gene-matcher 0.1.1 → 0.1.2
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- checksums.yaml +4 -4
- data/lib/alignment.rb +16 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 994ce901fa0a9e406f841ee1b6ba797c525b25166addf9aec9255e01dbb97946
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4
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+
data.tar.gz: edce47268a1060b59ab9c070583e4c9473cf815dac0f91dc5acc781d7ae04961
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 9cbacf6508cc5bb007529092b530ebe8a5f164be10bbab54401f9ef2ffbf823f1ce6c2ea00dff2f451fc31649e370a9e6db6f3f3e4dabb94a53ecaad84ce1a8d
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7
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+
data.tar.gz: 6d622d0e756f56a15bbe23b9a20ac2d07288c39389f0f64d122521c0eac7dbad1c05b5b6026b020d20550b81445cb5d82299b4c123480b4e18569e6fe36e3f96
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data/lib/alignment.rb
CHANGED
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@@ -3,7 +3,8 @@ class Alignment
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3
3
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4
4
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BLANK = "-"
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5
5
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6
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-
def initialize
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6
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+
def initialize(h=nil)
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7
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+
return init_from_hash(h) if h
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7
8
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# スコア
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8
9
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@score = 0
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9
10
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# 検索対象（データベースに入っていた）配列
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@@ -24,6 +25,20 @@ class Alignment
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24
25
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@source = ""
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25
26
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end
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26
27
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28
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+
def init_from_hash(h)
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29
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# 引数のハッシュから初期化
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30
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@score = h[:score]
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31
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@alignmentI = h[:alignmentI]
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32
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@alignmentJ = h[:alignmentJ]
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33
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@startI = h[:startI]
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34
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@startJ = h[:startJ]
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35
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@endI = h[:endI]
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36
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@endJ = h[:endJ]
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37
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@reversed = h[:reversed]
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38
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@aside = h[:aside]
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39
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+
@source = h[:source]
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40
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+
end
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41
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+
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27
42
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# 二つの配列の一致部分と不一致部分を表した文字列を返す。
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28
43
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# ex. AGTCAAAAAAAAA- :...:::::::::. AT-TAAAAAAAAAG
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29
44
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#
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: gene-matcher
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.2
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- ITO Yosei
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
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-
date: 2023-08-
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11
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+
date: 2023-08-20 00:00:00.000000000 Z
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12
12
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dependencies: []
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13
13
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description: Algorithm for determining similar regions between nucleic acid sequences.
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14
14
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email: y-itou@lumber-mill.co.jp
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