fsp_harvester 0.1.2

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data/CHANGELOG.md ADDED
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+ ## [Unreleased]
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+
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+ ## [0.1.0] - 2022-07-22
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+
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+ - Initial release
data/Gemfile ADDED
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+ # frozen_string_literal: true
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+
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+ source "https://rubygems.org"
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+
5
+ # Specify your gem's dependencies in fsp_harvester.gemspec
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+ gemspec
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+ ruby '3.0.0'
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+
9
+ gem "rake", "~> 13.0"
10
+ gem "rubocop", "~> 1.7"
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+ gem "rspec", "~> 3.11"
data/Gemfile.lock ADDED
@@ -0,0 +1,319 @@
1
+ PATH
2
+ remote: .
3
+ specs:
4
+ fsp_harvester (0.1.2)
5
+ json (~> 2.0)
6
+ linkeddata (~> 3.2)
7
+ linkheaders-processor (~> 0.1.9)
8
+ metainspector (~> 5.11.2)
9
+ parseconfig (~> 1.1)
10
+ rake (~> 13.0)
11
+ rest-client (~> 2.1)
12
+ rspec (~> 3.11)
13
+ rubocop (~> 1.7)
14
+ securerandom (~> 0.1.0)
15
+ xml-simple (~> 1.1)
16
+
17
+ GEM
18
+ remote: https://rubygems.org/
19
+ specs:
20
+ addressable (2.8.0)
21
+ public_suffix (>= 2.0.2, < 5.0)
22
+ amazing_print (1.4.0)
23
+ ast (2.4.2)
24
+ bcp47 (0.3.3)
25
+ i18n
26
+ builder (3.2.4)
27
+ concurrent-ruby (1.1.10)
28
+ connection_pool (2.2.5)
29
+ diff-lcs (1.5.0)
30
+ domain_name (0.5.20190701)
31
+ unf (>= 0.0.5, < 1.0.0)
32
+ ebnf (2.3.1)
33
+ amazing_print (~> 1.4)
34
+ htmlentities (~> 4.3)
35
+ rdf (~> 3.2)
36
+ scanf (~> 1.0)
37
+ sxp (~> 1.2)
38
+ unicode-types (~> 1.7)
39
+ faraday (1.10.0)
40
+ faraday-em_http (~> 1.0)
41
+ faraday-em_synchrony (~> 1.0)
42
+ faraday-excon (~> 1.1)
43
+ faraday-httpclient (~> 1.0)
44
+ faraday-multipart (~> 1.0)
45
+ faraday-net_http (~> 1.0)
46
+ faraday-net_http_persistent (~> 1.0)
47
+ faraday-patron (~> 1.0)
48
+ faraday-rack (~> 1.0)
49
+ faraday-retry (~> 1.0)
50
+ ruby2_keywords (>= 0.0.4)
51
+ faraday-cookie_jar (0.0.7)
52
+ faraday (>= 0.8.0)
53
+ http-cookie (~> 1.0.0)
54
+ faraday-em_http (1.0.0)
55
+ faraday-em_synchrony (1.0.0)
56
+ faraday-encoding (0.0.5)
57
+ faraday
58
+ faraday-excon (1.1.0)
59
+ faraday-http-cache (2.4.0)
60
+ faraday (>= 0.8)
61
+ faraday-httpclient (1.0.1)
62
+ faraday-multipart (1.0.4)
63
+ multipart-post (~> 2)
64
+ faraday-net_http (1.0.1)
65
+ faraday-net_http_persistent (1.2.0)
66
+ faraday-patron (1.0.0)
67
+ faraday-rack (1.0.0)
68
+ faraday-retry (1.0.3)
69
+ faraday_middleware (1.2.0)
70
+ faraday (~> 1.0)
71
+ fastimage (2.2.6)
72
+ haml (5.2.2)
73
+ temple (>= 0.8.0)
74
+ tilt
75
+ hamster (3.0.0)
76
+ concurrent-ruby (~> 1.0)
77
+ htmlentities (4.3.4)
78
+ http-accept (1.7.0)
79
+ http-cookie (1.0.5)
80
+ domain_name (~> 0.5)
81
+ i18n (1.12.0)
82
+ concurrent-ruby (~> 1.0)
83
+ json (2.6.2)
84
+ json-canonicalization (0.3.0)
85
+ json-ld (3.2.1)
86
+ htmlentities (~> 4.3)
87
+ json-canonicalization (~> 0.3)
88
+ link_header (~> 0.0, >= 0.0.8)
89
+ multi_json (~> 1.15)
90
+ rack (~> 2.2)
91
+ rdf (~> 3.2)
92
+ json-ld-preloaded (3.2.0)
93
+ json-ld (~> 3.2)
94
+ rdf (~> 3.2)
95
+ ld-patch (3.2.0)
96
+ ebnf (~> 2.2)
97
+ rdf (~> 3.2)
98
+ rdf-xsd (~> 3.2)
99
+ sparql (~> 3.2)
100
+ sxp (~> 1.2)
101
+ link_header (0.0.8)
102
+ linkeddata (3.2.0)
103
+ json-ld (~> 3.2)
104
+ json-ld-preloaded (~> 3.2)
105
+ ld-patch (~> 3.2)
106
+ nokogiri (~> 1.12, >= 1.12.5)
107
+ rdf (~> 3.2)
108
+ rdf-aggregate-repo (~> 3.2)
109
+ rdf-hamster-repo (~> 3.2)
110
+ rdf-isomorphic (~> 3.2)
111
+ rdf-json (~> 3.2)
112
+ rdf-microdata (~> 3.2)
113
+ rdf-n3 (~> 3.2)
114
+ rdf-normalize (~> 0.5)
115
+ rdf-ordered-repo (~> 3.2)
116
+ rdf-rdfa (~> 3.2)
117
+ rdf-rdfxml (~> 3.2)
118
+ rdf-reasoner (~> 0.8)
119
+ rdf-tabular (~> 3.2)
120
+ rdf-trig (~> 3.2)
121
+ rdf-trix (~> 3.2)
122
+ rdf-turtle (~> 3.2)
123
+ rdf-vocab (~> 3.2)
124
+ rdf-xsd (~> 3.2)
125
+ shacl (~> 0.2)
126
+ shex (~> 0.7)
127
+ sparql (~> 3.2)
128
+ sparql-client (~> 3.2)
129
+ linkheaders-processor (0.1.9)
130
+ json (~> 2.0)
131
+ json-ld (~> 3.2)
132
+ json-ld-preloaded (~> 3.2)
133
