gene-matcher 0.1.1 → 0.1.3
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- checksums.yaml +4 -4
- data/lib/alignment.rb +16 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 542591804860aefbbbefe0ff8fb0bc0ed35175d21f1588cf79a3c3d20ddeadf1
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4
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+
data.tar.gz: 70a9445149ee4773105245aec782abd46d47987af67107af290ee784114546d4
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 228c3c394ee195c98539b864ad792b992b126b06888ade93608c20b34084881efbead34160e2ca511ce98058dc658c05bca39de90009b82216a0bc749238b593
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7
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+
data.tar.gz: 8dbda54da5dadd0326b2e9f88f327fa4227f1d16055a1a2e971922c7e76364727eefd9a5335b5e96ff8215e144c20e6e669bf6fd64917935bed43888bf4fe41f
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data/lib/alignment.rb
CHANGED
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@@ -3,7 +3,8 @@ class Alignment
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3
3
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4
4
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BLANK = "-"
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5
5
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6
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-
def initialize
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6
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+
def initialize(h=nil)
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7
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+
return init_from_hash(h) if h
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7
8
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# スコア
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8
9
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@score = 0
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9
10
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# 検索対象（データベースに入っていた）配列
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@@ -24,6 +25,20 @@ class Alignment
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24
25
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@source = ""
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25
26
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end
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26
27
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28
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+
def init_from_hash(h)
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29
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# 引数のハッシュから初期化
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30
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@score = h["score"]
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31
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@alignmentI = h["alignmentI"]
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32
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+
@alignmentJ = h["alignmentJ"]
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33
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@startI = h["startI"]
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34
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@startJ = h["startJ"]
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35
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+
@endI = h["endI"]
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36
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+
@endJ = h["endJ"]
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37
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+
@reversed = h["reversed"]
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38
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+
@aside = h["aside"]
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39
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+
@source = h["source"]
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40
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+
end
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41
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+
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27
42
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# 二つの配列の一致部分と不一致部分を表した文字列を返す。
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28
43
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# ex. AGTCAAAAAAAAA- :...:::::::::. AT-TAAAAAAAAAG
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29
44
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#
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: gene-matcher
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.3
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- ITO Yosei
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
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-
date: 2023-08-
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11
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+
date: 2023-08-20 00:00:00.000000000 Z
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12
12
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dependencies: []
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13
13
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description: Algorithm for determining similar regions between nucleic acid sequences.
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14
14
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email: y-itou@lumber-mill.co.jp
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