find_beads 0.9.1-java → 0.9.2-java
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- data/lib/find_beads/version.rb +1 -1
- data/lib/find_beads.rb +4 -5
- metadata +1 -1
data/lib/find_beads/version.rb
CHANGED
data/lib/find_beads.rb
CHANGED
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@@ -30,16 +30,15 @@ require 'rimageanalysistools/image_shortcuts'
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require 'rimageanalysistools/create_parameters'
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require 'rimageanalysistools/graythresh'
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33
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-
require 'edu/stanford/cfuller/imageanalysistools/resources/common_methods'
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-
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require 'trollop'
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35
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+
java_import Java::edu.stanford.cfuller.imageanalysistools.image.ImageFactory
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+
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##
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# Functions for segmenting and quantifying beads.
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#
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module FindBeads
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-
include IATScripting
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java_import Java::edu.stanford.cfuller.imageanalysistools.image.ImageCoordinate
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java_import Java::edu.stanford.cfuller.imageanalysistools.image.ImageSet
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@@ -292,7 +291,7 @@ module FindBeads
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p = RImageAnalysisTools.create_parameter_dictionary(min_size: min_size, max_size: max_size)
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-
im_cp =
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294
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+
im_cp = ImageFactory.create_writable(to_seg)
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mstf = MaximumSeparabilityThresholdingFilter.new
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@@ -322,7 +321,7 @@ module FindBeads
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cens = centroids(to_seg)
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325
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-
final_mask =
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324
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+
final_mask = ImageFactory.create_writable(to_seg)
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radius = rad
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