+ metainspector (~> 5.11.2)
134
+ rest-client (~> 2.1)
135
+ securerandom (~> 0.1.0)
136
+ logger (1.5.1)
137
+ matrix (0.4.2)
138
+ metainspector (5.11.2)
139
+ addressable (~> 2.7)
140
+ faraday (~> 1.4)
141
+ faraday-cookie_jar (~> 0.0)
142
+ faraday-encoding (~> 0.0)
143
+ faraday-http-cache (~> 2.2)
144
+ faraday_middleware (~> 1.0)
145
+ fastimage (~> 2.2)
146
+ nesty (~> 1.0)
147
+ nokogiri (~> 1.11)
148
+ mime-types (3.4.1)
149
+ mime-types-data (~> 3.2015)
150
+ mime-types-data (3.2022.0105)
151
+ multi_json (1.15.0)
152
+ multipart-post (2.2.3)
153
+ nesty (1.0.2)
154
+ net-http-persistent (4.0.1)
155
+ connection_pool (~> 2.2)
156
+ netrc (0.11.0)
157
+ nokogiri (1.13.8-x86_64-linux)
158
+ racc (~> 1.4)
159
+ parallel (1.22.1)
160
+ parseconfig (1.1.2)
161
+ parser (3.1.2.0)
162
+ ast (~> 2.4.1)
163
+ public_suffix (4.0.7)
164
+ racc (1.6.0)
165
+ rack (2.2.4)
166
+ rainbow (3.1.1)
167
+ rake (13.0.6)
168
+ rdf (3.2.8)
169
+ link_header (~> 0.0, >= 0.0.8)
170
+ rdf-aggregate-repo (3.2.1)
171
+ rdf (~> 3.2)
172
+ rdf-hamster-repo (3.2.1)
173
+ hamster (~> 3.0)
174
+ rdf (~> 3.2, >= 3.2.1)
175
+ rdf-isomorphic (3.2.1)
176
+ rdf (~> 3.2)
177
+ rdf-json (3.2.0)
178
+ rdf (~> 3.2)
179
+ rdf-microdata (3.2.1)
180
+ htmlentities (~> 4.3)
181
+ nokogiri (~> 1.13)
182
+ rdf (~> 3.2)
183
+ rdf-rdfa (~> 3.2)
184
+ rdf-xsd (~> 3.2)
185
+ rdf-n3 (3.2.1)
186
+ ebnf (~> 2.2)
187
+ rdf (~> 3.2)
188
+ sparql (~> 3.2)
189
+ sxp (~> 1.2)
190
+ rdf-normalize (0.5.0)
191
+ rdf (~> 3.2)
192
+ rdf-ordered-repo (3.2.1)
193
+ rdf (~> 3.2, >= 3.2.1)
194
+ rdf-rdfa (3.2.0)
195
+ haml (~> 5.2)
196
+ htmlentities (~> 4.3)
197
+ rdf (~> 3.2)
198
+ rdf-aggregate-repo (~> 3.2)
199
+ rdf-vocab (~> 3.2)
200
+ rdf-xsd (~> 3.2)
201
+ rdf-rdfxml (3.2.0)
202
+ htmlentities (~> 4.3)
203
+ rdf (~> 3.2)
204
+ rdf-rdfa (~> 3.2)
205
+ rdf-xsd (~> 3.2)
206
+ rdf-reasoner (0.8.0)
207
+ rdf (~> 3.2)
208
+ rdf-xsd (~> 3.2)
209
+ rdf-tabular (3.2.1)
210
+ addressable (~> 2.8)
211
+ bcp47 (~> 0.3, >= 0.3.3)
212
+ json-ld (~> 3.2)
213
+ rdf (~> 3.2, >= 3.2.7)
214
+ rdf-vocab (~> 3.2)
215
+ rdf-xsd (~> 3.2)
216
+ rdf-trig (3.2.0)
217
+ ebnf (~> 2.2)
218
+ rdf (~> 3.2)
219
+ rdf-turtle (~> 3.2)
220
+ rdf-trix (3.2.0)
221
+ rdf (~> 3.2)
222
+ rdf-xsd (~> 3.2)
223
+ rdf-turtle (3.2.1)
224
+ ebnf (~> 2.3)
225
+ rdf (~> 3.2)
226
+ rdf-vocab (3.2.1)
227
+ rdf (~> 3.2, >= 3.2.4)
228
+ rdf-xsd (3.2.1)
229
+ rdf (~> 3.2)
230
+ rexml (~> 3.2)
231
+ regexp_parser (2.5.0)
232
+ rest-client (2.1.0)
233
+ http-accept (>= 1.7.0, < 2.0)
234
+ http-cookie (>= 1.0.2, < 2.0)
235
+ mime-types (>= 1.16, < 4.0)
236
+ netrc (~> 0.8)
237
+ rexml (3.2.5)
238
+ rspec (3.11.0)
239
+ rspec-core (~> 3.11.0)
240
+ rspec-expectations (~> 3.11.0)
241
+ rspec-mocks (~> 3.11.0)
242
+ rspec-core (3.11.0)
243
+ rspec-support (~> 3.11.0)
244
+ rspec-expectations (3.11.0)
245
+ diff-lcs (>= 1.2.0, < 2.0)
246
+ rspec-support (~> 3.11.0)
247
+ rspec-mocks (3.11.1)
248
+ diff-lcs (>= 1.2.0, < 2.0)
249
+ rspec-support (~> 3.11.0)
250
+ rspec-support (3.11.0)
251
+ rubocop (1.32.0)
252
+ json (~> 2.3)
253
+ parallel (~> 1.10)
254
+ parser (>= 3.1.0.0)
255
+ rainbow (>= 2.2.2, < 4.0)
256
+ regexp_parser (>= 1.8, < 3.0)
257
+ rexml (>= 3.2.5, < 4.0)
258
+ rubocop-ast (>= 1.19.1, < 2.0)
259
+ ruby-progressbar (~> 1.7)
260
+ unicode-display_width (>= 1.4.0, < 3.0)
261
+ rubocop-ast (1.19.1)
262
+ parser (>= 3.1.1.0)
263
+ ruby-progressbar (1.11.0)
264
+ ruby2_keywords (0.0.5)
265
+ scanf (1.0.0)
266
+ securerandom (0.1.1)
267
+ shacl (0.3.0)
268
+ json-ld (~> 3.2)
269
+ rdf (~> 3.2, >= 3.2.8)
270
+ sparql (~> 3.2, >= 3.2.4)
271
+ sxp (~> 1.2)
272
+ shex (0.7.1)
273
+ ebnf (~> 2.2)
274
+ htmlentities (~> 4.3)
275
+ json-ld (~> 3.2)
276
+ json-ld-preloaded (~> 3.2)
277
+ rdf (~> 3.2)
278
+ rdf-xsd (~> 3.2)
279
+ sparql (~> 3.2)
280
+ sxp (~> 1.2)
281
+ sparql (3.2.4)
282
+ builder (~> 3.2)
283
+ ebnf (~> 2.2, >= 2.3.1)
284
+ logger (~> 1.5)
285
+ rdf (~> 3.2, >= 3.2.8)
286
+ rdf-aggregate-repo (~> 3.2)
287
+ rdf-xsd (~> 3.2)
288
+ sparql-client (~> 3.2, >= 3.2.1)
289
+ sxp (~> 1.2, >= 1.2.2)
290
+ sparql-client (3.2.1)
291
+ net-http-persistent (~> 4.0, >= 4.0.1)
292
+ rdf (~> 3.2, >= 3.2.6)
293
+ sxp (1.2.2)
294
+ matrix
295
+ rdf (~> 3.2)
296
+ temple (0.8.2)
297
+ tilt (2.0.11)
298
+ unf (0.1.4)
299
+ unf_ext
300
+ unf_ext (0.0.8.2)
301
+ unicode-display_width (2.2.0)
302
+ unicode-types (1.7.0)
303
+ xml-simple (1.1.9)
304
+ rexml
305
+
306
+ PLATFORMS
307
+ x86_64-linux
308
+
309
+ DEPENDENCIES
310
+ fsp_harvester!
