find_beads 0.9.6-java → 0.9.7-java
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- data/lib/find_beads.rb +6 -2
- data/lib/find_beads/version.rb +1 -1
- metadata +1 -1
data/lib/find_beads.rb
CHANGED
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@@ -372,7 +372,11 @@ module FindBeads
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372
372
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normalization = if do_normalization then
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373
373
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auto_00 = compute_single_bead_correlation(mask, im, ch0, ch0, cen, id, bead_radius, false)[:norm_corr]
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374
374
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auto_11 = compute_single_bead_correlation(mask, im, ch1, ch1, cen, id, bead_radius, false)[:norm_corr]
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375
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-
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375
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+
begin
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376
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Math.sqrt(auto_00 * auto_11)*(auto_00.abs/auto_00)
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377
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rescue Math::DomainError
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378
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+
Float::NAN
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379
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+
end
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376
380
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else
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377
381
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1
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378
382
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end
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@@ -515,7 +519,7 @@ module FindBeads
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515
519
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else
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516
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met = IntensityPerPixelMetric.new
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517
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q = met.quantify(mask, is)
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518
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-
Java::edu.stanford.cfuller.imageanalysistools.frontend.LocalAnalysis.generateDataOutputString(q, nil)
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522
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+
Java::edu.stanford.cfuller.imageanalysistools.frontend.LocalAnalysis.generateDataOutputString(q, nil).strip.gsub(" ", ",")
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519
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end
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520
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521
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write_output(fn, outdat, mask)
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data/lib/find_beads/version.rb
CHANGED