gfa 0.1.1 → 0.2.0

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Files changed (34) hide show
  1. checksums.yaml +5 -5
  2. data/Gemfile +9 -0
  3. data/LICENSE +201 -0
  4. data/README.md +108 -0
  5. data/Rakefile +17 -0
  6. data/lib/gfa/common.rb +39 -0
  7. data/lib/gfa/field/char.rb +9 -0
  8. data/lib/gfa/field/float.rb +9 -0
  9. data/lib/gfa/field/hex.rb +9 -0
  10. data/lib/gfa/field/json.rb +9 -0
  11. data/lib/gfa/field/numarray.rb +24 -0
  12. data/lib/gfa/field/sigint.rb +9 -0
  13. data/lib/gfa/field/string.rb +9 -0
  14. data/lib/gfa/field.rb +47 -0
  15. data/lib/gfa/generator.rb +35 -0
  16. data/lib/gfa/graph.rb +99 -0
  17. data/lib/gfa/parser.rb +46 -0
  18. data/lib/gfa/record/comment.rb +10 -0
  19. data/lib/gfa/record/containment.rb +29 -0
  20. data/lib/gfa/record/header.rb +12 -0
  21. data/lib/gfa/record/jump.rb +45 -0
  22. data/lib/gfa/record/link.rb +49 -0
  23. data/lib/gfa/record/path.rb +19 -0
  24. data/lib/gfa/record/segment.rb +25 -0
  25. data/lib/gfa/record/walk.rb +20 -0
  26. data/lib/gfa/record.rb +96 -0
  27. data/lib/gfa/version.rb +7 -0
  28. data/lib/gfa.rb +4 -0
  29. data/test/common_test.rb +34 -0
  30. data/test/field_test.rb +50 -0
  31. data/test/parser_test.rb +47 -0
  32. data/test/record_test.rb +73 -0
  33. data/test/test_helper.rb +6 -0
  34. metadata +56 -18
metadata CHANGED
@@ -1,84 +1,122 @@
1
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  --- !ruby/object:Gem::Specification
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  name: gfa
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  version: !ruby/object:Gem::Version
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- version: 0.1.1
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+ version: 0.2.0
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  platform: ruby
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  authors:
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  - Luis M. Rodriguez-R
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- autorequire:
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+ autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2016-03-25 00:00:00.000000000 Z
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+ date: 2023-02-22 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rgl
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ~>
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+ - - "~>"
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  - !ruby/object:Gem::Version
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  version: '0.5'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ~>
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+ - - "~>"
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  - !ruby/object:Gem::Version
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  version: '0.5'
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  - !ruby/object:Gem::Dependency
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  name: rake
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - '>='
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - '>='
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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  name: test-unit
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - '>='
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :development
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - '>='
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  description: GFA is a graph representation of fragment assemblies
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  email: lmrodriguezr@gmail.com
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  executables: []
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  extensions: []
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- extra_rdoc_files: []
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- files: []
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+ extra_rdoc_files:
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+ - README.md
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+ files:
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+ - Gemfile
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+ - LICENSE
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+ - README.md
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+ - Rakefile
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+ - lib/gfa.rb
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+ - lib/gfa/common.rb
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+ - lib/gfa/field.rb
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+ - lib/gfa/field/char.rb
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+ - lib/gfa/field/float.rb
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+ - lib/gfa/field/hex.rb
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+ - lib/gfa/field/json.rb
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+ - lib/gfa/field/numarray.rb
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+ - lib/gfa/field/sigint.rb
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+ - lib/gfa/field/string.rb
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+ - lib/gfa/generator.rb
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+ - lib/gfa/graph.rb
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+ - lib/gfa/parser.rb
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+ - lib/gfa/record.rb
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+ - lib/gfa/record/comment.rb
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+ - lib/gfa/record/containment.rb
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+ - lib/gfa/record/header.rb
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+ - lib/gfa/record/jump.rb
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+ - lib/gfa/record/link.rb
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+ - lib/gfa/record/path.rb
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+ - lib/gfa/record/segment.rb
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+ - lib/gfa/record/walk.rb
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+ - lib/gfa/version.rb
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+ - test/common_test.rb
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+ - test/field_test.rb
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+ - test/parser_test.rb
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+ - test/record_test.rb
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+ - test/test_helper.rb
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  homepage: https://github.com/lmrodriguezr/gfa
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  licenses: []
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  metadata: {}
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- post_install_message:
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- rdoc_options: []
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+ post_install_message:
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+ rdoc_options:
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+ - lib
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+ - README.md
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+ - "--main"
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+ - README.md
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+ - "--title"
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+ - Graphical Fragment Assembly (GFA) for Ruby
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  require_paths:
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  - lib
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  required_ruby_version: !ruby/object:Gem::Requirement
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  requirements:
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- - - '>='
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements:
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- - - '>='
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+ - - ">="
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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- rubyforge_project:
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- rubygems_version: 2.0.14
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- signing_key:
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+ rubygems_version: 3.2.3
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+ signing_key:
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  specification_version: 4
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  summary: Graphical Fragment Assembly (GFA) for Ruby
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  test_files: []