galaaz 2.1.7 → 2.1.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (77) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +9 -0
  3. data/blogs/galaaz_ggplot/galaaz_ggplot.Rmd +63 -58
  4. data/blogs/galaaz_ggplot/galaaz_ggplot.log +59 -68
  5. data/blogs/galaaz_ggplot/galaaz_ggplot.md +91 -84
  6. data/blogs/galaaz_ggplot/galaaz_ggplot.tex +125 -94
  7. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-html/midwest_rb.png +0 -0
  8. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-html/scatter_plot_rb.png +0 -0
  9. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-markdown_github/midwest_rb.png +0 -0
  10. data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-markdown_github/scatter_plot_rb.png +0 -0
  11. data/blogs/gknit/gknit.Rmd +33 -28
  12. data/blogs/gknit/gknit.md +47 -42
  13. data/blogs/gknit/gknit.tex +1368 -0
  14. data/blogs/gknit/gknit_files/figure-html/bubble-1.png +0 -0
  15. data/blogs/gknit/gknit_files/figure-html/diverging_bar.png +0 -0
  16. data/blogs/gknit/gknit_files/figure-latex/bubble-1.png +0 -0
  17. data/blogs/gknit/gknit_files/gknit_files/figure-latex/bubble-1.png +0 -0
  18. data/blogs/manual/manual.Rmd +129 -60
  19. data/blogs/manual/manual.log +289 -545
  20. data/blogs/manual/manual.md +551 -467
  21. data/blogs/manual/manual.tex +1059 -485
  22. data/blogs/manual/manual_files/figure-html/bubble-1.png +0 -0
  23. data/blogs/manual/manual_files/figure-latex/bubble-1.png +0 -0
  24. data/blogs/manual/manual_files/figure-markdown_github/bubble-1.png +0 -0
  25. data/blogs/manual/manual_files/figure-markdown_github/diverging_bar.png +0 -0
  26. data/blogs/manual/manual_files/manual_files/figure-latex/bubble-1.png +0 -0
  27. data/blogs/nse_dplyr/nse_dplyr.Rmd +28 -7
  28. data/blogs/nse_dplyr/nse_dplyr.log +49 -153
  29. data/blogs/nse_dplyr/nse_dplyr.md +676 -705
  30. data/blogs/nse_dplyr/nse_dplyr.tex +1589 -0
  31. data/blogs/oh_my/oh_my.Rmd +193 -55
  32. data/blogs/oh_my/oh_my.log +265 -95
  33. data/blogs/oh_my/oh_my.md +236 -95
  34. data/blogs/oh_my/oh_my.tex +1976 -68
  35. data/blogs/ruby_plot/ruby_plot.Rmd +42 -34
  36. data/blogs/ruby_plot/ruby_plot.log +101 -99
  37. data/blogs/ruby_plot/ruby_plot.md +52 -46
  38. data/blogs/ruby_plot/ruby_plot.tex +134 -102
  39. data/blogs/ruby_plot/ruby_plot_files/figure-html/dose_len.png +0 -0
  40. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_delivery.png +0 -0
  41. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_dose.png +0 -0
  42. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color.png +0 -0
  43. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color2.png +0 -0
  44. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_decorations.png +0 -0
  45. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_jitter.png +0 -0
  46. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_points.png +0 -0
  47. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_box_plot.png +0 -0
  48. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_violin_plot.png +0 -0
  49. data/blogs/ruby_plot/ruby_plot_files/figure-html/violin_with_jitter.png +0 -0
  50. data/blogs/ruby_plot/ruby_plot_files/figure-latex/dose_len.png +0 -0
  51. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facet_by_delivery.png +0 -0
  52. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facet_by_dose.png +0 -0
  53. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_by_delivery_color.png +0 -0
  54. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_by_delivery_color2.png +0 -0
  55. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_decorations.png +0 -0
  56. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_jitter.png +0 -0
  57. data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_points.png +0 -0
  58. data/blogs/ruby_plot/ruby_plot_files/figure-latex/final_box_plot.png +0 -0
  59. data/blogs/ruby_plot/ruby_plot_files/figure-latex/final_violin_plot.png +0 -0
  60. data/blogs/ruby_plot/ruby_plot_files/figure-latex/violin_with_jitter.png +0 -0
  61. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/dose_len.png +0 -0
  62. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/facet_by_delivery.png +0 -0
  63. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/facet_by_dose.png +0 -0
  64. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/facets_by_delivery_color.png +0 -0
  65. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/facets_by_delivery_color2.png +0 -0
  66. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/facets_with_decorations.png +0 -0
  67. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/facets_with_jitter.png +0 -0
  68. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/facets_with_points.png +0 -0
  69. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/final_box_plot.png +0 -0
  70. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/final_violin_plot.png +0 -0
  71. data/blogs/ruby_plot/ruby_plot_files/ruby_plot_files/figure-latex/violin_with_jitter.png +0 -0
  72. data/lib/galaaz/cli.rb +51 -10
  73. data/script/omarchy/README.md +1 -1
  74. data/script/omarchy/galaaz-guide.sh +1 -1
  75. data/sty/galaaz.sty +22 -0
  76. data/version.rb +1 -1
  77. metadata +19 -1
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+ \newcolumntype{L}[1]{>{\raggedright\let\newline\\\arraybackslash\hspace{0pt}}m{#1}}
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+ \newcolumntype{R}[1]{>{\raggedleft\let\newline\\\arraybackslash\hspace{0pt}}m{#1}}
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+
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+ % necessário if we need to import other latex documents
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+ \usepackage{import}
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+
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+ % Command to import an R variable to latex
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+ \newcommand{\RtoLatex}[2]{\newcommand{#1}{#2}}
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+
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+ % Soft-wrap Pandoc highlighted code/output boxes (Shaded + Highlighting).
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+ % This runs after Pandoc's default \DefineVerbatimEnvironment{Highlighting}
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+ \IfFileExists{fvextra.sty}{%
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+
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+ %
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+ %\newcommand{\atraso}[1]{\color{red} \textbf {Tempo desde a Assinatura do Contrato: #1 dias}}
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+ \usepackage{bookmark}
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+ \IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
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+ \urlstyle{same}
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+ \hypersetup{
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+ pdftitle={Non Standard Evaluation in dplyr with Galaaz},
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+ pdfauthor={Rodrigo Botafogo; Daniel Mossé - University of Pittsburgh},
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+ hidelinks,
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+ pdfcreator={LaTeX via pandoc}}
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+
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+ \title{Non Standard Evaluation in dplyr with Galaaz}
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+ \author{Rodrigo Botafogo \and Daniel Mossé - University of Pittsburgh}
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+ \date{10/05/2019 (narrative updated for Galaaz 2.0, 2026)}
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+
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+ \begin{document}
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+ \maketitle
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+
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+ {
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+ \setcounter{tocdepth}{2}
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+ \tableofcontents
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+ }
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+ \section{Introduction}\label{introduction}
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+
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+ According to Steven Sagaert's answer on Quora about ``Is programming
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+ language R overrated?'':
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+
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+ \begin{quote}
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+ R is a sophisticated language with an unusual (i.e.~non-mainstream) set
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+ of features. It`s an impure functional programming language with
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+ sophisticated metaprogramming and 3 different OO systems.
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+ \end{quote}
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+
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+ \begin{quote}
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+ Just like common lisp you can completely customise how things work via
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+ metaprogramming. The biggest example is the tidyverse: by creating it's
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+ own evaluation system (tidyeval) was able to create a custom syntax for
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+ dplyr.
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+ \end{quote}
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+
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+ \begin{quote}
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+ Mastering R (the language) and its ecosystem is not a matter of weeks or
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+ months but takes years. The rabbit hole goes pretty deep\ldots{}
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+ \end{quote}
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+
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+ Although a highly configurable language can give programmers a great
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+ deal of power, it can also take years to master---as noted above.
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+ Programming with \emph{dplyr}, for instance, means learning evaluation
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+ rules that are not always approachable for \textbf{statisticians and
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+ analysts who are not full-time software engineers}. That is not a
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+ criticism: R was \textbf{built} for \textbf{statisticians} who need
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+ trustworthy results on a deadline, not necessarily for building large
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+ applications.
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+
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+ \textbf{Unfortunately}, when such a user moves on to more
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+ \textbf{sophisticated} programming patterns, the learning curve can
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+ become a real hurdle.
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+
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+ In this post we will see how to program with \emph{dplyr} in Galaaz and
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+ how Ruby can simplify the learning curve of mastering \emph{dplyr}
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+ coding.
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+
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+ \section{But first, what is Galaaz??}\label{but-first-what-is-galaaz}
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+
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+ Galaaz is a system for tightly coupling Ruby and R. Ruby is a powerful
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+ language, with a large community, a very large set of libraries and
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+ great for web development. It is also easy to learn. However, it lacks
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+ libraries for data science, statistics, scientific plotting and machine
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+ learning. On the other hand, R is considered one of the most powerful
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+ languages for solving all of the above problems. \textbf{Python} is a
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+ strong competitor, with NumPy, pandas, SciPy, scikit-learn, and
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+ \textbf{many thousands} of other packages on PyPI. We will not dwell on
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+ R \textbf{versus} Python here: both are excellent languages with
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+ different strengths. Our interest is to bring to yet another excellent
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+ language, Ruby, the data science libraries that it lacks.
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+
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+ With Galaaz we do not intend to re-implement any of the scientific
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+ libraries in R. However, we allow for very tight coupling between the
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+ two languages to the point that the Ruby developer does not need to know
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+ that there is an R engine running. Also, from the point of view of the R
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+ user/developer, Galaaz looks a lot like R, with just minor syntactic
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+ difference, so there is almost no learning curve for the R developer.
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+ And as we will see in this post that programming with \emph{dplyr} is
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+ easier in Galaaz than in R.
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+
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+ R users are probably quite knowledgeable about \emph{dplyr}. For the
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+ Ruby developer, \emph{dplyr} and the \emph{tidyverse} libraries are a
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+ set of libraries for data manipulation in R, developed by Hadley
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+ Wickham, Chief Scientist at Posit (formerly RStudio) and a prolific R
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+ coder and writer.
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+
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+ For the coupling of Ruby and R, \textbf{Galaaz 2.0} uses
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+ \textbf{\href{https://www.jruby.org/}{JRuby}} (Ruby on the JVM) together
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+ with \textbf{GNU R}. A \textbf{bridge} sends expressions and data
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+ between Ruby and an R process so that Ruby can call \textbf{dplyr} and
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+ the rest of the tidyverse as if they were part of the same workflow. An
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+ \textbf{earlier} Galaaz line of work used Oracle's \textbf{GraalVM} with
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+ \textbf{TruffleRuby} and \textbf{FastR} in a single runtime; that
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+ approach is \textbf{no longer} the supported stack---see the project
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+ \textbf{manual} for setup, \textbf{\texttt{bin/galaaz-jruby}}, and
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+ \textbf{gKnit}.
