full_lengther_next 0.0.1 → 0.0.2
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- data/History.txt +4 -0
- data/bin/full_lengther_next +9 -1
- data/lib/full_lengther_next.rb +1 -1
- data/lib/full_lengther_next/classes/my_worker.rb +1 -1
- metadata +2 -2
data/History.txt
CHANGED
data/bin/full_lengther_next
CHANGED
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@@ -125,6 +125,14 @@ ROOT_PATH=File.dirname(__FILE__)
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125
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require 'full_lengther_next'
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128
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+
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129
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if ENV['FULL_LENGTHER_NEXT_INIT'] && File.exists?(ENV['FULL_LENGTHER_NEXT_INIT'])
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FULL_LENGTHER_NEXT_INIT=File.expand_path(ENV['FULL_LENGTHER_NEXT_INIT'])
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else
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FULL_LENGTHER_NEXT_INIT=File.join($ROOT_PATH,'init_env')
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end
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+
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+
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if ENV['BLASTDB'] && File.exists?(ENV['BLASTDB'])
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formatted_db_path = ENV['BLASTDB']
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else # otherwise use ROOTPATH + DB
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@@ -163,7 +171,7 @@ custom_worker_file = File.join(ROOT_PATH,'classes','my_worker.rb')
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MyWorkerManager.init_work_manager(options, options[:chunk_size])
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# Create server
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-
server = ScbiMapreduce::Manager.new(options[:server_ip],options[:port], options[:workers], MyWorkerManager,custom_worker_file, STDOUT,
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server = ScbiMapreduce::Manager.new(options[:server_ip],options[:port], options[:workers], MyWorkerManager,custom_worker_file, STDOUT,FULL_LENGTHER_NEXT_INIT)
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server.chunk_size=options[:chunk_size]
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# launch server
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server.start_server
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data/lib/full_lengther_next.rb
CHANGED
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@@ -66,7 +66,7 @@ class MyWorker < ScbiMapreduce::Worker
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user_db_name = @options[:user_db].sub(/.+\//,'')
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end
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69
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-
if !File.exists?("#{@options[:user_db]}.psq")
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69
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if !File.exists?("#{File.expand_path(@options[:user_db])}.psq")
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puts "user database: #{@options[:user_db]} was not found"
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exit
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end
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metadata
CHANGED
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@@ -2,7 +2,7 @@
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2
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name: full_lengther_next
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3
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version: !ruby/object:Gem::Version
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prerelease:
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-
version: 0.0.
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5
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version: 0.0.2
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platform: ruby
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authors:
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- Noe Fernandez & Dario Guerrero
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@@ -10,7 +10,7 @@ autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2012-02-
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+
date: 2012-02-07 00:00:00 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: xml-simple
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