fsp_harvester 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +7 -0
- data/CHANGELOG.md +5 -0
- data/Gemfile +11 -0
- data/Gemfile.lock +319 -0
- data/LICENSE +21 -0
- data/README.md +34 -0
- data/Rakefile +12 -0
- data/bin/console +15 -0
- data/bin/setup +8 -0
- data/example_test.rb +24 -0
- data/lib/constants.rb +106 -0
- data/lib/fsp_harvester/version.rb +5 -0
- data/lib/fsp_harvester.rb +137 -0
- data/lib/metadata_object.rb +28 -0
- data/lib/swagger.rb +224 -0
- data/lib/warnings.json +33 -0
- data/lib/web_utils.rb +50 -0
- metadata +217 -0
checksums.yaml
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metadata.gz: 8834e22e1adbfab672c2f38408e633ac8fb94f3617709f2576c7d2cf653e22500ee95a45b951f153fc07241356a8e983840743ce9849986a32bcb35178df726b
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data/CHANGELOG.md
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data/Gemfile
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data/Gemfile.lock
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PATH
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remote: .
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specs:
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linkeddata (~> 3.2)
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metainspector (~> 5.11.2)
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parseconfig (~> 1.1)
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rake (~> 13.0)
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rest-client (~> 2.1)
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remote: https://rubygems.org/
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faraday-em_synchrony (~> 1.0)
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faraday-excon (~> 1.1)
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faraday-httpclient (~> 1.0)
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faraday-patron (~> 1.0)
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faraday-rack (~> 1.0)
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ruby2_keywords (>= 0.0.4)
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tilt
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hamster (3.0.0)
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concurrent-ruby (~> 1.0)
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json (2.6.2)
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json-canonicalization (0.3.0)
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rack (~> 2.2)
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logger (1.5.1)
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matrix (0.4.2)
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+
shacl (0.3.0)
|
|
268
|
+
json-ld (~> 3.2)
|
|
269
|
+
rdf (~> 3.2, >= 3.2.8)
|
|
270
|
+
sparql (~> 3.2, >= 3.2.4)
|
|
271
|
+
sxp (~> 1.2)
|
|
272
|
+
shex (0.7.1)
|
|
273
|
+
ebnf (~> 2.2)
|
|
274
|
+
htmlentities (~> 4.3)
|
|
275
|
+
json-ld (~> 3.2)
|
|
276
|
+
json-ld-preloaded (~> 3.2)
|
|
277
|
+
rdf (~> 3.2)
|
|
278
|
+
rdf-xsd (~> 3.2)
|
|
279
|
+
sparql (~> 3.2)
|
|
280
|
+
sxp (~> 1.2)
|
|
281
|
+
sparql (3.2.4)
|
|
282
|
+
builder (~> 3.2)
|
|
283
|
+
ebnf (~> 2.2, >= 2.3.1)
|
|
284
|
+
logger (~> 1.5)
|
|
285
|
+
rdf (~> 3.2, >= 3.2.8)
|
|
286
|
+
rdf-aggregate-repo (~> 3.2)
|
|
287
|
+
rdf-xsd (~> 3.2)
|
|
288
|
+
sparql-client (~> 3.2, >= 3.2.1)
|
|
289
|
+
sxp (~> 1.2, >= 1.2.2)
|
|
290
|
+
sparql-client (3.2.1)
|
|
291
|
+
net-http-persistent (~> 4.0, >= 4.0.1)
|
|
292
|
+
rdf (~> 3.2, >= 3.2.6)
|
|
293
|
+
sxp (1.2.2)
|
|
294
|
+
matrix
|
|
295
|
+
rdf (~> 3.2)
|
|
296
|
+
temple (0.8.2)
|
|
297
|
+
tilt (2.0.11)
|
|
298
|
+
unf (0.1.4)
|
|
299
|
+
unf_ext
|
|
300
|
+
unf_ext (0.0.8.2)
|
|
301
|
+
unicode-display_width (2.2.0)
|
|
302
|
+
unicode-types (1.7.0)
|
|
303
|
+
xml-simple (1.1.9)
|
|
304
|
+
rexml
|
|
305
|
+
|
|
306
|
+
PLATFORMS
|
|
307
|
+
x86_64-linux
|
|
308
|
+
|
|
309
|
+
DEPENDENCIES
|
|
310
|
+
fsp_harvester!
|
|
311
|
+
rake (~> 13.0)
|
|
312
|
+
rspec (~> 3.11)
|
|
313
|
+
rubocop (~> 1.7)
|
|
314
|
+
|
|
315
|
+
RUBY VERSION
|
|
316
|
+
ruby 3.0.0p0
|
|
317
|
+
|
|
318
|
+
BUNDLED WITH
|
|
319
|
+
2.3.12
|
data/LICENSE
ADDED
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
MIT License
|
|
2
|
+
|
|
3
|
+
Copyright (c) 2022 Mark Wilkinson
|
|
4
|
+
|
|
5
|
+
Permission is hereby granted, free of charge, to any person obtaining a copy
|
|
6
|
+
of this software and associated documentation files (the "Software"), to deal
|
|
7
|
+
in the Software without restriction, including without limitation the rights
|
|
8
|
+
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
9
|
+
copies of the Software, and to permit persons to whom the Software is
|
|
10
|
+
furnished to do so, subject to the following conditions:
|
|
11
|
+
|
|
12
|
+
The above copyright notice and this permission notice shall be included in all
|
|
13
|
+
copies or substantial portions of the Software.
|
|
14
|
+
|
|
15
|
+
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
|
16
|
+
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
|
17
|
+
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
|
18
|
+
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
|
19
|
+
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
|
|
20
|
+
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
|
|
21
|
+
SOFTWARE.
|
data/README.md
ADDED
|
@@ -0,0 +1,34 @@
|
|
|
1
|
+
# FspHarvester
|
|
2
|
+
|
|
3
|
+
EXPERIMENTAL: DO NOT USE
|
|
4
|
+
|
|
5
|
+
## Installation
|
|
6
|
+
|
|
7
|
+
Add this line to your application's Gemfile:
|
|
8
|
+
|
|
9
|
+
```ruby
|
|
10
|
+
gem 'fsp_harvester'
|
|
11
|
+
```
|
|
12
|
+
|
|
13
|
+
And then execute:
|
|
14
|
+
|
|
15
|
+
$ bundle install
|
|
16
|
+
|
|
17
|
+
Or install it yourself as:
|
|
18
|
+
|
|
19
|
+
$ gem install fsp_harvester
|
|
20
|
+
|
|
21
|
+
## Usage
|
|
22
|
+
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
## Development
|
|
26
|
+
|
|
27
|
+
|
|
28
|
+
## Contributing
|
|
29
|
+
|
|
30
|
+
Bug reports and pull requests are welcome on GitHub at https://github.com/markwilkinson/fsp_harvester.