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+
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+ \section{Tidyverse and dplyr}\label{tidyverse-and-dplyr}
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+
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+ In
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+ \href{https://rviews.rstudio.com/2017/06/08/what-is-the-tidyverse/}{What
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+ is the tidyverse?} the tidyverse is explained as follows:
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+
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+ \begin{quote}
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+ The tidyverse is a coherent system of packages for data manipulation,
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+ exploration and visualization that share a common design philosophy.
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+ These were mostly developed by Hadley Wickham himself, but they are now
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+ being expanded by several contributors. Tidyverse packages are intended
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+ to make statisticians and data scientists more productive by guiding
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+ them through workflows that facilitate communication, and result in
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+ reproducible work products. Fundamentally, the tidyverse is about the
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+ connections between the tools that make the workflow possible.
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+ \end{quote}
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+
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+ \emph{dplyr} is one of the many packages that are part of the tidyverse.
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+ It is:
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+
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+ \begin{quote}
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+ a grammar of data manipulation, providing a consistent set of verbs that
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+ help you solve the most common data manipulation challenges:
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+ \end{quote}
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+
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+ \begin{quote}
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+ \begin{enumerate}
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+ \def\labelenumi{\arabic{enumi}.}
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+ \tightlist
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+ \item
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+ mutate() adds new variables that are functions of existing variables
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+ \item
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+ select() picks variables based on their names.
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+ \item
326
+ filter() picks cases based on their values.
327
+ \item
328
+ summarise() reduces multiple values down to a single summary.
329
+ \item
330
+ arrange() changes the ordering of the rows.
331
+ \end{enumerate}
332
+ \end{quote}
333
+
334
+ Very often R is used interactively and users use \emph{dplyr} to
335
+ manipulate a single dataset without programming. When users want to
336
+ replicate their work for multiple datasets, programming becomes
337
+ necessary.
338
+
339
+ \section{Programming with dplyr}\label{programming-with-dplyr}
340
+
341
+ In the vignette
342
+ \href{https://dplyr.tidyverse.org/articles/programming.html}{``Programming
343
+ with dplyr''}, Hadley Wickham states:
344
+
345
+ \begin{quote}
346
+ Most dplyr functions use non-standard evaluation (NSE). This is a
347
+ catch-all term that means they don't follow the usual R rules of
348
+ evaluation. Instead, they capture the expression that you typed and
349
+ evaluate it in a custom way. This has two main benefits for dplyr code:
350
+ \end{quote}
351
+
352
+ \begin{quote}
353
+ Operations on data frames can be expressed succinctly because you don't
354
+ need to repeat the name of the data frame. For example, you can write
355
+ filter(df, x == 1, y == 2, z == 3) instead of df{[}df\$x == 1 \& df\$y
356
+ ==2 \& df\$z == 3, {]}.
357
+ \end{quote}
358
+
359
+ \begin{quote}
360
+ dplyr can choose to compute results in a different way to base R. This
361
+ is important for database backends because dplyr itself doesn't do any
362
+ work, but instead generates the SQL that tells the database what to do.
363
+ \end{quote}
364
+
365
+ But then he goes on:
366
+
367
+ \begin{quote}
368
+ Unfortunately these benefits do not come for free. There are two main
369
+ drawbacks:
370
+ \end{quote}
371
+
372
+ \begin{quote}
373
+ Most dplyr arguments are not referentially transparent. That means you
374
+ can't replace a value with a seemingly equivalent object that you've
375
+ defined elsewhere. In other words, this code:
376
+ \end{quote}
377
+
378
+ \begin{Shaded}
379
+ \begin{Highlighting}[]
380
+ \NormalTok{df }\OtherTok{\textless{}{-}} \FunctionTok{data.frame}\NormalTok{(}\AttributeTok{x =} \DecValTok{1}\SpecialCharTok{:}\DecValTok{3}\NormalTok{, }\AttributeTok{y =} \DecValTok{3}\SpecialCharTok{:}\DecValTok{1}\NormalTok{)}
381
+ \FunctionTok{print}\NormalTok{(}\FunctionTok{filter}\NormalTok{(df, x }\SpecialCharTok{==} \DecValTok{1}\NormalTok{))}
382
+ \CommentTok{\#\textgreater{} \# A tibble: 1 x 2}
383
+ \CommentTok{\#\textgreater{} x y}
384
+ \CommentTok{\#\textgreater{} \textless{}int\textgreater{} \textless{}int\textgreater{}}
385
+ \CommentTok{\#\textgreater{} 1 1 3}
386
+ \end{Highlighting}
387
+ \end{Shaded}
388
+
389
+ \begin{quote}
390
+ Is not equivalent to this code:
391
+ \end{quote}
392
+
393
+ \begin{Shaded}
394
+ \begin{Highlighting}[]
395
+ \NormalTok{my\_var }\OtherTok{\textless{}{-}}\NormalTok{ x}
396
+ \CommentTok{\#\textgreater{} Error in eval(expr, envir, enclos): object \textquotesingle{}x\textquotesingle{} not found}
397
+ \FunctionTok{filter}\NormalTok{(df, my\_var }\SpecialCharTok{==} \DecValTok{1}\NormalTok{)}
398
+ \CommentTok{\#\textgreater{} Error: object \textquotesingle{}my\_var\textquotesingle{} not found}
399
+ \end{Highlighting}
400
+ \end{Shaded}
401
+
402
+ \begin{quote}
403
+ This makes it hard to create functions with arguments that change how
404
+ dplyr verbs are computed.
405
+ \end{quote}
406
+
407
+ As a result of this, programming with \emph{dplyr} requires learning a
408
+ set of new ideas and concepts. In this vignette Hadley goes on showing
409
+ how to program ever more difficult problems with \emph{dplyr}, showing
410
+ the problems it faces and the new concepts needed to solve them.
411
+
412
+ In this blog, we will look at all the problems presented by Harley on
413
+ the vignette and show how those same problems can be solved using Galaaz
414
+ and the Ruby language.
415
+
416
+ This blog is organized as follows: first we show how to write
417
+ expressions using Galaaz.\\
418
+ Expressions are a fundamental concept in \emph{dplyr} and are not part
419
+ of basic Ruby. We extend the Ruby language create a manipulate
420
+ expressions that will be used by \emph{dplyr} functions.
421
+
422
+ Then we show very succintly how Ruby and R can be integrated and how R
423
+ functions are transparently called from Ruby. Galaaz
424
+ \href{https://github.com/rbotafogo/galaaz/wiki}{user manual} (still in
425
+ development) goes in much deeper detail about this integration.
426
+
427
+ Next in section ``Data manipulation wiht \emph{dplyr}'' we go through
428
+ all the problems on the \emph{dplyr} vignette and look at how they are
429
+ solved in Galaaz. We then discuss why programming with Galaaz and
430
+ \emph{dplyr} is easier than programming with \emph{dplyr} in plain R.
431
+
432
+ The following section looks at another more advanced problem and shows
433
+ that Galaaz can still handle it without any difficulty. We then provide
434
+ further reading and concluding remarks.
435
+
436
+ \section{Writing Expressions in
437
+ Galaaz}\label{writing-expressions-in-galaaz}
438
+
439
+ Galaaz extends Ruby to work with expressions, similar to R's expressions
440
+ build with `quote' (base R) or `quo' (tidyverse). Expressions in this
441
+ context are like mathematical expressions or formulae. For instance, in
442
+ mathematics, the expression \(y = sin(x)\) describes a function but
443
+ cannot be computed unless the value of \(x\) is bound to some value.
444
+
445
+ Expressions are fundamental in \emph{dplyr} programming as they are the
446
+ input to \emph{dplyr} functions, for instance, as we will see shortly,
447
+ if a data frame has a column named `x' and we want to add another
448
+ column, y, to this dataframe that has the values of `x' times 2, then we
449
+ would call a \emph{dplyr} function with the expression `y = x * 2'.
450
+
451
+ \subsection{A note on notation}\label{a-note-on-notation}
452
+
453
+ This blog was written in Rmarkdown and automatically converted to HTML
454
+ or PDF (depending on where you are reading this blog) with gKnit (a tool
455
+ provided by Galaaz). In Rmarkdown, it is possible to write text and code
456
+ blocks that are executed to generate the final report. Code blocks
457
+ appear inside a `box' and the result of their execution appear either in
458
+ another type of `box' with a different background (HTML) or as normal
459
+ text (PDF). Every output line from the code execution is preceded by
460
+ `\#\#'.
461
+
462
+ \subsection{Expressions from
463
+ operators}\label{expressions-from-operators}
464
+
465
+ The code below creates an expression summing two symbols. Note that :a
466
+ and :b are Ruby symbols and are not bound to any values at the time of
467
+ expression definition:
468
+
469
+ \begin{Shaded}
470
+ \begin{Highlighting}[]
471
+ \ControlFlowTok{begin}
472
+ \NormalTok{ exp1 }\OperatorTok{=} \WarningTok{:a} \OperatorTok{+} \WarningTok{:b}
473
+ \FunctionTok{puts}\NormalTok{ exp1}
474
+ \ControlFlowTok{rescue} \OperatorTok{=\textgreater{}}\NormalTok{ e}
475
+ \CommentTok{\# Bare Symbol\#+ is not expression sugar in Galaaz 2.0; short error for PDF.}
476
+ \FunctionTok{puts} \StringTok{"}\SpecialCharTok{\#\{}\NormalTok{e}\AttributeTok{.class}\SpecialCharTok{\}}\StringTok{: }\SpecialCharTok{\#\{}\NormalTok{e}\AttributeTok{.message}\SpecialCharTok{\}}\StringTok{"}
477
+ \ControlFlowTok{end}
478
+ \end{Highlighting}
479
+ \end{Shaded}
480
+
481
+ \begin{verbatim}
482
+ ## NoMethodError: undefined method '+' for an instance of Symbol
483
+ \end{verbatim}
484
+
485
+ In Galaaz, we can build any complex mathematical expression such as:
486
+
487
+ \begin{Shaded}
488
+ \begin{Highlighting}[]
489
+ \NormalTok{exp2 }\OperatorTok{=}\NormalTok{ (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{) }\OperatorTok{*} \FloatTok{2.0} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:c}\KeywordTok{]} \OperatorTok{**} \DecValTok{2} \OperatorTok{/} \ConstantTok{R}\KeywordTok{[}\WarningTok{:z}\KeywordTok{]}
490
+ \FunctionTok{puts}\NormalTok{ exp2}
491
+ \end{Highlighting}
492
+ \end{Shaded}
493
+
494
+ \begin{verbatim}
495
+ ## a + b * 2.0 + c ^ 2L / z
496
+ \end{verbatim}
497
+
498
+ Expressions are printed with the same format as the equivalent R
499
+ expressions. The `L' after 2 indicates that 2 is an integer.
