glossarist 2.6.4 → 2.6.5

checksums.yaml

@@ -1,7 +1,7 @@
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data/.rubocop_todo.yml

@@ -1,94 +1,23 @@
 # This configuration was generated by
 # `rubocop --auto-gen-config`
-# on 2026-05-12 04:13:45 UTC using RuboCop version 1.86.1.
+# on 2026-05-12 10:41:50 UTC using RuboCop version 1.86.1.
 # The point is for the user to remove these configuration records
 # one by one as the offenses are removed from the code base.
 # Note that changes in the inspected code, or installation of new
 # versions of RuboCop, may require this file to be generated again.
 
-# Offense count: 7
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: TreatCommentsAsGroupSeparators, ConsiderPunctuation.
-Bundler/OrderedGems:
-  Exclude:
-    - 'Gemfile'
-
 # Offense count: 1
 Gemspec/RequiredRubyVersion:
   Exclude:
     - 'glossarist.gemspec'
 
-# Offense count: 4
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: EnforcedStyle, IndentationWidth.
-# SupportedStyles: with_first_argument, with_fixed_indentation
-Layout/ArgumentAlignment:
-  Exclude:
-    - 'lib/glossarist/sts/import_result.rb'
-    - 'lib/glossarist/sts/importer.rb'
-    - 'lib/glossarist/sts/term_mapper.rb'
-
-# Offense count: 1
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: IndentationWidth.
-Layout/AssignmentIndentation:
-  Exclude:
-    - 'lib/glossarist/sts/term_mapper.rb'
-
-# Offense count: 6
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: EnforcedStyleAlignWith.
-# SupportedStylesAlignWith: either, start_of_block, start_of_line
-Layout/BlockAlignment:
-  Exclude:
-    - 'lib/glossarist/sts/term_extractor.rb'
-    - 'spec/unit/sts/term_extractor_spec.rb'
-    - 'spec/unit/sts/term_mapper_spec.rb'
-
-# Offense count: 6
-# This cop supports safe autocorrection (--autocorrect).
-Layout/BlockEndNewline:
-  Exclude:
-    - 'lib/glossarist/sts/term_extractor.rb'
-    - 'spec/unit/sts/term_extractor_spec.rb'
-    - 'spec/unit/sts/term_mapper_spec.rb'
-
-# Offense count: 1
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: AllowMultipleStyles, EnforcedHashRocketStyle, EnforcedColonStyle, EnforcedLastArgumentHashStyle.
-# SupportedHashRocketStyles: key, separator, table
-# SupportedColonStyles: key, separator, table
-# SupportedLastArgumentHashStyles: always_inspect, always_ignore, ignore_implicit, ignore_explicit
-Layout/HashAlignment:
-  Exclude:
-    - 'lib/glossarist/sts/importer.rb'
-
-# Offense count: 12
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: Width, EnforcedStyleAlignWith, AllowedPatterns.
-# SupportedStylesAlignWith: start_of_line, relative_to_receiver
-Layout/IndentationWidth:
-  Exclude:
-    - 'lib/glossarist/sts/term_extractor.rb'
-    - 'spec/unit/sts/term_extractor_spec.rb'
-    - 'spec/unit/sts/term_mapper_spec.rb'
-
-# Offense count: 236
+# Offense count: 254
 # This cop supports safe autocorrection (--autocorrect).
 # Configuration parameters: Max, AllowHeredoc, AllowURI, AllowQualifiedName, URISchemes, AllowRBSInlineAnnotation, AllowCopDirectives, AllowedPatterns, SplitStrings.
 # URISchemes: http, https
 Layout/LineLength:
   Enabled: false
 
-# Offense count: 7
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: AllowInHeredoc.
-Layout/TrailingWhitespace:
-  Exclude:
-    - 'lib/glossarist/sts/import_result.rb'
-    - 'lib/glossarist/sts/importer.rb'
-    - 'lib/glossarist/sts/term_mapper.rb'
-
 # Offense count: 1
 # Configuration parameters: AllowedMethods.
 # AllowedMethods: enums
@@ -104,26 +33,12 @@ Lint/UnusedMethodArgument:
   Exclude:
     - 'lib/glossarist/dataset_validator.rb'
 
