galaaz 0.4.2 → 0.4.5

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Files changed (114) hide show
  1. checksums.yaml +4 -4
  2. data/LICENSE +25 -0
  3. data/Rakefile +8 -0
  4. data/bin/gknit +9 -5
  5. data/bin/gstudio +4 -2
  6. data/bin/gstudio.rb +32 -2
  7. data/blogs/dev/dev.html +219 -34
  8. data/blogs/dev/dev.md +26 -26
  9. data/blogs/dev/dev_files/figure-html/bubble-1.png +0 -0
  10. data/blogs/dev/dev_files/figure-html/diverging_bar.png +0 -0
  11. data/blogs/dplyr/dplyr.rb +63 -0
  12. data/blogs/galaaz_ggplot/galaaz_ggplot.Rmd +38 -26
  13. data/blogs/galaaz_ggplot/galaaz_ggplot.aux +16 -17
  14. data/blogs/galaaz_ggplot/galaaz_ggplot.pdf +0 -0
  15. data/blogs/galaaz_ggplot/galaaz_ggplot.tex +65 -31
  16. data/blogs/oh_my/not_so.rb +2342 -0
  17. data/blogs/oh_my/oh_my.Rmd +493 -0
  18. data/blogs/oh_my/oh_my.html +680 -0
  19. data/blogs/oh_my/oh_my.md +597 -0
  20. data/blogs/oh_my/old.Rmd +2100 -0
  21. data/blogs/ruby_plot/figures/facets_with_decorations.png +0 -0
  22. data/blogs/ruby_plot/figures/facets_with_jitter.png +0 -0
  23. data/blogs/ruby_plot/figures/final_box_plot.png +0 -0
  24. data/blogs/ruby_plot/figures/final_violin_plot.png +0 -0
  25. data/blogs/ruby_plot/figures/violin_with_jitter.png +0 -0
  26. data/blogs/ruby_plot/ruby_plot.Rmd +147 -122
  27. data/blogs/ruby_plot/ruby_plot.Rmd_external_figs +662 -0
  28. data/blogs/ruby_plot/ruby_plot.html +49 -54
  29. data/blogs/ruby_plot/ruby_plot.md +147 -122
  30. data/blogs/ruby_plot/ruby_plot.pdf +0 -0
  31. data/blogs/ruby_plot/ruby_plot.tex +776 -157
  32. data/blogs/ruby_plot/ruby_plot_files/figure-html/dose_len.svg +57 -0
  33. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_delivery.svg +106 -0
  34. data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_dose.svg +110 -0
  35. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color.svg +174 -0
  36. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color2.svg +236 -0
  37. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_decorations.png +0 -0
  38. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_jitter.svg +296 -0
  39. data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_points.svg +236 -0
  40. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_box_plot.svg +218 -0
  41. data/blogs/ruby_plot/ruby_plot_files/figure-html/final_violin_plot.svg +128 -0
  42. data/blogs/ruby_plot/ruby_plot_files/figure-html/violin_with_jitter.svg +150 -0
  43. data/examples/islr/ch2.spec.rb +21 -18
  44. data/examples/islr/ch3_boston.rb +14 -5
  45. data/examples/islr/ch3_multiple_regression.rb +2 -3
  46. data/examples/islr/ch6.spec.rb +1 -1
  47. data/examples/islr/x_y_rnorm.jpg +0 -0
  48. data/lib/R_interface/r.rb +14 -10
  49. data/lib/R_interface/r_libs.R +9 -0
  50. data/lib/R_interface/r_methods.rb +77 -6
  51. data/lib/R_interface/{expression.rb → r_module_s.rb} +13 -14
  52. data/lib/R_interface/rbinary_operators.rb +58 -71
  53. data/lib/R_interface/rdata_frame.rb +2 -1
  54. data/lib/R_interface/rdevices.R +4 -0
  55. data/lib/R_interface/rdevices.rb +1 -1
  56. data/lib/R_interface/renvironment.rb +34 -1
  57. data/lib/R_interface/rexpression.rb +108 -2
  58. data/lib/R_interface/rindexed_object.rb +3 -1
  59. data/lib/R_interface/rlanguage.rb +18 -2
  60. data/lib/R_interface/rmatrix.rb +14 -0
  61. data/lib/R_interface/rmd_indexed_object.rb +5 -1
  62. data/lib/R_interface/robject.rb +61 -23
  63. data/lib/R_interface/rsupport.rb +111 -53
  64. data/lib/R_interface/rsymbol.rb +6 -5
  65. data/lib/R_interface/ruby_extensions.rb +130 -4
  66. data/lib/R_interface/runary_operators.rb +35 -3
  67. data/lib/R_interface/rvector.rb +1 -0
  68. data/lib/galaaz.rb +0 -2
  69. data/lib/gknit/knitr_engine.rb +58 -4
  70. data/lib/gknit/ruby_engine.rb +5 -6
  71. data/lib/util/exec_ruby.rb +55 -9
