fhir_dstu2_models 1.0.7 → 1.1.0
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- checksums.yaml +4 -4
- data/.codeclimate.yml +1 -0
- data/.github/workflows/ruby.yml +26 -0
- data/.gitignore +3 -1
- data/.rubocop.yml +16 -5
- data/.rubocop_todo.yml +286 -28
- data/Gemfile.lock +55 -53
- data/LICENSE +201 -0
- data/README.md +11 -1
- data/fhir_dstu2_models.gemspec +4 -4
- data/lib/fhir_dstu2_models/bootstrap/generator.rb +1 -1
- data/lib/fhir_dstu2_models/bootstrap/json.rb +2 -0
- data/lib/fhir_dstu2_models/bootstrap/model.rb +21 -0
- data/lib/fhir_dstu2_models/fhir_ext/structure_definition.rb +36 -39
- data/lib/fhir_dstu2_models/version.rb +1 -1
- metadata +13 -32
- data/.travis.yml +0 -21
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 54f49487a37795261c72615095996fa66403bfad69901301bf94e108848c785c
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4
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data.tar.gz: 38b9da91f0e4ba38c801b7004ac3434bd89467e60a73cceceb66a0334c21268c
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SHA512:
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-
metadata.gz:
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7
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data.tar.gz:
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+
metadata.gz: ad5546d62aaf98a88a3682a66ffc0b05cbecf73c3f862ea1b0621f9ebd2bdb0b69f695c8081082d72830c30eaff9757160496b73a62b0b2bfd47b52eb45b37bb
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7
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+
data.tar.gz: dd97e4d646c1153df883574be1cef7c38c3659c8873eb82fd153e6eae8e7ddee26f0c25ad3bacbbfc51a7d25018dfce3b5a418f5740a314d2345a04f8580c6b6
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data/.codeclimate.yml
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name: Ruby
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on:
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push:
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branches: [ master ]
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pull_request:
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branches: [ master ]
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jobs:
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test:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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ruby-version: ['2.6', '2.7']
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steps:
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- uses: actions/checkout@v2
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- name: Set up Ruby
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uses: ruby/setup-ruby@v1
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with:
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ruby-version: ${{ matrix.ruby-version }}
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bundler-cache: true # runs 'bundle install' and caches installed gems automatically
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- name: Run tests
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run: bundle exec rake
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- name: Rubocop
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run: bundle exec rubocop
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data/.gitignore
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data/.rubocop.yml
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inherit_from: .rubocop_todo.yml
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- 'lib/
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- 'lib/fhir_stu3_models/fhir/**/*'
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- 'lib/fhir_stu3_models/fluentpath/evaluate.rb'
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- 'lib/**/*.rake'
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inherit_mode:
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merge:
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- Exclude
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data/.rubocop_todo.yml
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# This configuration was generated by
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# `rubocop --auto-gen-config`
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# on
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# on 2021-03-30 17:40:28 -0400 using RuboCop version 0.80.0.
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# The point is for the user to remove these configuration records
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# one by one as the offenses are removed from the code base.
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# Note that changes in the inspected code, or installation of new
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# Offense count: 23
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# Cop supports --auto-correct.
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# Offense count:
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# Offense count: 55
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Exclude:
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- 'lib/fhir_dstu2_models/bootstrap/definitions.rb'
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- 'lib/fhir_dstu2_models/bootstrap/generator.rb'
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- 'lib/fhir_dstu2_models/bootstrap/hashable.rb'
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- 'lib/fhir_dstu2_models/bootstrap/model.rb'
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- 'lib/fhir_dstu2_models/bootstrap/preprocess.rb'
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- 'lib/fhir_dstu2_models/bootstrap/xml.rb'
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- 'lib/fhir_dstu2_models/deprecate.rb'
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- 'lib/fhir_dstu2_models/fhir_ext/element_definition.rb'
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- 'lib/fhir_dstu2_models/fhir_ext/structure_definition.rb'
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- 'lib/fhir_dstu2_models/fhir_ext/structure_definition_compare.rb'
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- 'lib/fhir_dstu2_models/fluentpath/evaluate.rb'
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- 'lib/fhir_dstu2_models/fluentpath/parse.rb'
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# Offense count: 1
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Layout/EmptyLines:
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- 'lib/fhir_dstu2_models/fhir/resources/ClaimResponse.rb'
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# Offense count: 1
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# Cop supports --auto-correct.
