gnuplotter 0.0.0 → 1.0.0

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data/README.md CHANGED
@@ -1,2 +1,84 @@
1
1
  # gnuplotter
2
- Ruby wrapper for gnuplot
2
+
3
+ Gnuplot is a very powerful tool to plot scientific data. This is a Ruby wrapper
4
+ around Gnuplot with a syntax closely following Gnuplot's.
5
+
6
+ Installation
7
+ ------------
8
+ First you must install Gnuplot. Follow the instruction at the Gnuplot website:
9
+
10
+ http://www.gnuplot.info/
11
+
12
+ Then install the Ruby gem run:
13
+
14
+ `gem install gnuplotter`
15
+
16
+ All done!
17
+
18
+ Example
19
+ -------
20
+
21
+ ```
22
+ #!/usr/bin/env ruby
23
+
24
+ require 'gnuplotter'
25
+
26
+ data1 = [
27
+ [0, 0, 0.5, 0.5],
28
+ [0, 1, -0.5, 0.5],
29
+ [1, 1, 1, 0]
30
+ ]
31
+
32
+ data2 = [
33
+ [10, 10, 1.5, 1.5],
34
+ [10, 11, -1.5, 1.5],
35
+ [11, 11, 11, 10]
36
+ ]
37
+
38
+ gp = GnuPlotter.new
39
+
40
+ gp.set title: "Foobar"
41
+ gp.set terminal: "dumb"
42
+
43
+ gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'foo'") do |plotter|
44
+ data1.map { |d| plotter << d }
45
+ end
46
+
47
+ gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'bar'") do |plotter|
48
+ data2.map { |d| plotter << d }
49
+ end
50
+
51
+ puts gp.plot
52
+ ```
53
+
54
+ See more examples in the `examples/` directory.
55
+
56
+ Testing
57
+ -------
58
+ gnuplotter have a `to_gp` method that dumps a standaline Gnuplot script with
59
+ data, which is very useful for debugging and testing. For the above example
60
+ the output is:
61
+
62
+ ```
63
+ set title "Foobar"
64
+ set terminal dumb
65
+ plot "-" using 1:2:3:4 with vectors nohead title 'foo', "-" using 1:2:3:4 with vectors nohead title 'bar'
66
+ 0 0 0.5 0.5
67
+ 0 1 -0.5 0.5
68
+ 1 1 1 0
69
+ e
70
+ 10 10 1.5 1.5
71
+ 10 11 -1.5 1.5
72
+ 11 11 11 10
73
+ e
74
+ ```
75
+
76
+
77
+ Author
78
+ ------
79
+ Copyright 2015 Martin Asser Hansen mail@maasha.dk
80
+
81
+ License
82
+ -------
83
+ GPL/v2
84
+
@@ -0,0 +1,17 @@
1
+ require 'pp'
2
+ require 'bundler'
3
+ require 'rake/testtask'
4
+
5
+ Bundler::GemHelper.install_tasks
6
+
7
+ task :default => "test"
8
+
9
+ Rake::TestTask.new do |t|
10
+ t.test_files = Dir['test/*'].select { |f| File.basename(f).match(/^test_.+\.rb$/) }
11
+ t.warning = true
12
+ end
13
+
14
+ desc "Add or update rdoc"
15
+ task :doc do
16
+ `rdoc lib/`
17
+ end
@@ -0,0 +1,28 @@
1
+ #!/usr/bin/env ruby
2
+
3
+ require 'gnuplotter'
4
+
5
+ gp = GnuPlotter.new
6
+ gp.set title: "Heatmap"
7
+ gp.set view: "map"
8
+ gp.set autoscale: "xfix"
9
+ gp.set autoscale: "yfix"
10
+ gp.set nokey: true
11
+ gp.set tic: "scale 0"
12
+ gp.set palette: "rgbformulae 22,13,10"
13
+ gp.unset xtics: true
14
+ gp.unset ytics: true
15
+
16
+ gp.add_dataset(matrix: :true, with: "image") do |plotter|
17
+ row = []
18
+
19
+ 0.upto(400) do |i|
20
+ 0.upto(600) do |j|
21
+ row[j] = i + j
22
+ end
23
+
24
+ plotter << row
25
+ end
26
+ end
27
+
28
+ gp.splot
@@ -0,0 +1,31 @@
1
+ #!/usr/bin/env ruby
2
+
3
+ require 'gnuplotter'
4
+
5
+ data = [
6
+ ["Dogs", 343],
7
+ ["Fishes", 143],
8
+ ["Cats", 123],
9
+ ["Birds", 321],
10
+ ["Bugs", 80],
11
+ ["Cows", 200],
12
+ ["Snakes", 140]
13
+ ]
14
+
15
+ gp = GnuPlotter.new
16
+ gp.set terminal: "dumb"
17
+ gp.set title: "Animals"
18
+ gp.set xlabel: "Type"
19
+ gp.set ylabel: "Count"
20
+ gp.set yrange: "[0:*]"