311
+ rake (~> 13.0)
312
+ rspec (~> 3.11)
313
+ rubocop (~> 1.7)
314
+
315
+ RUBY VERSION
316
+ ruby 3.0.0p0
317
+
318
+ BUNDLED WITH
319
+ 2.3.12
data/LICENSE ADDED
@@ -0,0 +1,21 @@
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+ MIT License
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+
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+ Copyright (c) 2022 Mark Wilkinson
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
data/README.md ADDED
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+ # FspHarvester
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+
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+ EXPERIMENTAL: DO NOT USE
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+
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+ ## Installation
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+
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+ Add this line to your application's Gemfile:
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+
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+ ```ruby
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+ gem 'fsp_harvester'
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+ ```
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+
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+ And then execute:
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+
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+ $ bundle install
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+
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+ Or install it yourself as:
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+
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+ $ gem install fsp_harvester
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+
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+ ## Usage
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+
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+
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+
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+ ## Development
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+
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+
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+ ## Contributing
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+
30
+ Bug reports and pull requests are welcome on GitHub at https://github.com/markwilkinson/fsp_harvester.
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+
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+ ## License
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+
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+ The gem is available as open source under the terms of the [MIT License](https://opensource.org/licenses/MIT).
data/Rakefile ADDED
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+ # frozen_string_literal: true
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+
3
+ require "bundler/gem_tasks"
4
+ require "rspec/core/rake_task"
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+
6
+ RSpec::Core::RakeTask.new(:spec)
7
+
8
+ require "rubocop/rake_task"
9
+
10
+ RuboCop::RakeTask.new
11
+
12
+ task default: %i[spec rubocop]
data/bin/console ADDED
@@ -0,0 +1,15 @@
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+ #!/usr/bin/env ruby
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+ # frozen_string_literal: true
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+
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+ require "bundler/setup"
5
+ require "fsp_harvester"
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+
7
+ # You can add fixtures and/or initialization code here to make experimenting
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+ # with your gem easier. You can also use a different console, if you like.
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+
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+ # (If you use this, don't forget to add pry to your Gemfile!)
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+ # require "pry"
12
+ # Pry.start
13
+
14
+ require "irb"
15
+ IRB.start(__FILE__)
data/bin/setup ADDED
@@ -0,0 +1,8 @@
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+ #!/usr/bin/env bash
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+ set -euo pipefail
3
+ IFS=$'\n\t'
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+ set -vx
5
+
6
+ bundle install
7
+
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+ # Do any other automated setup that you need to do here
data/example_test.rb ADDED
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+ # frozen string literal = false
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+ require 'cgi'
3
+ require 'json'
4
+ require 'uri'
5
+ require 'rdf'
6
+ require 'rdf/turtle'
7
+ require 'sparql'
8
+ require 'fsp_harvester'
9
+
10
+ def test_guid(guid:)
11
+ _links, metadata = FspHarvester::Utils.resolve_guid(guid: guid) # [LinkHeader::Link], FspHarvester::MetadataObject
12
+
13
+ metadata.comments << if metadata.guidtype == 'unknown'
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+ "FAILURE: The identifier #{guid} did not match any known identification system.\n"
15
+ else
16
+ "SUCCESS: The identifier #{guid} matched known GUID type system #{metadata.guidtype}.\n"
17
+ end
18
+ metadata.comments
19
+ end
20
+
21
+ guid = ARGV[0] || 'https://s11.no/2022/a2a-fair-metrics/07-http-describedby-citeas-linkset-json/'
22
+ response = test_guid(guid: guid)
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+
24
+ puts response
data/lib/constants.rb ADDED
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+ ACCEPT_ALL_HEADER = { 'Accept' => 'text/turtle, application/ld+json, application/rdf+xml, text/xhtml+xml, application/n3, application/rdf+n3, application/turtle, application/x-turtle, text/n3, text/turtle, text/rdf+n3, text/rdf+turtle, application/n-triples' }
2
+
3
+ TEXT_FORMATS = {
4
+ 'text' => ['text/plain']
5
+ }
6
+
7
+ RDF_FORMATS = {
8
+ 'jsonld' => ['application/ld+json', 'application/vnd.schemaorg.ld+json'], # NEW FOR DATACITE
9
+ 'turtle' => ['text/turtle', 'application/n3', 'application/rdf+n3',
10
+ 'application/turtle', 'application/x-turtle', 'text/n3', 'text/turtle',
11
+ 'text/rdf+n3', 'text/rdf+turtle'],
12
+ # 'rdfa' => ['text/xhtml+xml', 'application/xhtml+xml'],
13
+ 'rdfxml' => ['application/rdf+xml'],
14
+ 'triples' => ['application/n-triples', 'application/n-quads', 'application/trig']
15
+ }
16
+
17
+ XML_FORMATS = {
18
+ 'xml' => ['text/xhtml', 'text/xml']
19
+ }
20
+
21
+ HTML_FORMATS = {
22
+ 'html' => ['text/html', 'text/xhtml+xml', 'application/xhtml+xml']
23
+ }
24
+
25
+ JSON_FORMATS = {
26
+ 'json' => ['application/json']
27
+ }
28
+
29
+ DATA_PREDICATES = [
30
+ 'http://www.w3.org/ns/ldp#contains',
31
+ 'http://xmlns.com/foaf/0.1/primaryTopic',
32
+ 'http://purl.obolibrary.org/obo/IAO_0000136', # is about
33
+ 'http://purl.obolibrary.org/obo/IAO:0000136', # is about (not the valid URL...)