  72. data/specs/all.rb +13 -3
  73. data/specs/figures/dose_len.png +0 -0
  74. data/specs/r_dataframe.spec.rb +49 -26
  75. data/specs/r_environment.spec.rb +140 -0
  76. data/specs/r_eval.spec.rb +0 -15
  77. data/specs/r_formula.spec.rb +232 -0
  78. data/specs/r_function.spec.rb +7 -8
  79. data/specs/r_list.spec.rb +4 -0
  80. data/specs/r_list_apply.spec.rb +11 -11
  81. data/specs/r_matrix.spec.rb +3 -3
  82. data/specs/{r_plots.spec.rb~ → r_nse.spec.rb} +29 -6
  83. data/specs/r_vector_creation.spec.rb +6 -0
  84. data/specs/r_vector_object.spec.rb +2 -2
  85. data/specs/r_vector_operators.spec.rb +3 -3
  86. data/specs/r_vector_subsetting.spec.rb +4 -4
  87. data/specs/ruby_expression.spec.rb +324 -0
  88. data/specs/tmp.rb +12 -524
  89. data/sty/galaaz.sty +71 -0
  90. data/version.rb +1 -1
  91. metadata +31 -41
  92. data/bin/gknit2~ +0 -6
  93. data/bin/ogk~ +0 -4
  94. data/bin/prepareR.rb~ +0 -1
  95. data/blogs/dev/dev.Rmd~ +0 -104
  96. data/blogs/galaaz_ggplot/galaaz_ggplot.dvi +0 -0
  97. data/blogs/galaaz_ggplot/midwest_external_png~ +0 -1
  98. data/blogs/gknit/gknit.Rmd~ +0 -184
  99. data/blogs/gknit/gknit.Rnd~ +0 -17
  100. data/blogs/gknit/model.rb~ +0 -46
  101. data/blogs/ruby_plot/ruby_plot.Rmd~ +0 -215
  102. data/examples/islr/Figure.jpg +0 -0
  103. data/examples/misc/moneyball.rb~ +0 -16
  104. data/examples/misc/subsetting.rb~ +0 -372
  105. data/lib/R/eng_ruby.R~ +0 -63
  106. data/lib/R_interface/capture_plot.rb~ +0 -23
  107. data/lib/R_interface/r.rb~ +0 -121
  108. data/lib/R_interface/rdevices.rb~ +0 -27
  109. data/lib/gknit.rb~ +0 -26
  110. data/lib/gknit/knitr_engine.rb~ +0 -102
  111. data/lib/gknit/ruby_engine.rb~ +0 -72
  112. data/lib/util/inline_file.rb~ +0 -23
  113. data/r_requires/knitr.rb~ +0 -4
  114. data/specs/r_language.spec.rb +0 -157
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+ </g><text x='267' y='477' lengthAdjust='spacingAndGlyphs' textLength='14px' style='font-size:8.0px;fill:#000080'>0.5</text>
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+ <text x='334' y='477' lengthAdjust='spacingAndGlyphs' textLength='5px' style='font-size:8.0px;fill:#000080'>1</text>
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+ <text x='18' y='377' lengthAdjust='spacingAndGlyphs' textLength='10px' style='font-size:8.0px;fill:#000080'>10</text>
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+ <text x='12' y='132' lengthAdjust='spacingAndGlyphs' textLength='81px' style='font-size:10.0px;fill:#000080;font-weight:bold' transform='rotate(-90,12,132)'>Teeth length</text>
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+ <text x='479' y='269' lengthAdjust='spacingAndGlyphs' textLength='5px' style='font-size:8.8px;fill:#000000'>1</text>
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+ <text x='479' y='292' lengthAdjust='spacingAndGlyphs' textLength='16px' style='font-size:8.8px;fill:#000000'>0.5</text>
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+ <text x='33' y='28' lengthAdjust='spacingAndGlyphs' textLength='197px' style='font-size:9.0px;fill:#000080'>Faceted by delivery method, OJ or VC</text>
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+ <text x='33' y='16' lengthAdjust='spacingAndGlyphs' textLength='386px' style='font-size:14.399999999999999px;fill:#000080;font-weight:bold'>Tooth Growth: Length vs Vitamin C Dose</text>
216
+ <text x='234' y='500' lengthAdjust='spacingAndGlyphs' textLength='202px' style='font-size:8.0px;fill:#000080'>Length of odontoblasts in 60 guinea pigs. </text>
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+ <text x='147' y='508' lengthAdjust='spacingAndGlyphs' textLength='289px' style='font-size:8.0px;fill:#000080'>Each animal received one of three dose levels of vitamin C.</text>
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