21
+ gp.set autoscale: "xfix"
22
+ gp.set style: "fill solid 0.5 border"
23
+ gp.set xtics: "out"
24
+ gp.set ytics: "out"
25
+ gp.set xtics: "rotate" # Don't work with dumb terminal, try "png"
26
+
27
+ gp.add_dataset(using: "2:xticlabels(1)", with: "boxes notitle") do |plotter|
28
+ data.each { |d| plotter << d }
29
+ end
30
+
31
+ puts gp.plot
@@ -0,0 +1,30 @@
1
+ #!/usr/bin/env ruby
2
+
3
+ require 'gnuplotter'
4
+
5
+ data1 = [
6
+ [0, 0, 0.5, 0.5],
7
+ [0, 1, -0.5, 0.5],
8
+ [1, 1, 1, 0]
9
+ ]
10
+
11
+ data2 = [
12
+ [10, 10, 1.5, 1.5],
13
+ [10, 11, -1.5, 1.5],
14
+ [11, 11, 11, 10]
15
+ ]
16
+
17
+ gp = GnuPlotter.new
18
+
19
+ gp.set title: "Foobar"
20
+ gp.set terminal: "dumb"
21
+
22
+ gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'foo'") do |plotter|
23
+ data1.map { |d| plotter << d }
24
+ end
25
+
26
+ gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'bar'") do |plotter|
27
+ data2.map { |d| plotter << d }
28
+ end
29
+
30
+ puts gp.plot
@@ -17,7 +17,5 @@ Gem::Specification.new do |s|
17
17
  s.rubygems_version = "2.0.0"
18
18
  s.files = `git ls-files`.split("\n")
19
19
  s.test_files = `git ls-files -- {test,spec,features}/*`.split("\n")
20
- s.executables = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
21
- s.extra_rdoc_files = Dir["wiki/*.rdoc"]
22
20
  s.require_paths = ["lib"]
23
21
  end
@@ -0,0 +1,259 @@
1
+ # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #
2
+ # #
3
+ # Copyright (C) 2015 Martin Asser Hansen (mail@maasha.dk). #
4
+ # #
5
+ # This program is free software; you can redistribute it and/or #
6
+ # modify it under the terms of the GNU General Public License #
7
+ # as published by the Free Software Foundation; either version 2 #
8
+ # of the License, or (at your option) any later version. #
9
+ # #
10
+ # This program is distributed in the hope that it will be useful, #
11
+ # but WITHOUT ANY WARRANTY; without even the implied warranty of #
12
+ # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
13
+ # GNU General Public License for more details. #
14
+ # #
15
+ # You should have received a copy of the GNU General Public License #
16
+ # along with this program; if not, write to the Free Software #
17
+ # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #
18
+ # #
19
+ # http://www.gnu.org/copyleft/gpl.html #
20
+ # #
21
+ # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #
22
+
23
+ require 'gnuplotter/version'
24
+ require 'tempfile'
25
+ require 'open3'
26
+
27
+ # Error class for all things Gnuplotter.
28
+ class GnuPlotterError < StandardError; end
29
+
30
+ class GnuPlotter
31
+
32
+ # Quotes around the values of the below keys are stripped.
33
+ NOQUOTE = [
34
+ :auto,
35
+ :autoscale,
36
+ :cbrange,
37
+ :border,
38
+ :boxwidth,
39
+ :datafile,
40
+ :grid,
41
+ :key,
42
+ :logscale,
43
+ :nocbtics,
44
+ :palette,
45
+ :rtics,
46
+ :terminal,
47
+ :tic,
48
+ :style,
49
+ :view,
50
+ :yrange,
51
+ :ytics,
52
+ :xrange,
53
+ :xtics,
54
+ :ztics
55
+ ]
56
+
57
+ # Constructor method for a GnuPlot object.
58
+ def initialize
59
+ @options = Hash.new { |h1, k1| h1[k1] = Hash.new { |h2, k2| h2[k2] = [] } }
60
+ @datasets = []
61
+ end
62
+
63
+ # Method to set an option in the GnuPlot environment e.g:
64
+ # set(title: "Nobel Prize")
65
+ # set(grid: :true) # note no such thing as set(grid).
66
+ def set(options)
67
+ raise GnuPlotterError, "Non-hash options given" unless options.is_a? Hash
68
+
69
+ options.each do |key, value|
70
+ @options[:set][key.to_sym] << value
71
+ end
72
+
73
+ self
74
+ end
75
+
76
+ # Method to unset an option in the GnuPlot environment e.g:
77
+ # unset(ytics: true) # note no such thing as unset(ytics).
78
+ def unset(options)
79
+ raise GnuPlotterError, "Non-hash options given" unless options.is_a? Hash
80
+
81
+ options.each do |key, value|
82
+ @options[:unset][key.to_sym] << value || true
83
+ end
84
+
85
+ self
86
+ end
87
+
88
+ # Method that returns a GnuPlot script as a list of lines.
89
+ def to_gp(cmd = "plot")
90
+ if ! @datasets.empty?
91
+ data_lines = []
92
+
93
+ @datasets.each do |dataset|
94
+ data_lines.push(*dataset.format_data, "e")
95
+ end
96
+
97
+ plot_settings + [data_settings(cmd, true)] + data_lines
98
+ else
99
+ plot_settings
100
+ end
101
+ end
102
+
103
+ # Method to add a dataset to the current GnuPlot.
104
+ # add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'bar'") do |plotter|
105
+ # data.map { |d| plotter << d }
106
+ # end
107
+ def add_dataset(options = {})
108
+ raise GnuPlotterError, "No block given" unless block_given?
109
+
110
+ dataset = DataSet.new(options)
111
+ @datasets << dataset
112
+
113
+ yield dataset
114
+ end
115
+
116
+ # Method to execute the plotting of added datasets.
117
+ # Any plot data, i.e. dumb terminal, is returned.
118
+ def plot
119
+ gnuplot("plot")
120
+ end
121
+
122
+ # Method to execute the splotting of added datasets.
123
+ # Any plot data, i.e. dumb terminal, is returned.
124
+ def splot
125
+ gnuplot("splot")
126
+ end
127
+
128
+ private
129
+
130
+ # Method that calls gnuplot via open3 and performs the plotting.
131
+ # Any plot data, i.e. dumb terminal, is returned.
132
+ def gnuplot(method)
133
+ @datasets.each { |dataset| dataset.close }
134
+
135
+ result = nil
136
+
137
+ Open3.popen3("gnuplot -persist") do |stdin, stdout, stderr, wait_thr|
138
+ plot_settings.each { |line| stdin.puts line }
139
+
140
+ if @datasets.empty?
141
+ stdin.puts "#{method} 1/0"
142
+ else
143
+ stdin.puts data_settings(method)
144
+ end
145
+
146
+ stdin.close
147
+ result = stdout.read
148
+ stdout.close
149
+
150
+ exit_status = wait_thr.value
151
+
152
+ unless exit_status.success?
153
+ raise GnuPlotterError, stderr.read
154
+ end
155
+ end
156
+
157
+ @datasets.each { |dataset| dataset.delete }
158
+
159
+ result
160
+ end
161
+
162
+ # Returns a list of lines with the plot settings.
163
+ def plot_settings
164
+ lines = []
165
+
166
+ @options.each do |method, options|
167
+ options.each do |key, list|
168
+ list.each do |value|
169
+ if value == :true or value === true
170
+ lines << %Q{#{method} #{key}}
171
+ elsif NOQUOTE.include? key.to_sym
172
+ lines << %Q{#{method} #{key} #{value}}
173
+ else
174
+ lines << %Q{#{method} #{key} "#{value}"}
175
+ end
176
+ end
177
+ end
178
+ end
179
+
180
+ lines
181
+ end
182
+
183
+ # Returns one comma seperated line with plot settings for each dataset.
184
+ def data_settings(method, input = nil)
185
+ list = []
186
+
187
+ @datasets.each do |dataset|
188
+ list << dataset.format_options(input)
189
+ end
190
+
191
+ "#{method} " + list.join(", ")
192
+ end
193
+
194
+ # Nested class for GnuPlot datasets.
195
+ class DataSet
196
+ # Constructor for the DataSet object.
197
+ def initialize(options = {})
198
+ @options = options
199
+ @file = Tempfile.new("gp")
200
+ @io = @file.open
201
+ end
202
+
203
+ # Write method.
204
+ def <<(*obj)
205
+ @io.puts obj.join(" ")
206
+ end
207
+
208
+ alias :write :<<
209
+
210
+ # Method to close a DataSet temporary file io.
211
+ def close
212
+ @io.close unless @io.closed?
213
+ end
214
+
215
+ # Method to delete a DataSet temporary file.
216
+ def delete
217
+ @io.close unless @io.closed?
218
+ @file.unlink if File.exist? @file.path
219
+ end
220
+
221
+ # Method that builds a plot/splot command string from dataset options.
222
+ def format_options(input = nil)
223
+ options = []
224
+
225
+ if input
226
+ options << %Q{"-"}
227
+ else
228
+ options << %Q{"#{@file.path}"}
229
+ end
230
+
231
+ @options.each do |key, value|
232
+ if value == :true
233
+ options << "#{key}"
234
+ else
235
+ options << "#{key} #{value}"
236
+ end
237
+ end
238
+
239
+ options.join(" ")
240
+ end
241
+
242
+ # Method that returns data lines from file.
243
+ def format_data
244
+ lines = []
245
+
246
+ @io.close if @io.respond_to? :close
247
+
248
+ File.open(@file) do |ios|
249
+ ios.each do |line|
250
+ line.chomp!
251
+
252
+ lines << line
253
+ end
254
+ end
255
+
256
+ lines
257
+ end
258
+ end
259
+ end
@@ -1,3 +1,3 @@
1
- module GnuPlotter
2
- VERSION = "0.0.0"
1
+ class GnuPlotter
2
+ VERSION = "1.0.0"
3
3
  end
@@ -0,0 +1,54 @@
1
+ # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #
2
+ # #
3
+ # Copyright (C) 2007-2014 Martin Asser Hansen (mail@maasha.dk). #
4
+ # #
5
+ # This program is free software; you can redistribute it and/or #
6
+ # modify it under the terms of the GNU General Public License #
7
+ # as published by the Free Software Foundation; either version 2 #
8
+ # of the License, or (at your option) any later version. #
9
+ # #
10
+ # This program is distributed in the hope that it will be useful, #
11
+ # but WITHOUT ANY WARRANTY; without even the implied warranty of #
12
+ # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
13
+ # GNU General Public License for more details. #
14
+ # #
15
+ # You should have received a copy of the GNU General Public License #
16
+ # along with this program; if not, write to the Free Software #
17
+ # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. #
18
+ # #
19
+ # http://www.gnu.org/copyleft/gpl.html #
20
+ # #
21
+ # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #
22
+ # #
23
+ # This software is part of the Biopieces framework (www.biopieces.org). #
24
+ # #
25
+ # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< #
26
+
27
+ require 'gnuplotter'
28
+ require 'test/unit'
29
+
30
+ module Kernel
31
+ def capture_stdout
32
+ out = StringIO.new
33
+ $stdout = out
34
+ yield
35
+ return out.string
36
+ ensure
37
+ $stdout = STDOUT
38
+ end
39
+
40
+ def capture_stderr
41
+ out = StringIO.new
42
+ $stderr = out
43
+ yield
44
+ return out.string
45
+ ensure
46
+ $stderr = STDERR
47
+ end
48
+ end
49
+
50
+ class Test::Unit::TestCase
51
+ def self.test(desc, &impl)
52
+ define_method("test #{desc}", &impl)
53
+ end
54
+ end
@@ -0,0 +1,108 @@
1
+ #!/usr/bin/env ruby
2
+ $:.unshift File.join(File.dirname(__FILE__), '..')
3
+
4
+ require 'test/helper'
5
+
6
+ class TestGnuPlotter < Test::Unit::TestCase
7
+ def setup
8
+ @data1 = [
9
+ [0, 0, 0.5, 0.5],
10
+ [0, 1, -0.5, 0.5],
11
+ [1, 1, 1, 0]
12
+ ]
13
+
14
+ @data2 = [
15
+ [10, 10, 1.5, 1.5],
16
+ [10, 11, -1.5, 1.5],
17
+ [11, 11, 11, 10]
18
+ ]
19
+
20
+ @gp = GnuPlotter.new.set(title: "test").set(terminal: "dumb")
21
+ end
22
+
23
+ test "#to_gp with no settings returns empty array" do
24
+ assert_equal([], GnuPlotter.new.to_gp)
25
+ end
26
+
27
+ test "#set with non-hash options raises" do
28
+ assert_raise(GnuPlotterError) { GnuPlotter.new.set("title") }
29
+ end
30
+
31
+ test "#unset with non-hash options raises" do
32
+ assert_raise(GnuPlotterError) { GnuPlotter.new.set("title") }
33
+ end
34
+
35
+ test "#to_gp with set quoted and unquoted options returns correctly" do
36
+ gp = GnuPlotter.new.set(title: "test").set(terminal: "dumb")
37
+ assert_equal(['set title "test"', 'set terminal dumb'], gp.to_gp)
38
+ end
39
+
40
+ test "#to_gp with unset quoted and unquoted options returns correctly" do
41
+ gp = GnuPlotter.new.unset(title: true).unset(terminal: true)
42
+ assert_equal(['unset title', 'unset terminal'], gp.to_gp)
43
+ end
44
+
45
+ test "#add_dataset without block raises" do
46
+ assert_raise(GnuPlotterError) { @gp.add_dataset }
47
+ end
48
+
49
+ test "#to_gp with one dataset returns correctly" do
50
+ @gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'foo'") do |plotter|
51
+ @data1.map { |d| plotter << d }
52
+ end
53
+
54
+ expected = [
55
+ 'set title "test"',
56
+ 'set terminal dumb',
57
+ 'plot "-" using 1:2:3:4 with vectors nohead title \'foo\'',
58
+ '0 0 0.5 0.5',
59
+ '0 1 -0.5 0.5',
60
+ '1 1 1 0',
61
+ 'e'
62
+ ]
63
+
64
+ assert_equal(expected, @gp.to_gp)
65
+ end
66
+
67
+ test "#to_gp with two datasets returns correctly" do
68
+ @gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'foo'") do |plotter|
69
+ @data1.map { |d| plotter << d }
70
+ end
71
+
72
+ @gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'bar'") do |plotter|
73
+ @data2.map { |d| plotter << d }
74
+ end
75
+
76
+ expected = [
77
+ 'set title "test"',
78
+ 'set terminal dumb',
79
+ 'plot "-" using 1:2:3:4 with vectors nohead title \'foo\', "-" using 1:2:3:4 with vectors nohead title \'bar\'',
80
+ '0 0 0.5 0.5',
81
+ '0 1 -0.5 0.5',
82
+ '1 1 1 0',
83
+ 'e',
84
+ '10 10 1.5 1.5',
85
+ '10 11 -1.5 1.5',
86
+ '11 11 11 10',
87
+ 'e'
88
+ ]
89
+
90
+ assert_equal(expected, @gp.to_gp)
91
+ end
92
+
93
+ test "#plot produces something" do
94
+ @gp.add_dataset(using: "1:2:3:4", with: "vectors nohead", title: "'foo'") do |plotter|
95
+ @data1.map { |d| plotter << d }
96
+ end
97
+
98
+ assert_equal(String, @gp.plot.class)
99
+ end
100
+
101
+ test "#splot produces something" do
102
+ @gp.add_dataset(matrix: "with lines notitle") do |plotter|
103
+ @data1.map { |d| plotter << d }
104
+ end
105
+
106
+ assert_equal(String, @gp.splot.class)
107
+ end
108
+ end
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: gnuplotter
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.0.0
4
+ version: 1.0.0
5
5
  platform: ruby
6
6
  authors:
7
7
  - Martin A. Hansen
8
8
  autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
- date: 2015-01-21 00:00:00.000000000 Z
11
+ date: 2015-01-26 00:00:00.000000000 Z
12
12
  dependencies: []
13
13
  description: GnuPlotter is a wrapper around gnuplot.
14
14
  email: mail@maasha.dk
@@ -19,8 +19,15 @@ files:
19
19
  - ".gitignore"
20
20
  - LICENSE
21
21
  - README.md
22
- - gnuplotter.gemspecs
22
+ - Rakefile
23
+ - examples/heatmap.rb
24
+ - examples/histogram.rb
25
+ - examples/lines.rb
26
+ - gnuplotter.gemspec
27
+ - lib/gnuplotter.rb
23
28
  - lib/gnuplotter/version.rb
29
+ - test/helper.rb
30
+ - test/test_gnuplotter.rb
24
31
  homepage: http://github.com/maasha/gnuplotter
25
32
  licenses:
26
33
  - GPL2
@@ -45,4 +52,6 @@ rubygems_version: 2.4.5
45
52
  signing_key:
46
53
  specification_version: 4
47
54
  summary: GnuPlotter
48
- test_files: []
55
+ test_files:
56
+ - test/helper.rb
57
+ - test/test_gnuplotter.rb