gbifrb 0.1.0
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +7 -0
- data/.gitignore +38 -0
- data/.travis.yml +8 -0
- data/CHANGELOG.md +3 -0
- data/CONDUCT.md +25 -0
- data/Gemfile +3 -0
- data/Gemfile.lock +64 -0
- data/LICENSE +7 -0
- data/README.md +127 -0
- data/Rakefile +41 -0
- data/gbifrb.gemspec +35 -0
- data/lib/gbifrb.rb +48 -0
- data/lib/gbifrb/Occurrences.rb +399 -0
- data/lib/gbifrb/Registry.rb +485 -0
- data/lib/gbifrb/Species.rb +223 -0
- data/lib/gbifrb/constants.rb +36 -0
- data/lib/gbifrb/error.rb +22 -0
- data/lib/gbifrb/faraday.rb +71 -0
- data/lib/gbifrb/get_data.rb +130 -0
- data/lib/gbifrb/helpers/configuration.rb +26 -0
- data/lib/gbifrb/request.rb +51 -0
- data/lib/gbifrb/response.rb +39 -0
- data/lib/gbifrb/utils.rb +60 -0
- data/lib/gbifrb/version.rb +3 -0
- metadata +276 -0
|
@@ -0,0 +1,26 @@
|
|
|
1
|
+
# taken from: https://viget.com/extend/easy-gem-configuration-variables-with-defaults
|
|
2
|
+
module Configuration
|
|
3
|
+
|
|
4
|
+
def configuration
|
|
5
|
+
yield self
|
|
6
|
+
end
|
|
7
|
+
|
|
8
|
+
def define_setting(name, default = nil)
|
|
9
|
+
class_variable_set("@@#{name}", default)
|
|
10
|
+
define_class_method "#{name}=" do |value|
|
|
11
|
+
class_variable_set("@@#{name}", value)
|
|
12
|
+
end
|
|
13
|
+
define_class_method name do
|
|
14
|
+
class_variable_get("@@#{name}")
|
|
15
|
+
end
|
|
16
|
+
end
|
|
17
|
+
|
|
18
|
+
private
|
|
19
|
+
|
|
20
|
+
def define_class_method(name, &block)
|
|
21
|
+
(class << self; self; end).instance_eval do
|
|
22
|
+
define_method name, &block
|
|
23
|
+
end
|
|
24
|
+
end
|
|
25
|
+
|
|
26
|
+
end
|
|
@@ -0,0 +1,51 @@
|
|
|
1
|
+
require "faraday"
|
|
2
|
+
require "multi_json"
|
|
3
|
+
require "gbifrb/error"
|
|
4
|
+
require "gbifrb/constants"
|
|
5
|
+
require 'gbifrb/utils'
|
|
6
|
+
require 'gbifrb/helpers/configuration'
|
|
7
|
+
|
|
8
|
+
##
|
|
9
|
+
# Gbif::Request
|
|
10
|
+
#
|
|
11
|
+
# Class to perform HTTP requests to the Crossref API
|
|
12
|
+
module Gbif
|
|
13
|
+
class Request #:nodoc:
|
|
14
|
+
|
|
15
|
+
attr_accessor :endpt
|
|
16
|
+
attr_accessor :args
|
|
17
|
+
attr_accessor :verbose
|
|
18
|
+
attr_accessor :options
|
|
19
|
+
|
|
20
|
+
def initialize(endpt, args, verbose, options)
|
|
21
|
+
self.endpt = endpt
|
|
22
|
+
self.args = args
|
|
23
|
+
self.verbose = verbose
|
|
24
|
+
self.options = options
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
def perform
|
|
28
|
+
if verbose
|
|
29
|
+
conn = Faraday.new(:url => Gbif.base_url, :request => self.options || []) do |f|
|
|
30
|
+
f.response :logger
|
|
31
|
+
f.use FaradayMiddleware::RaiseHttpException
|
|
32
|
+
f.options.params_encoder = Faraday::FlatParamsEncoder
|
|
33
|
+
f.adapter Faraday.default_adapter
|
|
34
|
+
end
|
|
35
|
+
else
|
|
36
|
+
conn = Faraday.new(:url => Gbif.base_url, :request => self.options || []) do |f|
|
|
37
|
+
f.use FaradayMiddleware::RaiseHttpException
|
|
38
|
+