500
+
501
+ The R developer should note that in R, if she writes the number `2', the
502
+ R interpreter will convert it to float. In order to get an interger she
503
+ should write `2L'. Galaaz follows Ruby notation and `2' is an integer,
504
+ while `2.0' is a float.
505
+
506
+ It is also possible to use inequality operators in building expressions:
507
+
508
+ \begin{Shaded}
509
+ \begin{Highlighting}[]
510
+ \NormalTok{exp3 }\OperatorTok{=}\NormalTok{ (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{) }\OperatorTok{\textgreater{}=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:z}\KeywordTok{]}
511
+ \FunctionTok{puts}\NormalTok{ exp3}
512
+ \end{Highlighting}
513
+ \end{Shaded}
514
+
515
+ \begin{verbatim}
516
+ ## a + b >= z
517
+ \end{verbatim}
518
+
519
+ Expressions' definition can also make use of normal Ruby variables
520
+ without any problem:
521
+
522
+ \begin{Shaded}
523
+ \begin{Highlighting}[]
524
+ \NormalTok{x }\OperatorTok{=} \DecValTok{20}
525
+ \NormalTok{y }\OperatorTok{=} \FloatTok{30.0}
526
+ \NormalTok{exp\_var }\OperatorTok{=}\NormalTok{ (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{) }\OperatorTok{*}\NormalTok{ x }\OperatorTok{\textless{}=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:z}\KeywordTok{]} \OperatorTok{{-}}\NormalTok{ y}
527
+ \FunctionTok{puts}\NormalTok{ exp\_var}
528
+ \end{Highlighting}
529
+ \end{Shaded}
530
+
531
+ \begin{verbatim}
532
+ ## a + b * 20L <= z - 30.0
533
+ \end{verbatim}
534
+
535
+ Galaaz provides both symbolic representations for operators, such as
536
+ (\textgreater, \textless, !=) as functional notation for those operators
537
+ such as (.gt, .ge, etc.). So the same expression written above can also
538
+ be written as
539
+
540
+ \begin{Shaded}
541
+ \begin{Highlighting}[]
542
+ \NormalTok{exp4 }\OperatorTok{=}\NormalTok{ (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{)}\AttributeTok{.ge} \ConstantTok{R}\KeywordTok{[}\WarningTok{:z}\KeywordTok{]}
543
+ \FunctionTok{puts}\NormalTok{ exp4}
544
+ \end{Highlighting}
545
+ \end{Shaded}
546
+
547
+ \begin{verbatim}
548
+ ## a + b >= z
549
+ \end{verbatim}
550
+
551
+ Two types of expressions, however, can only be created with the
552
+ functional representation of the operators. Those are expressions
553
+ involving `==', and `='. This is the case since those symbols have
554
+ special meaning in Ruby and should not be redefined.
555
+
556
+ In order to write an expression involving `==' we need to use the method
557
+ `.eq' and for `=' we need the function `.assign':
558
+
559
+ \begin{Shaded}
560
+ \begin{Highlighting}[]
561
+ \NormalTok{exp5 }\OperatorTok{=}\NormalTok{ (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{)}\AttributeTok{.eq} \ConstantTok{R}\KeywordTok{[}\WarningTok{:z}\KeywordTok{]}
562
+ \FunctionTok{puts}\NormalTok{ exp5}
563
+ \end{Highlighting}
564
+ \end{Shaded}
565
+
566
+ \begin{verbatim}
567
+ ## a + b == z
568
+ \end{verbatim}
569
+
570
+ \begin{Shaded}
571
+ \begin{Highlighting}[]
572
+ \NormalTok{exp6 }\OperatorTok{=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:y}\KeywordTok{]}\AttributeTok{.assign} \ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}
573
+ \FunctionTok{puts}\NormalTok{ exp6}
574
+ \end{Highlighting}
575
+ \end{Shaded}
576
+
577
+ \begin{verbatim}
578
+ ## y <- a + b
579
+ \end{verbatim}
580
+
581
+ Users should be careful when writing expressions not to inadvertently
582
+ use `==' or `=' as this will generate an error, that might be a bit
583
+ cryptic (in future releases of Galaza, we plan to improve the error
584
+ message).
585
+
586
+ \begin{Shaded}
587
+ \begin{Highlighting}[]
588
+ \NormalTok{exp\_wrong }\OperatorTok{=}\NormalTok{ (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{) }\OperatorTok{==} \ConstantTok{R}\KeywordTok{[}\WarningTok{:z}\KeywordTok{]}
589
+ \FunctionTok{puts}\NormalTok{ exp\_wrong}
590
+ \end{Highlighting}
591
+ \end{Shaded}
592
+
593
+ \begin{verbatim}
594
+ ## false
595
+ \end{verbatim}
596
+
597
+ The problem lies with the fact that when using `==' we are comparing
598
+ expression (R{[}:a{]} + R{[}:b{]}) to expression R{[}:z{]} with `=='.
599
+ When this comparison is executed, the system tries to evaluate :a, :b
600
+ and :z, and those symbols, at this time, are not bound to anything
601
+ giving the ``object `a' not found'' message.
602
+
603
+ \subsection{Expressions with R
604
+ methods}\label{expressions-with-r-methods}
605
+
606
+ It is often necessary to create an expression that uses a method or
607
+ function. For instance, in mathematics, it's quite natural to write an
608
+ expressin such as \(y = sin(x)\). In this case, the `sin' function is
609
+ part of the expression and should not be immediately executed. When we
610
+ want the function to be part of the expression, we call the function
611
+ preceeding it by the letter E, such as `E.sin(x)'
612
+
613
+ \begin{Shaded}
614
+ \begin{Highlighting}[]
615
+ \NormalTok{exp7 }\OperatorTok{=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:y}\KeywordTok{]}\AttributeTok{.assign} \ConstantTok{E}\AttributeTok{.sin}\NormalTok{(}\ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}\NormalTok{)}
616
+ \FunctionTok{puts}\NormalTok{ exp7}
617
+ \end{Highlighting}
618
+ \end{Shaded}
619
+
620
+ \begin{verbatim}
621
+ ## y <- sin(x)
622
+ \end{verbatim}
623
+
624
+ Function expressions can also be written using `.' notation:
625
+
626
+ \begin{Shaded}
627
+ \begin{Highlighting}[]
628
+ \NormalTok{exp8 }\OperatorTok{=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:y}\KeywordTok{]}\AttributeTok{.assign} \ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}\AttributeTok{.sin}
629
+ \FunctionTok{puts}\NormalTok{ exp8}
630
+ \end{Highlighting}
631
+ \end{Shaded}
632
+
633
+ \begin{verbatim}
634
+ ## y <- sin(x)
635
+ \end{verbatim}
636
+
637
+ When a function has multiple arguments, the first one can be used before
638
+ the `.'. For instance, the R concatenate function `c', that concatenates
639
+ two or more arguments can be part of an expression as:
640
+
641
+ \begin{Shaded}
642
+ \begin{Highlighting}[]
643
+ \NormalTok{exp9 }\OperatorTok{=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}\AttributeTok{.c}\NormalTok{(}\ConstantTok{R}\KeywordTok{[}\WarningTok{:y}\KeywordTok{]}\NormalTok{)}
644
+ \FunctionTok{puts}\NormalTok{ exp9}
645
+ \end{Highlighting}
646
+ \end{Shaded}
647
+
648
+ \begin{verbatim}
649
+ ## c(x, y)
650
+ \end{verbatim}
651
+
652
+ Note that this gives an OO feeling to the code, as if we were saying `x'
653
+ concatenates `y'. As a side note, `.' notation can be used as the R pipe
654
+ operator `\%\textgreater\%', but is more general than the pipe.
655
+
656
+ \subsection{Evaluating an Expression}\label{evaluating-an-expression}
657
+
658
+ Although we are mainly focusing on expressions to pass them to
659
+ \emph{dplyr} functions, expressions can be evaluated by calling function
660
+ `eval' with a binding.
661
+
662
+ A binding can be provided with a list or a data frame as shown below:
663
+
664
+ \begin{Shaded}
665
+ \begin{Highlighting}[]
666
+ \NormalTok{exp }\OperatorTok{=}\NormalTok{ (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{) }\OperatorTok{*} \FloatTok{2.0} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:c}\KeywordTok{]} \OperatorTok{**} \DecValTok{2} \OperatorTok{/} \ConstantTok{R}\KeywordTok{[}\WarningTok{:z}\KeywordTok{]}
667
+ \FunctionTok{puts}\NormalTok{ exp}\AttributeTok{.eval}\NormalTok{(}\ConstantTok{R}\AttributeTok{.list}\NormalTok{(}\WarningTok{a:} \DecValTok{10}\NormalTok{, }\WarningTok{b:} \DecValTok{20}\NormalTok{, }\WarningTok{c:} \DecValTok{30}\NormalTok{, }\WarningTok{z:} \DecValTok{40}\NormalTok{))}
668
+ \end{Highlighting}
669
+ \end{Shaded}
670
+
671
+ \begin{verbatim}
672
+ ## [1] 72.5
673
+ \end{verbatim}
674
+
675
+ with a data frame:
676
+
677
+ \begin{Shaded}
678
+ \begin{Highlighting}[]
679
+ \NormalTok{df }\OperatorTok{=} \ConstantTok{R}\AttributeTok{.data\_\_frame}\NormalTok{(}
680
+ \WarningTok{a:} \ConstantTok{R}\AttributeTok{.c}\NormalTok{(}\DecValTok{1}\NormalTok{, }\DecValTok{2}\NormalTok{, }\DecValTok{3}\NormalTok{),}
681
+ \WarningTok{b:} \ConstantTok{R}\AttributeTok{.c}\NormalTok{(}\DecValTok{10}\NormalTok{, }\DecValTok{20}\NormalTok{, }\DecValTok{30}\NormalTok{),}
682
+ \WarningTok{c:} \ConstantTok{R}\AttributeTok{.c}\NormalTok{(}\DecValTok{100}\NormalTok{, }\DecValTok{200}\NormalTok{, }\DecValTok{300}\NormalTok{),}
683
+ \WarningTok{z:} \ConstantTok{R}\AttributeTok{.c}\NormalTok{(}\DecValTok{1000}\NormalTok{, }\DecValTok{2000}\NormalTok{, }\DecValTok{3000}\NormalTok{))}
684
+
685
+ \FunctionTok{puts}\NormalTok{ exp}\AttributeTok{.eval}\NormalTok{(df)}
686
+ \end{Highlighting}
687
+ \end{Shaded}
688
+
689
+ \begin{verbatim}
690
+ ## [1] 31 62 93
691
+ \end{verbatim}
692
+
693
+ \section{Using Galaaz to call R
694
+ functions}\label{using-galaaz-to-call-r-functions}
695
+
696
+ Galaaz tries to emulate as closely as possible the way R functions are
697
+ called and migrating from R to Galaaz should be quite easy requiring
698
+ only minor syntactic changes to an R script. In this post, we do not
699
+ have enough space to write a complete manual on Galaaz (a short manual
700
+ can be found at: \url{https://www.rubydoc.info/gems/galaaz/0.4.9}), so
701
+ we will present only a few examples scripts using Galaaz.