34
+ 'https://www.w3.org/ns/ldp#contains',
35
+ 'https://xmlns.com/foaf/0.1/primaryTopic',
36
+
37
+ 'http://schema.org/mainEntity',
38
+ 'http://schema.org/codeRepository',
39
+ 'http://schema.org/distribution',
40
+ 'https://schema.org/mainEntity',
41
+ 'https://schema.org/codeRepository',
42
+ 'https://schema.org/distribution',
43
+
44
+ 'http://www.w3.org/ns/dcat#distribution',
45
+ 'https://www.w3.org/ns/dcat#distribution',
46
+ 'http://www.w3.org/ns/dcat#dataset',
47
+ 'https://www.w3.org/ns/dcat#dataset',
48
+ 'http://www.w3.org/ns/dcat#downloadURL',
49
+ 'https://www.w3.org/ns/dcat#downloadURL',
50
+ 'http://www.w3.org/ns/dcat#accessURL',
51
+ 'https://www.w3.org/ns/dcat#accessURL',
52
+
53
+ 'http://semanticscience.org/resource/SIO_000332', # is about
54
+ 'http://semanticscience.org/resource/is-about', # is about
55
+ 'https://semanticscience.org/resource/SIO_000332', # is about
56
+ 'https://semanticscience.org/resource/is-about', # is about
57
+ 'https://purl.obolibrary.org/obo/IAO_0000136' # is about
58
+ ]
59
+
60
+ SELF_IDENTIFIER_PREDICATES = [
61
+ 'http://purl.org/dc/elements/1.1/identifier',
62
+ 'https://purl.org/dc/elements/1.1/identifier',
63
+ 'http://purl.org/dc/terms/identifier',
64
+ 'http://schema.org/identifier',
65
+ 'https://purl.org/dc/terms/identifier',
66
+ 'https://schema.org/identifier'
67
+ ]
68
+
69
+ GUID_TYPES = { 'inchi' => Regexp.new(/^\w{14}-\w{10}-\w$/),
70
+ 'doi' => Regexp.new(%r{^10.\d{4,9}/[-._;()/:A-Z0-9]+$}i),
71
+ 'handle1' => Regexp.new(%r{^[^/]+/[^/]+$}i),
72
+ 'handle2' => Regexp.new(%r{^\d{4,5}/[-._;()/:A-Z0-9]+$}i), # legacy style 12345/AGB47A
73
+ 'uri' => Regexp.new(%r{^\w+:/?/?[^\s]+$}) }
74
+
75
+ CONFIG = File.exist?('config.conf') ? ParseConfig.new('config.conf') : {}
76
+ if CONFIG['extruct'] && CONFIG['extruct']['command'] && !CONFIG['extruct']['command'].empty?
77
+ extruct = config['extruct']['command']
78
+ end
79
+ extruct = 'extruct' unless @extruct_command
80
+ extruct.strip!
81
+ case @extruct
82
+ when /[&|;`$\s]/
83
+ abort 'The Extruct command in the config file appears to be subject to command injection. I will not continue'
84
+ when /echo/i
85
+ abort 'The Extruct command in the config file appears to be subject to command injection. I will not continue'
86
+ end
87
+ EXTRUCT_COMMAND = extruct
88
+
89
+ rdf_command = CONFIG['rdf']['command'] if CONFIG['rdf'] && CONFIG['rdf']['command'] && !CONFIG['rdf']['command'].empty?
90
+ rdf_command = 'rdf' unless @rdf_command
91
+ rdf_command.strip
92
+ case rdf_command
93
+ when /[&|;`$\s]/
94
+ abort 'The RDF command in the config file appears to be subject to command injection. I will not continue'
95
+ when /echo/i
96
+ abort 'The RDF command in the config file appears to be subject to command injection. I will not continue'
97
+ when !(/rdf$/ =~ $_)
98
+ abort "this software requires that Kelloggs Distiller tool is used. The distiller command must end in 'rdf'"
99
+ end
100
+ RDF_COMMAND = rdf_command
101
+
102
+ if CONFIG['tika'] && CONFIG['tika']['command'] && !CONFIG['tika']['command'].empty?