|
|
31
|
+
|
|
32
|
+
## License
|
|
33
|
+
|
|
34
|
+
The gem is available as open source under the terms of the [MIT License](https://opensource.org/licenses/MIT).
|
data/Rakefile
ADDED
data/bin/console
ADDED
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
#!/usr/bin/env ruby
|
|
2
|
+
# frozen_string_literal: true
|
|
3
|
+
|
|
4
|
+
require "bundler/setup"
|
|
5
|
+
require "fsp_harvester"
|
|
6
|
+
|
|
7
|
+
# You can add fixtures and/or initialization code here to make experimenting
|
|
8
|
+
# with your gem easier. You can also use a different console, if you like.
|
|
9
|
+
|
|
10
|
+
# (If you use this, don't forget to add pry to your Gemfile!)
|
|
11
|
+
# require "pry"
|
|
12
|
+
# Pry.start
|
|
13
|
+
|
|
14
|
+
require "irb"
|
|
15
|
+
IRB.start(__FILE__)
|
data/bin/setup
ADDED
data/example_test.rb
ADDED
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
# frozen string literal = false
|
|
2
|
+
require 'cgi'
|
|
3
|
+
require 'json'
|
|
4
|
+
require 'uri'
|
|
5
|
+
require 'rdf'
|
|
6
|
+
require 'rdf/turtle'
|
|
7
|
+
require 'sparql'
|
|
8
|
+
require 'fsp_harvester'
|
|
9
|
+
|
|
10
|
+
def test_guid(guid:)
|
|
11
|
+
_links, metadata = FspHarvester::Utils.resolve_guid(guid: guid) # [LinkHeader::Link], FspHarvester::MetadataObject
|
|
12
|
+
|
|
13
|
+
metadata.comments << if metadata.guidtype == 'unknown'
|
|
14
|
+
"FAILURE: The identifier #{guid} did not match any known identification system.\n"
|
|
15
|
+
else
|
|
16
|
+
"SUCCESS: The identifier #{guid} matched known GUID type system #{metadata.guidtype}.\n"
|
|
17
|
+
end
|
|
18
|
+
metadata.comments
|
|
19
|
+
end
|
|
20
|
+
|
|
21
|
+
guid = ARGV[0] || 'https://s11.no/2022/a2a-fair-metrics/07-http-describedby-citeas-linkset-json/'
|
|
22
|
+
response = test_guid(guid: guid)
|
|
23
|
+
|
|
24
|
+
puts response
|
data/lib/constants.rb
ADDED
|
@@ -0,0 +1,106 @@
|
|
|
1
|
+
ACCEPT_ALL_HEADER = { 'Accept' => 'text/turtle, application/ld+json, application/rdf+xml, text/xhtml+xml, application/n3, application/rdf+n3, application/turtle, application/x-turtle, text/n3, text/turtle, text/rdf+n3, text/rdf+turtle, application/n-triples' }
|
|
2
|
+
|
|
3
|
+
TEXT_FORMATS = {
|
|
4
|
+
'text' => ['text/plain']
|
|
5
|
+
}
|
|
6
|
+
|
|
7
|
+
RDF_FORMATS = {
|
|
8
|
+
'jsonld' => ['application/ld+json', 'application/vnd.schemaorg.ld+json'], # NEW FOR DATACITE
|
|
9
|
+
'turtle' => ['text/turtle', 'application/n3', 'application/rdf+n3',
|
|
10
|
+
'application/turtle', 'application/x-turtle', 'text/n3', 'text/turtle',
|
|
11
|
+
'text/rdf+n3', 'text/rdf+turtle'],
|
|
12
|
+
# 'rdfa' => ['text/xhtml+xml', 'application/xhtml+xml'],
|
|
13
|
+
'rdfxml' => ['application/rdf+xml'],
|
|
14
|
+
'triples' => ['application/n-triples', 'application/n-quads', 'application/trig']
|
|
15
|
+
}
|
|
16
|
+
|
|
17
|
+
XML_FORMATS = {
|
|
18
|
+
'xml' => ['text/xhtml', 'text/xml']
|
|
19
|
+
}
|
|
20
|
+
|
|
21
|
+
HTML_FORMATS = {
|
|
22
|
+
'html' => ['text/html', 'text/xhtml+xml', 'application/xhtml+xml']
|
|
23
|
+
}
|
|
24
|
+
|
|
25
|
+
JSON_FORMATS = {
|
|
26
|
+
'json' => ['application/json']
|
|
27
|
+
}
|
|
28
|
+
|
|
29
|
+
DATA_PREDICATES = [
|
|
30
|
+
'http://www.w3.org/ns/ldp#contains',
|
|
31
|
+
'http://xmlns.com/foaf/0.1/primaryTopic',
|
|
32
|
+
'http://purl.obolibrary.org/obo/IAO_0000136', # is about
|
|
33
|
+
'http://purl.obolibrary.org/obo/IAO:0000136', # is about (not the valid URL...)