f.options.params_encoder = Faraday::FlatParamsEncoder
|
|
39
|
+
f.adapter Faraday.default_adapter
|
|
40
|
+
end
|
|
41
|
+
end
|
|
42
|
+
|
|
43
|
+
conn.headers[:user_agent] = make_ua
|
|
44
|
+
conn.headers["X-USER-AGENT"] = make_ua
|
|
45
|
+
|
|
46
|
+
res = conn.get self.endpt, self.args
|
|
47
|
+
return MultiJson.load(res.body)
|
|
48
|
+
end
|
|
49
|
+
|
|
50
|
+
end
|
|
51
|
+
end
|
|
@@ -0,0 +1,39 @@
|
|
|
1
|
+
##
|
|
2
|
+
# Gbif::Response
|
|
3
|
+
#
|
|
4
|
+
# Class to give back response
|
|
5
|
+
module Gbif
|
|
6
|
+
class Response #:nodoc:
|
|
7
|
+
attr_reader :ids, :response
|
|
8
|
+
|
|
9
|
+
def initialize(ids, res)
|
|
10
|
+
@ids = ids
|
|
11
|
+
@res = res
|
|
12
|
+
end
|
|
13
|
+
|
|
14
|
+
def raw_body
|
|
15
|
+
# @res
|
|
16
|
+
@res.collect { |x| x.body }
|
|
17
|
+
end
|
|
18
|
+
|
|
19
|
+
def parsed
|
|
20
|
+
# JSON.parse(@res.body)
|
|
21
|
+
@res.collect { |x| JSON.parse(x.body) }
|
|
22
|
+
end
|
|
23
|
+
|
|
24
|
+
def links
|
|
25
|
+
# @res['message']['link']
|
|
26
|
+
@res.collect { |x| x['message']['link'] }
|
|
27
|
+
end
|
|
28
|
+
|
|
29
|
+
def pdf
|
|
30
|
+
tmp = links
|
|
31
|
+
if !tmp.nil?
|
|
32
|
+
tmp.collect { |z|
|
|
33
|
+
z.select{ |x| x['content-type'] == "application/pdf" }[0]['URL']
|
|
34
|
+
}
|
|
35
|
+
end
|
|
36
|
+
end
|
|
37
|
+
|
|
38
|
+
end
|
|
39
|
+
end
|
data/lib/gbifrb/utils.rb
ADDED
|
@@ -0,0 +1,60 @@
|
|
|
1
|
+
def make_ua
|
|
2
|
+
requa = 'Faraday/v' + Faraday::VERSION
|
|
3
|
+
habua = 'Gbif/v' + Gbif::VERSION
|
|
4
|
+
return requa + ' ' + habua
|
|
5
|
+
end
|
|
6
|
+
|
|
7
|
+
class Hash
|
|
8
|
+
def tostrings
|
|
9
|
+
Hash[self.map{|(k,v)| [k.to_s,v]}]
|
|
10
|
+
end
|
|
11
|
+
end
|
|
12
|
+
|
|
13
|
+
class Hash
|
|
14
|
+
def tosymbols
|
|
15
|
+
Hash[self.map{|(k,v)| [k.to_sym,v]}]
|
|
16
|
+
end
|
|
17
|
+
end
|
|
18
|
+
|
|
19
|
+
def check_data(x, y)
|
|
20
|
+
if len2(x) == 1
|
|
21
|
+
testdata = [x]
|
|
22
|
+
else
|
|
23
|
+
testdata = x
|
|
24
|
+
end
|
|
25
|
+
|
|
26
|
+
for z in testdata
|
|
27
|
+
if !y.include? z
|
|
28
|
+
raise z + ' is not one of the choices'
|
|
29
|
+
end
|
|
30
|
+
end
|
|
31
|
+
end
|
|
32
|
+
|
|
33
|
+
def len2(x)
|
|
34
|
+
if x.class == String
|
|
35
|
+
return [x].length
|
|
36
|
+
else
|
|
37
|
+
return x.length
|
|
38
|
+
end
|
|
39
|
+
end
|
|
40
|
+
|
|
41
|
+
def stop(x)
|
|
42
|
+
raise ArgumentError, x
|
|
43
|
+
end
|
|
44
|
+
|
|
45
|
+
# def get_meta(x)
|
|
46
|
+
# if has_meta(x)
|
|
47
|
+
# return { z: x[z] for z in ['offset','limit','endOfRecords'] }
|
|
48
|
+
# else
|
|
49
|
+
# return nil
|
|
50
|
+
# end
|
|
51
|
+
# end
|
|
52
|
+
|
|
53
|
+
# def has_meta(x)
|
|
54
|
+
# if x.__class__ != dict
|
|
55
|
+
# return false
|
|
56
|
+
# else
|
|
57
|
+
# tmp = [y in x.keys() for y in ['offset','limit','endOfRecords']]
|
|
58
|
+
# return True in tmp
|
|
59
|
+
# end
|
|
60
|
+
# end
|
metadata
ADDED
|
@@ -0,0 +1,276 @@
|
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
|
2
|
+
name: gbifrb
|
|
3
|
+
version: !ruby/object:Gem::Version
|
|
4
|
+
version: 0.1.0
|
|
5
|
+
platform: ruby
|
|
6
|
+
authors:
|
|
7
|
+
- Scott Chamberlain
|
|
8
|
+
autorequire:
|
|
9
|
+
bindir: bin
|
|
10
|
+
cert_chain: []
|
|
11
|
+
date: 2017-09-07 00:00:00.000000000 Z
|
|
12
|
+
dependencies:
|
|
13
|
+
- !ruby/object:Gem::Dependency
|
|
14
|
+
name: bundler
|
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
|
16
|
+
requirements:
|
|
17
|
+
- - "~>"
|
|
18
|
+
- !ruby/object:Gem::Version
|
|
19
|
+
version: '1.14'
|
|
20
|
+
- - ">="
|
|
21
|
+
- !ruby/object:Gem::Version
|
|
22
|
+
version: 1.14.6
|
|
23
|
+
type: :development
|
|
24
|
+
prerelease: false
|
|
25
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
26
|
+
requirements:
|
|
27
|
+
- - "~>"
|
|
28
|
+
- !ruby/object:Gem::Version
|
|
29
|
+
version: '1.14'
|
|
30
|
+
- - ">="
|
|
31
|
+
- !ruby/object:Gem::Version
|
|
32
|
+
version: 1.14.6
|
|
33
|
+
- !ruby/object:Gem::Dependency
|
|
34
|
+
name: rake
|
|
35
|
+
requirement: !ruby/object:Gem::Requirement
|
|
36
|
+
requirements:
|
|
37
|
+
- - "~>"
|
|
38
|
+
- !ruby/object:Gem::Version
|
|
39
|
+
version: '12.0'
|
|
40
|
+
- - ">="
|
|
41
|
+
- !ruby/object:Gem::Version
|
|
42
|
+
version: 12.0.0
|
|
43
|
+
type: :development
|
|
44
|
+
prerelease: false
|
|
45
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
46
|
+
requirements:
|
|
47
|
+
- - "~>"
|
|
48
|
+
- !ruby/object:Gem::Version
|
|
49
|
+
version: '12.0'
|
|
50
|
+
- - ">="
|
|
51
|
+
- !ruby/object:Gem::Version
|
|
52
|
+
version: 12.0.0
|
|
53
|
+
- !ruby/object:Gem::Dependency
|
|
54
|
+
name: test-unit
|
|
55
|
+
requirement: !ruby/object:Gem::Requirement
|
|
56
|
+
requirements:
|
|
57
|
+
- - "~>"
|
|
58
|
+
- !ruby/object:Gem::Version
|
|
59
|
+
version: '3.2'
|
|
60
|
+
- - ">="
|
|
61
|
+
- !ruby/object:Gem::Version
|
|
62
|
+
version: 3.2.1
|
|
63
|
+
type: :development
|
|
64
|
+
prerelease: false
|
|
65
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
66
|
+
requirements:
|
|
67
|
+
- - "~>"
|
|
68
|
+
- !ruby/object:Gem::Version
|
|
69
|
+
version: '3.2'
|
|
70
|
+
- - ">="
|
|
71
|
+
- !ruby/object:Gem::Version
|
|
72
|
+
version: 3.2.1
|
|
73
|
+
- !ruby/object:Gem::Dependency
|
|
74
|
+
name: simplecov
|
|
75
|
+
requirement: !ruby/object:Gem::Requirement
|
|
76
|
+
requirements:
|
|
77
|
+
- - "~>"
|
|
78
|
+
- !ruby/object:Gem::Version
|
|
79
|
+
version: 0.14.1
|
|
80
|
+
type: :development
|
|
81
|
+
prerelease: false
|
|
82
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
83
|
+
requirements:
|
|
84
|
+
- - "~>"
|
|
85
|
+
- !ruby/object:Gem::Version
|
|
86
|
+
version: 0.14.1
|
|
87
|
+
- !ruby/object:Gem::Dependency
|
|
88
|
+
name: codecov
|
|
89
|
+
requirement: !ruby/object:Gem::Requirement
|
|
90
|
+
requirements:
|
|
91
|
+
- - "~>"
|
|
92
|
+
- !ruby/object:Gem::Version
|
|
93
|
+
version: 0.1.10
|
|
94
|
+
type: :development
|
|
95
|
+
prerelease: false
|
|
96
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
97
|
+
requirements:
|
|
98
|
+
- - "~>"
|
|
99
|
+
- !ruby/object:Gem::Version
|
|
100
|
+
version: 0.1.10
|
|
101
|
+
- !ruby/object:Gem::Dependency
|
|
102
|
+
name: json
|
|
103
|
+
requirement: !ruby/object:Gem::Requirement
|
|
104
|
+
requirements:
|
|
105
|
+
- - "~>"
|
|
106
|
+
- !ruby/object:Gem::Version
|
|
107
|
+
version: '2.0'
|
|
108
|
+
- - ">="
|
|
109
|
+
- !ruby/object:Gem::Version
|
|
110
|
+
version: 2.0.3
|
|
111
|
+
type: :development
|
|
112
|
+
prerelease: false
|
|
113
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
114
|
+
requirements:
|
|
115
|
+
- - "~>"
|
|
116
|
+
- !ruby/object:Gem::Version
|
|
117
|
+
version: '2.0'
|
|
118
|
+
- - ">="
|
|
119
|
+
- !ruby/object:Gem::Version
|
|
120
|
+
version: 2.0.3
|
|
121
|
+
- !ruby/object:Gem::Dependency
|
|
122
|
+
name: vcr
|
|
123
|
+
requirement: !ruby/object:Gem::Requirement
|
|
124
|
+
requirements:
|
|
125
|
+
- - "~>"
|
|
126
|
+
- !ruby/object:Gem::Version
|
|
127
|
+
version: '3.0'
|
|
128
|
+
- - ">="
|
|
129
|
+
- !ruby/object:Gem::Version
|
|
130
|
+
version: 3.0.3
|
|
131
|
+
type: :development
|
|
132
|
+
prerelease: false
|
|
133
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
134
|
+
requirements:
|
|
135
|
+
- - "~>"
|
|
136
|
+
- !ruby/object:Gem::Version
|
|
137
|
+
version: '3.0'
|
|
138
|
+
- - ">="
|
|
139
|
+
- !ruby/object:Gem::Version
|
|
140
|
+
version: 3.0.3
|
|
141
|
+
- !ruby/object:Gem::Dependency
|
|
142
|
+
name: webmock
|
|
143
|
+
requirement: !ruby/object:Gem::Requirement
|
|
144
|
+
requirements:
|
|
145
|
+
- - "~>"
|
|
146
|
+
- !ruby/object:Gem::Version
|
|
147
|
+
version: '2.3'
|
|
148
|
+
- - ">="
|
|
149
|
+
- !ruby/object:Gem::Version
|
|
150
|
+
version: 2.3.2
|
|
151
|
+
type: :development
|
|
152
|
+
prerelease: false
|
|
153
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
154
|
+
requirements:
|
|
155
|
+
- - "~>"
|
|
156
|
+
- !ruby/object:Gem::Version
|
|
157
|
+
version: '2.3'
|
|
158
|
+
- - ">="
|
|
159
|
+
- !ruby/object:Gem::Version
|
|
160
|
+
version: 2.3.2
|
|
161
|
+
- !ruby/object:Gem::Dependency
|
|
162
|
+
name: faraday
|
|
163
|
+
requirement: !ruby/object:Gem::Requirement
|
|
164
|
+
requirements:
|
|
165
|
+
- - "~>"
|
|
166
|
+
- !ruby/object:Gem::Version
|
|
167
|
+
version: 0.12.0.1
|
|
168
|
+
type: :runtime
|
|
169
|
+
prerelease: false
|
|
170
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
171
|
+
requirements:
|
|
172
|
+
- - "~>"
|
|
173
|
+
- !ruby/object:Gem::Version
|
|
174
|
+
version: 0.12.0.1
|
|
175
|
+
- !ruby/object:Gem::Dependency
|
|
176
|
+
name: faraday_middleware
|
|
177
|
+
requirement: !ruby/object:Gem::Requirement
|
|
178
|
+
requirements:
|
|
179
|
+
- - "~>"
|
|
180
|
+
- !ruby/object:Gem::Version
|
|
181
|
+
version: 0.11.0.1
|
|
182
|
+
type: :runtime
|
|
183
|
+
prerelease: false
|
|
184
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
185
|
+