103
+ tika_command = CONFIG['tika']['command']
104
+ end
105
+ tika_command = 'http://localhost:9998/meta' unless @tika_command
106
+ TIKA_COMMAND = tika_command
@@ -0,0 +1,5 @@
1
+ # frozen_string_literal: true
2
+
3
+ module FspHarvester
4
+ VERSION = "0.1.2"
5
+ end
@@ -0,0 +1,137 @@
1
+ # frozen_string_literal: true
2
+
3
+ require_relative "fsp_harvester/version"
4
+ require "json/ld"
5
+ require "json/ld/preloaded"
6
+ require "json"
7
+ require "linkheaders/processor"
8
+ require "addressable"
9
+ require "tempfile"
10
+ require "xmlsimple"
11
+ require "nokogiri"
12
+ require "parseconfig"
13
+ require "rest-client"
14
+ require "cgi"
15
+ require "digest"
16
+ require "open3"
17
+ require "metainspector"
18
+ require "rdf/xsd"
19
+ require_relative "./metadata_object"
20
+ require_relative "./constants"
21
+ require_relative "./web_utils"
22
+
23
+ module FspHarvester
24
+ class Error < StandardError
25
+ end
26
+
27
+ class Utils
28
+ # @@distillerknown = {} # global, hash of sha256 keys of message bodies - have they been seen before t/f
29
+ # @warnings = JSON.parse(File.read("warnings.json"))
30
+ @meta = FspHarvester::MetadataObject.new
31
+
32
+ def self.resolve_guid(guid:)
33
+ @meta.finalURI = [guid]
34
+ type, url = convertToURL(guid: guid)
35
+ links = Array.new
36
+ unless type
37
+ @meta.warnings << ["006", guid, ""]
38
+ @meta.comments << "FATAL: GUID type not recognized.\n"
39
+ else
40
+ links, @meta = resolve_url(url: url)
41
+ end
42
+ [links, @meta]
43
+ end
44
+
45
+ def self.convertToURL(guid:)
46
+ GUID_TYPES.each do |k, regex|
47
+ if k == "inchi" and regex.match(guid)
48
+ return "inchi", "https://pubchem.ncbi.nlm.nih.gov/rest/rdf/inchikey/#{guid}"
49
+ elsif k == "handle1" and regex.match(guid)
50
+ return "handle", "http://hdl.handle.net/#{guid}"
51
+ elsif k == "handle2" and regex.match(guid)
52
+ return "handle", "http://hdl.handle.net/#{guid}"
53
+ elsif k == "uri" and regex.match(guid)
54
+ return "uri", guid
55
+ elsif k == "doi" and regex.match(guid)
56
+ return "doi", "https://doi.org/#{guid}"
57
+ end
58
+ end
59
+ [nil, nil]
60
+ end
61
+
62
+ def self.typeit(guid:)
63
+ Utils::GUID_TYPES.each do |type, regex|
64
+ return type if regex.match(guid)
65
+ end
66
+ false
67
+ end
68
+
69
+ def self.resolve_url(url:, nolinkheaders: false, header: ACCEPT_ALL_HEADER)
70
+ @meta.guidtype = "uri" if @meta.guidtype.nil?
71
+ warn "\n\n FETCHING #{url} #{header}\n\n"
72
+ response = FspHarvester::WebUtils.fspfetch(url: url, headers: header)
73
+ warn "\n\n head #{response.headers.inspect}\n\n"
74
+
75
+ unless response
76
+ @meta.warnings << ["001", url, header]
77
+ @meta.comments << "WARN: Unable to resolve #{url} using HTTP Accept header #{header}.\n"
78
+ return [[], @meta]
79
+ end
80
+
81
+ @meta.comments << "INFO: following redirection using this header led to the following URL: #{@meta.finalURI.last}. Using the output from this URL for the next few tests..."
82
+ @meta.full_response << response.body
83
+
84
+ links = process_link_headers(response: response) unless nolinkheaders
85
+ [links, @meta]
86
+ end
87
+
88
+ def self.process_link_headers(response:)
89
+ warn "\n\n parsing #{response.headers}\n\n"
90
+
91
+ parser = LinkHeaders::Processor.new(default_anchor: @meta.finalURI.last)
92
+ parser.extract_and_parse(response: response)
93
+ factory = parser.factory # LinkHeaders::LinkFactory
94
+
95
+ citeas = 0
96
+ describedby = 0
97
+ warn "\n\n length #{factory.all_links.length}\n\n"
98
+
99
+ factory.all_links.each do |l|
100
+ case l.relation
101
+ when "cite-as"
102
+ citeas += 1
103
+ when "describedby"
104
+ describedby += 1
105
+ unless l.respond_to? "type"
106
+ @meta.warnings << ["005", l.url, ""]
107
+ @meta.comments << "WARN: The resource does not follow the FAIR Signposting standard, which requires any describedby links to also have a 'type' attribute\n"
108
+ end
109
+ end
110
+ end
111
+ if citeas > 1
112
+ self.check_for_conflicts(factory: factory) # this merelty adsds to the metadata objects if there are conflicts
113
+ end
114
+
115
+ unless citeas == 1 && describedby > 0
116
+ @meta.warnings << ["004", "", ""]
117
+ @meta.comments << "WARN: The resource does not follow the FAIR Signposting standard, which requires exactly one cite-as header, and at least one describedby header\n"
118
+ end
119
+ factory.all_links
120
+ end
121
+
122
+ def self.check_for_conflicts(factory:) # incoming: {"link1" => {"sectiontype1" => value, "sectiontype2" => value2}}
123
+ @meta.comments << "INFO: checking for conflicting cite-as links"
124
+ citeas = Array.new
125
+ factory.all_links.each do |link|
126
+ next unless link.relation == 'cite-as'
127
+ citeas << link.href
128
+ end
129
+ unless citeas == citeas.uniq
130
+ @meta.warnings << ["007", url, header]
131
+ @meta.comments << "WARN: The resource does not follow the FAIR Signposting standard: Found conflicting cite-as link headers\n"
132
+ else
133
+ @meta.comments << "INFO: No conflicting cite-as links found."
