glycobook 0.1.0.alpha.11-java → 0.1.0.alpha.13-java

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Files changed (6) hide show
  1. checksums.yaml +4 -4
  2. data/jar.yml +2 -2
  3. data/lib/glycobook/Loggerinit.rb +23 -0
  4. data/lib/glycobook/subsumption.rb +1 -1
  5. data/lib/glycobook.rb +1 -0
  6. metadata +8 -7
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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  SHA256:
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- metadata.gz: 81e4afed9860fe7eeae27e6162a98227ab0fe7606bc5daed5a253d590478ef81
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- data.tar.gz: 950712b122450887ef79d6e82f31c6f4b3ab80f55bafb052fda959f9d256765f
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+ metadata.gz: b6597991ee22be9f80490074af766e649928da064481acc7cec61696beda9212
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+ data.tar.gz: 84ff7fb0d1e34c14b2ba60e42870e96aa01080a9bd4aa96e9ac18610c93eadb2
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  SHA512:
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- metadata.gz: 2ed1e6e19e2e5408b70c2a7b12a00046250c1ced29e601034e031e8456a8f5fa7173ba550e23e8f844cddd99b34a7a53b45e4f86439d74ba209135a76c4a7b7c
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- data.tar.gz: a3f62cbfab0ba29c8d0a0bdf323b97b087591e0db68ceda7b80e14a7d64ed019b3e2da519a59ad64fda8cf6611a133b48f358165402cf003817a08871e34e935
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+ metadata.gz: 3d97a3ebcd70fac044adc0d16989da2f9ee8042f4d65b4f18977cd91df7e4216a724a6a9de34211ac22837b796ae69b6952589624060a392faae21b72d471316
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+ data.tar.gz: 66c04e3a9fd53e7d5c5ae219664c0100b2fe18e7d3b31f5deb243d8abcca109c111dabbabfa58964af819c633b2a4caa0bf0d7355b100aca8d655c7881aaf587
data/jar.yml CHANGED
@@ -12,9 +12,9 @@ list:
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  file: "jar/wurcsframework-1.0.1.jar"
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  - url: "https://repo1.maven.org/maven2/org/slf4j/slf4j-api/2.0.7/slf4j-api-2.0.7.jar"
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  file: "jar/slf4j-api.jar"
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- - url: "https://gitlab.glyco.info/glycosmos/subsumption/subsumption/-/package_files/238/download"
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- file: "jar/subsumption.jar"
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  - url: "https://gitlab.glyco.info/glycosmos/subsumption/subsumption/-/package_files/567/download"
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+ file: "jar/subsumption.jar"
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+ - url: "https://gitlab.glyco.info/glycosmos/glytoucangroup/archetype/lib/-/package_files/489/download"
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  file: "jar/archetype.jar"
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  - url: "https://gitlab.com/glycoinfo/glycanformatconverter/-/package_files/81149971/download"
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  file: "jar/glycanformatconverter.jar"
data/lib/glycobook/Loggerinit.rb ADDED
@@ -0,0 +1,23 @@
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+ require 'java'
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+ require 'logger'
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+ require_relative '../jar/slf4j-api.jar'
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+ java_import 'org.slf4j.LoggerFactory'
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+
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+ class JRubySLF4JLogger < Logger
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+ def initialize(name)
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+ super(STDOUT) # STDOUTはダミー、実際のログはSLF4Jを通じて行われる
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+ @java_logger = LoggerFactory.getLogger(name)
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+ end
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+
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+ def add(severity, message = nil, progname = nil)
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+ # Rubyのログレベルに応じてJavaのSLF4Jメソッドを呼び出す
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+ case severity
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+ when Logger::INFO
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+ @java_logger.info(message)
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+ # 他のログレベルについても同様に実装
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+ end
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+ end
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+ end
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+
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+ logger = JRubySLF4JLogger.new("MyLogger")
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+ logger.info("This is an info message from JRuby with SLF4J")
data/lib/glycobook/subsumption.rb CHANGED
@@ -57,7 +57,7 @@ class Subsumption
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  end
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  end
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- java_import 'org.glycoinfo.subsumption.generator.BaseComposition'
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+ java_import 'org.glycoinfo.subsumption.generator.BaseCompositionWithoutLinkage'
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  def baseComposition(w)
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  g = nil
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  begin
data/lib/glycobook.rb CHANGED
@@ -1,6 +1,7 @@
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  module GlycoBook
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  end
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+ require 'glycobook/Loggerinit'
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  require 'glycobook/glycan_builder'
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  require 'glycobook/glycan_format_converter'
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  require 'glycobook/gly_tou_can'
metadata CHANGED
@@ -1,24 +1,24 @@
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  --- !ruby/object:Gem::Specification
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  name: glycobook
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  version: !ruby/object:Gem::Version
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- version: 0.1.0.alpha.11
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+ version: 0.1.0.alpha.13
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  platform: java
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  authors:
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  - Akihiro Fujita
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- autorequire:
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+ autorequire:
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  bindir: bin
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  cert_chain: []
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  date: 2023-11-15 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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- name: java
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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  - - "~>"
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  - !ruby/object:Gem::Version
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  version: 0.0.2
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- type: :runtime
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+ name: java
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  prerelease: false
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+ type: :runtime
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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  - - "~>"
@@ -34,6 +34,7 @@ files:
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  - jar.yml
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  - lib/bookinit.rb
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  - lib/glycobook.rb
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+ - lib/glycobook/Loggerinit.rb
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  - lib/glycobook/gly_tou_can.rb
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  - lib/glycobook/glycan_builder.rb
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  - lib/glycobook/glycan_format_converter.rb
@@ -47,7 +48,7 @@ metadata:
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  source_code_uri: https://github.com/akihirof0005/glycobook
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  homepage_uri: https://github.com/akihirof0005/glycobook/blob/main/README.md
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  changelog_uri: https://github.com/akihirof0005/glycobooks
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- post_install_message:
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+ post_install_message:
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  rdoc_options: []
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  require_paths:
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  - lib
@@ -62,8 +63,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: 1.3.1
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  requirements: []
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- rubygems_version: 3.0.3.1
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- signing_key:
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+ rubygems_version: 3.2.33
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+ signing_key:
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  specification_version: 4
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  summary: Glycobook is a JRuby library for glycaninformatics
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  test_files: []