galaaz 2.0.0 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +25 -5
- data/README.md +119 -94
- data/Rakefile +17 -10
- data/bin/galaaz-jruby +3 -6
- data/bin/galaaz-ruby +16 -0
- data/bin/galaaz_ruby_env.inc.sh +36 -0
- data/bin/gbookdown +2 -3
- data/bin/gknit +2 -3
- data/bin/gstudio +4 -4
- data/bin/run_all_rspec +6 -5
- data/bin/run_example +10 -7
- data/bin/run_old_rspec +6 -5
- data/bin/run_rspec +9 -8
- data/bin/run_slow_rspec +6 -5
- data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-gfm/midwest_rb.png +0 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-gfm/scatter_plot_rb.png +0 -0
- data/blogs/gknit/gknit_files/figure-gfm/bubble-1.png +0 -0
- data/blogs/gknit/gknit_files/figure-gfm/diverging_bar.png +0 -0
- data/blogs/manual/manual.Rmd +22 -19
- data/blogs/manual/manual.md +119 -94
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/dose_len.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/facet_by_delivery.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/facet_by_dose.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/facets_by_delivery_color.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/facets_by_delivery_color2.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/facets_with_decorations.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/facets_with_jitter.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/facets_with_points.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/final_box_plot.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/final_violin_plot.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-gfm/violin_with_jitter.png +0 -0
- data/blogs/test/test.md +10 -0
- data/examples/50Plots_MasterList/ScatterPlot.rb +2 -1
- data/examples/50Plots_MasterList/scatter_plot.rb +1 -0
- data/examples/bioconductor_deseq2_airway/bench_galaaz_three_same_process.rb +1 -0
- data/examples/bioconductor_deseq2_airway/deseq2_airway_galaaz.rb +1 -0
- data/examples/bioconductor_deseq2_airway/deseq2_airway_galaaz_optimized.rb +1 -0
- data/examples/islr/all.rb +1 -0
- data/examples/islr/ch2.spec.rb +1 -0
- data/examples/islr/ch3.spec.rb +1 -0
- data/examples/islr/ch3_boston.rb +1 -0
- data/examples/islr/ch3_multiple_regression.rb +1 -0
- data/examples/islr/ch6.spec.rb +1 -0
- data/examples/islr/x_y_rnorm.jpg +0 -0
- data/examples/misc/ggplot.rb +2 -1
- data/examples/misc/moneyball.rb +1 -0
- data/examples/misc/subsetting.rb +1 -0
- data/examples/multithread_shards_to_r/shards_to_r.rb +1 -0
- data/examples/sthda_ggplot/all.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/density_gg.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_area.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_density.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_dotplot.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_freqpoly.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_histogram.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/histogram_density.rb +1 -0
- data/examples/sthda_ggplot/one_variable_continuous/stat.rb +1 -0
- data/examples/sthda_ggplot/one_variable_discrete/bar.rb +1 -0
- data/examples/sthda_ggplot/qplots/box_violin_dot.rb +1 -0
- data/examples/sthda_ggplot/qplots/scatter_plots.rb +1 -0
- data/examples/sthda_ggplot/scatter_gg.rb +1 -0
- data/examples/sthda_ggplot/two_variables_cont_bivariate/geom_bin2d.rb +1 -0
- data/examples/sthda_ggplot/two_variables_cont_bivariate/geom_density2d.rb +1 -0
- data/examples/sthda_ggplot/two_variables_cont_bivariate/geom_hex.rb +1 -0
- data/examples/sthda_ggplot/two_variables_cont_cont/geom_point.rb +1 -0
- data/examples/sthda_ggplot/two_variables_cont_cont/geom_smooth.rb +1 -0
- data/examples/sthda_ggplot/two_variables_cont_cont/misc.rb +1 -0
- data/examples/sthda_ggplot/two_variables_cont_function/geom_area.rb +1 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_bar.rb +1 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_boxplot.rb +1 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_dotplot.rb +1 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_jitter.rb +1 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_line.rb +1 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_violin.rb +1 -0
- data/examples/sthda_ggplot/two_variables_disc_disc/geom_jitter.rb +1 -0
- data/examples/sthda_ggplot/two_variables_error/geom_crossbar.rb +1 -0
- data/lib/R_interface/rvector.rb +15 -0
- data/lib/galaaz_ruby.rb +34 -0
- data/lib/new_bridge/envelope.rb +2 -2
- data/specs/gknit_include_engine_spec.rb +2 -2
- data/specs/gknit_install_timeout_report_spec.rb +2 -2
- data/specs/gknit_internal_error_report_spec.rb +2 -2
- data/specs/gknit_vector_map_output_spec.rb +2 -2
- data/version.rb +1 -1
- metadata +39 -13
metadata
CHANGED
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@@ -1,13 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: galaaz
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version: !ruby/object:Gem::Version
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version: 2.
