fsp_harvester 0.1.11 → 0.1.14
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- checksums.yaml +4 -4
- data/.rspec_status +51 -51
- data/Gemfile.lock +34 -26
- data/lib/config.conf +8 -0
- data/lib/constants.rb +8 -5
- data/lib/{fsp_metadata_external_tools.rb → external_tools.rb} +17 -15
- data/lib/fsp_harvester/version.rb +1 -1
- data/lib/fsp_harvester.rb +8 -106
- data/lib/harvester.rb +28 -0
- data/lib/harvester_utils.rb +78 -0
- data/lib/{fsp_metadata_harvester.rb → metadata_harvester.rb} +51 -33
- data/lib/metadata_object.rb +1 -1
- data/lib/{fsp_metadata_parser.rb → metadata_parser.rb} +28 -13
- data/lib/signposting_tests.rb +9 -6
- data/lib/warnings.json +33 -21
- data/lib/web_utils.rb +7 -7
- metadata +10 -8
- data/lib/swagger.rb +0 -224
data/lib/swagger.rb
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class Swagger
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attr_accessor :debug
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attr_accessor :title
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attr_accessor :tests_metric
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attr_accessor :description
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attr_accessor :applies_to_principle
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attr_accessor :organization
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attr_accessor :org_url
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attr_accessor :responsible_developer
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attr_accessor :email
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attr_accessor :developer_ORCiD
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attr_accessor :protocol
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attr_accessor :host
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attr_accessor :basePath
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attr_accessor :path
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attr_accessor :response_description
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attr_accessor :schemas
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attr_accessor :comments
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attr_accessor :fairsharing_key_location
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attr_accessor :score
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attr_accessor :testedGUID
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def initialize(params = {})
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@debug = params.fetch(:debug, false)
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@title = params.fetch(:title, 'unnamed')
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@tests_metric = params.fetch(:tests_metric)
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@description = params.fetch(:description, 'default_description')
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@applies_to_principle = params.fetch(:applies_to_principle, 'some principle')
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@version = params.fetch(:version, "0.1")
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@organization = params.fetch(:organization, 'Some Organization')
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@org_url = params.fetch(:org_url)
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@responsible_develper = params.fetch(:responsible_developer, 'Some Person')
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@email = params.fetch(:email)
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@developer_ORCiD = params.fetch(:developer_ORCiD)
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@host = params.fetch(:host)
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@protocol = params.fetch(:protocol, "https")
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@basePath = params.fetch(:basePath)
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@path = params.fetch(:path)
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@response_description = params.fetch(:response_description)
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@schemas = params.fetch(:schemas, [])
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@comments = params.fetch(:comments, [])
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@fairsharing_key_location = params.fetch(:fairsharing_key_location)
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@score = params.fetch(:score, 0)
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@testedGUID = params.fetch(:testedGUID, "")
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end
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def fairsharing_key
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return @fairsharing_key_location
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end
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def getSwagger
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message = <<"EOF_EOF"
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swagger: '2.0'
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info:
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version: '#{@version}'
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title: "#{@title}"
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x-tests_metric: '#{@tests_metric}'
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description: >-
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#{@description}
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x-applies_to_principle: "#{@applies_to_principle}"
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contact:
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x-organization: "#{@organization}"
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url: "#{@org_url}"
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name: '#{@responsible_develper}'
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x-role: "responsible developer"
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email: #{@email}
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x-id: '#{developer_ORCiD}'
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host: #{@host}
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basePath: #{@basePath}
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schemes:
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- #{@protocol}
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paths:
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#{@path}:
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post:
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parameters:
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- name: content
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in: body
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required: true
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schema:
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$ref: '#/definitions/schemas'
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consumes:
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- application/json
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produces:
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- application/json
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responses:
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"200":
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description: >-
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#{@response_description}
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definitions:
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schemas:
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required:
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EOF_EOF
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self.schemas.keys.each do |key|
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message += " - #{key}\n"
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end
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message += " properties:\n"
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self.schemas.keys.each do |key|
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message += " #{key}:\n"
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message += " type: #{self.schemas[key][0]}\n"
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message += " description: >-\n"
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message += " #{self.schemas[key][1]}\n"
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end
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return message
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end
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# A utility function that SHOULD NOT BE CALLED EXTERNALLY
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#
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# @param s - subject node
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# @param p - predicate node
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# @param o - object node
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# @param repo - an RDF::Graph object
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def triplify(s, p, o, repo)
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if s.class == String
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s = s.strip
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end
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if p.class == String
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p = p.strip
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end
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if o.class == String
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o = o.strip
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end
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unless s.respond_to?('uri')
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if s.to_s =~ /^\w+:\/?\/?[^\s]+/
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s = RDF::URI.new(s.to_s)
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else
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self.debug and $stderr.puts "Subject #{s.to_s} must be a URI-compatible thingy"
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abort "Subject #{s.to_s} must be a URI-compatible thingy"
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end
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end
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unless p.respond_to?('uri')
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if p.to_s =~ /^\w+:\/?\/?[^\s]+/
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p = RDF::URI.new(p.to_s)
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else
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self.debug and $stderr.puts "Predicate #{p.to_s} must be a URI-compatible thingy"
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abort "Predicate #{p.to_s} must be a URI-compatible thingy"
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end
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end
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unless o.respond_to?('uri')
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if o.to_s =~ /\A\w+:\/?\/?\w[^\s]+/
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o = RDF::URI.new(o.to_s)
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elsif o.to_s =~ /^\d{4}-[01]\d-[0-3]\dT[0-2]\d:[0-5]\d/
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o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.date)
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elsif o.to_s =~ /^[+-]?\d+\.\d+/
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o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.float)
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elsif o.to_s =~ /^[+-]?[0-9]+$/
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o = RDF::Literal.new(o.to_s, :datatype => RDF::XSD.int)
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else
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o = RDF::Literal.new(o.to_s, :language => :en)
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end
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end
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self.debug and $stderr.puts("\n\ninserting #{s.to_s} #{p.to_s} #{o.to_s}\n\n")
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triple = RDF::Statement(s, p, o)
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repo.insert(triple)
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return true
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end
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# A utility function that SHOULD NOT BE CALLED EXTERNALLY
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#
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# @param s - subject node
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# @param p - predicate node
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# @param o - object node
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# @param repo - an RDF::Graph object
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def Swagger.triplify(s, p, o, repo)
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return triplify(s,p,o,repo)
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end
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def addComment(newcomment)
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self.comments << newcomment.to_s
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#return self.comments
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end
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def createEvaluationResponse
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g = RDF::Graph.new
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dt = Time.now.iso8601
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uri = self.testedGUID
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me = self.protocol + "://" + self.host + "/" + self.basePath + self.path
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meURI ="#{me}##{uri}/result-#{dt}"
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meURI =Addressable::URI.escape(meURI)
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triplify(meURI, "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://fairmetrics.org/resources/metric_evaluation_result", g );
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triplify(meURI, "http://semanticscience.org/resource/SIO_000300", self.score, g )
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triplify(meURI, "http://purl.obolibrary.org/obo/date", dt, g )
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triplify(meURI, "http://schema.org/softwareVersion", VERSION, g )
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triplify(meURI,"http://semanticscience.org/resource/SIO_000332", uri, g)
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comments = "no comments received. "
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comments = self.comments.join("\n") if self.comments.size > 0
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triplify(meURI, "http://schema.org/comment", comments, g)
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return g.dump(:jsonld)
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end
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end
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