gnparser 0.4.0 → 0.5.0
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- checksums.yaml +4 -4
- data/.rubocop.yml +2 -0
- data/gnparser.gemspec +1 -0
- data/lib/gnparser/client.rb +14 -3
- data/lib/gnparser/version.rb +1 -1
- data/lib/gnparser_pb.rb +119 -116
- metadata +17 -4
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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-
metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: ee60435b3b83e338ef45457f0ac6c809dac4e7b6efad9e96ee9f3ffc66363c76
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4
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data.tar.gz: eed51e44fcfe2ee9939e0201ffb768e259acfdbbc60c9701efc5e0ce147c215d
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SHA512:
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-
metadata.gz:
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data.tar.gz:
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+
metadata.gz: 3b7183db1c922b54d8d8e44089c011df900c9c9652d1f444eff139478c5dcbf14b01d91c3cbc6c37b8c5e514e2ef616336c76cc7c507773f1526ac0838b1664d
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7
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+
data.tar.gz: 490f323db0aae6c4bc6c6217de1f5eb05747da04c6ee6cfe46ed20c7a7e0aa89d7bf098f499bdea373b185d0de385a0e23caaca8c3d6b61a9af965650b4a03a3
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data/.rubocop.yml
CHANGED
data/gnparser.gemspec
CHANGED
data/lib/gnparser/client.rb
CHANGED
@@ -8,11 +8,22 @@ module GNparser
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8
8
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def initialize(host = '0.0.0.0', port = '8778')
|
9
9
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@stub = Pb::GNparser::Stub.new("#{host}:#{port}",
|
10
10
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:this_channel_is_insecure)
|
11
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-
return if parser_version.value
|
11
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+
return if supported_parser(parser_version.value)
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12
12
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13
13
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raise 'gRPC server of gnparser should be at least ' \
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14
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-
|
15
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-
'https://gitlab/gogna/gnparser/releases.'
|
14
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+
" #{PARSER_MIN_VERSION}.\n Download latest version from " \
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15
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+
'https://gitlab/gogna/gnparser/releases. '
|
16
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+
end
|
17
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+
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18
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+
def supported_parser(ver_str)
|
19
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+
return true if ver_str == PARSER_MIN_VERSION
|
20
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+
|
21
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+
ver = ver_str[1..-1].split('.')
|
22
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+
ref = PARSER_MIN_VERSION[1..-1].split('.')
|
23
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+
return true if ver[0].to_i > ref[0].to_i || ver[1].to_i > ref[1].to_i ||
|
24
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+
ver[2].to_i > ref[2].to_i
|
25
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+
|
26
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+
false
|
16
27
|
end
|
17
28
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18
29
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# parser_version retrieves the version of gnparser used by gRPC service.
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data/lib/gnparser/version.rb
CHANGED
data/lib/gnparser_pb.rb
CHANGED
@@ -4,124 +4,127 @@
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4
4
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require 'google/protobuf'
|
5
5
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6
6
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Google::Protobuf::DescriptorPool.generated_pool.build do
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7
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-
|
8
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-
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9
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-
|
10
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-
|
11
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-
add_message "pb.Void" do
|
12
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-
end
|
13
|
-
add_message "pb.InputArray" do
|
14
|
-
optional :jobs_number, :int32, 1
|
15
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-
optional :skip_cleaning, :bool, 2
|
16
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-
repeated :names, :string, 3
|
17
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-
end
|
18
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-
add_message "pb.OutputArray" do
|
19
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-
repeated :output, :message, 1, "pb.Parsed"
|
20
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-
end
|
21
|
-