134
+ end
135
+ end
136
+ end
137
+ end
@@ -0,0 +1,28 @@
1
+ module FspHarvester
2
+ class MetadataObject
3
+ attr_accessor :hash, :graph, :comments, :warnings, :guidtype, :full_response, :finalURI # a hash of metadata # a RDF.rb graph of metadata # an array of comments # the type of GUID that was detected # will be an array of Net::HTTP::Response
4
+
5
+ def initialize(_params = {}) # get a name from the "new" call, or set a default
6
+ @hash = {}
7
+ @graph = RDF::Graph.new
8
+ @comments = []
9
+ @warnings = []
10
+ @full_response = []
11
+ @finalURI = []
12
+ end
13
+
14
+ def merge_hash(hash)
15
+ # $stderr.puts "\n\n\nIncoming Hash #{hash.inspect}"
16
+ self.hash = self.hash.merge(hash)
17
+ end
18
+
19
+ def merge_rdf(triples) # incoming list of triples
20
+ graph << triples
21
+ graph
22
+ end
23
+
24
+ def rdf
25
+ graph
26
+ end
27
+ end
28
+ end
data/lib/swagger.rb ADDED
@@ -0,0 +1,224 @@
1
+ class Swagger
2
+ attr_accessor :debug
3
+ attr_accessor :title
4
+ attr_accessor :tests_metric
5
+ attr_accessor :description
6
+ attr_accessor :applies_to_principle
7
+ attr_accessor :organization
8
+ attr_accessor :org_url
9
+ attr_accessor :responsible_developer
10
+ attr_accessor :email
11
+ attr_accessor :developer_ORCiD
12
+ attr_accessor :protocol
13
+ attr_accessor :host
14
+ attr_accessor :basePath
15
+ attr_accessor :path
16
+ attr_accessor :response_description
17
+ attr_accessor :schemas
18
+ attr_accessor :comments
19
+ attr_accessor :fairsharing_key_location
20
+ attr_accessor :score
21
+ attr_accessor :testedGUID
22
+
23
+ def initialize(params = {})
24
+ @debug = params.fetch(:debug, false)
25
+
26
+ @title = params.fetch(:title, 'unnamed')
27
+ @tests_metric = params.fetch(:tests_metric)
28
+ @description = params.fetch(:description, 'default_description')
29
+ @applies_to_principle = params.fetch(:applies_to_principle, 'some principle')
30
+ @version = params.fetch(:version, "0.1")
31
+ @organization = params.fetch(:organization, 'Some Organization')
32
+ @org_url = params.fetch(:org_url)
33
+ @responsible_develper = params.fetch(:responsible_developer, 'Some Person')
34
+ @email = params.fetch(:email)
35
+ @developer_ORCiD = params.fetch(:developer_ORCiD)
36
+ @host = params.fetch(:host)
37
+ @protocol = params.fetch(:protocol, "https")
38
+ @basePath = params.fetch(:basePath)
39
+ @path = params.fetch(:path)
40
+ @response_description = params.fetch(:response_description)
41
+ @schemas = params.fetch(:schemas, [])
42
+ @comments = params.fetch(:comments, [])
43
+ @fairsharing_key_location = params.fetch(:fairsharing_key_location)
44
+ @score = params.fetch(:score, 0)
45
+ @testedGUID = params.fetch(:testedGUID, "")
46
+
47
+
48
+
49
+ end
50
+
51
+
52
+
53
+ def fairsharing_key
54
+ return @fairsharing_key_location
55
+ end
56
+
57
+
58
+
59
+ def getSwagger
60
+
61
+ message = <<"EOF_EOF"
62
+ swagger: '2.0'
63
+ info:
64
+ version: '#{@version}'
65
+ title: "#{@title}"
66
+ x-tests_metric: '#{@tests_metric}'
67
+ description: >-
68
+ #{@description}
69
+ x-applies_to_principle: "#{@applies_to_principle}"
70
+ contact:
71
+ x-organization: "#{@organization}"
72
+ url: "#{@org_url}"
73
+ name: '#{@responsible_develper}'
74
+ x-role: "responsible developer"
75
+ email: #{@email}
76
+ x-id: '#{developer_ORCiD}'
77
+ host: #{@host}
78
+ basePath: #{@basePath}
79
+ schemes:
80
+ - #{@protocol}
81
+ paths:
82
+ #{@path}:
83
+ post:
84
+ parameters:
85
+ - name: content
86
+ in: body
87
+ required: true
88
+ schema:
89
+ $ref: '#/definitions/schemas'
90
+ consumes:
91
+ - application/json
92
+ produces:
93
+ - application/json
94
+ responses:
95
+ "200":
96
+ description: >-
97
+ #{@response_description}
98
+ definitions:
99
+ schemas:
100
+ required:
101
+ EOF_EOF
102
+
103
+
104
+
105
+ self.schemas.keys.each do |key|
106
+ message += " - #{key}\n"
107
+ end
108
+ message += " properties:\n"
109
+ self.schemas.keys.each do |key|
110
+ message += " #{key}:\n"
111
+ message += " type: #{self.schemas[key][0]}\n"
112
+ message += " description: >-\n"
113
+ message += " #{self.schemas[key][1]}\n"
114
+ end
115
+
116
+ return message
117
+ end
118
+
119
+
120
+
121
+ # A utility function that SHOULD NOT BE CALLED EXTERNALLY
122
+ #
123
+ # @param s - subject node
124
+ # @param p - predicate node
125
+ # @param o - object node
126
+ # @param repo - an RDF::Graph object
127
+ def triplify(s, p, o, repo)
128
+
129
+ if s.class == String
130
+ s = s.strip
131
+ end
132
+ if p.class == String
133
+ p = p.strip
134
+ end
135
+ if o.class == String
136
+ o = o.strip
137
+ end
138
+
139
+ unless s.respond_to?('uri')
140
+
141
+ if s.to_s =~ /^\w+:\/?\/?[^\s]+/
142
+ s = RDF::URI.new(s.to_s)
143
+ else
144
+ self.debug and $stderr.puts "Subject #{s.to_s} must be a URI-compatible thingy"
145
+ abort "Subject #{s.to_s} must be a URI-compatible thingy"
146
+ end
147
+ end
148
+
149
+ unless p.respond_to?('uri')
150
+
151
+ if p.to_s =~ /^\w+:\/?\/?[^\s]+/
152
+ p = RDF::URI.new(p.to_s)
153
+ else
154
+ self.debug and $stderr.puts "Predicate #{p.to_s} must be a URI-compatible thingy"
155
+ abort "Predicate #{p.to_s} must be a URI-compatible thingy"
156
+ end
157
+ end
158
+
159
+ unless o.respond_to?('uri')
160
+ if o.to_s =~ /\A\w+:\/?\/?\w[^\s]+/
161
+ o = RDF::URI.new(o.to_s)
162
+ elsif o.to_s =~ /^\d{4}-[01]\d-[0-3]\dT[0-2]\d:[0-5]\d/
163
+ o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.date)
164
+ elsif o.to_s =~ /^[+-]?\d+\.\d+/
165
+ o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.float)
166
+ elsif o.to_s =~ /^[+-]?[0-9]+$/
167
