genevalidator 1.6.10 → 1.6.11

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 38297d81546366272db08cb00a7f2a4ae3319026
+  metadata.gz: a7c1ad55ab9a31a54b755f73eba90c6c8d0a71ac
+  data.tar.gz: ab0a311e92cdfcfbeaddbfda72aa254f623acd80
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+  data.tar.gz: 3aeab68cb1f421a2053f0d388a452aa9fb385880d7a3e937bfd6e66ee5f0891a34e81b36d88382b0089f7e6123e2b1fa4b56ce733768bae697e87ea9209e5791

data/lib/genevalidator/validation_maker_qi.rb

@@ -25,9 +25,15 @@ module GeneValidator
     end
 
     def explain
-      "#{@exons}% of exons match an EST/mRNA-seq alignment and" \
-      " #{@splice_sites}% of splice sites are confirmed by EST/mRNA-seq" \
-      " alignment."
+      if @splice_sites == -100
+        "#{@exons}% of exons match an EST/mRNA-seq alignment." \
+        " No splice sites were identified and as such cannot be confirmed by" \
+        " an EST/mRNA-seq alignment."
+      else
+        "#{@exons}% of exons match an EST/mRNA-seq alignment and" \
+        " #{@splice_sites}% of splice sites are confirmed by EST/mRNA-seq" \
+        " alignment."
+      end
     end
 
     def conclude
@@ -98,11 +104,11 @@ module GeneValidator
       @validation_report =  ValidationReport.new('No MAKER Quality Index',
                                                  :warning, @short_header,
                                                  @header, @description)
-    rescue
-      @validation_report = ValidationReport.new('Unexpected error', :error,
-                                                @short_header, @header,
-                                                @description)
-      @validation_report.errors.push 'Unexpected Error'
+    # rescue
+    #   @validation_report = ValidationReport.new('Unexpected error', :error,
+    #                                             @short_header, @header,
+    #                                             @description)
+    #   @validation_report.errors.push 'Unexpected Error'
     end
   end
 end

data/lib/genevalidator/version.rb

@@ -1,3 +1,3 @@
 module GeneValidator
-  VERSION = '1.6.10'
+  VERSION = '1.6.11'
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: genevalidator
 version: !ruby/object:Gem::Version
-  version: 1.6.10
+  version: 1.6.11
 platform: ruby
 authors:
 - Monica Dragan