add_message "pb.Parsed" do
|
22
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-
optional :parsed, :bool, 1
|
23
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-
optional :quality, :int32, 2
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24
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-
repeated :quality_warning, :message, 3, "pb.QualityWarning"
|
25
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-
optional :verbatim, :string, 4
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26
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-
optional :normalized, :string, 5
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27
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-
optional :canonical, :message, 6, "pb.Canonical"
|
28
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-
optional :authorship, :message, 7, "pb.Authorship"
|
29
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-
repeated :positions, :message, 8, "pb.Position"
|
30
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-
optional :hybrid, :bool, 9
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31
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-
optional :bacteria, :bool, 10
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32
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-
optional :tail, :string, 11
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33
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-
optional :id, :string, 12
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34
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-
optional :parser_version, :string, 13
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35
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-
optional :cardinality, :int32, 14
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36
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-
optional :name_type, :enum, 15, "pb.NameType"
|
37
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-
repeated :details_hybrid_formula, :message, 20, "pb.HybridFormula"
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38
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-
oneof :details do
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39
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-
optional :uninomial, :message, 16, "pb.Uninomial"
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40
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-
optional :species, :message, 17, "pb.Species"
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41
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-
optional :comparison, :message, 18, "pb.Comparison"
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42
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-
optional :approximation, :message, 19, "pb.Approximation"
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7
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+
add_file("gnparser.proto", :syntax => :proto3) do
|
8
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+
add_message "pb.Version" do
|
9
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+
optional :value, :string, 1
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10
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+
optional :build_time, :string, 2
|
43
11
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end
|
44
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-
|
45
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-
|
46
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-
|
47
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-
optional :
|
48
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-
optional :
|
49
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-
|
50
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-
|
12
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+
add_message "pb.Void" do
|
13
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+
end
|
14
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+
add_message "pb.InputArray" do
|
15
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+
optional :jobs_number, :int32, 1
|
16
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+
optional :skip_cleaning, :bool, 2
|
17
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+
repeated :names, :string, 3
|
18
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+
end
|
19
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+
add_message "pb.OutputArray" do
|
20
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+
repeated :output, :message, 1, "pb.Parsed"
|
21
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+
end
|
22
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+
add_message "pb.Parsed" do
|
23
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+
optional :parsed, :bool, 1
|
24
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+
optional :quality, :int32, 2
|
25
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+
repeated :quality_warning, :message, 3, "pb.QualityWarning"
|
26
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+
optional :verbatim, :string, 4
|
27
|
+
optional :normalized, :string, 5
|
28
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+
optional :canonical, :message, 6, "pb.Canonical"
|
29
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+
optional :authorship, :message, 7, "pb.Authorship"
|
30
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+
repeated :positions, :message, 8, "pb.Position"
|
31
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+
optional :hybrid, :bool, 9
|
32
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+
optional :bacteria, :bool, 10
|
33
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+
optional :tail, :string, 11
|
34
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+
optional :id, :string, 12
|
35
|
+
optional :parser_version, :string, 13
|
36
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+
optional :cardinality, :int32, 14
|
37
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+
optional :name_type, :enum, 15, "pb.NameType"
|
38
|
+
repeated :details_hybrid_formula, :message, 20, "pb.HybridFormula"
|
39
|
+
oneof :details do
|
40
|
+
optional :uninomial, :message, 16, "pb.Uninomial"
|
41
|
+
optional :species, :message, 17, "pb.Species"
|
42
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+
optional :comparison, :message, 18, "pb.Comparison"
|
43
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+
optional :approximation, :message, 19, "pb.Approximation"
|
44
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+
end
|
45
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+
end
|
46
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+
add_message "pb.HybridFormula" do
|
47
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+
oneof :element do
|
48
|
+
optional :uninomial, :message, 1, "pb.Uninomial"
|
49
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+
optional :species, :message, 2, "pb.Species"
|
50
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+
optional :comparison, :message, 3, "pb.Comparison"
|
51
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+
optional :approximation, :message, 4, "pb.Approximation"
|
52
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+
end
|
53
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+
end
|
54
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+
add_message "pb.Canonical" do
|
55
|
+
optional :stem, :string, 1
|
56
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+
optional :simple, :string, 2
|
57
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+
optional :full, :string, 3
|
58
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+
end
|
59
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+
add_message "pb.Position" do
|
60
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+
optional :type, :string, 1
|
61
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+
optional :start, :int32, 2
|
62
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+
optional :end, :int32, 3
|
63
|
+
end
|
64
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+
add_message "pb.QualityWarning" do
|
65
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+
optional :quality, :int32, 1
|
66
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+
optional :message, :string, 2
|
67
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+
end
|
68
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+
add_message "pb.Uninomial" do
|
69
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+
optional :value, :string, 1
|
70
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+
optional :rank, :string, 2
|
71
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+
optional :parent, :string, 3
|
72
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+
optional :authorship, :message, 4, "pb.Authorship"
|
73
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+
end
|
74
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+
add_message "pb.Species" do
|
75
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+
optional :genus, :string, 1
|
76
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+
optional :sub_genus, :string, 2
|
77
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+
optional :species, :string, 3
|
78
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+
optional :species_authorship, :message, 4, "pb.Authorship"
|
79
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+
repeated :infra_species, :message, 5, "pb.InfraSpecies"
|
80
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+
end
|
81
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+
add_message "pb.InfraSpecies" do
|
82
|
+
optional :value, :string, 1
|
83
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+
optional :rank, :string, 2
|
84
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+
optional :authorship, :message, 3, "pb.Authorship"
|
85
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+
end
|
86
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+
add_message "pb.Comparison" do
|
87
|
+
optional :genus, :string, 1
|
88
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+
optional :species, :string, 2
|
89
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+
optional :species_authorship, :message, 3, "pb.Authorship"
|
90
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+
optional :comparison, :string, 4
|
91
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+
end
|
92
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+
add_message "pb.Approximation" do
|
93
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+
optional :genus, :string, 1
|
94
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+
optional :species, :string, 2
|
95
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+
optional :species_authorship, :message, 3, "pb.Authorship"
|
96
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+
optional :approximation, :string, 4
|
97
|
+
optional :ignored, :string, 5