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# Configuration parameters: EnforcedStyle.
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# SupportedStyles: empty_lines, empty_lines_except_namespace, empty_lines_special, no_empty_lines, beginning_only, ending_only
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- 'lib/fhir_dstu2_models/fhir/resources/ClaimResponse.rb'
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# Offense count: 2
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# Configuration parameters: EnforcedStyle.
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# SupportedStyles: empty_lines, empty_lines_except_namespace, empty_lines_special, no_empty_lines
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Layout/EmptyLinesAroundModuleBody:
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- 'lib/fhir_dstu2_models/fhir/metadata.rb'
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# Offense count: 1
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# Cop supports --auto-correct.
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- 'lib/fhir_dstu2_models/bootstrap/hashable.rb'
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# Offense count: 19223
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# Cop supports --auto-correct.
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# Configuration parameters: AllowForAlignment, EnforcedStyleForExponentOperator.
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# SupportedStylesForExponentOperator: space, no_space
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Layout/SpaceAroundOperators:
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Enabled: false
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# Offense count: 10414
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# Configuration parameters: EnforcedStyle, EnforcedStyleForEmptyBraces.
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# SupportedStyles: space, no_space, compact
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# SupportedStylesForEmptyBraces: space, no_space
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Layout/SpaceInsideHashLiteralBraces:
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Enabled: false
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# Offense count: 120
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# Configuration parameters: EnforcedStyle.
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# SupportedStyles: final_newline, final_blank_line
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# Configuration parameters: AllowInHeredoc.
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# Offense count: 2
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- 'lib/fhir_dstu2_models/bootstrap/json.rb'
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- 'lib/fhir_dstu2_models/fhir_ext/structure_definition_finding.rb'
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# Offense count: 41
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# AllowedAcronyms: CLI, DSL, ACL, API, ASCII, CPU, CSS, DNS, EOF, GUID, HTML, HTTP, HTTPS, ID, IP, JSON, LHS, QPS, RAM, RHS, RPC, SLA, SMTP, SQL, SSH, TCP, TLS, TTL, UDP, UI, UID, UUID, URI, URL, UTF8, VM, XML, XMPP, XSRF, XSS
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|
+
|
|
215
|
+
# Offense count: 1
|
|
216
|
+
# Cop supports --auto-correct.
|
|
217
|
+
# Configuration parameters: EnforcedStyle.
|
|
218
|
+
# SupportedStyles: line_count_dependent, lambda, literal
|
|
219
|
+
Style/Lambda:
|
|
220
|
+
Exclude:
|
|
221
|
+
- 'lib/fhir_dstu2_models/fhir_ext/structure_definition.rb'
|
|
222
|
+
|
|
223
|
+
# Offense count: 2
|
|
224
|
+
# Cop supports --auto-correct.
|
|
225
|
+
# Configuration parameters: EnforcedStyle.
|
|
226
|
+
# SupportedStyles: call, braces
|
|
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Style/LambdaCall:
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|
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|
+
Exclude:
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229
|
+
- 'lib/fhir_dstu2_models/fhir_ext/structure_definition.rb'
|
|
230
|
+
|
|
231
|
+
# Offense count: 1
|
|
232
|
+
Style/MethodMissingSuper:
|
|
233
|
+
Exclude:
|
|
234
|
+
- 'lib/fhir_dstu2_models/bootstrap/model.rb'
|
|
235
|
+
|
|
236
|
+
# Offense count: 1
|
|
237
|
+
Style/MissingRespondToMissing:
|
|
238
|
+
Exclude:
|
|
239
|
+
- 'lib/fhir_dstu2_models/bootstrap/model.rb'
|
|
240
|
+
|
|
241
|
+
# Offense count: 3
|
|
242
|
+
Style/MultipleComparison:
|
|
58
243
|
Exclude:
|
|
59
|
-
- 'spec/**/*'
|
|
60
|
-
- 'test/**/*'
|
|
61
244
|
- 'lib/fhir_dstu2_models/bootstrap/definitions.rb'