702
+
703
+ Basically, to call an R function from Ruby with Galaaz, one only needs
704
+ to preced the function with `R.'. For instance, to create a vector in R,
705
+ the `c' function is used. In Galaaz, a vector can be created by using
706
+ `R.c':
707
+
708
+ \begin{Shaded}
709
+ \begin{Highlighting}[]
710
+ \NormalTok{vec }\OperatorTok{=} \ConstantTok{R}\AttributeTok{.c}\NormalTok{(}\FloatTok{1.0}\NormalTok{, }\DecValTok{2}\NormalTok{, }\DecValTok{3}\NormalTok{)}
711
+ \FunctionTok{puts}\NormalTok{ vec}
712
+ \end{Highlighting}
713
+ \end{Shaded}
714
+
715
+ \begin{verbatim}
716
+ ## [1] 1 2 3
717
+ \end{verbatim}
718
+
719
+ A list is created in R with the `list' function, so in Galaaz we do:
720
+
721
+ \begin{Shaded}
722
+ \begin{Highlighting}[]
723
+ \NormalTok{list }\OperatorTok{=} \ConstantTok{R}\AttributeTok{.list}\NormalTok{(}\WarningTok{a:} \FloatTok{1.0}\NormalTok{, }\WarningTok{b:} \DecValTok{2}\NormalTok{, }\WarningTok{c:} \DecValTok{3}\NormalTok{)}
724
+ \FunctionTok{puts}\NormalTok{ list}
725
+ \end{Highlighting}
726
+ \end{Shaded}
727
+
728
+ \begin{verbatim}
729
+ ## $a
730
+ ## [1] 1
731
+ ##
732
+ ## $b
733
+ ## [1] 2
734
+ ##
735
+ ## $c
736
+ ## [1] 3
737
+ \end{verbatim}
738
+
739
+ Note that we can use named arguments in our list. The same code in R
740
+ would be:
741
+
742
+ \begin{Shaded}
743
+ \begin{Highlighting}[]
744
+ \NormalTok{lst }\OtherTok{=} \FunctionTok{list}\NormalTok{(}\AttributeTok{a =} \DecValTok{1}\NormalTok{, }\AttributeTok{b =} \DecValTok{2}\DataTypeTok{L}\NormalTok{, }\AttributeTok{c =} \DecValTok{3}\DataTypeTok{L}\NormalTok{)}
745
+ \FunctionTok{print}\NormalTok{(lst)}
746
+ \end{Highlighting}
747
+ \end{Shaded}
748
+
749
+ \begin{verbatim}
750
+ ## $a
751
+ ## [1] 1
752
+ ##
753
+ ## $b
754
+ ## [1] 2
755
+ ##
756
+ ## $c
757
+ ## [1] 3
758
+ \end{verbatim}
759
+
760
+ Now, let's say that `x' is an angle of 45\(^\circ\) and we acttually
761
+ want to create the expression \(y = sin(45^\circ)\), which is
762
+ \(y = 0.850...\). In this case, we will use `R.sin':
763
+
764
+ \begin{Shaded}
765
+ \begin{Highlighting}[]
766
+ \NormalTok{exp10 }\OperatorTok{=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:y}\KeywordTok{]}\AttributeTok{.assign} \ConstantTok{R}\AttributeTok{.sin}\NormalTok{(}\DecValTok{45}\NormalTok{)}
767
+ \FunctionTok{puts}\NormalTok{ exp10}
768
+ \end{Highlighting}
769
+ \end{Shaded}
770
+
771
+ \begin{verbatim}
772
+ ## y <- 0.850903524534118
773
+ \end{verbatim}
774
+
775
+ \section{\texorpdfstring{Data manipulation wiht
776
+ \emph{dplyr}}{Data manipulation wiht dplyr}}\label{data-manipulation-wiht-dplyr}
777
+
778
+ In this section we will give a brief tour \emph{dplyr}'s usage in Galaaz
779
+ and how to manipulate data in Ruby with it. This section will follow
780
+ \href{https://dplyr.tidyverse.org/articles/dplyr.html}{\emph{dplyr}'s
781
+ vignette} that explores the nycflights13 data set. This dataset contains
782
+ all 336776 flights that departed from New York City in 2013. The data
783
+ comes from the US Bureau of Transportation Statistics.
784
+
785
+ Let's start by taking a look at this dataset:
786
+
787
+ \begin{Shaded}
788
+ \begin{Highlighting}[]
789
+ \ConstantTok{R}\AttributeTok{.library}\NormalTok{(}\VerbatimStringTok{\textquotesingle{}nycflights13\textquotesingle{}}\NormalTok{)}
790
+ \CommentTok{\# check it\textquotesingle{}s dimension}
791
+ \FunctionTok{puts} \OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:flights}\KeywordTok{]}\AttributeTok{.dim}
792
+ \CommentTok{\# and the structure}
793
+ \OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:flights}\KeywordTok{]}\AttributeTok{.str}
794
+ \end{Highlighting}
795
+ \end{Shaded}
796
+
797
+ \begin{verbatim}
798
+ ## ~(dim(flights))
799
+ ## <environment: 0x57d8ad019298>
800
+ \end{verbatim}
801
+
802
+ Now, let's use a first verb of \emph{dplyr}: `filter'. This verb,
803
+ obviously, will filter the data by the given expression. In the next
804
+ block, we filter by columns `month' and `day'. The first argument to the
805
+ filter function is symbol `:flights'. A Ruby symbol, when given to an R
806
+ function will convert to the R variable of the same name, in this case
807
+ `flights', that holds the nycflights13 data frame.
808
+
809
+ The second and third arguments are expressions that will be used by the
810
+ filter function to filter by columns, looking for entries in which the
811
+ month and day are equal to 1.
812
+
813
+ \begin{Shaded}
814
+ \begin{Highlighting}[]
815
+ \FunctionTok{puts} \ConstantTok{R}\AttributeTok{.filter}\NormalTok{(}\WarningTok{:flights}\NormalTok{, (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:month}\KeywordTok{]}\AttributeTok{.eq} \DecValTok{1}\NormalTok{), (}\ConstantTok{R}\KeywordTok{[}\WarningTok{:day}\KeywordTok{]}\AttributeTok{.eq} \DecValTok{1}\NormalTok{))}
816
+ \end{Highlighting}
817
+ \end{Shaded}
818
+
819
+ \begin{verbatim}
820
+ ## # A tibble: 842 x 19
821
+ ## year month day dep_time sched_dep_time dep_delay arr_time
822
+ ## <int> <int> <int> <int> <int> <dbl> <int>
823
+ ## 1 2013 1 1 517 515 2 830
824
+ ## 2 2013 1 1 533 529 4 850
825
+ ## 3 2013 1 1 542 540 2 923
826
+ ## 4 2013 1 1 544 545 -1 1004
827
+ ## 5 2013 1 1 554 600 -6 812
828
+ ## 6 2013 1 1 554 558 -4 740
829
+ ## 7 2013 1 1 555 600 -5 913
830
+ ## 8 2013 1 1 557 600 -3 709
831
+ ## 9 2013 1 1 557 600 -3 838
832
+ ## 10 2013 1 1 558 600 -2 753
833
+ ## # i 832 more rows
834
+ ## # i 12 more variables: sched_arr_time <int>, arr_delay <dbl>,
835
+ ## # carrier <chr>, flight <int>, tailnum <chr>, origin <chr>,
836
+ ## # dest <chr>, air_time <dbl>, distance <dbl>, hour <dbl>,
837
+ ## # minute <dbl>, time_hour <dttm>
838
+ \end{verbatim}
839
+
840
+ \subsection{\texorpdfstring{Programming with \emph{dplyr}: problems and
841
+ how to solve them in
842
+ Galaaz}{Programming with dplyr: problems and how to solve them in Galaaz}}\label{programming-with-dplyr-problems-and-how-to-solve-them-in-galaaz}
843
+
844
+ In this section we look at the list of problems that Hadley describes in
845
+ the ``Programming with dplyr'' vignette and show how those problems are
846
+ solved and coded with Galaaz. Readers interested in how those problems
847
+ are treated in \emph{dplyr} should read the vignette and use it as a
848
+ comparison with this blog.
849
+
850
+ \subsection{Filtering using
851
+ expressions}\label{filtering-using-expressions}
852
+
853
+ Now that we know how to write expressions and call R functions, let's do
854
+ some data manipulation in Galaaz. Let's first start by creating a data
855
+ frame. In R, the `data.frame' function creates a data frame. In Ruby,
856
+ writing `data.frame' will not parse as a single object. To call R
857
+ functions that have a `.' in them, we need to substitute the `.' with
858
+ '\_\_`. So, method 'data.frame' in R, is called in Galaaz as
859
+ `R.data\_\_frame':
860
+
861
+ \begin{Shaded}
862
+ \begin{Highlighting}[]
863
+ \NormalTok{df }\OperatorTok{=} \ConstantTok{R}\AttributeTok{.data\_\_frame}\NormalTok{(}\WarningTok{x:}\NormalTok{ (}\DecValTok{1}\OperatorTok{..}\DecValTok{3}\NormalTok{), }\WarningTok{y:}\NormalTok{ (}\DecValTok{3}\OperatorTok{..}\DecValTok{1}\NormalTok{))}
864
+ \FunctionTok{puts}\NormalTok{ df}
865
+ \end{Highlighting}
866
+ \end{Shaded}
867
+
868
+ \begin{verbatim}
869
+ ## x y
870
+ ## 1 1 3
871
+ ## 2 2 2
872
+ ## 3 3 1
873
+ \end{verbatim}
874
+
875
+ \emph{dplyr} provides the `filter' function, that filters data in a data
876
+ brame. The `filter' function can be called on this data frame either by
877
+ using `R.filter(df, \ldots)' or by using dot notation.
878
+
879
+ -------FIX---------
880
+
881
+ We prefer to use dot notation as shown below. The argument to `filter'
882
+ should be an expression. Note that if we gave to filter a Ruby
883
+ expression such as `x == 1', we would get an error, since there is no
884
+ variable `x' defined and if `x' was a variable then `x == 1' would
885
+ either be `true' or `false'. Our goal is to filter our data frame
886
+ returning all rows in which the `x' value is equal to 1. To express this
887
+ we want: `R{[}:x{]}.eq 1', where :x will be interpreted by filter as the
888
+ `x' column.
889
+
890
+ \begin{Shaded}
891
+ \begin{Highlighting}[]
892
+ \FunctionTok{puts}\NormalTok{ df}\AttributeTok{.filter}\NormalTok{(}\ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}\AttributeTok{.eq} \DecValTok{1}\NormalTok{)}
893
+ \end{Highlighting}
894
+ \end{Shaded}
895
+
896
+ \begin{verbatim}
897
+ ## x y
898
+ ## 1 1 3
899
+ \end{verbatim}
900
+
901
+ In R, and when coding with `tidyverse', arguments to a function are
902
+ usually not \emph{referencially transparent}. That is, you can't replace
903
+ a value with a seemingly equivalent object that you've defined
904
+ elsewhere. In other words, this code
905
+
906
+ \begin{Shaded}
907
+ \begin{Highlighting}[]
908
+ \NormalTok{my\_var }\OtherTok{\textless{}{-}}\NormalTok{ x}
909
+ \FunctionTok{filter}\NormalTok{(df, my\_var }\SpecialCharTok{==} \DecValTok{1}\NormalTok{)}
910
+ \end{Highlighting}
911
+ \end{Shaded}
912
+
913
+ Generates the following error: ``object `x' not found.
914
+
915
+ However, in Galaaz, arguments are referencially transparent as can be
916
+ seen by the code below. Note initially that `my\_var = R{[}:x{]}' will
917
+ not give the error ``object `x' not found'' since `:x' is treated as an
918
+ expression and assigned to my\_var. Then when doing (my\_var.eq 1),
919
+ my\_var is a variable that resolves to `:x' and it becomes equivalent to
920
+ (R{[}:x{]}.eq 1) which is what we want.
921
+
922
+ \begin{Shaded}
923
+ \begin{Highlighting}[]
924
+ \NormalTok{my\_var }\OperatorTok{=} \ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}
925
+ \FunctionTok{puts}\NormalTok{ df}\AttributeTok{.filter}\NormalTok{(my\_var}\AttributeTok{.eq} \DecValTok{1}\NormalTok{)}
926
+ \end{Highlighting}
927
+ \end{Shaded}
928
+
929
+ \begin{verbatim}
930
+ ## x y
931
+ ## 1 1 3
932
+ \end{verbatim}
933
+
934
+ As stated by Hadley
935
+
936
+ \begin{quote}
937
+ dplyr code is ambiguous. Depending on what variables are defined where,
938
+ filter(df, x == y) could be equivalent to any of:
939
+ \end{quote}
940
+
941
+ \begin{verbatim}
942
+ df[df$x == df$y, ]
943
+ df[df$x == y, ]
944
+ df[x == df$y, ]
945
+ df[x == y, ]
946
+ \end{verbatim}
947
+
948
+ In galaaz this ambiguity does not exist, filter(df, x.eq y) is not a
949
+ valid expression as expressions are build with symbols. In doing
950
+ filter(df, R{[}:x{]}.eq y) we are looking for elements of the `x' column
951
+ that are equal to a previously defined y variable. Finally in filter(df,
952
+ R{[}:x{]}.eq R{[}:y{]}) we are looking for elements in which the `x'
953
+ column value is equal to the `y' column value. This can be seen in the
954
+ following two chunks of code:
955
+
956
+ \begin{Shaded}
957
+ \begin{Highlighting}[]
958
+ \NormalTok{y }\OperatorTok{=} \DecValTok{1}
959
+ \NormalTok{x }\OperatorTok{=} \DecValTok{2}
960
+
961
+ \CommentTok{\# looking for values where the \textquotesingle{}x\textquotesingle{} column is equal to the \textquotesingle{}y\textquotesingle{} column}
962
+ \FunctionTok{puts}\NormalTok{ df}\AttributeTok{.filter}\NormalTok{(}\ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}\AttributeTok{.eq} \ConstantTok{R}\KeywordTok{[}\WarningTok{:y}\KeywordTok{]}\NormalTok{)}
963
+ \end{Highlighting}
964
+ \end{Shaded}
965
+
966
+ \begin{verbatim}
967
+ ## x y
968
+ ## 1 2 2
969
+ \end{verbatim}
970
+
971
+ \begin{Shaded}
972
+ \begin{Highlighting}[]
973
+ \CommentTok{\# looking for values where the \textquotesingle{}x\textquotesingle{} column is equal to the \textquotesingle{}y\textquotesingle{} variable}
974
+ \CommentTok{\# in this case, the number 1}
975
+ \FunctionTok{puts}\NormalTok{ df}\AttributeTok{.filter}\NormalTok{(}\ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}\AttributeTok{.eq}\NormalTok{ y)}
976
+ \end{Highlighting}
977
+ \end{Shaded}
978
+
979
+ \begin{verbatim}
980
+ ## x y
981
+ ## 1 1 3
982
+ \end{verbatim}
983
+
984
+ \subsection{Writing a function that applies to different data
985
+ sets}\label{writing-a-function-that-applies-to-different-data-sets}
986
+
987
+ Let's suppose that we want to write a function that receives as the
988
+ first argument a data frame and as second argument an expression that
989
+ adds a column to the data frame that is equal to the sum of elements in
990
+ column `a' plus `x'.
991
+
992
+ Here is the intended behaviour using the `mutate' function of `dplyr':
993
+
994
+ \begin{verbatim}
995
+ mutate(df1, y = a + x)
996
+ mutate(df2, y = a + x)
997
+ mutate(df3, y = a + x)
998
+ mutate(df4, y = a + x)
999
+ \end{verbatim}
1000
+
1001
+ The naive approach to writing an R function to solve this problem is:
1002
+
1003
+ \begin{verbatim}
1004
+ mutate_y <- function(df) {
1005
+ mutate(df, y = a + x)
1006
+ }
1007
+ \end{verbatim}
1008
+
1009
+ Unfortunately, in R, this function can fail silently if one of the
1010
+ variables isn't present in the data frame, but is present in the global
1011
+ environment. We will not go through here how to solve this problem in R.
1012
+
1013
+ In Galaaz the method mutate\_y below will work fine and will never fail
1014
+ silently.
1015
+
1016
+ \begin{Shaded}
1017
+ \begin{Highlighting}[]
1018
+ \ControlFlowTok{def}\NormalTok{ mutate\_y(df)}
1019
+ \CommentTok{\# Column names are Ruby kwargs (y: …).}
1020
+ \CommentTok{\# Use .assign only for R \textasciigrave{}\textless{}{-}\textasciigrave{} expressions.}
1021
+ \NormalTok{ df}\AttributeTok{.mutate}\NormalTok{(}\WarningTok{y:} \ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{+} \ConstantTok{R}\KeywordTok{[}\WarningTok{:x}\KeywordTok{]}\NormalTok{)}
1022
+ \ControlFlowTok{end}
1023
+ \end{Highlighting}
1024
+ \end{Shaded}
1025
+
1026
+ Here we create a data frame that has only one column named `x':
1027
+
1028
+ \begin{Shaded}
1029
+ \begin{Highlighting}[]
1030
+ \NormalTok{df1 }\OperatorTok{=} \ConstantTok{R}\AttributeTok{.data\_\_frame}\NormalTok{(}\WarningTok{x:}\NormalTok{ (}\DecValTok{1}\OperatorTok{..}\DecValTok{3}\NormalTok{))}
1031
+ \FunctionTok{puts}\NormalTok{ df1}
1032
+ \end{Highlighting}
1033
+ \end{Shaded}
1034
+
1035
+ \begin{verbatim}
1036
+ ## x
1037
+ ## 1 1
1038
+ ## 2 2
1039
+ ## 3 3
1040
+ \end{verbatim}
1041
+
1042
+ Note that method mutate\_y will fail independetly from the fact that
1043
+ variable `a' is defined and in the scope of the method. Variable `a' has
1044
+ no relationship with the symbol \texttt{R{[}:a{]}} used in the
1045
+ definition of `mutate\_y' above:
1046
+
1047
+ \begin{Shaded}
1048
+ \begin{Highlighting}[]
1049
+ \NormalTok{a }\OperatorTok{=} \DecValTok{10}
1050
+ \ControlFlowTok{begin}
1051
+ \NormalTok{ mutate\_y(df1)}
1052
+ \ControlFlowTok{rescue} \OperatorTok{=\textgreater{}}\NormalTok{ e}
1053
+ \CommentTok{\# Short message only — full backtraces overflow PDF code boxes.}
1054
+ \FunctionTok{puts} \StringTok{"}\SpecialCharTok{\#\{}\NormalTok{e}\AttributeTok{.class}\SpecialCharTok{\}}\StringTok{: }\SpecialCharTok{\#\{}\NormalTok{e}\AttributeTok{.message}\SpecialCharTok{\}}\StringTok{"}
1055
+ \ControlFlowTok{end}
1056
+ \end{Highlighting}
1057
+ \end{Shaded}
1058
+
1059
+ \begin{verbatim}
1060
+ ## NewBridge::SessionClient::RProcessError: Error: i In argument: `y = a + x`.