|
|
34
|
+
'https://www.w3.org/ns/ldp#contains',
|
|
35
|
+
'https://xmlns.com/foaf/0.1/primaryTopic',
|
|
36
|
+
|
|
37
|
+
'http://schema.org/mainEntity',
|
|
38
|
+
'http://schema.org/codeRepository',
|
|
39
|
+
'http://schema.org/distribution',
|
|
40
|
+
'https://schema.org/mainEntity',
|
|
41
|
+
'https://schema.org/codeRepository',
|
|
42
|
+
'https://schema.org/distribution',
|
|
43
|
+
|
|
44
|
+
'http://www.w3.org/ns/dcat#distribution',
|
|
45
|
+
'https://www.w3.org/ns/dcat#distribution',
|
|
46
|
+
'http://www.w3.org/ns/dcat#dataset',
|
|
47
|
+
'https://www.w3.org/ns/dcat#dataset',
|
|
48
|
+
'http://www.w3.org/ns/dcat#downloadURL',
|
|
49
|
+
'https://www.w3.org/ns/dcat#downloadURL',
|
|
50
|
+
'http://www.w3.org/ns/dcat#accessURL',
|
|
51
|
+
'https://www.w3.org/ns/dcat#accessURL',
|
|
52
|
+
|
|
53
|
+
'http://semanticscience.org/resource/SIO_000332', # is about
|
|
54
|
+
'http://semanticscience.org/resource/is-about', # is about
|
|
55
|
+
'https://semanticscience.org/resource/SIO_000332', # is about
|
|
56
|
+
'https://semanticscience.org/resource/is-about', # is about
|
|
57
|
+
'https://purl.obolibrary.org/obo/IAO_0000136' # is about
|
|
58
|
+
]
|
|
59
|
+
|
|
60
|
+
SELF_IDENTIFIER_PREDICATES = [
|
|
61
|
+
'http://purl.org/dc/elements/1.1/identifier',
|
|
62
|
+
'https://purl.org/dc/elements/1.1/identifier',
|
|
63
|
+
'http://purl.org/dc/terms/identifier',
|
|
64
|
+
'http://schema.org/identifier',
|
|
65
|
+
'https://purl.org/dc/terms/identifier',
|
|
66
|
+
'https://schema.org/identifier'
|
|
67
|
+
]
|
|
68
|
+
|
|
69
|
+
GUID_TYPES = { 'inchi' => Regexp.new(/^\w{14}-\w{10}-\w$/),
|
|
70
|
+
'doi' => Regexp.new(%r{^10.\d{4,9}/[-._;()/:A-Z0-9]+$}i),
|
|
71
|
+
'handle1' => Regexp.new(%r{^[^/]+/[^/]+$}i),
|
|
72
|
+
'handle2' => Regexp.new(%r{^\d{4,5}/[-._;()/:A-Z0-9]+$}i), # legacy style 12345/AGB47A
|
|
73
|
+
'uri' => Regexp.new(%r{^\w+:/?/?[^\s]+$}) }
|
|
74
|
+
|
|
75
|
+
CONFIG = File.exist?('config.conf') ? ParseConfig.new('config.conf') : {}
|
|
76
|
+
if CONFIG['extruct'] && CONFIG['extruct']['command'] && !CONFIG['extruct']['command'].empty?
|
|
77
|
+
extruct = config['extruct']['command']
|
|
78
|
+
end
|
|
79
|
+
extruct = 'extruct' unless @extruct_command
|
|
80
|
+
extruct.strip!
|
|
81
|
+
case @extruct
|
|
82
|
+
when /[&|;`$\s]/
|
|
83
|
+
abort 'The Extruct command in the config file appears to be subject to command injection. I will not continue'
|
|
84
|
+
when /echo/i
|
|
85
|
+
abort 'The Extruct command in the config file appears to be subject to command injection. I will not continue'
|
|
86
|
+
end
|
|
87
|
+
EXTRUCT_COMMAND = extruct
|
|
88
|
+
|
|
89
|
+
rdf_command = CONFIG['rdf']['command'] if CONFIG['rdf'] && CONFIG['rdf']['command'] && !CONFIG['rdf']['command'].empty?
|
|
90
|
+
rdf_command = 'rdf' unless @rdf_command
|
|
91
|
+
rdf_command.strip
|
|
92
|
+
case rdf_command
|
|
93
|
+
when /[&|;`$\s]/
|
|
94
|
+
abort 'The RDF command in the config file appears to be subject to command injection. I will not continue'
|
|
95
|
+
when /echo/i
|
|
96
|
+
abort 'The RDF command in the config file appears to be subject to command injection. I will not continue'
|
|
97
|
+
when !(/rdf$/ =~ $_)
|
|
98
|
+
abort "this software requires that Kelloggs Distiller tool is used. The distiller command must end in 'rdf'"
|
|
99
|
+
end
|
|
100
|
+
RDF_COMMAND = rdf_command
|
|
101
|
+
|
|
102
|
+
if CONFIG['tika'] && CONFIG['tika']['command'] && !CONFIG['tika']['command'].empty?
|
|
103
|
+
tika_command = CONFIG['tika']['command']
|
|
104
|
+
end
|
|
105
|
+
tika_command = 'http://localhost:9998/meta' unless @tika_command
|
|
106
|
+
TIKA_COMMAND = tika_command
|
|
@@ -0,0 +1,137 @@
|
|
|
1
|
+
# frozen_string_literal: true
|
|
2
|
+
|
|
3
|
+
require_relative "fsp_harvester/version"
|
|
4
|
+
require "json/ld"
|
|
5
|
+
require "json/ld/preloaded"
|
|
6
|
+
require "json"
|
|
7
|
+
require "linkheaders/processor"
|
|
8
|
+
require "addressable"
|
|
9
|
+
require "tempfile"
|
|
10
|
+
require "xmlsimple"
|
|
11
|
+
require "nokogiri"
|
|
12
|
+
require "parseconfig"
|
|
13
|
+
require "rest-client"
|
|
14
|
+
require "cgi"
|
|
15
|
+
require "digest"
|
|
16
|
+
require "open3"
|
|
17
|
+
require "metainspector"
|
|
18
|
+
require "rdf/xsd"
|
|
19
|
+
require_relative "./metadata_object"
|
|
20
|
+
require_relative "./constants"
|
|
21
|
+
require_relative "./web_utils"
|
|
22
|
+
|
|
23
|
+
module FspHarvester
|
|
24
|
+
class Error < StandardError
|
|
25
|
+
end
|
|
26
|
+
|
|
27
|
+
class Utils
|
|
28
|
+
# @@distillerknown = {} # global, hash of sha256 keys of message bodies - have they been seen before t/f
|
|
29
|
+
# @warnings = JSON.parse(File.read("warnings.json"))
|
|
30
|
+
@meta = FspHarvester::MetadataObject.new
|
|
31
|
+
|
|
32
|
+
def self.resolve_guid(guid:)
|
|
33
|
+
@meta.finalURI = [guid]
|
|
34
|
+
type, url = convertToURL(guid: guid)
|
|
35
|
+
links = Array.new
|
|
36
|
+
unless type
|
|
37
|
+
@meta.warnings << ["006", guid, ""]
|
|
38
|
+
@meta.comments << "FATAL: GUID type not recognized.\n"
|
|
39
|
+
else
|
|
40
|
+
links, @meta = resolve_url(url: url)
|
|
41
|
+
end
|
|
42
|
+
[links, @meta]
|
|
43
|
+
end
|
|
44
|
+
|
|
45
|
+
def self.convertToURL(guid:)
|
|
46
|
+
GUID_TYPES.each do |k, regex|
|
|
47
|
+
if k == "inchi" and regex.match(guid)
|
|
48
|
+
return "inchi", "https://pubchem.ncbi.nlm.nih.gov/rest/rdf/inchikey/#{guid}"
|
|
49
|
+
elsif k == "handle1" and regex.match(guid)
|
|
50
|
+
return "handle", "http://hdl.handle.net/#{guid}"
|
|
51
|
+
elsif k == "handle2" and regex.match(guid)
|
|
52
|
+
return "handle", "http://hdl.handle.net/#{guid}"
|
|
53
|
+
elsif k == "uri" and regex.match(guid)
|
|
54
|
+
return "uri", guid
|
|
55
|
+
elsif k == "doi" and regex.match(guid)
|
|
56
|
+
return "doi", "https://doi.org/#{guid}"
|
|
57
|
+
end
|
|
58
|
+
end
|
|
59
|
+
[nil, nil]
|
|
60
|
+
end
|
|
61
|
+
|
|
62
|
+
def self.typeit(guid:)
|
|
63
|
+
Utils::GUID_TYPES.each do |type, regex|
|
|
64
|
+
return type if regex.match(guid)
|
|
65
|
+
end
|
|
66
|
+
false
|
|
67
|
+
end
|
|
68
|
+
|
|
69
|
+
def self.resolve_url(url:, nolinkheaders: false, header: ACCEPT_ALL_HEADER)
|
|
70
|
+
@meta.guidtype = "uri" if @meta.guidtype.nil?