-# Offense count: 24
+# Offense count: 37
 # Configuration parameters: AllowedMethods, AllowedPatterns, CountRepeatedAttributes, Max.
 Metrics/AbcSize:
-  Exclude:
-    - 'lib/glossarist/cli/export_command.rb'
-    - 'lib/glossarist/cli/package_command.rb'
-    - 'lib/glossarist/cli/validate_command.rb'
-    - 'lib/glossarist/concept_manager.rb'
-    - 'lib/glossarist/gcr_metadata.rb'
-    - 'lib/glossarist/gcr_package.rb'
-    - 'lib/glossarist/reference_extractor.rb'
-    - 'lib/glossarist/reference_resolver.rb'
-    - 'lib/glossarist/resolution_adapter/local.rb'
-    - 'lib/glossarist/schema_migration.rb'
-    - 'lib/glossarist/transforms/concept_to_skos_transform.rb'
-    - 'lib/glossarist/transforms/concept_to_tbx_transform.rb'
-    - 'lib/glossarist/utilities/uuid.rb'
-    - 'spec/unit/concept_collector_spec.rb'
+  Enabled: false
 
-# Offense count: 19
+# Offense count: 24
 # Configuration parameters: AllowedMethods, AllowedPatterns, Max.
 Metrics/CyclomaticComplexity:
   Exclude:
@@ -132,6 +47,7 @@ Metrics/CyclomaticComplexity:
     - 'lib/glossarist/designation/expression.rb'
     - 'lib/glossarist/gcr_metadata.rb'
     - 'lib/glossarist/gcr_statistics.rb'
+    - 'lib/glossarist/gcr_validator.rb'
     - 'lib/glossarist/managed_concept.rb'
     - 'lib/glossarist/reference_extractor.rb'
     - 'lib/glossarist/reference_resolver.rb'
@@ -139,8 +55,9 @@ Metrics/CyclomaticComplexity:
     - 'lib/glossarist/schema_migration.rb'
     - 'lib/glossarist/transforms/concept_to_skos_transform.rb'
     - 'lib/glossarist/transforms/concept_to_tbx_transform.rb'
+    - 'lib/glossarist/validation/bibliography_index.rb'
 
-# Offense count: 47
+# Offense count: 48
 # Configuration parameters: CountComments, CountAsOne, AllowedMethods, AllowedPatterns.
 Metrics/MethodLength:
   Max: 42
@@ -150,19 +67,21 @@ Metrics/MethodLength:
 Metrics/ParameterLists:
   Max: 6
 
-# Offense count: 13
+# Offense count: 18
 # Configuration parameters: AllowedMethods, AllowedPatterns, Max.
 Metrics/PerceivedComplexity:
   Exclude:
     - 'lib/glossarist/concept_validator.rb'
     - 'lib/glossarist/designation/expression.rb'
     - 'lib/glossarist/gcr_metadata.rb'
+    - 'lib/glossarist/gcr_validator.rb'
     - 'lib/glossarist/reference_extractor.rb'
     - 'lib/glossarist/reference_resolver.rb'
     - 'lib/glossarist/resolution_adapter/local.rb'
     - 'lib/glossarist/schema_migration.rb'
     - 'lib/glossarist/transforms/concept_to_skos_transform.rb'
     - 'lib/glossarist/transforms/concept_to_tbx_transform.rb'
+    - 'lib/glossarist/validation/bibliography_index.rb'
 
 # Offense count: 6
 # Configuration parameters: MinNameLength, AllowNamesEndingInNumbers, AllowedNames, ForbiddenNames.
@@ -179,19 +98,6 @@ Naming/VariableNumber:
   Exclude:
     - 'spec/unit/rdf/skos_vocabulary_spec.rb'
 