1061
+ ## Caused by error:
1062
+ ## ! object 'a' not found
1063
+ \end{verbatim}
1064
+
1065
+ \subsection{Different expressions}\label{different-expressions}
1066
+
1067
+ Let's move to the next problem as presented by Hadley where trying to
1068
+ write a function in R that will receive two argumens, the first a
1069
+ variable and the second an expression is not trivial. Below we create a
1070
+ data frame and we want to write a function that groups data by a
1071
+ variable and summarises it by an expression:
1072
+
1073
+ \begin{Shaded}
1074
+ \begin{Highlighting}[]
1075
+ \FunctionTok{set.seed}\NormalTok{(}\DecValTok{123}\NormalTok{)}
1076
+
1077
+ \NormalTok{df }\OtherTok{\textless{}{-}} \FunctionTok{data.frame}\NormalTok{(}
1078
+ \AttributeTok{g1 =} \FunctionTok{c}\NormalTok{(}\DecValTok{1}\NormalTok{, }\DecValTok{1}\NormalTok{, }\DecValTok{2}\NormalTok{, }\DecValTok{2}\NormalTok{, }\DecValTok{2}\NormalTok{),}
1079
+ \AttributeTok{g2 =} \FunctionTok{c}\NormalTok{(}\DecValTok{1}\NormalTok{, }\DecValTok{2}\NormalTok{, }\DecValTok{1}\NormalTok{, }\DecValTok{2}\NormalTok{, }\DecValTok{1}\NormalTok{),}
1080
+ \AttributeTok{a =} \FunctionTok{sample}\NormalTok{(}\DecValTok{5}\NormalTok{),}
1081
+ \AttributeTok{b =} \FunctionTok{sample}\NormalTok{(}\DecValTok{5}\NormalTok{)}
1082
+ \NormalTok{)}
1083
+
1084
+ \FunctionTok{as.data.frame}\NormalTok{(df)}
1085
+ \end{Highlighting}
1086
+ \end{Shaded}
1087
+
1088
+ \begin{verbatim}
1089
+ ## g1 g2 a b
1090
+ ## 1 1 1 3 3
1091
+ ## 2 1 2 2 1
1092
+ ## 3 2 1 5 2
1093
+ ## 4 2 2 4 5
1094
+ ## 5 2 1 1 4
1095
+ \end{verbatim}
1096
+
1097
+ \begin{Shaded}
1098
+ \begin{Highlighting}[]
1099
+ \NormalTok{d2 }\OtherTok{\textless{}{-}}\NormalTok{ df }\SpecialCharTok{\%\textgreater{}\%}
1100
+ \FunctionTok{group\_by}\NormalTok{(g1) }\SpecialCharTok{\%\textgreater{}\%}
1101
+ \FunctionTok{summarise}\NormalTok{(}\AttributeTok{a =} \FunctionTok{mean}\NormalTok{(a))}
1102
+
1103
+ \FunctionTok{as.data.frame}\NormalTok{(d2)}
1104
+ \end{Highlighting}
1105
+ \end{Shaded}
1106
+
1107
+ \begin{verbatim}
1108
+ ## g1 a
1109
+ ## 1 1 2.500000
1110
+ ## 2 2 3.333333
1111
+ \end{verbatim}
1112
+
1113
+ \begin{Shaded}
1114
+ \begin{Highlighting}[]
1115
+ \NormalTok{d2 }\OtherTok{\textless{}{-}}\NormalTok{ df }\SpecialCharTok{\%\textgreater{}\%}
1116
+ \FunctionTok{group\_by}\NormalTok{(g2) }\SpecialCharTok{\%\textgreater{}\%}
1117
+ \FunctionTok{summarise}\NormalTok{(}\AttributeTok{a =} \FunctionTok{mean}\NormalTok{(a))}
1118
+
1119
+ \FunctionTok{as.data.frame}\NormalTok{(d2) }
1120
+ \end{Highlighting}
1121
+ \end{Shaded}
1122
+
1123
+ \begin{verbatim}
1124
+ ## g2 a
1125
+ ## 1 1 3
1126
+ ## 2 2 3
1127
+ \end{verbatim}
1128
+
1129
+ As shown by Hadley, one might expect this function to do the trick:
1130
+
1131
+ \begin{Shaded}
1132
+ \begin{Highlighting}[]
1133
+ \NormalTok{my\_summarise }\OtherTok{\textless{}{-}} \ControlFlowTok{function}\NormalTok{(df, group\_var) \{}
1134
+ \NormalTok{ df }\SpecialCharTok{\%\textgreater{}\%}
1135
+ \FunctionTok{group\_by}\NormalTok{(group\_var) }\SpecialCharTok{\%\textgreater{}\%}
1136
+ \FunctionTok{summarise}\NormalTok{(}\AttributeTok{a =} \FunctionTok{mean}\NormalTok{(a))}
1137
+ \NormalTok{\}}
1138
+
1139
+ \CommentTok{\# my\_summarise(df, g1)}
1140
+ \CommentTok{\#\textgreater{} Error: Column \textasciigrave{}group\_var\textasciigrave{} is unknown}
1141
+ \end{Highlighting}
1142
+ \end{Shaded}
1143
+
1144
+ In order to solve this problem, coding with dplyr requires the
1145
+ introduction of many new concepts and functions such as `quo', `quos',
1146
+ `enquo', `enquos', `!!' (bang bang), `!!!' (triple bang). Again, we'll
1147
+ leave to Hadley the explanation on how to use all those functions.
1148
+
1149
+ Now, let's try to implement the same function in galaaz. The next code
1150
+ block first prints the `df' data frame defined previously in R (to
1151
+ access an R variable from Galaaz, we use the tilde operator
1152
+ `\textasciitilde{}' applied to the R variable name as symbol, i.e.,
1153
+ `:df'. We then create the `my\_summarize' method and call it passing the
1154
+ R data frame and the group by variable `:g1':
1155
+
1156
+ \begin{Shaded}
1157
+ \begin{Highlighting}[]
1158
+ \FunctionTok{puts} \OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}
1159
+ \FunctionTok{print} \StringTok{"}
1160
+ \StringTok{"}
1161
+
1162
+ \ControlFlowTok{def}\NormalTok{ my\_summarize(df, group\_var)}
1163
+ \NormalTok{ df}\AttributeTok{.group\_by}\NormalTok{(group\_var)}\AttributeTok{.}
1164
+ \AttributeTok{summarize}\NormalTok{(}\WarningTok{a:} \ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]}\AttributeTok{.mean}\NormalTok{)}
1165
+ \ControlFlowTok{end}
1166
+
1167
+ \FunctionTok{puts}\NormalTok{ my\_summarize(}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}\NormalTok{, }\ConstantTok{R}\KeywordTok{[}\WarningTok{:g1}\KeywordTok{]}\NormalTok{)}
1168
+ \end{Highlighting}
1169
+ \end{Shaded}
1170
+
1171
+ \begin{verbatim}
1172
+ ## g1 g2 a b
1173
+ ## 1 1 1 3 3
1174
+ ## 2 1 2 2 1
1175
+ ## 3 2 1 5 2
1176
+ ## 4 2 2 4 5
1177
+ ## 5 2 1 1 4
1178
+ ##
1179
+ ## # A tibble: 2 x 2
1180
+ ## g1 a
1181
+ ## <dbl> <dbl>
1182
+ ## 1 1 2.5
1183
+ ## 2 2 3.33
1184
+ \end{verbatim}
1185
+
1186
+ It works!!! Well, let's make sure this was not just some coincidence
1187
+
1188
+ \begin{Shaded}
1189
+ \begin{Highlighting}[]
1190
+ \FunctionTok{puts}\NormalTok{ my\_summarize(}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}\NormalTok{, }\ConstantTok{R}\KeywordTok{[}\WarningTok{:g2}\KeywordTok{]}\NormalTok{)}
1191
+ \end{Highlighting}
1192
+ \end{Shaded}
1193
+
1194
+ \begin{verbatim}
1195
+ ## # A tibble: 2 x 2
1196
+ ## g2 a
1197
+ ## <dbl> <dbl>
1198
+ ## 1 1 3
1199
+ ## 2 2 3
1200
+ \end{verbatim}
1201
+
1202
+ Great, everything is fine! No magic, no new functions, no complexities,
1203
+ just normal, standard Ruby code. If you've ever done NSE in R, this
1204
+ certainly feels much safer and easy to implement.
1205
+
1206
+ \subsection{Different input variables}\label{different-input-variables}
1207
+
1208
+ In the previous section we've managed to get rid of all NSE formulation
1209
+ for a simple example, but does this remain true for more complex
1210
+ examples, or will the Galaaz way prove inpractical for more complex
1211
+ code?
1212
+
1213
+ In the next example Hadley proposes us to write a function that given an
1214
+ expression such as `a' or `a * b', calculates three summaries. What we
1215
+ want a function that does the same as these R statements:
1216
+
1217
+ \begin{verbatim}
1218
+ summarise(df, mean = mean(a), sum = sum(a), n = n())
1219
+ #> # A tibble: 1 x 3
1220
+ #> mean sum n
1221
+ #> <dbl> <int> <int>
1222
+ #> 1 3 15 5
1223
+
1224
+ summarise(df, mean = mean(a * b), sum = sum(a * b), n = n())
1225
+ #> # A tibble: 1 x 3
1226
+ #> mean sum n
1227
+ #> <dbl> <int> <int>
1228
+ #> 1 9 45 5
1229
+ \end{verbatim}
1230
+
1231
+ Let's try it in galaaz:
1232
+
1233
+ \begin{Shaded}
1234
+ \begin{Highlighting}[]
1235
+ \ControlFlowTok{def}\NormalTok{ my\_summarise2(df, expr)}
1236
+ \NormalTok{ df}\AttributeTok{.summarize}\NormalTok{(}
1237
+ \WarningTok{mean:} \ConstantTok{E}\AttributeTok{.mean}\NormalTok{(expr),}
1238
+ \WarningTok{sum:} \ConstantTok{E}\AttributeTok{.sum}\NormalTok{(expr),}
1239
+ \WarningTok{n:} \ConstantTok{E}\AttributeTok{.n}
1240
+ \NormalTok{ )}
1241
+ \ControlFlowTok{end}
1242
+
1243
+ \FunctionTok{puts}\NormalTok{ my\_summarise2((}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}\NormalTok{), }\WarningTok{:a}\NormalTok{)}
1244
+ \FunctionTok{puts}\NormalTok{ my\_summarise2((}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}\NormalTok{), }\ConstantTok{R}\KeywordTok{[}\WarningTok{:a}\KeywordTok{]} \OperatorTok{*} \ConstantTok{R}\KeywordTok{[}\WarningTok{:b}\KeywordTok{]}\NormalTok{)}
1245
+ \end{Highlighting}
1246
+ \end{Shaded}
1247
+
1248
+ \begin{verbatim}
1249
+ ## mean sum n
1250
+ ## 1 3 15 5
1251
+ ## mean sum n
1252
+ ## 1 9 45 5
1253
+ \end{verbatim}
1254
+
1255
+ Once again, there is no need to use any special theory or functions. The
1256
+ only point to be careful about is the use of `E' to build expressions
1257
+ from functions `mean', `sum' and `n'.
