genevalidatorapp 1.5.3 → 1.5.4

checksums.yaml

@@ -1,7 +1,7 @@
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+  data.tar.gz: 1c35fb396c2c5a0a059d265944c6e9299e8af259
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data/README.md

@@ -16,7 +16,7 @@ This is a online web application for [GeneValidator](https://github.com/wurmlab/
 GeneValidator helps in identifing problems with gene predictions and provides useful information extracted from analysing orthologs in BLAST databases. The results produced can be used by biocurators and researchers who need accurate gene predictions.
 
 If you use GeneValidator in your work, please cite us as follows:
-> "Dragan M<sup>&Dagger;</sup>, Moghul MI<sup>&Dagger;</sup>, Priyam A, Bustos C & Wurm Y (<em>in prep.</em>) GeneValidator: identify problematic gene predictions"
+> [Dragan M<sup>&Dagger;</sup>, Moghul MI<sup>&Dagger;</sup>, Priyam A, Bustos C & Wurm Y. 2016. GeneValidator: identify problems with protein-coding gene predictions. <em>Bioinformatics</em>, doi: 10.1093/bioinformatics/btw015](http://bioinformatics.oxfordjournals.org/content/early/2016/01/18/bioinformatics.btw015).
 
 
 
@@ -28,7 +28,7 @@ If you use GeneValidator in your work, please cite us as follows:
 ### Installation Requirements
 * Ruby (>= 2.0.0)
 * NCBI BLAST+ (>= 2.2.30+) (download [here](http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download)).
-* MAFFT installation (download [here](http://mafft.cbrc.jp/alignment/software/)).
+* MAFFT installation (>=7.273) (download [here](http://mafft.cbrc.jp/alignment/software/)).
 
 Please see [here](https://gist.github.com/IsmailM/b783e8a06565197084e6) for more help with installing the prerequisites.
 
@@ -126,6 +126,12 @@ Examples:
 ```
 
 
+## Using Docker
+```bash
+# With protein database files inside a folder named db
+docker run --rm -ti -p 4567:4567 -v $(pwd)/db:/db wurmlab/genevalidator
+```
+
 <hr>
 
 This program was developed at [Wurm Lab](https://wurmlab.github.io), [QMUL](http://sbcs.qmul.ac.uk) with the support of a BBSRC grant.

data/bin/genevalidatorapp

@@ -34,6 +34,10 @@ BANNER
        'Use the given configuration file',
        argument: true
 
+    on 'g', 'gv_public_dir=',
+       'The public directory that is served to the web application.',
+       argument: true
+
     on 'b', 'bin=',
        'Load BLAST+ and/or MAFFT binaries from this directory',
        argument: true,
@@ -111,59 +115,58 @@ BANNER
       # error scenarios either when creating a new GeneValidatorApp (first
       # time or later), or updating config values using -s CLI option.
 
-      rescue GeneValidatorApp::CONFIG_FILE_ERROR,
-             GeneValidatorApp::BLAST_DATABASE_ERROR => e
+      rescue GeneValidatorApp::CONFIG_FILE_ERROR => e
 
         puts e
         exit!
 
-      rescue GeneValidatorApp::BIN_DIR_NOT_FOUND => e
+      rescue GeneValidatorApp::NUM_THREADS_INCORRECT => e
 
         puts e
 
-        unless bin?
+        unless num_threads?
           puts 'You can set the correct value by running:'
           puts
-          puts '  genevalidatorapp -s -b <value>'
+          puts '  genevalidatorapp -s -n <value>'
           puts
         end
 
         exit!
 
-      rescue GeneValidatorApp::DATABASE_DIR_NOT_FOUND => e
+      rescue GeneValidatorApp::BIN_DIR_NOT_FOUND => e
 
         puts e
 
-        unless database_dir?
+        unless bin?
           puts 'You can set the correct value by running:'
           puts
-          puts '  genevalidatorapp -s -d <value>'
+          puts '  genevalidatorapp -s -b <value>'
           puts
         end
 
         exit!
 
-      rescue GeneValidatorApp::NUM_THREADS_INCORRECT => e
+      rescue GeneValidatorApp::EXTENSION_FILE_NOT_FOUND => e
 
         puts e
 
-        unless num_threads?
+        unless require?
           puts 'You can set the correct value by running:'
           puts
-          puts '  genevalidatorapp -s -n <value>'
+          puts '  genevalidatorapp -s -r <value>'
           puts
         end
 
         exit!
 
-      rescue GeneValidatorApp::EXTENSION_FILE_NOT_FOUND => e
+      rescue GeneValidatorApp::DATABASE_DIR_NOT_FOUND => e
 
         puts e
 
-        unless require?
+        unless database_dir?
           puts 'You can set the correct value by running:'
           puts
-          puts '  genevalidatorapp -s -r <value>'
+          puts '  genevalidatorapp -s -d <value>'
           puts
         end
 
@@ -200,6 +203,7 @@ MSG
           redo
         end
 
+
       rescue GeneValidatorApp::DATABASE_DIR_NOT_SET => e
 
         # Show original error message.
@@ -225,15 +229,20 @@ MSG
         fetch_option(:database_dir).value = response
         redo
 
-      rescue GeneValidatorApp::NO_BLAST_DATABASE_FOUND => e
+      rescue GeneValidatorApp::NO_BLAST_DATABASE_FOUND,
+             GeneValidatorApp::NO_PROTEIN_BLAST_DATABASE_FOUND => e
         unless list_databases?
-
           # Print error raised.
           puts
           puts e
-
+          exit!
         end
 
+      rescue GeneValidatorApp::BLAST_DATABASE_ERROR => e
+
+        puts e
+        exit!
+
       rescue => e
         # This will catch any unhandled error and some very special errors.
         # Ideally we will never hit this block. If we do, there's a bug in
@@ -250,7 +259,7 @@ https://github.com/wurmlab/genevalidatorapp/issues
 Error:
 #{e.backtrace.unshift(e.message).join("\n")}
 MSG
-        exit
+        exit!
       end
 
       if list_databases?

data/docker/Dockerfile

@@ -0,0 +1,21 @@
+# GeneValidator
+#
+# A web wrapper for GeneValidator (identify problems with predicted genes)
+#
+# If you use GeneValidator in your work, please cite us as follows:
+#
+#  Dragan M‡, Moghul MI‡, Priyam A, Bustos C & Wurm Y. 2016.
+#  GeneValidator: identify problems with protein-coding gene predictions.
+#  Bioinformatics, doi: 10.1093/bioinformatics/btw015.
+#
+# VERSION 1.0.0
+
+FROM ubuntu:16.04
+MAINTAINER Bruno Vieira <mail@bmpvieira.com>
+
+LABEL Description="Identify problems with protein-coding gene predictions http://genevalidator.sbcs.qmul.ac.uk" Version="1.0.0"
+
+RUN apt-get update
+RUN apt-get install -y build-essential ruby ruby-dev ncbi-blast+ mafft zlib1g-dev libgsl0-dev
+RUN gem install genevalidatorapp
+CMD genevalidatorapp -d /db

data/lib/genevalidatorapp.rb

@@ -38,9 +38,7 @@ module GeneValidatorApp
       init_binaries
       init_database
 
-      check_dirs
-      init_gv_tempdir
-      init_public_dir
+      init_dirs
 
       load_extension
       check_num_threads
@@ -77,8 +75,9 @@ module GeneValidatorApp
       puts
       puts '** Thank you for using GeneValidatorApp :).'
       puts '   Please cite: '
-      puts '        Dragan M., Moghul M.I., Priyam A., Wurm Y (in prep).'
-      puts '        GeneValidator: identify problematic gene predictions.'
+      puts '        Dragan M, Moghul MI, Priyam A, Bustos C, Wurm Y. 2016.'
+      puts '        GeneValidator: identify problems with protein-coding gene'
+      puts '        predictions. Bioinformatics, doi: 10.1093/bioinformatics/btw015.'
     end
 
     # Rack-interface.
@@ -91,23 +90,17 @@ module GeneValidatorApp
 
     private
 
-    def check_dirs
-      config[:gv_app_dir] = File.expand_path(config[:gv_app_dir])
-      unique_run_id       = 'GV_' + "#{Time.now.strftime('%Y%m%d-%H-%M-%S')}"
-      @public_dir         = File.join(config[:gv_app_dir], unique_run_id)
-      FileUtils.mkdir_p(File.join(@public_dir, 'GeneValidator'))
-    end
-
-    # Creates a Temp directory (starting with 'GeneValidator_') each time
-    #   GVapp is started. Within this Temp folder, sub directories are created
-    #   in which GeneValidator is run.
-    def init_gv_tempdir
-      @temp_dir = Dir.mktmpdir('GeneValidator_')
+    def init_dirs
+      config[:gv_public_dir] = File.expand_path(config[:gv_public_dir])
+      unique_start_id        = 'GV_' + "#{Time.now.strftime('%Y%m%d-%H-%M-%S')}"
+      @public_dir = File.join(config[:gv_public_dir], unique_start_id)
+      init_public_dir
     end
 
-    # Copy the public folder (in the app root) to the gv_app_dir location - this
-    #   gv_app_dir is then used by the app to serve all dependencies...
+    # Create the Public Dir and copy files from gem root - this public dir
+    #   is served by the app is accessible at URL/...
     def init_public_dir
+      FileUtils.mkdir_p(File.join(@public_dir, 'GeneValidator'))
       root_web_files = File.join(GeneValidatorApp.root, 'public/web_files')
       root_gv        = File.join(GeneValidatorApp.root, 'public/GeneValidator')
       FileUtils.cp_r(root_web_files, @public_dir)
@@ -151,12 +144,16 @@ module GeneValidatorApp
     end
 
     def assert_blast_databases_present_in_database_dir
-      cmd = "blastdbcmd -recursive -list #{config[:database_dir]}"
+      cmd = "blastdbcmd -recursive -list '#{config[:database_dir]}'"
       out = `#{cmd}`
       errpat = /BLAST Database error/
       fail NO_BLAST_DATABASE_FOUND, config[:database_dir] if out.empty?
       fail BLAST_DATABASE_ERROR, cmd, out if out.match(errpat) ||
                                              !$CHILD_STATUS.success?
+      type = []
+      out.lines.each { |l| type << l.split[1] }
+      return if type.include? 'Protein'
+      fail NO_PROTEIN_BLAST_DATABASE_FOUND, config[:database_dir]
     end
 
     def check_num_threads
@@ -181,7 +178,7 @@ module GeneValidatorApp
 
     def init_bins
       bins = []
-      config[:bin].each do |bin|
+      Array(config[:bin]).each do |bin|
         bins << File.expand_path(bin)
         unless File.exist?(bin) && File.directory?(bin)
           fail BIN_DIR_NOT_FOUND, config[:bin]
@@ -210,12 +207,9 @@ module GeneValidatorApp
 
     # Check and warn user if host is 0.0.0.0 (default).
     def check_host
-      # rubocop:disable Style/GuardClause
-      if config[:host] == '0.0.0.0'
-        logger.warn 'Will listen on all interfaces (0.0.0.0).' \
-                    ' Consider using 127.0.0.1 (--host option).'
-      end
-      # rubocop:enable Style/GuardClause
+      return unless config[:host] == '0.0.0.0'
+      logger.warn 'Will listen on all interfaces (0.0.0.0).' \
+                  ' Consider using 127.0.0.1 (--host option).'
     end
 
     def server_url

data/lib/genevalidatorapp/config.rb

@@ -75,8 +75,8 @@ module GeneValidatorApp
         :num_threads    => 1,
         :port           => 4567,
         :host           => '0.0.0.0',
-        :gv_app_dir     => '~/.genevalidatorapp/',
-        :max_characters => 'undefined'
+        :gv_public_dir  => File.join(Dir.home, '.genevalidatorapp/'),
+        :max_characters => 'undefined',
       }
     end
 

data/lib/genevalidatorapp/exceptions.rb

@@ -29,6 +29,14 @@ MSG
     end
   end
 
+  ## NUM THREADS ##
+  # Raised if num_threads set by the user is incorrect.
+  class NUM_THREADS_INCORRECT < StandardError
+    def to_s
+      'Number of threads should be a number greater than or equal to 1.'
+    end
+  end
+
   ## ENOENT ##
 
   # Name borrowed from standard Errno::ENOENT, this class serves as a template
@@ -59,13 +67,6 @@ MSG
     end
   end
 
-  # Raised if database dir set, but does not exist.