+ o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.int)
168
+ else
169
+ o = RDF::Literal.new(o.to_s, :language => :en)
170
+ end
171
+ end
172
+
173
+ self.debug and $stderr.puts("\n\ninserting #{s.to_s} #{p.to_s} #{o.to_s}\n\n")
174
+ triple = RDF::Statement(s, p, o)
175
+ repo.insert(triple)
176
+
177
+ return true
178
+ end
179
+
180
+
181
+ # A utility function that SHOULD NOT BE CALLED EXTERNALLY
182
+ #
183
+ # @param s - subject node
184
+ # @param p - predicate node
185
+ # @param o - object node
186
+ # @param repo - an RDF::Graph object
187
+ def Swagger.triplify(s, p, o, repo)
188
+ return triplify(s,p,o,repo)
189
+ end
190
+
191
+ def addComment(newcomment)
192
+ self.comments << newcomment.to_s
193
+ #return self.comments
194
+ end
195
+
196
+ def createEvaluationResponse
197
+
198
+ g = RDF::Graph.new
199
+
200
+ dt = Time.now.iso8601
201
+ uri = self.testedGUID
202
+
203
+ me = self.protocol + "://" + self.host + "/" + self.basePath + self.path
204
+
205
+ meURI ="#{me}##{uri}/result-#{dt}"
206
+ meURI =Addressable::URI.escape(meURI)
207
+
208
+ triplify(meURI, "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://fairmetrics.org/resources/metric_evaluation_result", g );
209
+ triplify(meURI, "http://semanticscience.org/resource/SIO_000300", self.score, g )
210
+ triplify(meURI, "http://purl.obolibrary.org/obo/date", dt, g )
211
+ triplify(meURI, "http://schema.org/softwareVersion", VERSION, g )
212
+ triplify(meURI,"http://semanticscience.org/resource/SIO_000332", uri, g)
213
+
214
+ comments = "no comments received. "
215
+
216
+ comments = self.comments.join("\n") if self.comments.size > 0
217
+ triplify(meURI, "http://schema.org/comment", comments, g)
218
+
219
+ return g.dump(:jsonld)
220
+ end
221
+
222
+ end
223
+
224
+
data/lib/warnings.json ADDED
@@ -0,0 +1,33 @@
1
+ {
2
+ "001": {
3
+ "message": "Unable to resolve guid using Accept headers for Linked Data",
4
+ "linkout": "",
5
+ "severity": "WARN"
6
+ },
7
+ "002": {
8
+ "message": "HTTP Response (203) is non-authoritative",
9
+ "linkout": "",
10
+ "severity": "WARN"
11
+ },
12
+ "003": {
13
+ "message": "HTTP Response indicates failure (500-range)",
14
+ "linkout": "",
15
+ "severity": "WARN"
16
+ },
17
+ "004": {
18
+ "message": "The resource does not follow the FAIR Signposting standard, which requires exactly one cite-as header, and at least one describedby header",
19
+ "linkout": "",
20
+ "severity": "WARN"
21
+ },
22
+ "005": {
23
+ "message": "The resource does not follow the FAIR Signposting standard, which requires any describedby links to also have a 'type' attribute indicating the Accept headers that should be sent with the request",
24
+ "linkout": "",
25
+ "severity": "WARN"
26
+ },
27
+ "006": {
28
+ "message": "GUID type not recognized",
29
+ "linkout": "",
30
+ "severity": "WARN"
31
+ }
32
+
33
+ }
data/lib/web_utils.rb ADDED
@@ -0,0 +1,50 @@
1
+ module FspHarvester
2
+
3
+ class WebUtils
4
+ def self.fspfetch(url:, headers: ACCEPT_ALL_HEADER) # we will try to retrieve turtle whenever possible
5
+ warn 'In fetch routine now. '
6
+
7
+ begin
8
+ warn "executing call over the Web to #{url}"
9
+ response = RestClient::Request.execute({
10
+ method: :get,
11
+ url: url.to_s,
12
+ # user: user,
13
+ # password: pass,
14
+ headers: headers
15
+ })
16
+ @meta.finalURI |= [response.request.url] if @meta # it's possible to call this method without affecting the metadata object being created by the harvester
17
+ warn "There was a response to the call #{url}"
18
+ warn "There was a response to the call #{response.request.url}"
19
+ warn "Response code #{response.code}"
20
+ if response.code == 203 && @meta
21
+ @meta.warnings << ["002", url, headers]
22
+ @meta.comments << "WARN: Response is non-authoritative (HTTP response code: #{response.code}). Headers may have been manipulated encountered when trying to resolve #{url}\n"
23
+ end
24
+ response
25
+ rescue RestClient::ExceptionWithResponse => e
26
+ warn "EXCEPTION WITH RESPONSE! #{e.response}\n#{e.response.headers}"
27
+ @meta.warnings << ["003", url, headers] if @meta
28
+ @meta.comments << "WARN: HTTP error #{e} encountered when trying to resolve #{url}\n" if @meta
29
+ if e.response.code == 500
30
+ return false
31
+ else
32
+ e.response
33
+ end
34
+ # now we are returning the headers and body that were returned
35
+ rescue RestClient::Exception => e
36
+ warn "EXCEPTION WITH NO RESPONSE! #{e}"
37
+ @meta.warnings << ["003", url, headers] if @meta
38
+ @meta.comments << "WARN: HTTP error #{e} encountered when trying to resolve #{url}\n" if @meta
39
+ false
40
+ # now we are returning 'False', and we will check that with an \"if\" statement in our main code
41
+ rescue Exception => e
42
+ warn "EXCEPTION UNKNOWN! #{e}"
43
+ @meta.warnings << ["003", url, headers] if @meta
44
+ @meta.comments << "WARN: HTTP error #{e} encountered when trying to resolve #{url}\n" if @meta
45
+ false
46
+ # now we are returning 'False', and we will check that with an \"if\" statement in our main code
47
+ end
48
+ end
49
+ end
50
+ end
metadata ADDED
@@ -0,0 +1,217 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: fsp_harvester
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.1.2
5
+ platform: ruby
6
+ authors:
7
+ - Mark Wilkinson
8
+ autorequire:
9
+ bindir: exe
10
+ cert_chain: []
11
+ date: 2022-07-27 00:00:00.000000000 Z
12
+ dependencies:
13
+ - !ruby/object:Gem::Dependency
14
+ name: json
15
+ requirement: !ruby/object:Gem::Requirement
16
+ requirements:
17
+ - - "~>"
18
+ - !ruby/object:Gem::Version
19
+ version: '2.0'
20
+ type: :runtime
21
+ prerelease: false