|
|
71
|
+
warn "\n\n FETCHING #{url} #{header}\n\n"
|
|
72
|
+
response = FspHarvester::WebUtils.fspfetch(url: url, headers: header)
|
|
73
|
+
warn "\n\n head #{response.headers.inspect}\n\n"
|
|
74
|
+
|
|
75
|
+
unless response
|
|
76
|
+
@meta.warnings << ["001", url, header]
|
|
77
|
+
@meta.comments << "WARN: Unable to resolve #{url} using HTTP Accept header #{header}.\n"
|
|
78
|
+
return [[], @meta]
|
|
79
|
+
end
|
|
80
|
+
|
|
81
|
+
@meta.comments << "INFO: following redirection using this header led to the following URL: #{@meta.finalURI.last}. Using the output from this URL for the next few tests..."
|
|
82
|
+
@meta.full_response << response.body
|
|
83
|
+
|
|
84
|
+
links = process_link_headers(response: response) unless nolinkheaders
|
|
85
|
+
[links, @meta]
|
|
86
|
+
end
|
|
87
|
+
|
|
88
|
+
def self.process_link_headers(response:)
|
|
89
|
+
warn "\n\n parsing #{response.headers}\n\n"
|
|
90
|
+
|
|
91
|
+
parser = LinkHeaders::Processor.new(default_anchor: @meta.finalURI.last)
|
|
92
|
+
parser.extract_and_parse(response: response)
|
|
93
|
+
factory = parser.factory # LinkHeaders::LinkFactory
|
|
94
|
+
|
|
95
|
+
citeas = 0
|
|
96
|
+
describedby = 0
|
|
97
|
+
warn "\n\n length #{factory.all_links.length}\n\n"
|
|
98
|
+
|
|
99
|
+
factory.all_links.each do |l|
|
|
100
|
+
case l.relation
|
|
101
|
+
when "cite-as"
|
|
102
|
+
citeas += 1
|
|
103
|
+
when "describedby"
|
|
104
|
+
describedby += 1
|
|
105
|
+
unless l.respond_to? "type"
|
|
106
|
+
@meta.warnings << ["005", l.url, ""]
|
|
107
|
+
@meta.comments << "WARN: The resource does not follow the FAIR Signposting standard, which requires any describedby links to also have a 'type' attribute\n"
|
|
108
|
+
end
|
|
109
|
+
end
|
|
110
|
+
end
|
|
111
|
+
if citeas > 1
|
|
112
|
+
self.check_for_conflicts(factory: factory) # this merelty adsds to the metadata objects if there are conflicts
|
|
113
|
+
end
|
|
114
|
+
|
|
115
|
+
unless citeas == 1 && describedby > 0
|
|
116
|
+
@meta.warnings << ["004", "", ""]
|
|
117
|
+
@meta.comments << "WARN: The resource does not follow the FAIR Signposting standard, which requires exactly one cite-as header, and at least one describedby header\n"
|
|
118
|
+
end
|
|
119
|
+
factory.all_links
|
|
120
|
+
end
|
|
121
|
+
|
|
122
|
+
def self.check_for_conflicts(factory:) # incoming: {"link1" => {"sectiontype1" => value, "sectiontype2" => value2}}
|
|
123
|
+
@meta.comments << "INFO: checking for conflicting cite-as links"
|
|
124
|
+
citeas = Array.new
|
|
125
|
+
factory.all_links.each do |link|
|
|
126
|
+
next unless link.relation == 'cite-as'
|
|
127
|
+
citeas << link.href
|
|
128
|
+
end
|
|
129
|
+
unless citeas == citeas.uniq
|
|
130
|
+
@meta.warnings << ["007", url, header]
|
|
131
|
+
@meta.comments << "WARN: The resource does not follow the FAIR Signposting standard: Found conflicting cite-as link headers\n"
|
|
132
|
+
else
|
|
133
|
+
@meta.comments << "INFO: No conflicting cite-as links found."