|
98
|
+
end
|
99
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+
add_message "pb.Authorship" do
|
100
|
+
optional :value, :string, 1
|
101
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+
repeated :all_authors, :string, 2
|
102
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+
optional :original, :message, 3, "pb.AuthGroup"
|
103
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+
optional :combination, :message, 4, "pb.AuthGroup"
|
104
|
+
end
|
105
|
+
add_message "pb.AuthGroup" do
|
106
|
+
repeated :authors, :string, 1
|
107
|
+
optional :year, :string, 2
|
108
|
+
optional :approximate_year, :bool, 3
|
109
|
+
optional :ex_authors, :message, 4, "pb.Authors"
|
110
|
+
optional :emend_authors, :message, 5, "pb.Authors"
|
111
|
+
end
|
112
|
+
add_message "pb.Authors" do
|
113
|
+
repeated :authors, :string, 1
|
114
|
+
optional :year, :string, 2
|
115
|
+
optional :approximate_year, :bool, 3
|
116
|
+
end
|
117
|
+
add_enum "pb.NameType" do
|
118
|
+
value :NONE, 0
|
119
|
+
value :UNINOMIAL, 1
|
120
|
+
value :SPECIES, 2
|
121
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+
value :COMPARISON, 3
|
122
|
+
value :APPROX_SURROGATE, 4
|
123
|
+
value :SURROGATE, 5
|
124
|
+
value :NAMED_HYBRID, 6
|
125
|
+
value :HYBRID_FORMULA, 7
|
126
|
+
value :VIRUS, 8
|
51
127
|
end
|
52
|
-
end
|
53
|
-
add_message "pb.Canonical" do
|
54
|
-
optional :simple, :string, 1
|
55
|
-
optional :full, :string, 2
|
56
|
-
end
|
57
|
-
add_message "pb.Position" do
|
58
|
-
optional :type, :string, 1
|
59
|
-
optional :start, :int32, 2
|
60
|
-
optional :end, :int32, 3
|
61
|
-
end
|
62
|
-
add_message "pb.QualityWarning" do
|
63
|
-
optional :quality, :int32, 1
|
64
|
-
optional :message, :string, 2
|
65
|
-
end
|
66
|
-
add_message "pb.Uninomial" do
|
67
|
-
optional :value, :string, 1
|
68
|
-
optional :rank, :string, 2
|
69
|
-
optional :parent, :string, 3
|
70
|
-
optional :authorship, :message, 4, "pb.Authorship"
|
71
|
-
end
|
72
|
-
add_message "pb.Species" do
|
73
|
-
optional :genus, :string, 1
|
74
|
-
optional :sub_genus, :string, 2
|
75
|
-
optional :species, :string, 3
|
76
|
-
optional :species_authorship, :message, 4, "pb.Authorship"
|
77
|
-
repeated :infra_species, :message, 5, "pb.InfraSpecies"
|
78
|
-
end
|
79
|
-
add_message "pb.InfraSpecies" do
|
80
|
-
optional :value, :string, 1
|
81
|
-
optional :rank, :string, 2
|
82
|
-
optional :authorship, :message, 3, "pb.Authorship"
|
83
|
-
end
|
84
|
-
add_message "pb.Comparison" do
|
85
|
-
optional :genus, :string, 1
|
86
|
-
optional :species, :string, 2
|
87
|
-
optional :species_authorship, :message, 3, "pb.Authorship"
|
88
|
-
optional :comparison, :string, 4
|
89
|
-
end
|
90
|
-
add_message "pb.Approximation" do
|
91
|
-
optional :genus, :string, 1
|
92
|
-
optional :species, :string, 2
|
93
|
-
optional :species_authorship, :message, 3, "pb.Authorship"
|
94
|
-
optional :approximation, :string, 4
|
95
|
-
optional :ignored, :string, 5
|
96
|
-
end
|
97
|
-
add_message "pb.Authorship" do
|
98
|
-
optional :value, :string, 1
|
99
|
-
repeated :all_authors, :string, 2
|
100
|
-
optional :original, :message, 3, "pb.AuthGroup"
|
101
|
-
optional :combination, :message, 4, "pb.AuthGroup"
|
102
|
-
end
|
103
|
-
add_message "pb.AuthGroup" do
|
104
|
-
repeated :authors, :string, 1
|
105
|
-
optional :year, :string, 2
|
106
|
-
optional :approximate_year, :bool, 3
|
107
|
-
optional :ex_authors, :message, 4, "pb.Authors"
|
108
|
-
optional :emend_authors, :message, 5, "pb.Authors"
|
109
|
-
end
|
110
|
-
add_message "pb.Authors" do
|
111
|
-
repeated :authors, :string, 1
|
112
|
-
optional :year, :string, 2
|
113
|
-
optional :approximate_year, :bool, 3
|
114
|
-
end
|
115
|
-
add_enum "pb.NameType" do
|
116
|
-
value :NONE, 0
|
117
|
-
value :UNINOMIAL, 1
|
118
|
-
value :SPECIES, 2
|
119
|
-
value :COMPARISON, 3
|
120
|
-
value :APPROX_SURROGATE, 4
|
121
|
-
value :SURROGATE, 5
|
122
|
-
value :NAMED_HYBRID, 6
|
123
|
-
value :HYBRID_FORMULA, 7
|
124
|
-
value :VIRUS, 8
|
125
128
|
end
|
126
129
|
end
|
127
130
|
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: gnparser
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
|
+
version: 0.5.0
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Dmitry Mozzherin
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date:
|
11
|
+
date: 2020-02-18 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: grpc
|
@@ -108,6 +108,20 @@ dependencies:
|
|
108
108
|
- - "~>"
|
109
109
|
- !ruby/object:Gem::Version
|
110
110
|
version: '0.59'
|
111
|
+
- !ruby/object:Gem::Dependency
|
112
|
+
name: solargraph
|
113
|
+
requirement: !ruby/object:Gem::Requirement
|
114
|
+
requirements:
|
115
|
+
- - "~>"
|
116
|
+
- !ruby/object:Gem::Version
|
117
|
+
version: 0.38.0
|
118
|
+
type: :development
|
119
|
+
prerelease: false
|
120
|
+
version_requirements: !ruby/object:Gem::Requirement
|
121
|
+
requirements:
|
122
|
+
- - "~>"
|
123
|
+
- !ruby/object:Gem::Version
|
124
|
+
version: 0.38.0
|
111
125
|
description: |-
|
112
126
|
The gem parses scientific names into semantic elements
|
113
127
|
using gRPC of gnparser app written in Go.
|
@@ -150,8 +164,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
150
164
|
- !ruby/object:Gem::Version
|
151
165
|
version: '0'
|
152
166
|
requirements: []
|
153
|
-
|
154
|
-
rubygems_version: 2.7.6
|
167
|
+
rubygems_version: 3.0.3
|
155
168
|
signing_key:
|
156
169
|
specification_version: 4
|
157
170
|
summary: Scientific name parser
|