-# Offense count: 9
-# This cop supports safe autocorrection (--autocorrect).
-# Configuration parameters: EnforcedStyle, ProceduralMethods, FunctionalMethods, AllowedMethods, AllowedPatterns, AllowBracesOnProceduralOneLiners, BracesRequiredMethods.
-# SupportedStyles: line_count_based, semantic, braces_for_chaining, always_braces
-# ProceduralMethods: benchmark, bm, bmbm, create, each_with_object, measure, new, realtime, tap, with_object
-# FunctionalMethods: let, let!, subject, watch
-# AllowedMethods: lambda, proc, it
-Style/BlockDelimiters:
-  Exclude:
-    - 'lib/glossarist/sts/term_extractor.rb'
-    - 'spec/unit/sts/term_extractor_spec.rb'
-    - 'spec/unit/sts/term_mapper_spec.rb'
-
 # Offense count: 6
 # This cop supports safe autocorrection (--autocorrect).
 # Configuration parameters: MaxUnannotatedPlaceholdersAllowed, Mode, AllowedMethods, AllowedPatterns.
@@ -199,12 +105,6 @@ Style/BlockDelimiters:
 Style/FormatStringToken:
   EnforcedStyle: unannotated
 
-# Offense count: 2
-# This cop supports safe autocorrection (--autocorrect).
-Style/MultilineIfModifier:
-  Exclude:
-    - 'lib/glossarist/sts/importer.rb'
-
 # Offense count: 1
 # Configuration parameters: AllowedClasses.
 Style/OneClassPerFile:

data/Gemfile

@@ -14,5 +14,3 @@ gem "rubocop"
 gem "rubocop-performance"
 gem "rubocop-rake"
 gem "rubocop-rspec"
-
-

data/README.adoc

@@ -626,12 +626,14 @@ skipped_count:: `Integer` — concepts skipped due to duplicates (strategy: skip
 
 === validate
 
-Validate a dataset directory or `.gcr` file for schema compliance.
+Validate a dataset directory or `.gcr` file for schema compliance, structural
+integrity, cross-reference resolution, and data quality.
 
 [,bash]
 ----
 glossarist validate PATH
 glossarist validate PATH --reference-path path/to/gcrs/
+glossarist validate PATH --strict
 ----
 
 Options:
@@ -657,6 +659,210 @@ result.errors   # => [...]
 result.warnings # => [...]
 ----
 