-  class DATABASE_DIR_NOT_FOUND < ENOENT
-    def initialize(ent)
-      super 'database dir', ent
-    end
-  end
-
   # Raised if extension file set, but does not exist.
   class EXTENSION_FILE_NOT_FOUND < ENOENT
     def initialize(ent)
@@ -73,12 +74,10 @@ MSG
     end
   end
 
-  ## NUM THREADS ##
-
-  # Raised if num_threads set by the user is incorrect.
-  class NUM_THREADS_INCORRECT < StandardError
-    def to_s
-      'Number of threads should be a number greater than or equal to 1.'
+  # Raised if database dir set, but does not exist.
+  class DATABASE_DIR_NOT_FOUND < ENOENT
+    def initialize(ent)
+      super 'database dir', ent
     end
   end
 
@@ -139,6 +138,19 @@ MSG
     end
   end
 
+  # Raised if no protein BLAST+ database was found in database_dir.
+  class NO_PROTEIN_BLAST_DATABASE_FOUND < StandardError
+    def initialize(database_dir)
+      @database_dir = database_dir
+    end
+
+    attr_reader :database_dir
+
+    def to_s
+      "Could not find any Protein BLAST+ databases in: #{database_dir}."
+    end
+  end
+
   # Raised if there was an error determining BLAST+ databases in database_dir.
   class BLAST_DATABASE_ERROR < StandardError
     def initialize(cmd, out)

data/lib/genevalidatorapp/genevalidator.rb

@@ -27,14 +27,12 @@ module GeneValidatorApp
 
       def_delegators GeneValidatorApp, :config, :logger, :public_dir
 
-      attr_reader :gv_dir, :tmp_gv_dir, :input_file, :xml_file, :raw_seq,
-                  :unique_id, :params
+      attr_reader :gv_dir, :input_file, :xml_file, :raw_seq, :unique_id, :params
 
       # Setting the scene
       def init(url, params)
         create_unique_id
-        create_subdir_in_main_tmpdir
-        create_soft_link_from_tmpdir_to_gv_dir
+        create_run_dir
         @params = params
         validate_params
         obtain_db_path
@@ -42,8 +40,7 @@ module GeneValidatorApp
         @url = produce_result_url_link(url)
       end
 
-      # Run BLAST(X/P), get_raw_sequence and genevalidator
-      #  Returns html for just the table or a link to the page produced by GV
+      # Runs genevalidator & Returns parsed JSON, or link to JSON/results file
       def run
         write_seq_to_file
         run_genevalidator
@@ -57,32 +54,26 @@ module GeneValidatorApp
       # Creates a unique run ID (based on time),
       def create_unique_id
         @unique_id = Time.new.strftime('%Y-%m-%d_%H-%M-%S_%L-%N')
-        @gv_tmpdir = File.join(GeneValidatorApp.temp_dir, unique_id)
+        @run_dir   = File.join(GeneValidatorApp.public_dir, 'GeneValidator',
+                               @unique_id)
         ensure_unique_id
       end
 
       # Ensures that the Unique id is unique (if a sub dir is present in the
       #  temp dir with the unique id, it simply creates a new one)
       def ensure_unique_id
-        while File.exist?(@gv_tmpdir)
+        while File.exist?(@run_dir)
           @unique_id = create_unique_id
-          @gv_tmpdir = File.join(GeneValidatorApp.temp_dir, unique_id)
+          @run_dir   = File.join(GeneValidatorApp.public_dir, 'GeneValidator',
+                                 @unique_id)
         end
         logger.debug("Unique ID = #{@unique_id}")
       end
 
       # Create a sub_dir in the Tempdir (name is based on unique id)
-      def create_subdir_in_main_tmpdir
-        logger.debug("GV Tempdir = #{@gv_tmpdir}")
-        FileUtils.mkdir_p(@gv_tmpdir)
-      end
-
-      # Create the Tmp Dir and the create a soft link to it.
