
|
2602
|
+
attr_accessor :name
|
2603
|
+
|
2604
|
+
# The ID of the reference set that defines the coordinate space for this
|
2605
|
+
# set's annotations.
|
2606
|
+
# Corresponds to the JSON property `referenceSetId`
|
2607
|
+
# @return [String]
|
2608
|
+
attr_accessor :reference_set_id
|
2609
|
+
|
2610
|
+
# A map of additional read alignment information. This must be of the form
|
2611
|
+
# map<string, string[]> (string key mapping to a list of string values).
|
2612
|
+
# Corresponds to the JSON property `info`
|
2613
|
+
# @return [Hash<String,Array<Object>>]
|
2614
|
+
attr_accessor :info
|
2615
|
+
|
2616
|
+
# The type of annotations contained within this set.
|
2617
|
+
# Corresponds to the JSON property `type`
|
2618
|
+
# @return [String]
|
2619
|
+
attr_accessor :type
|
2620
|
+
|
2621
|
+
# The server-generated annotation set ID, unique across all annotation sets.
|
2622
|
+
# Corresponds to the JSON property `id`
|
2623
|
+
# @return [String]
|
2624
|
+
attr_accessor :id
|
2625
|
+
|
2626
|
+
def initialize(**args)
|
2627
|
+
update!(**args)
|
2628
|
+
end
|
2629
|
+
|
2630
|
+
# Update properties of this object
|
2631
|
+
def update!(**args)
|
2632
|
+
@source_uri = args[:source_uri] if args.key?(:source_uri)
|
2633
|
+
@dataset_id = args[:dataset_id] if args.key?(:dataset_id)
|
2634
|
+
@name = args[:name] if args.key?(:name)
|
2635
|
+
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
2636
|
+
@info = args[:info] if args.key?(:info)
|
2637
|
+
@type = args[:type] if args.key?(:type)
|
2638
|
+
@id = args[:id] if args.key?(:id)
|
2639
|
+
end
|
2640
|
+
end
|
2641
|
+
|
2642
|
+
#
|
2643
|
+
class Experiment
|
2644
|
+
include Google::Apis::Core::Hashable
|
2889
2645
|
|
2890
2646
|
# A client-supplied library identifier; a library is a collection of DNA
|
2891
2647
|
# fragments which have been prepared for sequencing from a sample. This
|
@@ -2901,16 +2657,28 @@ module Google
|
|
2901
2657
|
# @return [String]
|
2902
2658
|
attr_accessor :instrument_model
|
2903
2659
|
|
2660
|
+
# The sequencing center used as part of this experiment.
|
2661
|
+
# Corresponds to the JSON property `sequencingCenter`
|
2662
|
+
# @return [String]
|
2663
|
+
attr_accessor :sequencing_center
|
2664
|
+
|
2665
|
+
# The platform unit used as part of this experiment, for example
|
2666
|
+
# flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
|
2667
|
+
# @RG PU field in the SAM spec.
|
2668
|
+
# Corresponds to the JSON property `platformUnit`
|
2669
|
+
# @return [String]
|
2670
|
+
attr_accessor :platform_unit
|
2671
|
+
|
2904
2672
|
def initialize(**args)
|
2905
2673
|
update!(**args)
|
2906
2674
|
end
|
2907
2675
|
|
2908
2676
|
# Update properties of this object
|
2909
2677
|
def update!(**args)
|
2910
|
-
@sequencing_center = args[:sequencing_center] if args.key?(:sequencing_center)
|
2911
|
-
@platform_unit = args[:platform_unit] if args.key?(:platform_unit)
|
2912
2678
|
@library_id = args[:library_id] if args.key?(:library_id)
|
2913
2679
|
@instrument_model = args[:instrument_model] if args.key?(:instrument_model)
|
2680
|
+
@sequencing_center = args[:sequencing_center] if args.key?(:sequencing_center)
|
2681
|
+
@platform_unit = args[:platform_unit] if args.key?(:platform_unit)
|
2914
2682
|
end
|
2915
2683
|
end
|
2916
2684
|
|
@@ -3058,6 +2826,16 @@ module Google
|
|
3058
2826
|
class CallSet
|
3059
2827
|
include Google::Apis::Core::Hashable
|
3060
2828
|
|
2829
|
+
# The date this call set was created in milliseconds from the epoch.
|
2830
|
+
# Corresponds to the JSON property `created`
|
2831
|
+
# @return [String]
|
2832
|
+
attr_accessor :created
|
2833
|
+
|
2834
|
+
# The sample ID this call set corresponds to.
|
2835
|
+
# Corresponds to the JSON property `sampleId`
|
2836
|
+
# @return [String]
|
2837
|
+
attr_accessor :sample_id
|
2838
|
+
|
3061
2839
|
# The call set name.
|
3062
2840
|
# Corresponds to the JSON property `name`
|
3063
2841
|
# @return [String]
|
@@ -3084,28 +2862,18 @@ module Google
|
|
3084
2862
|
# @return [String]
|
3085
2863
|
attr_accessor :id
|
3086
2864
|
|
3087
|
-
# The date this call set was created in milliseconds from the epoch.
|
3088
|
-
# Corresponds to the JSON property `created`
|
3089
|
-
# @return [String]
|
3090
|
-
attr_accessor :created
|
3091
|
-
|
3092
|
-
# The sample ID this call set corresponds to.
|
3093
|
-
# Corresponds to the JSON property `sampleId`
|
3094
|
-
# @return [String]
|
3095
|
-
attr_accessor :sample_id
|
3096
|
-
|
3097
2865
|
def initialize(**args)
|
3098
2866
|
update!(**args)
|
3099
2867
|
end
|
3100
2868
|
|
3101
2869
|
# Update properties of this object
|
3102
2870
|
def update!(**args)
|
2871
|
+
@created = args[:created] if args.key?(:created)
|
2872
|
+
@sample_id = args[:sample_id] if args.key?(:sample_id)
|
3103
2873
|
@name = args[:name] if args.key?(:name)
|
3104
2874
|
@info = args[:info] if args.key?(:info)
|
3105
2875
|
@variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
|
3106
2876
|
@id = args[:id] if args.key?(:id)
|
3107
|
-
@created = args[:created] if args.key?(:created)
|
3108
|
-
@sample_id = args[:sample_id] if args.key?(:sample_id)
|
3109
2877
|
end
|
3110
2878
|
end
|
3111
2879
|
|
@@ -3113,11 +2881,6 @@ module Google
|
|
3113
2881
|
class SearchAnnotationSetsResponse
|
3114
2882
|
include Google::Apis::Core::Hashable
|
3115
2883
|
|
3116
|
-
# The matching annotation sets.
|
3117
|
-
# Corresponds to the JSON property `annotationSets`
|
3118
|
-
# @return [Array<Google::Apis::GenomicsV1::AnnotationSet>]
|
3119
|
-
attr_accessor :annotation_sets
|
3120
|
-
|
3121
2884
|
# The continuation token, which is used to page through large result sets.
|
3122
2885
|
# Provide this value in a subsequent request to return the next page of
|
3123
2886
|
# results. This field will be empty if there aren't any additional results.
|
@@ -3125,14 +2888,19 @@ module Google
|
|
3125
2888
|
# @return [String]
|
3126
2889
|
attr_accessor :next_page_token
|
3127
2890
|
|
2891
|
+
# The matching annotation sets.
|
2892
|
+
# Corresponds to the JSON property `annotationSets`
|
2893
|
+
# @return [Array<Google::Apis::GenomicsV1::AnnotationSet>]
|
2894
|
+
attr_accessor :annotation_sets
|
2895
|
+
|
3128
2896
|
def initialize(**args)
|
3129
2897
|
update!(**args)
|
3130
2898
|
end
|
3131
2899
|
|
3132
2900
|
# Update properties of this object
|
3133
2901
|
def update!(**args)
|
3134
|
-
@annotation_sets = args[:annotation_sets] if args.key?(:annotation_sets)
|
3135
2902
|
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
2903
|
+
@annotation_sets = args[:annotation_sets] if args.key?(:annotation_sets)