+== Validation System
+
+Glossarist provides a rule-based validation framework that checks dataset
+directories and GCR packages for structural, schema, reference, integrity,
+quality, and localization issues.
+
+=== Architecture
+
+The validation system uses the **rule-registry pattern** (Open/Closed
+Principle). Each check is a self-describing rule class that subclasses
+`Glossarist::Validation::Rules::Base`. New rules are added by subclassing and
+registering — no existing code is modified.
+
+```
+Glossarist::Validation
+├── Rules
+│   ├── Base                    # Abstract rule: code, category, severity, scope, check
+│   ├── Registry                # Global registry: register, all, for_category, for_scope
+│   ├── DatasetContext          # Lazy-loaded access to a directory dataset
+│   ├── GcrContext              # Lazy-loaded access to a .gcr package
+│   └── (26 rule classes)      # One file per rule
+├── ValidationIssue             # Single finding: severity, code, message, location, suggestion
+├── BibliographyIndex           # Index of bibliography anchors from sources + bibliography.yaml
+├── AssetIndex                  # Index of asset paths from images/ directory or GCR ZIP
+├── ConceptValidator            # Orchestrator: runs per-concept rules
+├── GcrValidator                # Orchestrator: runs GCR-level rules
+└── DatasetValidator            # Orchestrator: runs directory-level + collection rules
+```
+
+=== Rule Categories
+
+Rules are classified into six MECE (Mutually Exclusive, Collectively
+Exhaustive) categories:
+
+[cols="1,2"]
+|===
+|Category |What it checks
+
+|`structure` |File/directory layout, ZIP contents, required parts
+|`schema` |Field types, enum values, required fields, YAML syntax
+|`references` |Cross-references between concepts, bibliography, assets
+|`integrity` |Metadata vs. reality, filename vs. ID, UUID cross-references
+|`quality` |Empty content, missing preferred terms, duplicate terms
+|`localization` |Language coverage, orphaned/missing localization files
+|===
+
+=== Built-in Rules
+
+The following rules are registered by default. Each rule has a unique code
+(e.g. `GLS-001`), a severity (`error` or `warning`), and a scope (`:concept`
+for per-concept checks or `:collection` for dataset-wide checks).
+
+==== Structure Rules
+
+[cols="1,2,1,1"]
+|===
+|Code |Rule |Severity |Scope
+
+|GLS-001 |Concept ID is present |error |`:concept`
+|GLS-002 |At least one localization per concept |error |`:concept`
+|GLS-005 |Each localization has at least 1 term |error |`:concept`
+|GLS-020-YAML |bibliography.yaml is valid YAML |error |`:collection`
+|===
+
+==== Schema Rules
+
+[cols="1,2,1,1"]
+|===
+|Code |Rule |Severity |Scope
+
+|GLS-003 |Entry status is a valid enum value |error |`:concept`
+|GLS-201 |Concept status is a valid enum value |error |`:concept`
+|GLS-202/203 |Source type and status are valid enums |error |`:concept`
+|GLS-200 |Related concept type is valid |error |`:concept`
+|GLS-204 |Designation normative_status is valid |error |`:concept`
+|GLS-205 |Date type is a valid enum |warning |`:concept`
+|GLS-206 |Language code is exactly 3 lowercase letters |error |`:concept`
+|GLS-207 |Designation type maps to a known subclass |error |`:concept`
+|===
+
+==== Reference Rules
+
+[cols="1,2,1,1"]
+|===
+|Code |Rule |Severity |Scope
+
+|GLS-100 |`{{...}}` concept mentions resolve locally |warning |`:concept`
+|GLS-102 |`<<anchor>>` AsciiDoc xrefs resolve in bibliography index |warning |`:concept`
+|GLS-103-105 |Image references resolve in asset index |warning |`:concept`
+|GLS-110 |Related concept references resolve |warning |`:concept`
+|GLS-020 |Orphaned bibliography entries |warning |`:collection`
+|GLS-021 |Orphaned images |warning |`:collection`
+|GLS-112 |Supersedes/superseded_by symmetry check |warning |`:collection`
+|GLS-113 |No circular related-concept chains |error |`:collection`
+|===
+
+==== Integrity Rules
+
+[cols="1,2,1,1"]
+|===
+|Code |Rule |Severity |Scope
+
+|GLS-001-U |Concept IDs are unique |error |`:collection`
+|GLS-011 |Concept count matches metadata |error |`:collection`
+|GLS-012 |Language list matches actual languages |warning |`:collection`
+|GLS-013 |Language coverage per concept |warning |`:concept`
+|GLS-015 |Filename matches concept ID (GCR) |error |`:concept`
+|GLS-016 |Concept URI is set or template is applicable |warning |`:collection`
+|GLS-018 |Localized concept UUID cross-references resolve |error |`:concept`
+|GLS-019 |Orphaned localization files |warning |`:collection`
+|===
+
+==== Quality Rules
+
+[cols="1,2,1,1"]
+|===
+|Code |Rule |Severity |Scope
+
+|GLS-300 |Definition content is non-empty |warning |`:concept`
+|GLS-301 |At least one preferred designation per localization |warning |`:concept`
+|GLS-302 |No duplicate preferred terms within a language |warning |`:collection`
+|GLS-304 |Source citation is not empty |warning |`:concept`
+|GLS-306 |At least one authoritative source |warning |`:concept`
+|GLS-307 |Date values are parseable |warning |`:concept`
+|===
+
+=== Cross-Reference Validation
+
+The validation system checks that all references in concept content point to
+resources that actually exist:
+
+* **Bibliographic cross-references** — AsciiDoc `<<anchor>>` xrefs are checked
+  against a `BibliographyIndex` built from all `ConceptSource` entries and
+  optional `bibliography.yaml`.
+* **Image/asset references** — `image::path[]` references and model-level asset
+  paths (`NonVerbRep`, `GraphicalSymbol`) are checked against an `AssetIndex`
+  built from the `images/` directory or GCR ZIP entries.
+* **Inter-concept references** — `{{...}}` concept mentions are checked against
+  the concept collection for local references, and against registered GCR
+  packages for inter-set URN references.
+
+=== Validation Result
+
+`ValidationResult` holds the aggregated findings from all rules:
+
+[,ruby]
+----
+result = DatasetValidator.new.validate("path/to/dataset")
+result.valid?    # => true if no errors
+result.errors    # => Array of error strings
+result.warnings  # => Array of warning strings
+result.issues    # => Array of ValidationIssue objects (full detail)
+----
+
+Each `ValidationIssue` carries structured metadata:
+
+[,ruby]
+----
+issue = result.issues.first
+issue.severity   # => "error" or "warning"
+issue.code       # => "GLS-300"
+issue.message    # => "definition 1 has empty content"
+issue.location   # => "concepts/100.yaml/eng"
+issue.suggestion # => "Add definition text or remove the empty entry"
+issue.to_s       # => "[ERROR] [GLS-300] concepts/100.yaml/eng: definition 1 has empty content"
+----
+
+=== Adding Custom Rules
+
+New validation rules are added by subclassing `Base` and registering with the
+global `Registry`. This extends validation without modifying existing code:
+
+[,ruby]
+----
+class MyCustomRule < Glossarist::Validation::Rules::Base
+  def code = "CUSTOM-001"
+  def category = :quality
+  def severity = "warning"
+  def scope = :concept
+
+  def applicable?(context)
+    context.concept&.localizations&.any?
+  end
+
+  def check(context)
+    issues = []
+    context.concept.localizations.each do |l10n|
+      # ... your check logic ...
+      if some_condition
+        issues << issue("something is wrong",
+          location: context.file_name,
+          suggestion: "how to fix it")
+      end
+    end
+    issues
+  end
+end
+
+Glossarist::Validation::Rules::Registry.register(MyCustomRule)
+----
+
+Custom rules are automatically picked up by `DatasetValidator`, `GcrValidator`,
+and `ConceptValidator` on the next validation run.
+
 === upgrade
 