|
|
62
|
-
|
|
245
|
+
|
|
246
|
+
# Offense count: 494
|
|
247
|
+
# Cop supports --auto-correct.
|
|
248
|
+
# Configuration parameters: EnforcedStyle.
|
|
249
|
+
# SupportedStyles: literals, strict
|
|
250
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Style/MutableConstant:
|
|
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|
+
Enabled: false
|
|
252
|
+
|
|
253
|
+
# Offense count: 3
|
|
254
|
+
# Cop supports --auto-correct.
|
|
255
|
+
# Configuration parameters: AutoCorrect, EnforcedStyle, IgnoredMethods.
|
|
256
|
+
# SupportedStyles: predicate, comparison
|
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|
+
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|
|
258
|
+
Exclude:
|
|
259
|
+
- 'spec/**/*'
|
|
260
|
+
- 'lib/fhir_dstu2_models/fhir_ext/structure_definition_compare.rb'
|
|
261
|
+
- 'lib/fhir_dstu2_models/fluentpath/evaluate.rb'
|
|
262
|
+
|
|
263
|
+
# Offense count: 1
|
|
264
|
+
# Cop supports --auto-correct.
|
|
265
|
+
Style/OrAssignment:
|
|
266
|
+
Exclude:
|
|
63
267
|
- 'lib/fhir_dstu2_models/bootstrap/generator.rb'
|
|
268
|
+
|
|
269
|
+
# Offense count: 1
|
|
270
|
+
# Cop supports --auto-correct.
|
|
271
|
+
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|
|
272
|
+
Exclude:
|
|
273
|
+
- 'lib/fhir_dstu2_models/fluentpath/expression.rb'
|
|
274
|
+
|
|
275
|
+
# Offense count: 6
|
|
276
|
+
# Cop supports --auto-correct.
|
|
277
|
+
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|
|
278
|
+
Exclude:
|
|
279
|
+
- 'lib/fhir_dstu2_models/fluentpath/evaluate.rb'
|
|
280
|
+
|
|
281
|
+
# Offense count: 18
|
|
282
|
+
# Cop supports --auto-correct.
|
|
283
|
+
# Configuration parameters: EnforcedStyle.
|
|
284
|
+
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|
|
285
|
+
Style/RescueStandardError:
|
|
286
|
+
Exclude:
|
|
287
|
+
- 'lib/fhir_dstu2_models/bootstrap/definitions.rb'
|
|
64
288
|
- 'lib/fhir_dstu2_models/bootstrap/hashable.rb'
|
|
65
289
|
- 'lib/fhir_dstu2_models/bootstrap/json.rb'
|
|
66
290
|
- 'lib/fhir_dstu2_models/bootstrap/model.rb'
|
|
67
|
-
- 'lib/fhir_dstu2_models/bootstrap/preprocess.rb'
|
|
68
|
-
- 'lib/fhir_dstu2_models/bootstrap/template.rb'
|
|
69
291
|
- 'lib/fhir_dstu2_models/bootstrap/xml.rb'
|
|
70
292
|
- 'lib/fhir_dstu2_models/fhir.rb'
|
|
71
293
|
- 'lib/fhir_dstu2_models/fhir_ext/structure_definition.rb'
|
|
72
294
|
- 'lib/fhir_dstu2_models/fhir_ext/structure_definition_finding.rb'
|
|
295
|
+
- 'lib/fhir_dstu2_models/fluentpath/evaluate.rb'
|
|
73
296
|
- 'lib/fhir_dstu2_models/fluentpath/expression.rb'
|
|
74
297
|
- 'lib/fhir_dstu2_models/fluentpath/parse.rb'
|
|
75
298
|
|
|
299
|
+
# Offense count: 4
|
|
300
|
+
# Cop supports --auto-correct.
|
|
301
|
+
# Configuration parameters: ConvertCodeThatCanStartToReturnNil, AllowedMethods.
|
|
302
|
+
# AllowedMethods: present?, blank?, presence, try, try!
|
|
303
|
+
Style/SafeNavigation:
|
|
304
|
+
Exclude:
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|
305
|
+
- 'lib/fhir_dstu2_models/bootstrap/definitions.rb'
|
|
306
|
+
- 'lib/fhir_dstu2_models/bootstrap/xml.rb'
|
|
307
|
+
- 'lib/fhir_dstu2_models/fhir_ext/structure_definition.rb'