|
|
134
|
+
end
|
|
135
|
+
end
|
|
136
|
+
end
|
|
137
|
+
end
|
|
@@ -0,0 +1,28 @@
|
|
|
1
|
+
module FspHarvester
|
|
2
|
+
class MetadataObject
|
|
3
|
+
attr_accessor :hash, :graph, :comments, :warnings, :guidtype, :full_response, :finalURI # a hash of metadata # a RDF.rb graph of metadata # an array of comments # the type of GUID that was detected # will be an array of Net::HTTP::Response
|
|
4
|
+
|
|
5
|
+
def initialize(_params = {}) # get a name from the "new" call, or set a default
|
|
6
|
+
@hash = {}
|
|
7
|
+
@graph = RDF::Graph.new
|
|
8
|
+
@comments = []
|
|
9
|
+
@warnings = []
|
|
10
|
+
@full_response = []
|
|
11
|
+
@finalURI = []
|
|
12
|
+
end
|
|
13
|
+
|
|
14
|
+
def merge_hash(hash)
|
|
15
|
+
# $stderr.puts "\n\n\nIncoming Hash #{hash.inspect}"
|
|
16
|
+
self.hash = self.hash.merge(hash)
|
|
17
|
+
end
|
|
18
|
+
|
|
19
|
+
def merge_rdf(triples) # incoming list of triples
|
|
20
|
+
graph << triples
|
|
21
|
+
graph
|
|
22
|
+
end
|
|
23
|
+
|
|
24
|
+
def rdf
|
|
25
|
+
graph
|
|
26
|
+
end
|
|
27
|
+
end
|
|
28
|
+
end
|
data/lib/swagger.rb
ADDED
|
@@ -0,0 +1,224 @@
|
|
|
1
|
+
class Swagger
|
|
2
|
+
attr_accessor :debug
|
|
3
|
+
attr_accessor :title
|
|
4
|
+
attr_accessor :tests_metric
|
|
5
|
+
attr_accessor :description
|
|
6
|
+
attr_accessor :applies_to_principle
|
|
7
|
+
attr_accessor :organization
|
|
8
|
+
attr_accessor :org_url
|
|
9
|
+
attr_accessor :responsible_developer
|
|
10
|
+
attr_accessor :email
|
|
11
|
+
attr_accessor :developer_ORCiD
|
|
12
|
+
attr_accessor :protocol
|
|
13
|
+
attr_accessor :host
|
|
14
|
+
attr_accessor :basePath
|
|
15
|
+
attr_accessor :path
|
|
16
|
+
attr_accessor :response_description
|
|
17
|
+
attr_accessor :schemas
|
|
18
|
+
attr_accessor :comments
|
|
19
|
+
attr_accessor :fairsharing_key_location
|
|
20
|
+
attr_accessor :score
|
|
21
|
+
attr_accessor :testedGUID
|
|
22
|
+
|
|
23
|
+
def initialize(params = {})
|
|
24
|
+
@debug = params.fetch(:debug, false)
|
|
25
|
+
|
|
26
|
+
@title = params.fetch(:title, 'unnamed')
|
|
27
|
+
@tests_metric = params.fetch(:tests_metric)
|
|
28
|
+
@description = params.fetch(:description, 'default_description')
|
|
29
|
+
@applies_to_principle = params.fetch(:applies_to_principle, 'some principle')
|
|
30
|
+
@version = params.fetch(:version, "0.1")
|
|
31
|
+
@organization = params.fetch(:organization, 'Some Organization')
|
|
32
|
+
@org_url = params.fetch(:org_url)
|
|
33
|
+
@responsible_develper = params.fetch(:responsible_developer, 'Some Person')
|
|
34
|
+
@email = params.fetch(:email)
|
|
35
|
+
@developer_ORCiD = params.fetch(:developer_ORCiD)
|
|
36
|
+
@host = params.fetch(:host)
|
|
37
|
+
@protocol = params.fetch(:protocol, "https")
|
|
38
|
+
@basePath = params.fetch(:basePath)
|
|
39
|
+
@path = params.fetch(:path)
|
|
40
|
+
@response_description = params.fetch(:response_description)
|
|
41
|
+
@schemas = params.fetch(:schemas, [])
|
|
42
|
+
@comments = params.fetch(:comments, [])
|
|
43
|
+
@fairsharing_key_location = params.fetch(:fairsharing_key_location)
|
|
44
|
+
@score = params.fetch(:score, 0)
|
|
45
|
+
@testedGUID = params.fetch(:testedGUID, "")
|
|
46
|
+
|
|
47
|
+
|
|
48
|
+
|
|
49
|
+
end
|
|
50
|
+
|
|
51
|
+
|
|
52
|
+
|
|
53
|
+
def fairsharing_key
|
|
54
|
+
return @fairsharing_key_location
|
|
55
|
+
end
|
|
56
|
+
|
|
57
|
+
|
|
58
|
+
|
|
59
|
+
def getSwagger
|
|
60
|
+
|
|
61
|
+
message = <<"EOF_EOF"
|
|
62
|
+
swagger: '2.0'
|
|
63
|
+
info:
|
|
64
|
+
version: '#{@version}'
|
|
65
|
+
title: "#{@title}"
|
|
66
|
+
x-tests_metric: '#{@tests_metric}'
|
|
67
|
+
description: >-
|
|
68
|
+
#{@description}
|
|
69
|
+
x-applies_to_principle: "#{@applies_to_principle}"
|
|
70
|
+
contact:
|
|
71
|
+
x-organization: "#{@organization}"
|
|
72
|
+
url: "#{@org_url}"
|
|
73
|
+
name: '#{@responsible_develper}'
|
|
74
|
+
x-role: "responsible developer"
|
|
75
|
+
email: #{@email}
|
|
76
|
+
x-id: '#{developer_ORCiD}'
|
|
77
|
+
host: #{@host}
|
|
78
|
+
basePath: #{@basePath}
|
|
79
|
+
schemes:
|
|
80
|
+
- #{@protocol}
|
|
81
|
+
paths:
|
|
82
|
+
#{@path}:
|
|
83
|
+
post:
|
|
84
|
+
parameters:
|
|
85
|
+
- name: content
|
|
86
|
+
in: body
|
|
87
|
+
required: true
|
|
88
|
+
schema:
|
|
89
|
+
$ref: '#/definitions/schemas'
|
|
90
|
+
consumes:
|
|
91
|
+
- application/json
|
|
92
|
+
produces:
|
|
93
|
+
- application/json
|
|
94
|
+
responses:
|
|
95
|
+
"200":
|
|
96
|
+
description: >-
|
|
97
|
+
#{@response_description}
|
|
98
|
+
definitions:
|
|
99
|
+
schemas:
|
|
100
|
+
required:
|
|
101
|
+
EOF_EOF
|
|
102
|
+
|
|
103
|
+
|
|
104
|
+
|
|
105
|
+
self.schemas.keys.each do |key|
|
|
106
|
+
message += " - #{key}\n"
|
|
107
|
+
end
|
|
108
|
+
message += " properties:\n"
|
|
109
|
+
self.schemas.keys.each do |key|
|
|
110
|
+
message += " #{key}:\n"
|
|
111
|
+
message += " type: #{self.schemas[key][0]}\n"
|
|
112
|
+
message += " description: >-\n"
|
|
113
|
+
message += " #{self.schemas[key][1]}\n"
|
|
114
|
+
end
|
|
115
|
+
|
|
116
|
+