 Upgrade a dataset to the current schema version.

data/glossarist.gemspec

@@ -32,9 +32,9 @@ Gem::Specification.new do |spec|
   spec.require_paths = ["lib"]
 
   spec.add_dependency "lutaml-model", "~> 0.8.5"
-  spec.add_dependency "sts", "~> 0.5.6"
   spec.add_dependency "relaton", ">= 2.0.0", "< 3"
   spec.add_dependency "rubyzip", ">= 2.3", "< 3"
+  spec.add_dependency "sts", "~> 0.5.6"
   spec.add_dependency "tbx", "~> 0.1"
   spec.add_dependency "thor"
 end

data/lib/glossarist/asset_reference.rb

@@ -0,0 +1,16 @@
+# frozen_string_literal: true
+
+module Glossarist
+  class AssetReference
+    attr_reader :path, :location
+
+    def initialize(path:, location: nil)
+      @path = path
+      @location = location
+    end
+
+    def dedup_key
+      path
+    end
+  end
+end

data/lib/glossarist/bibliographic_reference.rb

@@ -0,0 +1,16 @@
+# frozen_string_literal: true
+
+module Glossarist
+  class BibliographicReference
+    attr_reader :anchor, :location
+
+    def initialize(anchor:, location: nil)
+      @anchor = anchor
+      @location = location
+    end
+
+    def dedup_key
+      anchor
+    end
+  end
+end

data/lib/glossarist/concept_enricher.rb

@@ -8,6 +8,7 @@ module Glossarist
       concepts.each do |mc|
         mc.localizations.each do |l10n|
           refs = extractor.extract_from_localized_concept(l10n)
+            .grep(ConceptReference)
           next if refs.empty?
 