|
3136
2904
|
end
|
3137
2905
|
end
|
3138
2906
|
|
@@ -3140,6 +2908,19 @@ module Google
|
|
3140
2908
|
class ImportVariantsRequest
|
3141
2909
|
include Google::Apis::Core::Hashable
|
3142
2910
|
|
2911
|
+
# Convert reference names to the canonical representation.
|
2912
|
+
# hg19 haploytypes (those reference names containing "_hap")
|
2913
|
+
# are not modified in any way.
|
2914
|
+
# All other reference names are modified according to the following rules:
|
2915
|
+
# The reference name is capitalized.
|
2916
|
+
# The "chr" prefix is dropped for all autosomes and sex chromsomes.
|
2917
|
+
# For example "chr17" becomes "17" and "chrX" becomes "X".
|
2918
|
+
# All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
|
2919
|
+
# Corresponds to the JSON property `normalizeReferenceNames`
|
2920
|
+
# @return [Boolean]
|
2921
|
+
attr_accessor :normalize_reference_names
|
2922
|
+
alias_method :normalize_reference_names?, :normalize_reference_names
|
2923
|
+
|
3143
2924
|
# The format of the variant data being imported. If unspecified, defaults to
|
3144
2925
|
# to `VCF`.
|
3145
2926
|
# Corresponds to the JSON property `format`
|
@@ -3166,30 +2947,56 @@ module Google
|
|
3166
2947
|
# @return [Array<String>]
|
3167
2948
|
attr_accessor :source_uris
|
3168
2949
|
|
3169
|
-
# Convert reference names to the canonical representation.
|
3170
|
-
# hg19 haploytypes (those reference names containing "_hap")
|
3171
|
-
# are not modified in any way.
|
3172
|
-
# All other reference names are modified according to the following rules:
|
3173
|
-
# The reference name is capitalized.
|
3174
|
-
# The "chr" prefix is dropped for all autosomes and sex chromsomes.
|
3175
|
-
# For example "chr17" becomes "17" and "chrX" becomes "X".
|
3176
|
-
# All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
|
3177
|
-
# Corresponds to the JSON property `normalizeReferenceNames`
|
3178
|
-
# @return [Boolean]
|
3179
|
-
attr_accessor :normalize_reference_names
|
3180
|
-
alias_method :normalize_reference_names?, :normalize_reference_names
|
3181
|
-
|
3182
2950
|
def initialize(**args)
|
3183
2951
|
update!(**args)
|
3184
2952
|
end
|
3185
2953
|
|
3186
2954
|
# Update properties of this object
|
3187
2955
|
def update!(**args)
|
2956
|
+
@normalize_reference_names = args[:normalize_reference_names] if args.key?(:normalize_reference_names)
|
3188
2957
|
@format = args[:format] if args.key?(:format)
|
3189
2958
|
@info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
|
3190
2959
|
@variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
|
3191
2960
|
@source_uris = args[:source_uris] if args.key?(:source_uris)