-      def create_soft_link_from_tmpdir_to_gv_dir
-        @gv_dir = File.join(GeneValidatorApp.public_dir, 'GeneValidator',
-                            @unique_id)
-        logger.debug("Local GV dir = #{@gv_dir}")
-        FileUtils.ln_s "#{@gv_tmpdir}", "#{@gv_dir}"
+      def create_run_dir
+        logger.debug("GV Tempdir = #{@run_dir}")
+        FileUtils.mkdir_p(@run_dir)
       end
 
       # Validates the paramaters provided via the app.
@@ -127,13 +118,11 @@ module GeneValidatorApp
 
       # Writes the input sequences to a file with the sub_dir in the temp_dir
       def write_seq_to_file
-        @input_fasta_file = File.join(@gv_tmpdir, 'input_file.fa')
-        logger.debug("Writing input seqs to: '#{@input_fasta_file}'")
+        @input_file = File.join(@run_dir, 'input_file.fa')
+        logger.debug("Writing input seqs to: '#{@input_file}'")
         ensure_unix_line_ending
         ensure_fasta_valid
-        File.open(@input_fasta_file, 'w+') do |f|
-          f.write(@params[:seq])
-        end
+        File.open(@input_file, 'w+') { |f| f.write(@params[:seq]) }
         assert_input_file_present
       end
 
@@ -163,12 +152,10 @@ module GeneValidatorApp
         @params[:seq] = sequence
       end
 
-      # Asserts whether the input file has been generated and whether it is
-      #  empty
+      # Asserts that the input file has been generated and is not empty
       def assert_input_file_present
-        unless File.exist?(@input_fasta_file) || File.zero?(@input_fasta_file)
-          fail 'GeneValidatorApp was unable to create the input file.'
-        end
+        return if File.exist?(@input_file) && !File.zero?(@input_file)
+        fail 'GeneValidatorApp was unable to create the input file.'
       end
 
       # Returns 'blastp' if sequence contains amino acids or returns 'blastx'
@@ -191,21 +178,21 @@ module GeneValidatorApp
       end
 
       def run_gv
-        cmd = "genevalidator -v '#{@params[:validations].join(', ')}'" \
-              " -d #{@db} -n #{config[:num_threads]} #{@input_fasta_file}"
+        cmd = "genevalidator -v '#{@params[:validations].join(',')}'" \
+              " -d #{@db} -n #{config[:num_threads]} #{@input_file}"
         logger.debug("GV command: $ #{cmd}")
         log_file = (logger.debug?) ? '' : "> #{@gv_log_file} 2>&1"
         `#{cmd} #{log_file}`
       end
 
       def create_gv_log_file
-        @gv_log_file = File.join(@gv_tmpdir, 'log_file.txt')
+        @gv_log_file = File.join(@run_dir, 'log_file.txt')
         logger.debug("Log file: #{@gv_log_file}")
       end
 
       # Assets whether the results file is produced by GeneValidator.
       def assert_json_output_file_produced
-        @json_file = File.join(@gv_dir, 'input_file.fa.json')
+        @json_file = File.join(@run_dir, 'input_file.fa.json')
         return if File.exist?(@json_file)
         fail 'GeneValidator did not produce the required output file.'
       end
@@ -228,11 +215,11 @@ module GeneValidatorApp
       end
 
       def output_json_file_path
-        "#{@input_fasta_file}.json"
+        "#{@input_file}.json"
       end
 
       def copy_json_folder
-        json_dir = File.join("#{@input_fasta_file}.html", 'files/json', '/.')
+        json_dir = File.join("#{@input_file}.html", 'files/json', '/.')