requirements:
|
|
186
|
+
- - "~>"
|
|
187
|
+
- !ruby/object:Gem::Version
|
|
188
|
+
version: 0.11.0.1
|
|
189
|
+
- !ruby/object:Gem::Dependency
|
|
190
|
+
name: thor
|
|
191
|
+
requirement: !ruby/object:Gem::Requirement
|
|
192
|
+
requirements:
|
|
193
|
+
- - "~>"
|
|
194
|
+
- !ruby/object:Gem::Version
|
|
195
|
+
version: 0.19.4
|
|
196
|
+
type: :runtime
|
|
197
|
+
prerelease: false
|
|
198
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
199
|
+
requirements:
|
|
200
|
+
- - "~>"
|
|
201
|
+
- !ruby/object:Gem::Version
|
|
202
|
+
version: 0.19.4
|
|
203
|
+
- !ruby/object:Gem::Dependency
|
|
204
|
+
name: multi_json
|
|
205
|
+
requirement: !ruby/object:Gem::Requirement
|
|
206
|
+
requirements:
|
|
207
|
+
- - "~>"
|
|
208
|
+
- !ruby/object:Gem::Version
|
|
209
|
+
version: '1.12'
|
|
210
|
+
- - ">="
|
|
211
|
+
- !ruby/object:Gem::Version
|
|
212
|
+
version: 1.12.1
|
|
213
|
+
type: :runtime
|
|
214
|
+
prerelease: false
|
|
215
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
216
|
+
requirements:
|
|
217
|
+
- - "~>"
|
|
218
|
+
- !ruby/object:Gem::Version
|
|
219
|
+
version: '1.12'
|
|
220
|
+
- - ">="
|
|
221
|
+
- !ruby/object:Gem::Version
|
|
222
|
+
version: 1.12.1
|
|
223
|
+
description: Low Level Ruby Client for the GBIF API
|
|
224
|
+
email: myrmecocystus@gmail.com
|
|
225
|
+
executables: []
|
|
226
|
+
extensions: []
|
|
227
|
+
extra_rdoc_files: []
|
|
228
|
+
files:
|
|
229
|
+
- ".gitignore"
|
|
230
|
+
- ".travis.yml"
|
|
231
|
+
- CHANGELOG.md
|
|
232
|
+
- CONDUCT.md
|
|
233
|
+
- Gemfile
|
|
234
|
+
- Gemfile.lock
|
|
235
|
+
- LICENSE
|
|
236
|
+
- README.md
|
|
237
|
+
- Rakefile
|
|
238
|
+
- gbifrb.gemspec
|
|
239
|
+
- lib/gbifrb.rb
|
|
240
|
+
- lib/gbifrb/Occurrences.rb
|
|
241
|
+
- lib/gbifrb/Registry.rb
|
|
242
|
+
- lib/gbifrb/Species.rb
|
|
243
|
+
- lib/gbifrb/constants.rb
|
|
244
|
+
- lib/gbifrb/error.rb
|
|
245
|
+
- lib/gbifrb/faraday.rb
|
|
246
|
+
- lib/gbifrb/get_data.rb
|
|
247
|
+
- lib/gbifrb/helpers/configuration.rb
|
|
248
|
+
- lib/gbifrb/request.rb
|
|
249
|
+
- lib/gbifrb/response.rb
|
|
250
|
+
- lib/gbifrb/utils.rb
|
|
251
|
+
- lib/gbifrb/version.rb
|
|
252
|
+
homepage: https://github.com/sckott/gbifrb
|
|
253
|
+
licenses:
|
|
254
|
+
- MIT
|
|
255
|
+
metadata: {}
|
|
256
|
+
post_install_message:
|
|
257
|
+
rdoc_options: []
|
|
258
|
+
require_paths:
|
|
259
|
+
- lib
|
|
260
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
|
261
|
+
requirements:
|
|
262
|
+
- - ">="
|
|
263
|
+
- !ruby/object:Gem::Version
|
|
264
|
+
version: '2.0'
|
|
265
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
266
|
+
requirements:
|
|
267
|
+
- - ">="
|
|
268
|
+
- !ruby/object:Gem::Version
|
|
269
|
+
version: '0'
|
|
270
|
+
requirements: []
|
|
271
|
+
rubyforge_project:
|
|
272
|
+
rubygems_version: 2.6.12
|
|
273
|
+
signing_key:
|
|
274
|
+
specification_version: 4
|
|
275
|
+
summary: GBIF Client
|
|
276
|
+
test_files: []
|