|
3192
|
-
|
2961
|
+
end
|
2962
|
+
end
|
2963
|
+
|
2964
|
+
#
|
2965
|
+
class ListCoverageBucketsResponse
|
2966
|
+
include Google::Apis::Core::Hashable
|
2967
|
+
|
2968
|
+
# The continuation token, which is used to page through large result sets.
|
2969
|
+
# Provide this value in a subsequent request to return the next page of
|
2970
|
+
# results. This field will be empty if there aren't any additional results.
|
2971
|
+
# Corresponds to the JSON property `nextPageToken`
|
2972
|
+
# @return [String]
|
2973
|
+
attr_accessor :next_page_token
|
2974
|
+
|
2975
|
+
# The length of each coverage bucket in base pairs. Note that buckets at the
|
2976
|
+
# end of a reference sequence may be shorter. This value is omitted if the
|
2977
|
+
# bucket width is infinity (the default behaviour, with no range or
|
2978
|
+
# `targetBucketWidth`).
|
2979
|
+
# Corresponds to the JSON property `bucketWidth`
|
2980
|
+
# @return [String]
|
2981
|
+
attr_accessor :bucket_width
|
2982
|
+
|
2983
|
+
# The coverage buckets. The list of buckets is sparse; a bucket with 0
|
2984
|
+
# overlapping reads is not returned. A bucket never crosses more than one
|
2985
|
+
# reference sequence. Each bucket has width `bucketWidth`, unless
|
2986
|
+
# its end is the end of the reference sequence.
|
2987
|
+
# Corresponds to the JSON property `coverageBuckets`
|
2988
|
+
# @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
|
2989
|
+
attr_accessor :coverage_buckets
|
2990
|
+
|
2991
|
+
def initialize(**args)
|
2992
|
+
update!(**args)
|
2993
|
+
end
|
2994
|
+
|
2995
|
+
# Update properties of this object
|
2996
|
+
def update!(**args)
|
2997
|
+
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
2998
|
+
@bucket_width = args[:bucket_width] if args.key?(:bucket_width)
|
2999
|
+
@coverage_buckets = args[:coverage_buckets] if args.key?(:coverage_buckets)
|
3193
3000
|
end
|
3194
3001
|
end
|
3195
3002
|
|
@@ -3256,45 +3063,6 @@ module Google
|
|
3256
3063
|
end
|
3257
3064
|
end
|
3258
3065
|
|
3259
|
-
#
|
3260
|
-
class ListCoverageBucketsResponse
|
3261
|
-
include Google::Apis::Core::Hashable
|
3262
|
-
|
3263
|
-
# The continuation token, which is used to page through large result sets.
|
3264
|
-
# Provide this value in a subsequent request to return the next page of
|
3265
|
-
# results. This field will be empty if there aren't any additional results.
|
3266
|
-
# Corresponds to the JSON property `nextPageToken`
|
3267
|
-
# @return [String]
|
3268
|
-
attr_accessor :next_page_token
|
3269
|
-
|
3270
|
-
# The length of each coverage bucket in base pairs. Note that buckets at the
|
3271
|
-
# end of a reference sequence may be shorter. This value is omitted if the
|
3272
|
-
# bucket width is infinity (the default behaviour, with no range or
|
3273
|
-
# `targetBucketWidth`).
|
3274
|
-
# Corresponds to the JSON property `bucketWidth`
|
3275
|
-
# @return [String]
|
3276
|
-
attr_accessor :bucket_width
|
3277
|
-
|
3278
|
-
# The coverage buckets. The list of buckets is sparse; a bucket with 0
|
3279
|
-
# overlapping reads is not returned. A bucket never crosses more than one
|
3280
|
-
# reference sequence. Each bucket has width `bucketWidth`, unless
|
3281
|
-
# its end is the end of the reference sequence.
|
3282
|
-
# Corresponds to the JSON property `coverageBuckets`
|
3283
|
-
# @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
|
3284
|
-
attr_accessor :coverage_buckets
|
3285
|
-
|
3286
|
-
def initialize(**args)
|
3287
|
-
update!(**args)
|
3288
|
-
end
|
3289
|
-
|
3290
|
-
# Update properties of this object
|
3291
|
-
def update!(**args)
|
3292
|
-
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
3293
|
-
@bucket_width = args[:bucket_width] if args.key?(:bucket_width)
|
3294
|
-
@coverage_buckets = args[:coverage_buckets] if args.key?(:coverage_buckets)
