glydevkit 0.2.0.pre.beta.8-java → 0.2.2-java

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Files changed (4) hide show
  1. checksums.yaml +4 -4
  2. data/lib/glydevkit/cdk.rb +2 -2
  3. data/lib/init.rb +5 -3
  4. metadata +12 -12
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA256:
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- metadata.gz: e72117be7f35a53c3045666402087799c067689520d8f06e0fe47a2b4c63da9b
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- data.tar.gz: dea6e4376cea680f081ce7925e616c0ebcdae4be301f43e4416233d12bb085cc
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+ metadata.gz: ac4a870a4c76405dff80f0d340ecd99473a5710ca78c2d10694184a8d7039fd5
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+ data.tar.gz: ea0d3505095b3b369d9e6d7967cea6e16b19ac6f0695104227cbdaa3705568f1
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  SHA512:
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- metadata.gz: fdad663f3a199b9832f52b8d05efbff564d0bb453248e3904eea7be17c5035ef9d8702eef06f42de542716fcbf46fdcd93e7b40b443f28f277845e71f3032093
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- data.tar.gz: 966c9ca5af99fae16e5ef33f704e9346415bd1d33bea23ed95e691532e830652e6b21984c9762384381c313bb242499765afa2c425e30fc078a5ac2094aafaea
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+ metadata.gz: '097e50b184ef09c1e81ca7523b7a3e8b5258986ba55b3697968f4969e406cdac0689804e5c8deb79f9f47e00add448778bd3b265b0d271c8fd47519db3704274'
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+ data.tar.gz: efadd9b05efceed03d34d4148ff8aaace1b63b18964674dc58b56e2432245d26a3df5216cadc780a6570b00a8d1d619ad06004badfbe2e3e9e3ef5c733198fd5
data/lib/glydevkit/cdk.rb CHANGED
@@ -20,7 +20,7 @@ module GlyDevKit
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  end
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  end
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- def mol2svg(smiles)
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+ def mol2svg(smiles,scale)
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  begin
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  sp = SmilesParser.new(DefaultChemObjectBuilder.getInstance)
@@ -31,7 +31,7 @@ module GlyDevKit
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  molecule = sdg.molecule
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  depiction_gen = DepictionGenerator.new
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- return depiction_gen.withSize(30, 30).depict(molecule).toSvgStr
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+ return depiction_gen.withSize(30, 30).depict(molecule).toSvg.sub(/width=\'30.0mm\' height=\'30.0mm\' /,"/width='#{30 * scale}.0mm' height='#{30 * scale}.0mm'")
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  rescue => e
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  puts e.message
data/lib/init.rb CHANGED
@@ -112,9 +112,11 @@ Set recommended Java library version? (No/yes)
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  yaml_data = File.read(Dir.home+'/.glycobook/jar.yml')
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  parsed_data = YAML.load(yaml_data)
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  rows = []
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- rows.push(["name","version","Link"])
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+ #rows.push(["name","version","Link"])
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+ rows.push(["name","version"])
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  parsed_data["libraries"].each{|item|
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- rows.push([item["name"].to_s , item["version"].to_s , item["info"].to_s ])
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+ #rows.push([item["name"].to_s , item["version"].to_s , item["info"].to_s ])
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+ rows.push([item["name"].to_s , item["version"].to_s] )
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  }
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  puts Terminal::Table.new rows: rows
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  end
@@ -186,4 +188,4 @@ end
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  match_data ? match_data[1] : nil
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  end
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- end
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+ end
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: glydevkit
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  version: !ruby/object:Gem::Version
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- version: 0.2.0.pre.beta.8
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+ version: 0.2.2
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  platform: java
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  authors:
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  - Akihiro Fujita
@@ -11,56 +11,56 @@ cert_chain: []
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  date: 2024-10-18 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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+ name: java
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: 0.0.2
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- name: java
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- prerelease: false
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  type: :runtime
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+ prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: 0.0.2
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  - !ruby/object:Gem::Dependency
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+ name: yaml
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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- name: yaml
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- prerelease: false
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  type: :runtime
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+ prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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+ name: terminal-table
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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- name: terminal-table
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- prerelease: false
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  type: :runtime
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+ prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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+ name: colorize
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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- name: colorize
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- prerelease: false
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  type: :runtime
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+ prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
@@ -105,11 +105,11 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  version: '0'
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">"
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+ - - ">="
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  - !ruby/object:Gem::Version
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- version: 1.3.1
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+ version: '0'
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  requirements: []
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- rubygems_version: 3.3.26
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+ rubygems_version: 3.5.22
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  signing_key:
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  specification_version: 4
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  summary: The Glycoscience Development Kit (GlyDevKit) is a JRuby library for glyco-informatics