22
+ version_requirements: !ruby/object:Gem::Requirement
23
+ requirements:
24
+ - - "~>"
25
+ - !ruby/object:Gem::Version
26
+ version: '2.0'
27
+ - !ruby/object:Gem::Dependency
28
+ name: linkeddata
29
+ requirement: !ruby/object:Gem::Requirement
30
+ requirements:
31
+ - - "~>"
32
+ - !ruby/object:Gem::Version
33
+ version: '3.2'
34
+ type: :runtime
35
+ prerelease: false
36
+ version_requirements: !ruby/object:Gem::Requirement
37
+ requirements:
38
+ - - "~>"
39
+ - !ruby/object:Gem::Version
40
+ version: '3.2'
41
+ - !ruby/object:Gem::Dependency
42
+ name: linkheaders-processor
43
+ requirement: !ruby/object:Gem::Requirement
44
+ requirements:
45
+ - - "~>"
46
+ - !ruby/object:Gem::Version
47
+ version: 0.1.9
48
+ type: :runtime
49
+ prerelease: false
50
+ version_requirements: !ruby/object:Gem::Requirement
51
+ requirements:
52
+ - - "~>"
53
+ - !ruby/object:Gem::Version
54
+ version: 0.1.9
55
+ - !ruby/object:Gem::Dependency
56
+ name: metainspector
57
+ requirement: !ruby/object:Gem::Requirement
58
+ requirements:
59
+ - - "~>"
60
+ - !ruby/object:Gem::Version
61
+ version: 5.11.2
62
+ type: :runtime
63
+ prerelease: false
64
+ version_requirements: !ruby/object:Gem::Requirement
65
+ requirements:
66
+ - - "~>"
67
+ - !ruby/object:Gem::Version
68
+ version: 5.11.2
69
+ - !ruby/object:Gem::Dependency
70
+ name: parseconfig
71
+ requirement: !ruby/object:Gem::Requirement
72
+ requirements:
73
+ - - "~>"
74
+ - !ruby/object:Gem::Version
75
+ version: '1.1'
76
+ type: :runtime
77
+ prerelease: false
78
+ version_requirements: !ruby/object:Gem::Requirement
79
+ requirements:
80
+ - - "~>"
81
+ - !ruby/object:Gem::Version
82
+ version: '1.1'
83
+ - !ruby/object:Gem::Dependency
84
+ name: rake
85
+ requirement: !ruby/object:Gem::Requirement
86
+ requirements:
87
+ - - "~>"
88
+ - !ruby/object:Gem::Version
89
+ version: '13.0'
90
+ type: :runtime
91
+ prerelease: false
92
+ version_requirements: !ruby/object:Gem::Requirement
93
+ requirements:
94
+ - - "~>"
95
+ - !ruby/object:Gem::Version
96
+ version: '13.0'
97
+ - !ruby/object:Gem::Dependency
98
+ name: rest-client
99
+ requirement: !ruby/object:Gem::Requirement
100
+ requirements:
101
+ - - "~>"
102
+ - !ruby/object:Gem::Version
103
+ version: '2.1'
104
+ type: :runtime
105
+ prerelease: false
106
+ version_requirements: !ruby/object:Gem::Requirement
107
+ requirements:
108
+ - - "~>"
109
+ - !ruby/object:Gem::Version
110
+ version: '2.1'
111
+ - !ruby/object:Gem::Dependency
112
+ name: rspec
113
+ requirement: !ruby/object:Gem::Requirement
114
+ requirements:
115
+ - - "~>"
116
+ - !ruby/object:Gem::Version
117
+ version: '3.11'
118
+ type: :runtime
119
+ prerelease: false
120
+ version_requirements: !ruby/object:Gem::Requirement
121
+ requirements:
122
+ - - "~>"
123
+ - !ruby/object:Gem::Version
124
+ version: '3.11'
125
+ - !ruby/object:Gem::Dependency
126
+ name: rubocop
127
+ requirement: !ruby/object:Gem::Requirement
128
+ requirements:
129
+ - - "~>"
130
+ - !ruby/object:Gem::Version
131
+ version: '1.7'
132
+ type: :runtime
133
+ prerelease: false
134
+ version_requirements: !ruby/object:Gem::Requirement
135
+ requirements:
136
+ - - "~>"
137
+ - !ruby/object:Gem::Version
138
+ version: '1.7'
139
+ - !ruby/object:Gem::Dependency
140
+ name: securerandom
141
+ requirement: !ruby/object:Gem::Requirement
142
+ requirements:
143
+ - - "~>"
144
+ - !ruby/object:Gem::Version
145
+ version: 0.1.0
146
+ type: :runtime
147
+ prerelease: false
148
+ version_requirements: !ruby/object:Gem::Requirement
149
+ requirements:
150
+ - - "~>"
151
+ - !ruby/object:Gem::Version
152
+ version: 0.1.0
153
+ - !ruby/object:Gem::Dependency
154
+ name: xml-simple
155
+ requirement: !ruby/object:Gem::Requirement
156
+ requirements:
157
+ - - "~>"
158
+ - !ruby/object:Gem::Version
159
+ version: '1.1'
160
+ type: :runtime
161
+ prerelease: false
162
+ version_requirements: !ruby/object:Gem::Requirement
163
+ requirements:
164
+ - - "~>"
165
+ - !ruby/object:Gem::Version
166
+ version: '1.1'
167
+ description: Metadata harvester that follows the FAIR Signposting specification.
168
+ email:
169
+ - markw@illuminae.com
170
+ executables: []
171
+ extensions: []
172
+ extra_rdoc_files: []
173
+ files:
174
+ - CHANGELOG.md
175
+ - Gemfile
176
+ - Gemfile.lock
177
+ - LICENSE
178
+ - README.md
179
+ - Rakefile
180
+ - bin/console
181
+ - bin/setup
182
+ - example_test.rb
183
+ - lib/constants.rb
184
+ - lib/fsp_harvester.rb
185
+ - lib/fsp_harvester/version.rb
186
+ - lib/metadata_object.rb
187
+ - lib/swagger.rb
188
+ - lib/warnings.json
189
+ - lib/web_utils.rb
190
+ homepage: https://github.com/markwilkinson/FAIR-Signposting-Harvester
191
+ licenses:
192
+ - MIT
193
+ metadata:
194
+ allowed_push_host: https://rubygems.org
195
+ homepage_uri: https://github.com/markwilkinson/FAIR-Signposting-Harvester
196
+ source_code_uri: https://github.com/markwilkinson/FAIR-Signposting-Harvester
197
+ changelog_uri: https://github.com/markwilkinson/FAIR-Signposting-Harvester
198
+ post_install_message:
199
+ rdoc_options: []
200
+ require_paths:
201
+ - lib
202
+ required_ruby_version: !ruby/object:Gem::Requirement
203
+ requirements:
204
+ - - ">="
205
+ - !ruby/object:Gem::Version
206
+ version: 3.0.0
207
+ required_rubygems_version: !ruby/object:Gem::Requirement
208
+ requirements:
209
+ - - ">="
210
+ - !ruby/object:Gem::Version
211
+ version: '0'
212
+ requirements: []
213
+ rubygems_version: 3.2.28
214
+ signing_key:
215
+ specification_version: 4
216
+ summary: Metadata harvester that follows the FAIR Signposting specification.
217
+ test_files: []