1258
+
1259
+ \subsection{Different input and output
1260
+ variable}\label{different-input-and-output-variable}
1261
+
1262
+ Now the next challenge presented by Hadley is to vary the name of the
1263
+ output variables based on the received expression. So, if the input
1264
+ expression is `a', we want our data frame columns to be named `mean\_a'
1265
+ and `sum\_a'. Now, if the input expression is `b', columns should be
1266
+ named `mean\_b' and `sum\_b'.
1267
+
1268
+ \begin{verbatim}
1269
+ mutate(df, mean_a = mean(a), sum_a = sum(a))
1270
+ #> # A tibble: 5 x 6
1271
+ #> g1 g2 a b mean_a sum_a
1272
+ #> <dbl> <dbl> <int> <int> <dbl> <int>
1273
+ #> 1 1 1 1 3 3 15
1274
+ #> 2 1 2 4 2 3 15
1275
+ #> 3 2 1 2 1 3 15
1276
+ #> 4 2 2 5 4 3 15
1277
+ #> # … with 1 more row
1278
+
1279
+ mutate(df, mean_b = mean(b), sum_b = sum(b))
1280
+ #> # A tibble: 5 x 6
1281
+ #> g1 g2 a b mean_b sum_b
1282
+ #> <dbl> <dbl> <int> <int> <dbl> <int>
1283
+ #> 1 1 1 1 3 3 15
1284
+ #> 2 1 2 4 2 3 15
1285
+ #> 3 2 1 2 1 3 15
1286
+ #> 4 2 2 5 4 3 15
1287
+ #> # … with 1 more row
1288
+ \end{verbatim}
1289
+
1290
+ In order to solve this problem in R, Hadley needs to introduce some more
1291
+ new functions and notations: `quo\_name' and the `:=' operator from
1292
+ package `rlang'
1293
+
1294
+ Here is our Ruby code:
1295
+
1296
+ \begin{Shaded}
1297
+ \begin{Highlighting}[]
1298
+ \ControlFlowTok{def}\NormalTok{ my\_mutate(df, expr)}
1299
+ \NormalTok{ mean\_name }\OperatorTok{=} \StringTok{"mean\_}\SpecialCharTok{\#\{}\NormalTok{expr}\AttributeTok{.to\_s}\SpecialCharTok{\}}\StringTok{"}
1300
+ \NormalTok{ sum\_name }\OperatorTok{=} \StringTok{"sum\_}\SpecialCharTok{\#\{}\NormalTok{expr}\AttributeTok{.to\_s}\SpecialCharTok{\}}\StringTok{"}
1301
+
1302
+ \NormalTok{ df}\AttributeTok{.mutate}\NormalTok{(mean\_name }\OperatorTok{=\textgreater{}} \ConstantTok{E}\AttributeTok{.mean}\NormalTok{(expr),}
1303
+ \NormalTok{ sum\_name }\OperatorTok{=\textgreater{}} \ConstantTok{E}\AttributeTok{.sum}\NormalTok{(expr))}
1304
+ \ControlFlowTok{end}
1305
+
1306
+ \FunctionTok{puts}\NormalTok{ my\_mutate((}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}\NormalTok{), }\WarningTok{:a}\NormalTok{)}
1307
+ \FunctionTok{puts}\NormalTok{ my\_mutate((}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}\NormalTok{), }\WarningTok{:b}\NormalTok{)}
1308
+ \end{Highlighting}
1309
+ \end{Shaded}
1310
+
1311
+ \begin{verbatim}
1312
+ ## g1 g2 a b mean_a sum_a
1313
+ ## 1 1 1 3 3 3 15
1314
+ ## 2 1 2 2 1 3 15
1315
+ ## 3 2 1 5 2 3 15
1316
+ ## 4 2 2 4 5 3 15
1317
+ ## 5 2 1 1 4 3 15
1318
+ ## g1 g2 a b mean_b sum_b
1319
+ ## 1 1 1 3 3 3 15
1320
+ ## 2 1 2 2 1 3 15
1321
+ ## 3 2 1 5 2 3 15
1322
+ ## 4 2 2 4 5 3 15
1323
+ ## 5 2 1 1 4 3 15
1324
+ \end{verbatim}
1325
+
1326
+ It really seems that ``Non Standard Evaluation'' is actually quite
1327
+ standard in Galaaz! But, you might have noticed a small change in the
1328
+ way the arguments to the mutate method were called. In a previous
1329
+ example we used df.summarise(mean: E.mean(:a), \ldots) where the column
1330
+ name was followed by a `:' colom. In this example, we have
1331
+ df.mutate(mean\_name =\textgreater{} E.mean(expr), \ldots) and variable
1332
+ mean\_name is not followed by `:' but by `=\textgreater{}'. This is
1333
+ standard Ruby notation.
1334
+
1335
+ {[}explain\ldots.{]}
1336
+
1337
+ \subsection{Capturing multiple
1338
+ variables}\label{capturing-multiple-variables}
1339
+
1340
+ Moving on with new complexities, Hadley proposes us to solve the problem
1341
+ in which the summarise function will receive any number of grouping
1342
+ variables.
1343
+
1344
+ This again is quite standard Ruby. In order to receive an undefined
1345
+ number of paramenters the paramenter is preceded by '*':
1346
+
1347
+ \begin{Shaded}
1348
+ \begin{Highlighting}[]
1349
+ \ControlFlowTok{def}\NormalTok{ my\_summarise3(df, }\OperatorTok{*}\NormalTok{group\_vars)}
1350
+ \NormalTok{ df}\AttributeTok{.group\_by}\NormalTok{(}\OperatorTok{*}\NormalTok{group\_vars)}\AttributeTok{.}
1351
+ \AttributeTok{summarise}\NormalTok{(}\WarningTok{a:} \ConstantTok{E}\AttributeTok{.mean}\NormalTok{(}\WarningTok{:a}\NormalTok{))}
1352
+ \ControlFlowTok{end}
1353
+
1354
+ \FunctionTok{puts}\NormalTok{ my\_summarise3((}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:df}\KeywordTok{]}\NormalTok{), }\WarningTok{:g1}\NormalTok{, }\WarningTok{:g2}\NormalTok{)}
1355
+ \end{Highlighting}
1356
+ \end{Shaded}
1357
+
1358
+ \begin{verbatim}
1359
+ ## # A tibble: 4 x 3
1360
+ ## # Groups: g1 [2]
1361
+ ## g1 g2 a
1362
+ ## <dbl> <dbl> <dbl>
1363
+ ## 1 1 1 3
1364
+ ## 2 1 2 2
1365
+ ## 3 2 1 3
1366
+ ## 4 2 2 4
1367
+ \end{verbatim}
1368
+
1369
+ \section{Why does R require NSE and Galaaz does
1370
+ not?}\label{why-does-r-require-nse-and-galaaz-does-not}
1371
+
1372
+ NSE introduces a number of new concepts, such as `quoting',
1373
+ `quasiquotation', `unquoting' and `unquote-splicing', while in Galaaz
1374
+ none of those concepts are needed. What gives?
1375
+
1376
+ R is an extremely flexible language and it has lazy evaluation of
1377
+ parameters. When in R a function is called as `summarise(df, a = b)',
1378
+ the summarise function receives the litteral `a = b' parameter and can
1379
+ work with this as if it were a string. In R, it is not clear what a and
1380
+ b are, they can be expressions or they can be variables, it is up to the
1381
+ function to decide what `a = b' means.
1382
+
1383
+ In Ruby, there is no lazy evaluation of parameters and `a' is always a
1384
+ variable and so is `b'. Variables assume their value as soon as they are
1385
+ used, so `x = a' is immediately evaluate and variable `x' will receive
1386
+ the value of variable `a' as soon as the Ruby statement is executed.
1387
+ Ruby also provides the notion of a symbol; `:a' is a symbol and does not
1388
+ evaluate to anything. Galaaz uses Ruby symbols to build expressions that
1389
+ are not bound to anything: `R{[}:a{]}.eq R{[}:b{]}' is clearly an
1390
+ expression and has no relationship whatsoever with the statment `a = b'.
1391
+ By using symbols, variables and expressions all the possible ambiguities
1392
+ that are found in R are eliminated in Galaaz.
1393
+
1394
+ The main problem that remains, is that in R, functions are not clearly
1395
+ documented as what type of input they are expecting, they might be
1396
+ expecting regular variables or they might be expecting expressions and
1397
+ the R function will know how to deal with an input of the form `a = b',
1398
+ now for the Ruby developer it might not be immediately clear if it
1399
+ should call the function passing the value `true' if variable `a' is
1400
+ equal to variable `b' or if it should call the function passing the
1401
+ expression `R{[}:a{]}.eq R{[}:b{]}'.
1402
+
1403
+ \section{Advanced dplyr features}\label{advanced-dplyr-features}
1404
+
1405
+ In the blog:
1406
+ \href{https://www.r-bloggers.com/programming-with-dplyr-by-using-dplyr/}{Programming
1407
+ with dplyr by using dplyr} Iñaki Úcar shows surprise that some R users
1408
+ are trying to code in dplyr avoiding the use of NSE. For instance he
1409
+ says:
1410
+
1411
+ \begin{quote}
1412
+ Take the example of seplyr. It stands for standard evaluation dplyr, and
1413
+ enables us to program over dplyr without having ``to bring in (or study)
1414
+ any deep-theory or heavy-weight tools such as rlang/tidyeval''.
1415
+ \end{quote}
1416
+
1417
+ For me, there isn't really any surprise that users are trying to avoid
1418
+ dplyr deep-theory. R users frequently are not programmers and learning
1419
+ to code is already hard business, on top of that, having to learn how to
1420
+ `quote' or `enquo' or `quos' or `enquos' is not necessarily a `piece of
1421
+ cake'. So much so, that `tidyeval' has some more advanced functions that
1422
+ instead of using quoted expressions, uses strings as arguments.