|
3295
|
-
end
|
3296
|
-
end
|
3297
|
-
|
3298
3066
|
# The variant data export request.
|
3299
3067
|
class ExportVariantSetRequest
|
3300
3068
|
include Google::Apis::Core::Hashable
|
@@ -3348,6 +3116,28 @@ module Google
|
|
3348
3116
|
class SearchAnnotationsRequest
|
3349
3117
|
include Google::Apis::Core::Hashable
|
3350
3118
|
|
3119
|
+
# The start position of the range on the reference, 0-based inclusive. If
|
3120
|
+
# specified,
|
3121
|
+
# referenceId or
|
3122
|
+
# referenceName
|
3123
|
+
# must be specified. Defaults to 0.
|
3124
|
+
# Corresponds to the JSON property `start`
|
3125
|
+
# @return [String]
|
3126
|
+
attr_accessor :start
|
3127
|
+
|
3128
|
+
# Required. The annotation sets to search within. The caller must have
|
3129
|
+
# `READ` access to these annotation sets.
|
3130
|
+
# All queried annotation sets must have the same type.
|
3131
|
+
# Corresponds to the JSON property `annotationSetIds`
|
3132
|
+
# @return [Array<String>]
|
3133
|
+
attr_accessor :annotation_set_ids
|
3134
|
+
|
3135
|
+
# The name of the reference to query, within the reference set associated
|
3136
|
+
# with this query.
|
3137
|
+
# Corresponds to the JSON property `referenceName`
|
3138
|
+
# @return [String]
|
3139
|
+
attr_accessor :reference_name
|
3140
|
+
|
3351
3141
|
# The ID of the reference to query.
|
3352
3142
|
# Corresponds to the JSON property `referenceId`
|
3353
3143
|
# @return [String]
|
@@ -3374,41 +3164,19 @@ module Google
|
|
3374
3164
|
# @return [Fixnum]
|
3375
3165
|
attr_accessor :page_size
|
3376
3166
|
|
3377
|
-
# The start position of the range on the reference, 0-based inclusive. If
|
3378
|
-
# specified,
|
3379
|
-
# referenceId or
|
3380
|
-
# referenceName
|
3381
|
-
# must be specified. Defaults to 0.
|
3382
|
-
# Corresponds to the JSON property `start`
|
3383
|
-
# @return [String]
|
3384
|
-
attr_accessor :start
|
3385
|
-
|
3386
|
-
# Required. The annotation sets to search within. The caller must have
|
3387
|
-
# `READ` access to these annotation sets.
|
3388
|
-
# All queried annotation sets must have the same type.
|
3389
|
-
# Corresponds to the JSON property `annotationSetIds`
|
3390
|
-
# @return [Array<String>]
|
3391
|
-
attr_accessor :annotation_set_ids
|
3392
|
-
|
3393
|
-
# The name of the reference to query, within the reference set associated
|
3394
|
-
# with this query.
|
3395
|
-
# Corresponds to the JSON property `referenceName`
|
3396
|
-
# @return [String]
|
3397
|
-
attr_accessor :reference_name
|
3398
|
-
|
3399
3167
|
def initialize(**args)
|
3400
3168
|
update!(**args)
|
3401
3169
|
end
|
3402
3170
|
|
3403
3171
|
# Update properties of this object
|
3404
3172
|
def update!(**args)
|
3173
|
+
@start = args[:start] if args.key?(:start)
|
3174
|
+
@annotation_set_ids = args[:annotation_set_ids] if args.key?(:annotation_set_ids)
|
3175
|
+
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
3405
3176
|
@reference_id = args[:reference_id] if args.key?(:reference_id)
|
3406
3177
|
@end = args[:end] if args.key?(:end)
|
3407
3178
|
@page_token = args[:page_token] if args.key?(:page_token)
|
3408
3179
|
@page_size = args[:page_size] if args.key?(:page_size)
|
3409
|
-
@start = args[:start] if args.key?(:start)
|
3410
|
-
@annotation_set_ids = args[:annotation_set_ids] if args.key?(:annotation_set_ids)
|
3411
|
-
@reference_name = args[:reference_name] if args.key?(:reference_name)