return message
|
|
117
|
+
end
|
|
118
|
+
|
|
119
|
+
|
|
120
|
+
|
|
121
|
+
# A utility function that SHOULD NOT BE CALLED EXTERNALLY
|
|
122
|
+
#
|
|
123
|
+
# @param s - subject node
|
|
124
|
+
# @param p - predicate node
|
|
125
|
+
# @param o - object node
|
|
126
|
+
# @param repo - an RDF::Graph object
|
|
127
|
+
def triplify(s, p, o, repo)
|
|
128
|
+
|
|
129
|
+
if s.class == String
|
|
130
|
+
s = s.strip
|
|
131
|
+
end
|
|
132
|
+
if p.class == String
|
|
133
|
+
p = p.strip
|
|
134
|
+
end
|
|
135
|
+
if o.class == String
|
|
136
|
+
o = o.strip
|
|
137
|
+
end
|
|
138
|
+
|
|
139
|
+
unless s.respond_to?('uri')
|
|
140
|
+
|
|
141
|
+
if s.to_s =~ /^\w+:\/?\/?[^\s]+/
|
|
142
|
+
s = RDF::URI.new(s.to_s)
|
|
143
|
+
else
|
|
144
|
+
self.debug and $stderr.puts "Subject #{s.to_s} must be a URI-compatible thingy"
|
|
145
|
+
abort "Subject #{s.to_s} must be a URI-compatible thingy"
|
|
146
|
+
end
|
|
147
|
+
end
|
|
148
|
+
|
|
149
|
+
unless p.respond_to?('uri')
|
|
150
|
+
|
|
151
|
+
if p.to_s =~ /^\w+:\/?\/?[^\s]+/
|
|
152
|
+
p = RDF::URI.new(p.to_s)
|
|
153
|
+
else
|
|
154
|
+
self.debug and $stderr.puts "Predicate #{p.to_s} must be a URI-compatible thingy"
|
|
155
|
+
abort "Predicate #{p.to_s} must be a URI-compatible thingy"
|
|
156
|
+
end
|
|
157
|
+
end
|
|
158
|
+
|
|
159
|
+
unless o.respond_to?('uri')
|
|
160
|
+
if o.to_s =~ /\A\w+:\/?\/?\w[^\s]+/
|
|
161
|
+
o = RDF::URI.new(o.to_s)
|
|
162
|
+
elsif o.to_s =~ /^\d{4}-[01]\d-[0-3]\dT[0-2]\d:[0-5]\d/
|
|
163
|
+
o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.date)
|
|
164
|
+
elsif o.to_s =~ /^[+-]?\d+\.\d+/
|
|
165
|
+
o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.float)
|
|
166
|
+
elsif o.to_s =~ /^[+-]?[0-9]+$/
|
|
167
|
+
o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.int)
|
|
168
|
+
else
|
|
169
|
+
o = RDF::Literal.new(o.to_s, :language => :en)
|
|
170
|
+
end
|
|
171
|
+
end
|
|
172
|
+
|
|
173
|
+
self.debug and $stderr.puts("\n\ninserting #{s.to_s} #{p.to_s} #{o.to_s}\n\n")
|
|
174
|
+
triple = RDF::Statement(s, p, o)
|
|
175
|
+
repo.insert(triple)
|
|
176
|
+
|
|
177
|
+
return true
|
|
178
|
+
end
|
|
179
|
+
|
|
180
|
+
|
|
181
|
+
# A utility function that SHOULD NOT BE CALLED EXTERNALLY
|
|
182
|
+
#
|
|
183
|
+
# @param s - subject node
|
|
184
|
+
# @param p - predicate node
|
|
185
|
+
# @param o - object node
|
|
186
|
+
# @param repo - an RDF::Graph object
|
|
187
|
+
def Swagger.triplify(s, p, o, repo)
|
|
188
|
+
return triplify(s,p,o,repo)
|
|
189
|
+
end
|
|
190
|
+
|
|
191
|
+
def addComment(newcomment)
|
|
192
|
+
self.comments << newcomment.to_s
|
|
193
|
+
#return self.comments
|
|
194
|
+
end
|
|
195
|
+
|
|
196
|
+
def createEvaluationResponse
|
|
197
|
+
|
|
198
|
+
g = RDF::Graph.new
|
|
199
|
+
|
|
200
|
+
dt = Time.now.iso8601
|
|
201
|
+
uri = self.testedGUID
|
|
202
|
+
|
|
203
|
+
me = self.protocol + "://" + self.host + "/" + self.basePath + self.path
|
|
204
|
+
|
|
205
|
+
meURI ="#{me}##{uri}/result-#{dt}"
|
|
206
|
+
meURI =Addressable::URI.escape(meURI)
|
|
207
|
+
|
|
208
|
+
triplify(meURI, "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://fairmetrics.org/resources/metric_evaluation_result", g );
|
|
209
|
+
triplify(meURI, "http://semanticscience.org/resource/SIO_000300", self.score, g )
|
|
210
|
+
triplify(meURI, "http://purl.obolibrary.org/obo/date", dt, g )
|
|
211
|
+
triplify(meURI, "http://schema.org/softwareVersion", VERSION, g )
|
|
212
|
+
triplify(meURI,"http://semanticscience.org/resource/SIO_000332", uri, g)
|
|
213
|
+
|
|
214
|
+
comments = "no comments received. "
|
|
215
|
+
|
|
216
|
+
comments = self.comments.join("\n") if self.comments.size > 0
|
|
217
|
+
triplify(meURI, "http://schema.org/comment", comments, g)
|
|
218
|
+
|
|
219
|
+
return g.dump(:jsonld)
|
|
220
|
+
end
|
|
221
|
+
|
|
222
|
+
end
|
|
223
|
+
|
|
224
|
+
|
data/lib/warnings.json
ADDED
|
@@ -0,0 +1,33 @@
|
|
|
1
|
+
{
|
|
2
|
+
"001": {
|
|
3
|
+
"message": "Unable to resolve guid using Accept headers for Linked Data",
|
|
4
|
+
"linkout": "",
|
|
5
|
+
"severity": "WARN"
|
|
6
|
+
},
|
|
7
|
+
"002": {
|
|
8
|
+
"message": "HTTP Response (203) is non-authoritative",
|
|
9
|
+
"linkout": "",
|
|
10
|
+
"severity": "WARN"
|
|
11
|
+
},
|
|
12
|
+
"003": {
|
|
13
|
+
"message": "HTTP Response indicates failure (500-range)",
|
|
14
|
+
"linkout": "",
|
|
15
|
+
"severity": "WARN"
|
|
16
|
+
},
|
|
17
|
+
"004": {
|
|
18
|
+
"message": "The resource does not follow the FAIR Signposting standard, which requires exactly one cite-as header, and at least one describedby header",
|
|
19
|
+
"linkout": "",
|
|
20
|
+
"severity": "WARN"
|
|
21
|
+
},
|
|
22
|
+
"005": {
|
|
23
|
+
"message": "The resource does not follow the FAIR Signposting standard, which requires any describedby links to also have a 'type' attribute indicating the Accept headers that should be sent with the request",
|
|
24
|
+
"linkout": "",
|
|
25
|
+
"severity": "WARN"
|
|
26
|
+
},
|
|
27
|
+
"006": {
|
|
28
|
+
"message": "GUID type not recognized",
|
|
29
|
+
"linkout": "",
|
|
30
|
+
"severity": "WARN"
|
|
31
|
+
}
|
|
32
|
+
|
|
33
|
+
}
|
data/lib/web_utils.rb
ADDED
|
@@ -0,0 +1,50 @@
|
|
|
1
|
+
module FspHarvester
|
|
2
|
+
|
|
3
|
+
class WebUtils
|
|
4
|
+
def self.fspfetch(url:, headers: ACCEPT_ALL_HEADER) # we will try to retrieve turtle whenever possible
|
|
5
|
+
warn 'In fetch routine now. '
|
|
6
|
+
|
|
7
|
+
begin
|
|
8
|
+
warn "executing call over the Web to #{url}"
|
|
9
|
+
response = RestClient::Request.execute({
|
|
10
|
+
method: :get,
|
|
11
|
+
url: url.to_s,
|
|
12
|
+
# user: user,
|
|
13
|
+
# password: pass,
|
|
14
|
+
headers: headers
|
|
15
|
+
})
|
|
16
|
+
@meta.finalURI |= [response.request.url] if @meta # it's possible to call this method without affecting the metadata object being created by the harvester
|
|
17
|
+
warn "There was a response to the call #{url}"
|
|
18
|
+
warn "There was a response to the call #{response.request.url}"
|
|
19
|
+
warn "Response code #{response.code}"
|
|
20
|
+
if response.code == 203 && @meta
|
|
21
|
+
@meta.warnings << ["002", url, headers]
|
|
22
|
+
@meta.comments << "WARN: Response is non-authoritative (HTTP response code: #{response.code}). Headers may have been manipulated encountered when trying to resolve #{url}\n"
|
|
23
|
+
end
|
|
24
|
+
response
|
|
25
|
+
rescue RestClient::ExceptionWithResponse => e
|
|
26
|
+
warn "EXCEPTION WITH RESPONSE! #{e.response}\n#{e.response.headers}"
|
|
27
|
+
@meta.warnings << ["003", url, headers] if @meta
|
|
28
|
+
@meta.comments << "WARN: HTTP error #{e} encountered when trying to resolve #{url}\n" if @meta
|
|
29
|
+
if e.response.code == 500
|
|
30
|
+
return false
|
|
31
|
+
else
|
|
32
|
+
e.response
|
|
33
|
+
end
|
|
34
|
+
# now we are returning the headers and body that were returned
|
|
35
|
+
rescue RestClient::Exception => e
|
|
36
|
+
warn "EXCEPTION WITH NO RESPONSE! #{e}"
|
|
37
|
+
@meta.warnings << ["003", url, headers] if @meta
|
|
38
|
+
@meta.comments << "WARN: HTTP error #{e} encountered when trying to resolve #{url}\n" if @meta
|
|
39
|
+
false
|
|
40
|
+
# now we are returning 'False', and we will check that with an \"if\" statement in our main code
|
|
41
|
+
rescue Exception => e
|
|
42
|
+
warn "EXCEPTION UNKNOWN! #{e}"
|
|
43
|
+
@meta.warnings << ["003", url, headers] if @meta
|
|
44
|
+
@meta.comments << "WARN: HTTP error #{e} encountered when trying to resolve #{url}\n" if @meta
|
|
45
|
+
false
|
|
46
|
+
# now we are returning 'False', and we will check that with an \"if\" statement in our main code
|
|
47
|
+
end
|
|
48
|
+
end
|
|
49
|
+
end
|
|
50
|
+
end
|
metadata
ADDED
|
@@ -0,0 +1,217 @@
|
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
|
2
|
+
name: fsp_harvester
|
|
3
|
+
version: !ruby/object:Gem::Version
|
|
4
|
+
version: 0.1.2
|
|
5
|
+
platform: ruby
|
|
6
|
+
authors:
|
|
7
|
+
- Mark Wilkinson
|
|
8
|
+
autorequire:
|
|
9
|
+
bindir: exe
|
|
10
|
+
cert_chain: []
|
|
11
|
+
date: 2022-07-27 00:00:00.000000000 Z
|
|
12
|
+
dependencies:
|
|
13
|
+
- !ruby/object:Gem::Dependency
|
|
14
|
+
name: json
|
|
15
|
+
requirement: !ruby/object:Gem::Requirement
|
|
16
|
+
requirements:
|
|
17
|
+
- - "~>"
|
|
18
|
+
- !ruby/object:Gem::Version
|
|
19
|
+
version: '2.0'
|
|
20
|
+
type: :runtime
|
|
21
|
+
prerelease: false
|
|
22
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
23
|
+
requirements:
|
|
24
|
+
- - "~>"
|
|
25
|
+
- !ruby/object:Gem::Version
|
|
26
|
+
version: '2.0'
|
|
27
|
+
- !ruby/object:Gem::Dependency
|
|
28
|
+
name: linkeddata
|
|
29
|
+
requirement: !ruby/object:Gem::Requirement
|
|
30
|
+
requirements:
|
|
31
|
+
- - "~>"
|
|
32
|
+
- !ruby/object:Gem::Version
|
|
33
|
+
version: '3.2'
|
|
34
|
+
type: :runtime
|
|
35
|
+
prerelease: false
|
|
36
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
37
|
+
requirements:
|
|
38
|
+
- - "~>"
|
|
39
|
+
- !ruby/object:Gem::Version
|
|
40
|
+
version: '3.2'
|
|
41
|
+
- !ruby/object:Gem::Dependency
|
|
42
|
+
name: linkheaders-processor
|
|
43
|
+
requirement: !ruby/object:Gem::Requirement
|
|
44
|
+
requirements:
|
|
45
|
+
- - "~>"
|
|
46
|
+
- !ruby/object:Gem::Version
|
|
47
|
+
version: 0.1.9
|
|
48
|
+
type: :runtime
|
|
49
|
+
prerelease: false
|
|
50
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
51
|
+
requirements:
|
|
52
|
+
- - "~>"
|
|
53
|
+
- !ruby/object:Gem::Version
|
|
54
|
+
version: 0.1.9
|
|
55
|
+
- !ruby/object:Gem::Dependency
|
|
56
|
+
name: metainspector
|
|
57
|
+
requirement: !ruby/object:Gem::Requirement
|
|
58
|
+
requirements:
|
|
59
|
+
- - "~>"
|
|
60
|
+
- !ruby/object:Gem::Version
|
|
61
|
+
version: 5.11.2
|
|
62
|
+
type: :runtime
|
|
63
|
+
prerelease: false
|
|
64
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
65
|
+
requirements:
|
|
66
|
+
- - "~>"
|
|
67
|
+
- !ruby/object:Gem::Version
|
|
68
|
+
version: 5.11.2
|
|
69
|
+
- !ruby/object:Gem::Dependency
|
|
70
|
+
name: parseconfig
|
|
71
|
+
requirement: !ruby/object:Gem::Requirement
|
|
72
|
+
requirements:
|
|
73
|
+
- - "~>"
|
|
74
|
+
- !ruby/object:Gem::Version
|
|
75
|
+
version: '1.1'
|
|
76
|
+
type: :runtime
|
|
77
|
+
prerelease: false
|
|
78
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
79
|
+
requirements:
|
|
80
|
+
- - "~>"
|
|
81
|
+
- !ruby/object:Gem::Version
|
|
82
|
+
version: '1.1'
|
|
83
|
+
- !ruby/object:Gem::Dependency
|
|
84
|
+
name: rake
|
|
85
|
+
requirement: !ruby/object:Gem::Requirement
|
|
86
|
+
requirements:
|
|
87
|
+
- - "~>"
|
|
88
|
+
- !ruby/object:Gem::Version
|
|
89
|
+
version: '13.0'
|
|
90
|
+
type: :runtime
|
|
91
|
+
prerelease: false
|
|
92
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
93
|
+
requirements:
|
|
94
|
+
- - "~>"
|
|
95
|
+
- !ruby/object:Gem::Version
|
|
96
|
+
version: '13.0'
|
|
97
|
+
- !ruby/object:Gem::Dependency
|
|
98
|
+
name: rest-client
|
|
99
|
+
requirement: !ruby/object:Gem::Requirement
|
|
100
|
+
requirements:
|
|
101
|
+
- - "~>"
|
|
102
|
+
- !ruby/object:Gem::Version
|
|
103
|
+
version: '2.1'
|
|
104
|
+
type: :runtime
|
|
105
|
+
prerelease: false
|
|
106
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
107
|
+
requirements:
|
|
108
|
+
- - "~>"
|
|
109
|
+
- !ruby/object:Gem::Version
|
|
110
|
+
version: '2.1'
|
|
111
|
+
- !ruby/object:Gem::Dependency
|
|
112
|
+
name: rspec
|
|
113
|
+
requirement: !ruby/object:Gem::Requirement
|
|
114
|
+
requirements:
|
|
115
|
+
- - "~>"
|
|
116
|
+
- !ruby/object:Gem::Version
|
|
117
|
+
version: '3.11'
|
|
118
|
+
type: :runtime
|
|
119
|
+
prerelease: false
|
|
120
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
121
|
+
requirements:
|
|
122
|
+
- - "~>"
|
|
123
|
+
- !ruby/object:Gem::Version
|
|
124
|
+
version: '3.11'
|
|
125
|
+
- !ruby/object:Gem::Dependency
|
|
126
|
+
name: rubocop
|
|
127
|
+
requirement: !ruby/object:Gem::Requirement
|
|
128
|
+
requirements:
|
|
129
|
+
- - "~>"
|
|
130
|
+
- !ruby/object:Gem::Version
|
|
131
|
+
version: '1.7'
|
|
132
|
+
type: :runtime
|
|
133
|
+
prerelease: false
|
|
134
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
135
|
+
requirements:
|
|
136
|
+
- - "~>"
|
|
137
|
+
- !ruby/object:Gem::Version
|
|
138
|
+
version: '1.7'
|
|
139
|
+
- !ruby/object:Gem::Dependency
|
|
140
|
+
name: securerandom
|
|
141
|
+
requirement: !ruby/object:Gem::Requirement
|
|
142
|
+
requirements:
|
|
143
|
+
- - "~>"
|
|
144
|
+
- !ruby/object:Gem::Version
|
|
145
|
+
version: 0.1.0
|
|
146
|
+
type: :runtime
|
|
147
|
+
prerelease: false
|
|
148
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
149
|
+
requirements:
|
|
150
|
+
- - "~>"
|
|
151
|
+
- !ruby/object:Gem::Version
|
|
152
|
+
version: 0.1.0
|
|
153
|
+
- !ruby/object:Gem::Dependency
|
|
154
|
+
name: xml-simple
|
|
155
|
+
requirement: !ruby/object:Gem::Requirement
|
|
156
|
+
requirements:
|
|
157
|
+
- - "~>"
|
|
158
|
+
- !ruby/object:Gem::Version
|
|
159
|
+
version: '1.1'
|
|
160
|
+
type: :runtime
|
|
161
|
+
prerelease: false
|
|
162
|
+
version_requirements: !ruby/object:Gem::Requirement
|
|
163
|
+
requirements:
|
|
164
|
+
- - "~>"
|
|
165
|
+
- !ruby/object:Gem::Version
|
|
166
|
+
version: '1.1'
|
|
167
|
+
description: Metadata harvester that follows the FAIR Signposting specification.
|
|
168
|
+
email:
|
|
169
|
+
- markw@illuminae.com
|
|
170
|
+
executables: []
|
|
171
|
+
extensions: []
|
|
172
|
+
extra_rdoc_files: []
|
|
173
|
+
files:
|
|
174
|
+
- CHANGELOG.md
|
|
175
|
+
- Gemfile
|
|
176
|
+
- Gemfile.lock
|
|
177
|
+
- LICENSE
|
|
178
|
+
- README.md
|
|
179
|
+
- Rakefile
|
|
180
|
+
- bin/console
|
|
181
|
+
- bin/setup
|
|
182
|
+
- example_test.rb
|
|
183
|
+
- lib/constants.rb
|
|
184
|
+
- lib/fsp_harvester.rb
|
|
185
|
+
- lib/fsp_harvester/version.rb
|
|
186
|
+
- lib/metadata_object.rb
|
|
187
|
+
- lib/swagger.rb
|
|
188
|
+
- lib/warnings.json
|
|
189
|
+
- lib/web_utils.rb
|
|
190
|
+
homepage: https://github.com/markwilkinson/FAIR-Signposting-Harvester
|
|
191
|
+
licenses:
|
|
192
|
+
- MIT
|
|
193
|
+
metadata:
|
|
194
|
+
allowed_push_host: https://rubygems.org
|
|
195
|
+
homepage_uri: https://github.com/markwilkinson/FAIR-Signposting-Harvester
|
|
196
|
+
source_code_uri: https://github.com/markwilkinson/FAIR-Signposting-Harvester
|
|
197
|
+
changelog_uri: https://github.com/markwilkinson/FAIR-Signposting-Harvester
|
|
198
|
+
post_install_message:
|
|
199
|
+
rdoc_options: []
|
|
200
|
+
require_paths:
|
|
201
|
+
- lib
|
|
202
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
|
203
|
+
requirements:
|
|
204
|
+
- - ">="
|
|
205
|
+
- !ruby/object:Gem::Version
|
|
206
|
+
version: 3.0.0
|
|
207
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
208
|
+
requirements:
|
|
209
|
+
- - ">="
|
|
210
|
+
- !ruby/object:Gem::Version
|
|
211
|
+
version: '0'
|
|
212
|
+
requirements: []
|
|
213
|
+
rubygems_version: 3.2.28
|
|
214
|
+
signing_key:
|
|
215
|
+
specification_version: 4
|
|
216
|
+
summary: Metadata harvester that follows the FAIR Signposting specification.
|
|
217
|
+
test_files: []
|