1423
+
1424
+ In the following examples, we show the use of functions `group\_by\_at',
1425
+ `summarise\_at' and `rename\_at' that receive strings as argument. The
1426
+ data frame used in `starwars' that describes features of characters in
1427
+ the Starwars movies:
1428
+
1429
+ \begin{Shaded}
1430
+ \begin{Highlighting}[]
1431
+ \FunctionTok{puts}\NormalTok{ (}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:starwars}\KeywordTok{]}\NormalTok{)}\AttributeTok{.head}
1432
+ \end{Highlighting}
1433
+ \end{Shaded}
1434
+
1435
+ \begin{verbatim}
1436
+ ## # A tibble: 6 x 14
1437
+ ## name height mass hair_color skin_color eye_color birth_year sex
1438
+ ## <chr> <int> <dbl> <chr> <chr> <chr> <dbl> <chr>
1439
+ ## 1 Luke ~ 172 77 blond fair blue 19 male
1440
+ ## 2 C-3PO 167 75 <NA> gold yellow 112 none
1441
+ ## 3 R2-D2 96 32 <NA> white, bl~ red 33 none
1442
+ ## 4 Darth~ 202 136 none white yellow 41.9 male
1443
+ ## 5 Leia ~ 150 49 brown light brown 19 fema~
1444
+ ## 6 Owen ~ 178 120 brown, gr~ light blue 52 male
1445
+ ## # i 6 more variables: gender <chr>, homeworld <chr>, species <chr>,
1446
+ ## # films <list>, vehicles <list>, starships <list>
1447
+ \end{verbatim}
1448
+
1449
+ The grouped\_mean function below will receive a grouping variable and
1450
+ calculate summaries for the value\_variables given:
1451
+
1452
+ \begin{Shaded}
1453
+ \begin{Highlighting}[]
1454
+ \NormalTok{grouped\_mean }\OtherTok{\textless{}{-}} \ControlFlowTok{function}\NormalTok{(data, grouping\_variables, value\_variables) \{}
1455
+ \NormalTok{ data }\SpecialCharTok{\%\textgreater{}\%}
1456
+ \FunctionTok{group\_by\_at}\NormalTok{(grouping\_variables) }\SpecialCharTok{\%\textgreater{}\%}
1457
+ \FunctionTok{mutate}\NormalTok{(}\AttributeTok{count =} \FunctionTok{n}\NormalTok{()) }\SpecialCharTok{\%\textgreater{}\%}
1458
+ \FunctionTok{summarise\_at}\NormalTok{(}\FunctionTok{c}\NormalTok{(value\_variables, }\StringTok{"count"}\NormalTok{), mean, }\AttributeTok{na.rm =} \ConstantTok{TRUE}\NormalTok{) }\SpecialCharTok{\%\textgreater{}\%}
1459
+ \FunctionTok{rename\_at}\NormalTok{(value\_variables, }\FunctionTok{funs}\NormalTok{(}\FunctionTok{paste0}\NormalTok{(}\StringTok{"mean\_"}\NormalTok{, .)))}
1460
+ \NormalTok{ \}}
1461
+
1462
+ \NormalTok{gm }\OtherTok{=}\NormalTok{ starwars }\SpecialCharTok{\%\textgreater{}\%}
1463
+ \FunctionTok{grouped\_mean}\NormalTok{(}\StringTok{"eye\_color"}\NormalTok{, }\FunctionTok{c}\NormalTok{(}\StringTok{"mass"}\NormalTok{, }\StringTok{"birth\_year"}\NormalTok{))}
1464
+ \end{Highlighting}
1465
+ \end{Shaded}
1466
+
1467
+ \begin{verbatim}
1468
+ ## Warning: `funs()` was deprecated in dplyr 0.8.0.
1469
+ ## i Please use a list of either functions or lambdas:
1470
+ ##
1471
+ ## # Simple named list: list(mean = mean, median = median)
1472
+ ##
1473
+ ## # Auto named with `tibble::lst()`: tibble::lst(mean, median)
1474
+ ##
1475
+ ## # Using lambdas list(~ mean(., trim = .2), ~ median(., na.rm = TRUE))
1476
+ ## Call `lifecycle::last_lifecycle_warnings()` to see where this warning
1477
+ ## was generated.
1478
+ \end{verbatim}
1479
+
1480
+ \begin{Shaded}
1481
+ \begin{Highlighting}[]
1482
+ \FunctionTok{as.data.frame}\NormalTok{(gm) }
1483
+ \end{Highlighting}
1484
+ \end{Shaded}
1485
+
1486
+ \begin{verbatim}
1487
+ ## eye_color mean_mass mean_birth_year count
1488
+ ## 1 black 76.28571 33.00000 10
1489
+ ## 2 blue 86.51667 67.06923 19
1490
+ ## 3 blue-gray 77.00000 57.00000 1
1491
+ ## 4 brown 66.09231 108.96429 21
1492
+ ## 5 dark NaN NaN 1
1493
+ ## 6 gold NaN NaN 1
1494
+ ## 7 green, yellow 159.00000 NaN 1
1495
+ ## 8 hazel 66.00000 34.50000 3
1496
+ ## 9 orange 282.33333 231.00000 8
1497
+ ## 10 pink NaN NaN 1
1498
+ ## 11 red 81.40000 33.66667 5
1499
+ ## 12 red, blue NaN NaN 1
1500
+ ## 13 unknown 31.50000 NaN 3
1501
+ ## 14 white 48.00000 NaN 1
1502
+ ## 15 yellow 81.11111 76.38000 11
1503
+ \end{verbatim}
1504
+
1505
+ The same code with Galaaz, becomes:
1506
+
1507
+ \begin{Shaded}
1508
+ \begin{Highlighting}[]
1509
+ \ControlFlowTok{def}\NormalTok{ grouped\_mean(data, grouping\_variables, value\_variables)}
1510
+ \NormalTok{ data}\AttributeTok{.}
1511
+ \AttributeTok{group\_by\_at}\NormalTok{(grouping\_variables)}\AttributeTok{.}
1512
+ \AttributeTok{mutate}\NormalTok{(}\WarningTok{count:} \ConstantTok{E}\AttributeTok{.n}\NormalTok{)}\AttributeTok{.}
1513
+ \AttributeTok{summarise\_at}\NormalTok{(}
1514
+ \ConstantTok{E}\AttributeTok{.c}\NormalTok{(value\_variables, }\StringTok{"count"}\NormalTok{),}
1515
+ \ConstantTok{R}\KeywordTok{[}\WarningTok{:mean}\KeywordTok{]}\NormalTok{,}
1516
+ \WarningTok{na\_\_rm:} \DecValTok{true}\NormalTok{)}\AttributeTok{.}
1517
+ \AttributeTok{rename\_at}\NormalTok{(}
1518
+ \NormalTok{ value\_variables,}
1519
+ \ConstantTok{E}\AttributeTok{.funs}\NormalTok{(}\ConstantTok{E}\AttributeTok{.paste0}\NormalTok{(}\StringTok{"mean\_"}\NormalTok{, value\_variables)))}
1520
+ \ControlFlowTok{end}
1521
+
1522
+ \FunctionTok{puts}\NormalTok{ grouped\_mean(}
1523
+ \NormalTok{ (}\OperatorTok{\textasciitilde{}}\ConstantTok{R}\KeywordTok{[}\WarningTok{:starwars}\KeywordTok{]}\NormalTok{),}
1524
+ \StringTok{"eye\_color"}\NormalTok{,}
1525
+ \ConstantTok{E}\AttributeTok{.c}\NormalTok{(}\StringTok{"mass"}\NormalTok{, }\StringTok{"birth\_year"}\NormalTok{))}
1526
+ \end{Highlighting}
1527
+ \end{Shaded}
1528
+
1529
+ \begin{verbatim}
1530
+ ## # A tibble: 15 x 4
1531
+ ## eye_color mean_mass mean_birth_year count
1532
+ ## <chr> <dbl> <dbl> <dbl>
1533
+ ## 1 black 76.3 33 10
1534
+ ## 2 blue 86.5 67.1 19
1535
+ ## 3 blue-gray 77 57 1
1536
+ ## 4 brown 66.1 109. 21
1537
+ ## 5 dark NaN NaN 1
1538
+ ## 6 gold NaN NaN 1
1539
+ ## 7 green, yellow 159 NaN 1
1540
+ ## 8 hazel 66 34.5 3
1541
+ ## 9 orange 282. 231 8
1542
+ ## 10 pink NaN NaN 1
1543
+ ## 11 red 81.4 33.7 5
1544
+ ## 12 red, blue NaN NaN 1
1545
+ ## 13 unknown 31.5 NaN 3
1546
+ ## 14 white 48 NaN 1
1547
+ ## 15 yellow 81.1 76.4 11
1548
+ \end{verbatim}
1549
+
1550
+ \section{Further reading}\label{further-reading}
1551
+
1552
+ \begin{itemize}
1553
+ \tightlist
1554
+ \item
1555
+ \href{https://www.jruby.org/}{JRuby} --- Ruby on the JVM (Galaaz 2.0)
1556
+ \item
1557
+ \href{https://medium.freecodecamp.org/how-to-make-beautiful-ruby-plots-with-galaaz-320848058857}{How
1558
+ to make Beautiful Ruby Plots with Galaaz} (plots; narrative partly
1559
+ pre-2.0)
1560
+ \item
1561
+ \href{https://towardsdatascience.com/ruby-plotting-with-galaaz-an-example-of-tightly-coupling-ruby-and-r-in-graalvm-520b69e21021}{Ruby
1562
+ Plotting with Galaaz in GraalVM} (older stack; ideas still useful)
1563
+ \item
1564
+ \href{https://towardsdatascience.com/how-to-do-reproducible-research-in-ruby-with-gknit-c26d2684d64e}{How
1565
+ to do reproducible research in Ruby with gKnit}
1566
+ \item
1567
+ \href{https://r4ds.had.co.nz/}{R for Data Science}
1568
+ \item
1569
+ \href{https://adv-r.hadley.nz/}{Advanced R}
1570
+ \item
1571
+ Historical context: \href{https://www.graalvm.org/}{GraalVM},
1572
+ \href{https://github.com/oracle/truffleruby}{TruffleRuby},
1573
+ \href{https://github.com/oracle/fastr}{FastR}
1574
+ \end{itemize}
1575
+
1576
+ \section{Conclusion}\label{conclusion}
1577
+
1578
+ Ruby and Galaaz provide a nice framework for developing code that uses R
1579
+ functions. Although R is a very powerful and flexible language,
1580
+ sometimes, too much flexibility makes life harder for the casual user.
1581
+ We believe however, that even for the advanced user, Ruby integrated
1582
+ with R throught Galaaz, makes a powerful environment for data analysis.
1583
+ In this blog post we showed how Galaaz consistent syntax eliminates the
1584
+ need for complex constructs such as quoting, enquoting, quasiquotation,
1585
+ etc. This simplification comes from the fact that expressions and
1586
+ variables are clearly separated objects, which is not the case in the R
1587
+ language.
1588
+
1589
+ \end{document}