|
3412
3180
|
end
|
3413
3181
|
end
|
3414
3182
|
|
@@ -3416,6 +3184,12 @@ module Google
|
|
3416
3184
|
class OperationEvent
|
3417
3185
|
include Google::Apis::Core::Hashable
|
3418
3186
|
|
3187
|
+
# Optional time of when event finished. An event can have a start time and no
|
3188
|
+
# finish time. If an event has a finish time, there must be a start time.
|
3189
|
+
# Corresponds to the JSON property `endTime`
|
3190
|
+
# @return [String]
|
3191
|
+
attr_accessor :end_time
|
3192
|
+
|
3419
3193
|
# Optional time of when event started.
|
3420
3194
|
# Corresponds to the JSON property `startTime`
|
3421
3195
|
# @return [String]
|
@@ -3426,21 +3200,15 @@ module Google
|
|
3426
3200
|
# @return [String]
|
3427
3201
|
attr_accessor :description
|
3428
3202
|
|
3429
|
-
# Optional time of when event finished. An event can have a start time and no
|
3430
|
-
# finish time. If an event has a finish time, there must be a start time.
|
3431
|
-
# Corresponds to the JSON property `endTime`
|
3432
|
-
# @return [String]
|
3433
|
-
attr_accessor :end_time
|
3434
|
-
|
3435
3203
|
def initialize(**args)
|
3436
3204
|
update!(**args)
|
3437
3205
|
end
|
3438
3206
|
|
3439
3207
|
# Update properties of this object
|
3440
3208
|
def update!(**args)
|
3209
|
+
@end_time = args[:end_time] if args.key?(:end_time)
|
3441
3210
|
@start_time = args[:start_time] if args.key?(:start_time)
|
3442
3211
|
@description = args[:description] if args.key?(:description)
|
3443
|
-
@end_time = args[:end_time] if args.key?(:end_time)
|
3444
3212
|
end
|
3445
3213
|
end
|
3446
3214
|
|
@@ -3472,6 +3240,238 @@ module Google
|
|
3472
3240
|
@end = args[:end] if args.key?(:end)
|
3473
3241
|
end
|
3474
3242
|
end
|
3243
|
+
|
3244
|
+
# Request message for `GetIamPolicy` method.
|
3245
|
+
class GetIamPolicyRequest
|
3246
|
+
include Google::Apis::Core::Hashable
|
3247
|
+
|
3248
|
+
def initialize(**args)
|
3249
|
+
update!(**args)
|
3250
|
+
end
|
3251
|
+
|
3252
|
+
# Update properties of this object
|
3253
|
+
def update!(**args)
|
3254
|
+
end
|
3255
|
+
end
|
3256
|
+
|
3257
|
+
# Response message for `TestIamPermissions` method.
|
3258
|
+
class TestIamPermissionsResponse
|
3259
|
+
include Google::Apis::Core::Hashable
|
3260
|
+
|
3261
|
+
# A subset of `TestPermissionsRequest.permissions` that the caller is
|
3262
|
+
# allowed.
|
3263
|
+
# Corresponds to the JSON property `permissions`
|
3264
|
+
# @return [Array<String>]
|
3265
|
+
attr_accessor :permissions
|
3266
|
+
|
3267
|
+
def initialize(**args)
|
3268
|
+
update!(**args)
|
3269
|
+
end
|
3270
|
+
|
3271
|
+
# Update properties of this object
|
3272
|
+
def update!(**args)
|
3273
|
+
@permissions = args[:permissions] if args.key?(:permissions)
|
3274
|
+
end
|
3275
|
+
end
|
3276
|
+
|
3277
|
+
#
|
3278
|
+
class SearchReferencesResponse
|
3279
|
+
include Google::Apis::Core::Hashable
|
3280
|
+
|
3281
|
+
# The matching references.
|
3282
|
+
# Corresponds to the JSON property `references`
|
3283
|
+
# @return [Array<Google::Apis::GenomicsV1::Reference>]
|
3284
|
+
attr_accessor :references
|
3285
|
+
|
3286
|
+
# The continuation token, which is used to page through large result sets.
|
3287
|
+
# Provide this value in a subsequent request to return the next page of
|
3288
|
+
# results. This field will be empty if there aren't any additional results.
|
3289
|
+
# Corresponds to the JSON property `nextPageToken`
|
3290
|
+
# @return [String]
|
3291
|
+
attr_accessor :next_page_token
|
3292
|
+
|
3293
|
+
def initialize(**args)
|
3294
|
+
update!(**args)
|
3295
|
+
end
|
3296
|
+
|
3297
|
+
# Update properties of this object
|
3298
|
+
def update!(**args)
|
3299
|
+
@references = args[:references] if args.key?(:references)
