find_beads 0.9.6-java → 0.9.7-java

data/lib/find_beads.rb

@@ -372,7 +372,11 @@ module FindBeads
     normalization = if do_normalization then
                       auto_00 = compute_single_bead_correlation(mask, im, ch0, ch0, cen, id, bead_radius, false)[:norm_corr]
                       auto_11 = compute_single_bead_correlation(mask, im, ch1, ch1, cen, id, bead_radius, false)[:norm_corr]
-                      Math.sqrt(auto_00 * auto_11)*(auto_00.abs/auto_00)
+                      begin
+                        Math.sqrt(auto_00 * auto_11)*(auto_00.abs/auto_00)
+                      rescue Math::DomainError
+                        Float::NAN
+                      end
                     else
                       1
                     end
@@ -515,7 +519,7 @@ module FindBeads
              else
                met = IntensityPerPixelMetric.new
                q = met.quantify(mask, is)
-               Java::edu.stanford.cfuller.imageanalysistools.frontend.LocalAnalysis.generateDataOutputString(q, nil)
+               Java::edu.stanford.cfuller.imageanalysistools.frontend.LocalAnalysis.generateDataOutputString(q, nil).strip.gsub(" ", ",")
              end
 
     write_output(fn, outdat, mask)

data/lib/find_beads/version.rb

@@ -26,7 +26,7 @@
 
 module FindBeads
 
-  VERSION = '0.9.6'
+  VERSION = '0.9.7'
 
 end
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: find_beads
 version: !ruby/object:Gem::Version
-  version: 0.9.6
+  version: 0.9.7
   prerelease:
 platform: java
 authors: