glydevkit 0.2.0.pre.beta.4-java → 0.2.0.pre.beta.5-java

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. checksums.yaml +4 -4
  2. data/jar.yml +2 -2
  3. data/lib/glydevkit.rb +1 -0
  4. data/lib/init.rb +13 -1
  5. metadata +34 -6
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA256:
3
- metadata.gz: 1af9e073bb01829204d62aa99b527a421ab3c44cf01ff34aca8d757a22d43bb7
4
- data.tar.gz: a639692f34e5d2c99fc18967dc3f1f3d02790584b272e737df1cbe69d6dbfad1
3
+ metadata.gz: d0da30a2e521fae84bf371cdd61851281e7130d6489d4aa4feb5bf012b63805d
4
+ data.tar.gz: 10216bee959df9fcfa6bf6fc7739ec44b4df0044cb4af79c1c05656fc119f871
5
5
  SHA512:
6
- metadata.gz: bfc94222a42b893911f7865be8823b73a30dbce0090349fa3692b67e25eae7924b38ac3a2867833ec8b3b9a696eb262a39de5c4a8f147c6cacd5d639832e3eb0
7
- data.tar.gz: 82ffbf1270ee2235c5785e812ce41779e01933aba7952e040a309864333ce3beca14e6ece778625731dc32fdb7c3230485cfee9cc3a0aa5f0dda096c5d63be2c
6
+ metadata.gz: f176a08059f508e695ff75125e28e4487b99b89f34f1d79521f05d5f1a0e94f00884b28ee7edcb7c91e5d482d7be88ce6973ba8cf32fe54609c765de078013dd
7
+ data.tar.gz: 2028230f807361373c1bbb0d89eca163a3f929e80ff795e38093dfbe49957ef2f01720a1f50c2487ebb9fd4335c976e4e57ea97bc8b426a097f682a6d8d1c252
data/jar.yml CHANGED
@@ -92,6 +92,6 @@ libraries:
92
92
 
93
93
  - name: MolWURCS
94
94
  info: https://gitlab.com/glycoinfo/molwurcs
95
- version: 0.10.2
96
- url: https://gitlab.com/glycoinfo/molwurcs/-/package_files/89942780/download
95
+ version: 0.11.0
96
+ url: https://gitlab.com/glycoinfo/molwurcs/-/package_files/106726568/download
97
97
  file: jar/MolWURCS.jar
data/lib/glydevkit.rb CHANGED
@@ -5,6 +5,7 @@ require 'glydevkit/Loggerinit'
5
5
  require 'glydevkit/glycan_builder'
6
6
  require 'glydevkit/glycan_format_converter'
7
7
  require 'glydevkit/gly_tou_can'
8
+ require 'glydevkit/cdk'
8
9
  require 'glydevkit/glytoucan_data_handler'
9
10
  require 'glydevkit/subsumption'
10
11
  require 'glydevkit/wurcs_frame_work'
data/lib/init.rb CHANGED
@@ -4,6 +4,7 @@ require 'fileutils'
4
4
  require 'yaml'
5
5
  require 'digest'
6
6
  require 'fileutils'
7
+ require 'terminal-table'
7
8
 
8
9
 
9
10
  module Init
@@ -89,7 +90,7 @@ Set recommended Java library version? (No/yes)
89
90
  end
90
91
  end
91
92
 
92
- def self.check_WFW_version()
93
+ def self.show_WFW_version()
93
94
  target_file_path = File.dirname(__FILE__) + '/jar/wurcsframework.jar'
94
95
  folder_path = File.dirname(__FILE__) + '/jar'
95
96
 
@@ -107,6 +108,17 @@ Set recommended Java library version? (No/yes)
107
108
  end
108
109
  end
109
110
 
111
+ def self.show_dependencies
112
+ yaml_data = File.read(Dir.home+'/.glycobook/jar.yml')
113
+ parsed_data = YAML.load(yaml_data)
114
+ rows = []
115
+ rows.push(["name","version","Link"])
116
+ parsed_data["libraries"].each{|item|
117
+ rows.push([item["name"].to_s , item["version"].to_s , item["info"].to_s ])
118
+ }
119
+ puts Terminal::Table.new rows: rows
120
+ end
121
+
110
122
  private
111
123
  # Loads the settings from a YAML file and prepares the environment.
112
124
  #
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: glydevkit
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.2.0.pre.beta.4
4
+ version: 0.2.0.pre.beta.5
5
5
  platform: java
6
6
  authors:
7
7
  - Akihiro Fujita
@@ -11,19 +11,47 @@ cert_chain: []
11
11
  date: 2024-10-18 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
- name: java
15
14
  requirement: !ruby/object:Gem::Requirement
16
15
  requirements:
17
16
  - - "~>"
18
17
  - !ruby/object:Gem::Version
19
18
  version: 0.0.2
20
- type: :runtime
19
+ name: java
21
20
  prerelease: false
21
+ type: :runtime
22
22
  version_requirements: !ruby/object:Gem::Requirement
23
23
  requirements:
24
24
  - - "~>"
25
25
  - !ruby/object:Gem::Version
26
26
  version: 0.0.2
27
+ - !ruby/object:Gem::Dependency
28
+ requirement: !ruby/object:Gem::Requirement
29
+ requirements:
30
+ - - ">="
31
+ - !ruby/object:Gem::Version
32
+ version: '0'
33
+ name: yaml
34
+ prerelease: false
35
+ type: :runtime
36
+ version_requirements: !ruby/object:Gem::Requirement
37
+ requirements:
38
+ - - ">="
39
+ - !ruby/object:Gem::Version
40
+ version: '0'
41
+ - !ruby/object:Gem::Dependency
42
+ requirement: !ruby/object:Gem::Requirement
43
+ requirements:
44
+ - - ">="
45
+ - !ruby/object:Gem::Version
46
+ version: '0'
47
+ name: terminal-table
48
+ prerelease: false
49
+ type: :runtime
50
+ version_requirements: !ruby/object:Gem::Requirement
51
+ requirements:
52
+ - - ">="
53
+ - !ruby/object:Gem::Version
54
+ version: '0'
27
55
  description: The Glycoscience Development Kit (GlyDevKit) is a JRuby library for glyco-informatics
28
56
  email:
29
57
  - akihirof0005@gmail.com
@@ -62,11 +90,11 @@ required_ruby_version: !ruby/object:Gem::Requirement
62
90
  version: '0'
63
91
  required_rubygems_version: !ruby/object:Gem::Requirement
64
92
  requirements:
65
- - - ">="
93
+ - - ">"
66
94
  - !ruby/object:Gem::Version
67
- version: '0'
95
+ version: 1.3.1
68
96
  requirements: []
69
- rubygems_version: 3.5.22
97
+ rubygems_version: 3.3.26
70
98
  signing_key:
71
99
  specification_version: 4
72
100
  summary: The Glycoscience Development Kit (GlyDevKit) is a JRuby library for glyco-informatics