|
3300
|
+
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
3301
|
+
end
|
3302
|
+
end
|
3303
|
+
|
3304
|
+
#
|
3305
|
+
class SearchAnnotationSetsRequest
|
3306
|
+
include Google::Apis::Core::Hashable
|
3307
|
+
|
3308
|
+
# The continuation token, which is used to page through large result sets.
|
3309
|
+
# To get the next page of results, set this parameter to the value of
|
3310
|
+
# `nextPageToken` from the previous response.
|
3311
|
+
# Corresponds to the JSON property `pageToken`
|
3312
|
+
# @return [String]
|
3313
|
+
attr_accessor :page_token
|
3314
|
+
|
3315
|
+
# The maximum number of results to return in a single page. If unspecified,
|
3316
|
+
# defaults to 128. The maximum value is 1024.
|
3317
|
+
# Corresponds to the JSON property `pageSize`
|
3318
|
+
# @return [Fixnum]
|
3319
|
+
attr_accessor :page_size
|
3320
|
+
|
3321
|
+
# Required. The dataset IDs to search within. Caller must have `READ` access
|
3322
|
+
# to these datasets.
|
3323
|
+
# Corresponds to the JSON property `datasetIds`
|
3324
|
+
# @return [Array<String>]
|
3325
|
+
attr_accessor :dataset_ids
|
3326
|
+
|
3327
|
+
# If specified, only annotation sets that have any of these types are
|
3328
|
+
# returned.
|
3329
|
+
# Corresponds to the JSON property `types`
|
3330
|
+
# @return [Array<String>]
|
3331
|
+
attr_accessor :types
|
3332
|
+
|
3333
|
+
# Only return annotations sets for which a substring of the name matches this
|
3334
|
+
# string (case insensitive).
|
3335
|
+
# Corresponds to the JSON property `name`
|
3336
|
+
# @return [String]
|
3337
|
+
attr_accessor :name
|
3338
|
+
|
3339
|
+
# If specified, only annotation sets associated with the given reference set
|
3340
|
+
# are returned.
|
3341
|
+
# Corresponds to the JSON property `referenceSetId`
|
3342
|
+
# @return [String]
|
3343
|
+
attr_accessor :reference_set_id
|
3344
|
+
|
3345
|
+
def initialize(**args)
|
3346
|
+
update!(**args)
|
3347
|
+
end
|
3348
|
+
|
3349
|
+
# Update properties of this object
|
3350
|
+
def update!(**args)
|
3351
|
+
@page_token = args[:page_token] if args.key?(:page_token)
|
3352
|
+
@page_size = args[:page_size] if args.key?(:page_size)
|
3353
|
+
@dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
|
3354
|
+
@types = args[:types] if args.key?(:types)
|
3355
|
+
@name = args[:name] if args.key?(:name)
|
3356
|
+
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
3357
|
+
end
|
3358
|
+
end
|
3359
|
+
|
3360
|
+
# The read group set search response.
|
3361
|
+
class SearchReadGroupSetsResponse
|
3362
|
+
include Google::Apis::Core::Hashable
|
3363
|
+
|
3364
|
+
# The continuation token, which is used to page through large result sets.
|
3365
|
+
# Provide this value in a subsequent request to return the next page of
|
3366
|
+
# results. This field will be empty if there aren't any additional results.
|
3367
|
+
# Corresponds to the JSON property `nextPageToken`
|
3368
|
+
# @return [String]
|
3369
|
+
attr_accessor :next_page_token
|
3370
|
+
|
3371
|
+
# The list of matching read group sets.
|
3372
|
+
# Corresponds to the JSON property `readGroupSets`
|
3373
|
+
# @return [Array<Google::Apis::GenomicsV1::ReadGroupSet>]
|
3374
|
+
attr_accessor :read_group_sets
|
3375
|
+
|
3376
|
+
def initialize(**args)
|
3377
|
+
update!(**args)
|
3378
|
+
end
|
3379
|
+
|
3380
|
+
# Update properties of this object
|
3381
|
+
def update!(**args)
|
3382
|
+
@next_page_token = args[:next_page_token] if args.key?(:next_page_token)
|
3383
|
+
@read_group_sets = args[:read_group_sets] if args.key?(:read_group_sets)
