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data/LICENSE ADDED
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+ GNU GENERAL PUBLIC LICENSE
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+ Version 3, 29 June 2007
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+ For more information on this, and how to apply and follow the GNU GPL, see
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+ The GNU General Public License does not permit incorporating your program
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+ the library. If this is what you want to do, use the GNU Lesser General
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+ <http://www.gnu.org/philosophy/why-not-lgpl.html>.
@@ -0,0 +1,2 @@
1
+ ghrub
2
+ =====
@@ -0,0 +1,13 @@
1
+ require 'rake/testtask'
2
+ require 'yard'
3
+
4
+ Rake::TestTask.new do |t|
5
+ t.libs << 'test'
6
+ end
7
+
8
+ YARD::Rake::YardocTask.new do |t|
9
+ t.files = ['lib/**/*.rb', '-']
10
+ end
11
+
12
+ #desc "Run tests"
13
+ #task :default => :test
@@ -0,0 +1,33 @@
1
+ # -*- encoding: utf-8 -*-
2
+ $:.push File.expand_path("../lib", __FILE__)
3
+ require "ghrub/version"
4
+
5
+ Gem::Specification.new do |s|
6
+ s.name = 'ghrub'
7
+ s.version = Ghrub::VERSION
8
+ s.date = '2013-11-25'
9
+ s.platform = Gem::Platform::RUBY
10
+
11
+ s.summary = "Provides some useful functions for systems biology field."
12
+ s.description = "Graph database ruby library for systems biology data"
13
+ s.authors = ["Natapol Pornputtapong"]
14
+ s.email = 'natapol.por@gmail.com'
15
+
16
+ s.homepage = 'http://rubygems.org/gems/ghrub'
17
+ s.license = 'GPL'
18
+
19
+ # s.rubyforge_project = "neography"
20
+
21
+ s.files = `git ls-files`.split("\n")
22
+ s.test_files = `git ls-files -- {test,spec,features}/*`.split("\n")
23
+ s.executables = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
24
+ s.require_paths = ["lib"]
25
+
26
+ s.add_dependency "sylfy", ">= 0.0.2"
27
+ s.add_dependency "neography", ">= 1.2.3"
28
+
29
+
30
+ # s.add_development_dependency "rspec", ">= 2.11"
31
+ # s.add_dependency "httpclient", ">= 2.3.3"
32
+
33
+ end
@@ -0,0 +1,24 @@
1
+ #
2
+ # Systems biology library for Ruby (Sylfy)
3
+ # Copyright (C) 2012-2013
4
+ #
5
+ # author: Natapol Pornputtapong <natapol@chalmers.se>
6
+ #
7
+ # Documentation: Natapol Pornputtapong (RDoc'd and embellished by William Webber)
8
+ #
9
+
10
+ # raise "Please, use ruby 1.9.0 or later." if RUBY_VERSION < "1.9.0"
11
+
12
+
13
+
14
+ $: << File.join(File.expand_path(File.dirname(__FILE__)))
15
+
16
+ require 'csv'
17
+
18
+ require 'sylfy'
19
+ require 'neography'
20
+
21
+ module Ghrub
22
+
23
+
24
+ end
@@ -0,0 +1,12 @@
1
+ #
2
+ # UniSysDB library in Ruby
3
+ # Copyright (C) 2012
4
+ #
5
+ # author: Natapol Pornputtapong <natapol.por@gmail.com>
6
+ #
7
+ # Documentation: Natapol Pornputtapong (RDoc'd and embellished by William Webber)
8
+ #
9
+
10
+ module Ghrub
11
+ VERSION = "0.0.1"
12
+ end
metadata ADDED
@@ -0,0 +1,78 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: ghrub
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.0.1
5
+ platform: ruby
6
+ authors:
7
+ - Natapol Pornputtapong
8
+ autorequire:
9
+ bindir: bin
10
+ cert_chain: []
11
+ date: 2013-11-25 00:00:00.000000000 Z
12
+ dependencies:
13
+ - !ruby/object:Gem::Dependency
14
+ name: sylfy
15
+ requirement: !ruby/object:Gem::Requirement
16
+ requirements:
17
+ - - '>='
18
+ - !ruby/object:Gem::Version
19
+ version: 0.0.2
20
+ type: :runtime
21
+ prerelease: false
22
+ version_requirements: !ruby/object:Gem::Requirement
23
+ requirements:
24
+ - - '>='
25
+ - !ruby/object:Gem::Version
26
+ version: 0.0.2
27
+ - !ruby/object:Gem::Dependency
28
+ name: neography
29
+ requirement: !ruby/object:Gem::Requirement
30
+ requirements:
31
+ - - '>='
32
+ - !ruby/object:Gem::Version
33
+ version: 1.2.3
34
+ type: :runtime
35
+ prerelease: false
36
+ version_requirements: !ruby/object:Gem::Requirement
37
+ requirements:
38
+ - - '>='
39
+ - !ruby/object:Gem::Version
40
+ version: 1.2.3
41
+ description: Graph database ruby library for systems biology data
42
+ email: natapol.por@gmail.com
43
+ executables: []
44
+ extensions: []
45
+ extra_rdoc_files: []
46
+ files:
47
+ - LICENSE
48
+ - README.md
49
+ - Rakefile
50
+ - ghrub.gemspec
51
+ - lib/ghrub.rb
52
+ - lib/ghrub/version.rb
53
+ homepage: http://rubygems.org/gems/ghrub
54
+ licenses:
55
+ - GPL
56
+ metadata: {}
57
+ post_install_message:
58
+ rdoc_options: []
59
+ require_paths:
60
+ - lib
61
+ required_ruby_version: !ruby/object:Gem::Requirement
62
+ requirements:
63
+ - - '>='
64
+ - !ruby/object:Gem::Version
65
+ version: '0'
66
+ required_rubygems_version: !ruby/object:Gem::Requirement
67
+ requirements:
68
+ - - '>='
69
+ - !ruby/object:Gem::Version
70
+ version: '0'
71
+ requirements: []
72
+ rubyforge_project:
73
+ rubygems_version: 2.0.6
74
+ signing_key:
75
+ specification_version: 4
76
+ summary: Provides some useful functions for systems biology field.
77
+ test_files: []
78
+ has_rdoc: