fselector 1.0.1 → 1.1.0

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Files changed (55) hide show
  1. data/ChangeLog +9 -0
  2. data/README.md +62 -26
  3. data/lib/fselector.rb +1 -1
  4. data/lib/fselector/algo_base/base.rb +89 -34
  5. data/lib/fselector/algo_base/base_CFS.rb +20 -7
  6. data/lib/fselector/algo_base/base_Relief.rb +5 -5
  7. data/lib/fselector/algo_base/base_ReliefF.rb +11 -3
  8. data/lib/fselector/algo_base/base_discrete.rb +8 -0
  9. data/lib/fselector/algo_continuous/BSS_WSS.rb +3 -1
  10. data/lib/fselector/algo_continuous/CFS_c.rb +3 -1
  11. data/lib/fselector/algo_continuous/FTest.rb +2 -0
  12. data/lib/fselector/algo_continuous/PMetric.rb +4 -2
  13. data/lib/fselector/algo_continuous/ReliefF_c.rb +11 -0
  14. data/lib/fselector/algo_continuous/Relief_c.rb +14 -3
  15. data/lib/fselector/algo_continuous/TScore.rb +5 -3
  16. data/lib/fselector/algo_continuous/WilcoxonRankSum.rb +5 -3
  17. data/lib/fselector/algo_discrete/Accuracy.rb +2 -0
  18. data/lib/fselector/algo_discrete/AccuracyBalanced.rb +2 -0
  19. data/lib/fselector/algo_discrete/BiNormalSeparation.rb +3 -1
  20. data/lib/fselector/algo_discrete/CFS_d.rb +3 -0
  21. data/lib/fselector/algo_discrete/ChiSquaredTest.rb +3 -0
  22. data/lib/fselector/algo_discrete/CorrelationCoefficient.rb +2 -0
  23. data/lib/fselector/algo_discrete/DocumentFrequency.rb +2 -0
  24. data/lib/fselector/algo_discrete/F1Measure.rb +2 -0
  25. data/lib/fselector/algo_discrete/FastCorrelationBasedFilter.rb +12 -1
  26. data/lib/fselector/algo_discrete/FishersExactTest.rb +3 -1
  27. data/lib/fselector/algo_discrete/GMean.rb +2 -0
  28. data/lib/fselector/algo_discrete/GSSCoefficient.rb +2 -0
  29. data/lib/fselector/algo_discrete/GiniIndex.rb +3 -1
  30. data/lib/fselector/algo_discrete/INTERACT.rb +3 -0
  31. data/lib/fselector/algo_discrete/InformationGain.rb +12 -1
  32. data/lib/fselector/algo_discrete/LasVegasFilter.rb +3 -0
  33. data/lib/fselector/algo_discrete/LasVegasIncremental.rb +3 -0
  34. data/lib/fselector/algo_discrete/MatthewsCorrelationCoefficient.rb +2 -0
  35. data/lib/fselector/algo_discrete/McNemarsTest.rb +3 -0
  36. data/lib/fselector/algo_discrete/MutualInformation.rb +3 -1
  37. data/lib/fselector/algo_discrete/OddsRatio.rb +2 -0
  38. data/lib/fselector/algo_discrete/OddsRatioNumerator.rb +2 -0
  39. data/lib/fselector/algo_discrete/Power.rb +4 -1
  40. data/lib/fselector/algo_discrete/Precision.rb +2 -0
  41. data/lib/fselector/algo_discrete/ProbabilityRatio.rb +2 -0
  42. data/lib/fselector/algo_discrete/Random.rb +3 -0
  43. data/lib/fselector/algo_discrete/ReliefF_d.rb +3 -1
  44. data/lib/fselector/algo_discrete/Relief_d.rb +4 -2
  45. data/lib/fselector/algo_discrete/Sensitivity.rb +2 -0
  46. data/lib/fselector/algo_discrete/Specificity.rb +2 -0
  47. data/lib/fselector/algo_discrete/SymmetricalUncertainty.rb +4 -1
  48. data/lib/fselector/discretizer.rb +7 -7
  49. data/lib/fselector/ensemble.rb +375 -115
  50. data/lib/fselector/entropy.rb +2 -2
  51. data/lib/fselector/fileio.rb +83 -70
  52. data/lib/fselector/normalizer.rb +2 -2
  53. data/lib/fselector/replace_missing_values.rb +137 -3
  54. data/lib/fselector/util.rb +17 -5
  55. metadata +4 -4
data/lib/fselector/util.rb CHANGED
@@ -3,7 +3,7 @@
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  #
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  class Array
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  # summation
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- # @return [Float] sum
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+ # @return [Float] sum, no need to use .to_f
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  def sum
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  self.inject(0.0) { |s, i| s+i }
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  end
@@ -17,6 +17,15 @@ class Array
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  alias :mean :ave # make mean as an alias of ave
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+ # median
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+ # @return [Float] median
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+ def median
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+ len = self.size
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+ sorted = self.sort
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+ (len % 2 == 1) ? sorted[len/2] : (sorted[len/2-1]+sorted[len/2]).to_f/2
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+ end
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+
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+
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  # variance
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  # @return [Float] variance
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  def var
@@ -41,8 +50,8 @@ class Array
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  # @return [Array<Float>] scaled numbers
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  def to_scale(min=0.0, max=1.0)
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  if (min >= max)
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- abort "[#{__FILE__}@#{__LINE__}]: "+
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- "min must be smaller than max"
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+ abort "[#{__FILE__}@#{__LINE__}]: \n"+
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+ " min must be smaller than max!"
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  end
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  old_min = self.min
@@ -78,12 +87,15 @@ class Array
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  end
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- # pearson's correlation coefficient,
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+ # Pearson's correlation coefficient,
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  # two vectors must be of the same length
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  #
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  # @param [Array] v the second vector
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- # @return [Float] pearson's r
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+ # @return [Float] Pearson's r
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  def pearson_r(v)
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+ abort "[#{__FILE__}@#{__LINE__}]: \n"+
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+ " two vectors must be of the same length!" if self.size != v.size
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+
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  sm, vm = self.ave, v.ave
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  a, b, c = 0.0, 0.0, 0.0
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metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: fselector
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  version: !ruby/object:Gem::Version
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- version: 1.0.1
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+ version: 1.1.0
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  prerelease:
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  platform: ruby
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  authors:
@@ -9,11 +9,11 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2012-05-08 00:00:00.000000000 Z
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+ date: 2012-05-15 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rinruby
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- requirement: &25797132 !ruby/object:Gem::Requirement
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+ requirement: &28540080 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -21,7 +21,7 @@ dependencies:
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  version: 2.0.2
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  type: :runtime
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  prerelease: false
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- version_requirements: *25797132
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+ version_requirements: *28540080
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  description: FSelector is a Ruby gem that aims to integrate various feature selection/ranking
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  algorithms and related functions into one single package. Welcome to contact me
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  (need47@gmail.com) if you'd like to contribute your own algorithms or report a bug.