|
|
308
|
+
|
|
76
309
|
# Offense count: 1
|
|
77
|
-
|
|
310
|
+
# Cop supports --auto-correct.
|
|
311
|
+
# Configuration parameters: EnforcedStyle.
|
|
312
|
+
# SupportedStyles: require_parentheses, require_no_parentheses
|
|
313
|
+
Style/StabbyLambdaParentheses:
|
|
78
314
|
Exclude:
|
|
79
|
-
- 'lib/fhir_dstu2_models/
|
|
315
|
+
- 'lib/fhir_dstu2_models/fhir_ext/structure_definition.rb'
|
|
316
|
+
|
|
317
|
+
# Offense count: 6
|
|
318
|
+
# Cop supports --auto-correct.
|
|
319
|
+
# Configuration parameters: .
|
|
320
|
+
# SupportedStyles: percent, brackets
|
|
321
|
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Style/SymbolArray:
|
|
322
|
+
EnforcedStyle: percent
|
|
323
|
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MinSize: 13
|
|
324
|
+
|
|
325
|
+
# Offense count: 1
|
|
326
|
+
# Cop supports --auto-correct.
|
|
327
|
+
Style/WhileUntilModifier:
|
|
328
|
+
Exclude:
|
|
329
|
+
- 'lib/fhir_dstu2_models/fluentpath/evaluate.rb'
|
|
330
|
+
|
|
331
|
+
# Offense count: 624
|
|
332
|
+
# Cop supports --auto-correct.
|
|
333
|
+
# Configuration parameters: WordRegex.
|
|
334
|
+
# SupportedStyles: percent, brackets
|
|
335
|
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|
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|
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EnforcedStyle: percent
|
|
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|
data/Gemfile.lock
CHANGED
|
@@ -1,28 +1,26 @@
|
|
|
1
1
|
PATH
|
|
2
2
|
remote: .
|
|
3
3
|
specs:
|
|
4
|
-
fhir_dstu2_models (1.0
|
|
4
|
+
fhir_dstu2_models (1.1.0)
|
|
5
5
|
bcp47 (>= 0.3)
|
|
6
6
|
date_time_precision (>= 0.8)
|
|
7
|
-
mime-types (>=
|
|
8
|
-
nokogiri (>= 1.
|
|
7
|
+
mime-types (>= 3.0)
|
|
8
|
+
nokogiri (>= 1.11.4)
|
|
9
9
|
|
|
10
10
|
GEM
|
|
11
11
|
remote: https://rubygems.org/
|
|
12
12
|
specs:
|
|
13
|
-
ast (2.4.
|
|
13
|
+
ast (2.4.2)
|
|
14
14
|
bcp47 (0.3.3)
|
|
15
15
|
i18n
|
|
16
|
-
codeclimate-test-reporter (1.0.8)
|
|
17
|
-
simplecov (<= 0.13)
|
|
18
16
|
coderay (1.1.2)
|
|
19
|
-
concurrent-ruby (1.1.
|
|
17
|
+
concurrent-ruby (1.1.9)
|
|
20
18
|
date_time_precision (0.8.1)
|
|
21
19
|
diff-lcs (1.3)
|
|
22
20
|
docile (1.1.5)
|
|
23
|
-
ffi (1.
|
|
21
|
+
ffi (1.11.1)
|
|
24
22
|
formatador (0.2.5)
|
|
25
|
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guard (2.
|
|
23
|
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guard (2.15.0)
|
|
26
24
|
formatador (>= 0.2.4)
|
|
27
25
|
listen (>= 2.7, < 4.0)
|
|
28
26
|
lumberjack (>= 1.0.12, < 2.0)
|
|
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|
|
|
39
37
|
guard-test (2.0.8)
|
|
40
38
|
guard-compat (~> 1.2)
|
|
41
39
|
test-unit (~> 3.0)
|
|
42
|
-
i18n (1.
|
|
40
|
+
i18n (1.8.10)
|
|
43
41
|
concurrent-ruby (~> 1.0)
|
|
44
|
-
|
|
42
|
+
jaro_winkler (1.5.4)
|
|
43
|
+
json (2.3.1)
|
|
45
44
|
listen (3.1.5)
|
|
46
45
|
rb-fsevent (~> 0.9, >= 0.9.4)
|
|
47
46
|
rb-inotify (~> 0.9, >= 0.9.7)
|
|
48
47
|
ruby_dep (~> 1.2)
|
|
49
48
|
lumberjack (1.0.13)
|
|
50
|
-
method_source (0.9.
