gene-matcher 0.1.3 → 0.1.5

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 542591804860aefbbbefe0ff8fb0bc0ed35175d21f1588cf79a3c3d20ddeadf1
-  data.tar.gz: 70a9445149ee4773105245aec782abd46d47987af67107af290ee784114546d4
+  metadata.gz: f451b24184e517be0bfdf398c1ad227be0c956a7e3173f7a31a45530af64291d
+  data.tar.gz: ee44f41ce12e8ac4a311c58a59339621230513bbe6202083bae3f044f830f4c6
 SHA512:
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+  data.tar.gz: 27614deb05f5649814174f3c5e4f8b771d3610c4dd9d8034409326f7dff77a32140e1fd038e6f055b1aa1661f0d3ea7ffe18cd0856617bd30c524ef5a28ee9b2

data/lib/alignment.rb

@@ -21,8 +21,8 @@ class Alignment
     @reversed = false
     # 逆の鎖
     @aside = false
-    # アライメント対象配列の取得先。egtcの場合、クローンテーブルまたはアクセッションテーブル
-    @source = ""
+    # アライメント対象配列の取得先情報(任意)。例えば、データベースのテーブル名やIDなど。
+    @source = {}
   end
 
   def init_from_hash(h)
@@ -39,6 +39,22 @@ class Alignment
     @source = h["source"]
   end
 
+  def to_h
+    # ハッシュに変換
+    h = {}
+    h["score"] = @score
+    h["alignmentI"] = @alignmentI
+    h["alignmentJ"] = @alignmentJ
+    h["startI"] = @startI
+    h["startJ"] = @startJ
+    h["endI"] = @endI
+    h["endJ"] = @endJ
+    h["reversed"] = @reversed
+    h["aside"] = @aside
+    h["source"] = @source
+    return h
+  end
+
   # 二つの配列の一致部分と不一致部分を表した文字列を返す。
   # ex. AGTCAAAAAAAAA- :...:::::::::. AT-TAAAAAAAAAG
   # 

data/lib/gene-matcher.rb

@@ -11,9 +11,10 @@ class Matcher
     @alignments = []
   end
 
-  def scan(target_sequence)
+  def scan(target_sequence,source = {})
     sw = SmithWaterman.instance
     a = sw.alignment(target_sequence, @input_sequence)
+    a.source = source
     @alignments += [a] if a.score >= @limit
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: gene-matcher
 version: !ruby/object:Gem::Version
-  version: 0.1.3
+  version: 0.1.5
 platform: ruby
 authors:
 - ITO Yosei
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2023-08-20 00:00:00.000000000 Z
+date: 2023-08-31 00:00:00.000000000 Z
 dependencies: []
 description: Algorithm for determining similar regions between nucleic acid sequences.
 email: y-itou@lumber-mill.co.jp