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version: 2.1.0
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platform: ruby
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authors:
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- Rodrigo Botafogo
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2026-
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date: 2026-09-03 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: msgpack
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- !ruby/object:Gem::Version
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version: 6.1.2.1
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description: |
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Galaaz
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Galaaz is R-on-Rails: R scientists keep GNU R (CRAN / Bioconductor) for statistics and
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graphics, and use Ruby—often Rails—to put that work on the web (HTTP, auth, jobs, HTML)
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without rewriting analyses in another stack. Ruby developers also get full access to R
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libraries through the same bridge.
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Galaaz 2.0 talks to standard GNU R in a separate process. A bridge handles requests,
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results, and typing so you can drive R from Ruby (calling R functions, loading packages,
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and working with R objects). **JRuby** and **CRuby** are both supported for the same
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NewBridge protocol (tested with JRuby 10.1.1.0 + Java 21, and CRuby 3.3).
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Like RinRuby, rpy2, or reticulate, Galaaz is a cross-language bridge; unlike embedding a
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second interpreter in one VM, using GNU R means compiled R packages and Bioconductor work
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as usual. Large tables can optionally flow through Apache Arrow on the R side when you use
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the helpers described in the project documentation.
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You need
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You need JRuby or CRuby and a working GNU R installation in PATH for the bridge to run.
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Build the native gatekeeper after install with: make -C ext/new_bridge all
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email: rodrigo.a.botafogo@gmail.com
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executables:
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- galaaz
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- gstudio
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- gknit
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- gbookdown
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- grun
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- gknit-draft
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extensions: []
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extra_rdoc_files: []
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files:
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- bin/galaaz
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- bin/galaaz-bootstrap
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- bin/galaaz-jruby
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- bin/galaaz-ruby
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- bin/galaaz_jruby_env.inc.sh
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- bin/galaaz_ruby_env.inc.sh
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- bin/gbookdown
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- bin/gknit-draft
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- blogs/galaaz_ggplot/galaaz_ggplot.log
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- blogs/galaaz_ggplot/galaaz_ggplot.tex
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- blogs/galaaz_ggplot/galaaz_ggplot_files/figure-gfm/midwest_rb.png
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- blogs/galaaz_ggplot/galaaz_ggplot_files/figure-gfm/scatter_plot_rb.png
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- blogs/gknit/gknit_files/figure-gfm/bubble-1.png
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- blogs/gknit/gknit_files/figure-gfm/diverging_bar.png
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- blogs/ruby_plot/ruby_plot_files/figure-gfm/facet_by_dose.png
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- blogs/ruby_plot/ruby_plot_files/figure-gfm/facets_with_decorations.png
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- blogs/ruby_plot/ruby_plot_files/figure-gfm/facets_with_points.png
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- blogs/ruby_plot/ruby_plot_files/figure-gfm/final_box_plot.png
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- blogs/ruby_plot/ruby_plot_files/figure-gfm/violin_with_jitter.png
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documentation_uri: https://rbotafogo.github.io/galaaz/
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changelog_uri: https://github.com/rbotafogo/galaaz/blob/galaaz2_0/CHANGELOG.md
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yard.run: yri
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post_install_message:
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rdoc_options: []
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require_paths:
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version: '0'
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requirements: []
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rubygems_version: 3.5.22
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signing_key:
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specification_version: 4
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summary:
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summary: 'R-on-Rails: tightly couple Ruby and GNU R for data science on the web'
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test_files: []
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