         web_dir_json = File.join(public_dir, 'web_files/json')
         logger.debug("Moving JSON files from #{json_dir} to #{web_dir_json}")
         FileUtils.cp_r(json_dir, web_dir_json)

data/lib/genevalidatorapp/version.rb

@@ -1,3 +1,3 @@
 module GeneValidatorApp
-  VERSION = '1.5.3'
+  VERSION = '1.5.4'
 end

data/public/GeneValidator/loading.html

@@ -9,4 +9,4 @@
   <h2> Calculating...</h2>
   <p class="results_link"> This may take some time. Please leave this page open.</p>
 </div>
-<footer><div class="container center-block"><p class="text-muted text-center">Please cite: "Dragan M<sup>&Dagger;</sup>, Moghul MI<sup>&Dagger;</sup>, Priyam A, Bustos C &amp; Wurm Y <em>(in prep)</em> GeneValidator: identify problematic gene predictions"<br/>  Developed at <a href="https://wurmlab.github.io" target="_blank">Wurm Lab</a>, <a href="http://www.sbcs.qmul.ac.uk" target="_blank">QMUL</a> with funding by <a href="http://www.bbsrc.ac.uk/home/home.aspx" target="_blank">BBSRC</a> and <a href="https://www.google-melange.com/gsoc/homepage/google/gsoc2013" target="_blank">Google Summer of Code 2013</a><br/>This page was created by <a href="https://github.com/wurmlab/genevalidator" target="_blank" >GeneValidator</a> v1.6.5</p></div></footer></body></html>
+<footer><div class="container center-block"><p class="text-muted text-center">Please cite: <a href="http://bioinformatics.oxfordjournals.org/content/early/2016/01/18/bioinformatics.btw015">Dragan M<sup>&Dagger;</sup>, Moghul MI<sup>&Dagger;</sup>, Priyam A, Bustos C &amp; Wurm Y. 2016. GeneValidator: identify problems with protein-coding gene predictions". <em>Bioinformatics</em>, doi: 10.1093/bioinformatics/btw015</a>.<br/>Developed at <a href="https://wurmlab.github.io" target="_blank">Wurm Lab</a>, <a href="http://www.sbcs.qmul.ac.uk" target="_blank">QMUL</a> with funding by <a href="http://www.bbsrc.ac.uk/home/home.aspx" target="_blank">BBSRC</a> and <a href="https://www.google-melange.com/gsoc/homepage/google/gsoc2013" target="_blank">Google Summer of Code 2013</a><br/>This page was created by <a href="https://github.com/wurmlab/genevalidator" target="_blank" >GeneValidator</a> v1.6.5</p></div></footer></body></html>

data/views/layout.slim

@@ -31,16 +31,14 @@ html lang="en"
         .navbar-collapse.collapse.navbar-responsive-collapse
           ul.nav.navbar-nav
             li
-              a href="#" Home
+              a href="https://wurmlab.github.io/tools/genevalidator/" target="_blank"  GeneValidator
             li
-              a href="https://github.com/wurmlab/genevalidatorapp" target="_blank"  Source Code
-            li
-              a href="https://wurmlab.github.io/GeneValidatorApp-API" target="_blank"  API
-            /!   a href="#"  Documentation
-            /! li
-            /!   a href="#"  Support
+              a href="https://wurmlab.github.io/tools/genevalidator/api" target="_blank"  API
             li
               a href="https://wurmlab.github.io" target="_blank" Wurm Lab
+            li
+              a href="http://doi.org/10.1093/bioinformatics/btw015" target="_blank"  Publication
+
           ul.nav.navbar-nav.navbar-right
             li
               a.nav_github_icon href="https://github.com/wurmlab/genevalidatorapp" target="_blank"
@@ -55,10 +53,9 @@ html lang="en"
             i.fa.fa-spinner.fa-5x.fa-spin
     footer#footer
       p.text-muted.text-center
-        | Please cite "Dragan M<sup>&Dagger;</sup>, Moghul MI<sup>&Dagger;</sup>, Priyam A, Bustos C &amp; Wurm Y 
-        em
-          | (in prep) 
-        | GeneValidator: identify problematic gene predictions"
+        | Please cite: 
+        <a href="http://doi.org/10.1093/bioinformatics/btw015">Dragan M<sup>&Dagger;</sup>, Moghul MI<sup>&Dagger;</sup>, Priyam A, Bustos C &amp; Wurm Y. 2016. GeneValidator: identify problematic gene predictions. 
+        <em>Bioinformatics</em>, doi: 10.1093/bioinformatics/btw015</a>.
         br
         |  Developed at 
         a href="https://wurmlab.github.io" target="_blank" Wurm Lab

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: genevalidatorapp
 version: !ruby/object:Gem::Version
-  version: 1.5.3
+  version: 1.5.4
 platform: ruby
 authors:
 - Monica Dragan
@@ -11,7 +11,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2015-09-21 00:00:00.000000000 Z
+date: 2016-09-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -208,6 +208,7 @@ files:
 - Rakefile
 - bin/genevalidatorapp
 - config.ru
+- docker/Dockerfile
 - genevalidatorapp.gemspec
 - lib/genevalidatorapp.rb
 - lib/genevalidatorapp/config.rb