           existing = l10n.data.references || []

data/lib/glossarist/concept_reference.rb

@@ -41,5 +41,9 @@ module Glossarist
       h["ref_type"] = ref_type if ref_type
       h.compact
     end
+
+    def dedup_key
+      concept_id ? [source, concept_id] : [source, concept_id, term]
+    end
   end
 end

data/lib/glossarist/concept_validator.rb

@@ -2,9 +2,6 @@
 
 module Glossarist
   class ConceptValidator
-    LANG_CODES = Glossarist::LANG_CODES
-    VALID_ENTRY_STATUSES = %w[valid superseded withdrawn draft].freeze
-
     attr_reader :path, :errors, :warnings
 
     def initialize(path)
@@ -14,23 +11,46 @@ module Glossarist
     end
 
     def validate_all
-      seen_ids = {}
+      result = ValidationResult.new
+      context = Validation::Rules::DatasetContext.new(@path)
+      concept_rules = Validation::Rules::Registry.for_scope(:concept)
       file_idx = 0
 
       ConceptCollector.each_concept(@path) do |concept|
         fname = concept_file_name(concept, file_idx)
-        validate_concept(concept, fname, seen_ids)
+        concept_context = Validation::Rules::ConceptContext.new(
+          concept, file_name: fname, collection_context: context
+        )
+
+        concept_rules.each do |rule|
+          next unless rule.applicable?(concept_context)
+
+          rule.check(concept_context).each { |i| result.add_issue(i) }
+        end
+
         file_idx += 1
       end
 
       if file_idx.zero?
         yaml_files = find_yaml_files
         if yaml_files.any?
-          @errors << "YAML files found but no parseable concepts"
+          result.add_error("YAML files found but no parseable concepts")
         end
       end
 
-      ValidationResult.new(errors: @errors, warnings: @warnings)
+      # Run collection-level rules
+      collection_rules = Validation::Rules::Registry.for_scope(:collection)
+      collection_rules.each do |rule|
+        next unless rule.applicable?(context)
+
+        rule.check(context).each { |i| result.add_issue(i) }
+      end
+
+      # Sync legacy arrays for backward compatibility
+      @errors = result.errors
+      @warnings = result.warnings
+
+      result
     end
 
     private
@@ -48,54 +68,5 @@ module Glossarist
       id = concept.data&.id
       id ? "concept-#{id}.yaml" : "concept-#{idx}.yaml"
     end
-
-    def validate_concept(concept, fname, seen_ids)
-      validate_id(concept, fname, seen_ids)
-      validate_localizations(concept, fname)
-      validate_entry_statuses(concept, fname)
-    end
-
-    def validate_id(concept, fname, seen_ids)
-      id = concept.data&.id
-      unless id
-        @errors << "#{fname}: missing concept id"
-        return
-      end
-
-      id_str = id.to_s
-      if seen_ids[id_str]
-        @errors << "#{fname}: duplicate id '#{id_str}' (first seen in #{seen_ids[id_str]})"
-      else
-        seen_ids[id_str] = fname
-      end
-    end
-
-    def validate_localizations(concept, fname)
-      l10ns = concept.localizations&.values || []
-      if l10ns.empty?
-        @errors << "#{fname}: no localizations found"
-        return
-      end
-
-      l10ns.each do |l10n|
-        lang = l10n.language_code || "unknown"
-        terms = l10n.data&.terms
-        unless terms.is_a?(Array) && terms.any?
-          @errors << "#{fname}/#{lang}: must have at least 1 term"
-        end
-      end
-    end
-
-    def validate_entry_statuses(concept, fname)
-      (concept.localizations&.values || []).each do |l10n|
-        lang = l10n.language_code || "unknown"
-        status = l10n.data&.entry_status
-        next unless status
-
-        unless VALID_ENTRY_STATUSES.include?(status)
-          @errors << "#{fname}/#{lang}: invalid entry_status '#{status}' (expected one of: #{VALID_ENTRY_STATUSES.join(', ')})"
-        end
-      end
-    end
   end
 end