|
3384
|
+
end
|
3385
|
+
end
|
3386
|
+
|
3387
|
+
# A linear alignment can be represented by one CIGAR string. Describes the
|
3388
|
+
# mapped position and local alignment of the read to the reference.
|
3389
|
+
class LinearAlignment
|
3390
|
+
include Google::Apis::Core::Hashable
|
3391
|
+
|
3392
|
+
# An abstraction for referring to a genomic position, in relation to some
|
3393
|
+
# already known reference. For now, represents a genomic position as a
|
3394
|
+
# reference name, a base number on that reference (0-based), and a
|
3395
|
+
# determination of forward or reverse strand.
|
3396
|
+
# Corresponds to the JSON property `position`
|
3397
|
+
# @return [Google::Apis::GenomicsV1::Position]
|
3398
|
+
attr_accessor :position
|
3399
|
+
|
3400
|
+
# Represents the local alignment of this sequence (alignment matches, indels,
|
3401
|
+
# etc) against the reference.
|
3402
|
+
# Corresponds to the JSON property `cigar`
|
3403
|
+
# @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
|
3404
|
+
attr_accessor :cigar
|
3405
|
+
|
3406
|
+
# The mapping quality of this alignment. Represents how likely
|
3407
|
+
# the read maps to this position as opposed to other locations.
|
3408
|
+
# Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
|
3409
|
+
# the nearest integer.
|
3410
|
+
# Corresponds to the JSON property `mappingQuality`
|
3411
|
+
# @return [Fixnum]
|
3412
|
+
attr_accessor :mapping_quality
|
3413
|
+
|
3414
|
+
def initialize(**args)
|
3415
|
+
update!(**args)
|
3416
|
+
end
|
3417
|
+
|
3418
|
+
# Update properties of this object
|
3419
|
+
def update!(**args)
|
3420
|
+
@position = args[:position] if args.key?(:position)
|
3421
|
+
@cigar = args[:cigar] if args.key?(:cigar)
|
3422
|
+
@mapping_quality = args[:mapping_quality] if args.key?(:mapping_quality)
|
3423
|
+
end
|
3424
|
+
end
|
3425
|
+
|
3426
|
+
#
|
3427
|
+
class SearchReferencesRequest
|
3428
|
+
include Google::Apis::Core::Hashable
|
3429
|
+
|
3430
|
+
# If present, return references for which a prefix of any of
|
3431
|
+
# sourceAccessions match
|
3432
|
+
# any of these strings. Accession numbers typically have a main number and a
|
3433
|
+
# version, for example `GCF_000001405.26`.
|
3434
|
+
# Corresponds to the JSON property `accessions`
|
3435
|
+
# @return [Array<String>]
|
3436
|
+
attr_accessor :accessions
|
3437
|
+
|
3438
|
+
# The continuation token, which is used to page through large result sets.
|
3439
|
+
# To get the next page of results, set this parameter to the value of
|
3440
|
+
# `nextPageToken` from the previous response.
|
3441
|
+
# Corresponds to the JSON property `pageToken`
|
3442
|
+
# @return [String]
|
3443
|
+
attr_accessor :page_token
|
3444
|
+
|
3445
|
+
# If present, return only references which belong to this reference set.
|
3446
|
+
# Corresponds to the JSON property `referenceSetId`
|
3447
|
+
# @return [String]
|
3448
|
+
attr_accessor :reference_set_id
|
3449
|
+
|
3450
|
+
# The maximum number of results to return in a single page. If unspecified,
|
3451
|
+
# defaults to 1024. The maximum value is 4096.
|
3452
|
+
# Corresponds to the JSON property `pageSize`
|
3453
|
+
# @return [Fixnum]
|
3454
|
+
attr_accessor :page_size
|
3455
|
+
|
3456
|
+
# If present, return references for which the
|
3457
|
+
# md5checksum matches exactly.
|
3458
|
+
# Corresponds to the JSON property `md5checksums`
|
3459
|
+
# @return [Array<String>]
|
3460
|
+
attr_accessor :md5checksums
|
3461
|
+
|
3462
|
+
def initialize(**args)
|
3463
|
+
update!(**args)
|
3464
|
+
end
|
3465
|
+
|
3466
|
+
# Update properties of this object
|
3467
|
+
def update!(**args)
|
3468
|
+
@accessions = args[:accessions] if args.key?(:accessions)
|
3469
|
+
@page_token = args[:page_token] if args.key?(:page_token)
|
3470
|
+
@reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
|
3471
|
+
@page_size = args[:page_size] if args.key?(:page_size)
|
3472
|
+
@md5checksums = args[:md5checksums] if args.key?(:md5checksums)
|
3473
|
+
end
|
3474
|
+
end
|
3475
3475
|
end
|
3476
3476
|
end
|
3477
3477
|
end
|