|
|
51
|
-
mime-types (
|
|
52
|
-
|
|
49
|
+
method_source (0.9.2)
|
|
50
|
+
mime-types (3.3.1)
|
|
51
|
+
mime-types-data (~> 3.2015)
|
|
52
|
+
mime-types-data (3.2021.0225)
|
|
53
|
+
mini_portile2 (2.5.3)
|
|
53
54
|
nenv (0.3.0)
|
|
54
|
-
nokogiri (1.
|
|
55
|
-
mini_portile2 (~> 2.
|
|
55
|
+
nokogiri (1.11.7)
|
|
56
|
+
mini_portile2 (~> 2.5.0)
|
|
57
|
+
racc (~> 1.4)
|
|
56
58
|
nokogiri-diff (0.2.0)
|
|
57
59
|
nokogiri (~> 1.5)
|
|
58
60
|
tdiff (~> 0.3, >= 0.3.2)
|
|
59
|
-
notiffany (0.1.
|
|
61
|
+
notiffany (0.1.3)
|
|
60
62
|
nenv (~> 0.1)
|
|
61
63
|
shellany (~> 0.0)
|
|
62
|
-
parallel (1.
|
|
63
|
-
parser (
|
|
64
|
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ast (~> 2.4.
|
|
65
|
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power_assert (1.1.
|
|
66
|
-
|
|
67
|
-
pry (0.11.3)
|
|
64
|
+
parallel (1.20.1)
|
|
65
|
+
parser (3.0.0.0)
|
|
66
|
+
ast (~> 2.4.1)
|
|
67
|
+
power_assert (1.1.5)
|
|
68
|
+
pry (0.12.2)
|
|
68
69
|
coderay (~> 1.1.0)
|
|
69
70
|
method_source (~> 0.9.0)
|
|
70
|
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|
|
71
|
-
|
|
72
|
-
rake (12.3.
|
|
71
|
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racc (1.5.2)
|
|
72
|
+
rainbow (3.0.0)
|
|
73
|
+
rake (12.3.3)
|
|
73
74
|
rb-fsevent (0.10.3)
|
|
74
|
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rb-inotify (0.
|
|
75
|
-
ffi (
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
rspec-
|
|
79
|
-
rspec-
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
|
|
75
|
+
rb-inotify (0.10.0)
|
|
76
|
+
ffi (~> 1.0)
|
|
77
|
+
rexml (3.2.5)
|
|
78
|
+
rspec (3.8.0)
|
|
79
|
+
rspec-core (~> 3.8.0)
|
|
80
|
+
rspec-expectations (~> 3.8.0)
|
|
81
|
+
rspec-mocks (~> 3.8.0)
|
|
82
|
+
rspec-core (3.8.2)
|
|
83
|
+
rspec-support (~> 3.8.0)
|
|
84
|
+
rspec-expectations (3.8.4)
|
|
83
85
|
diff-lcs (>= 1.2.0, < 2.0)
|
|
84
|
-
rspec-support (~> 3.
|
|
85
|
-
rspec-mocks (3.
|
|
86
|
+
rspec-support (~> 3.8.0)
|
|
87
|
+
rspec-mocks (3.8.1)
|
|
86
88
|
diff-lcs (>= 1.2.0, < 2.0)
|
|
87
|
-
rspec-support (~> 3.
|
|
88
|
-
rspec-support (3.
|
|
89
|
-
rubocop (0.
|
|
89
|
+
rspec-support (~> 3.8.0)
|
|
90
|
+
rspec-support (3.8.2)
|
|
91
|
+
rubocop (0.80.0)
|
|
92
|
+
jaro_winkler (~> 1.5.1)
|
|
90
93
|
parallel (~> 1.10)
|
|
91
|
-
parser (>= 2.
|
|
92
|
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|
|
93
|
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|
|
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|
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parser (>= 2.7.0.1)
|
|
95
|
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rainbow (>= 2.2.2, < 4.0)
|
|
96
|
+
rexml
|
|
94
97
|
ruby-progressbar (~> 1.7)
|
|
95
|
-
unicode-display_width (
|
|
96
|
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ruby-progressbar (1.
|
|
98
|
+
unicode-display_width (>= 1.4.0, < 1.7)
|
|
99
|
+
ruby-progressbar (1.11.0)
|
|
97
100
|
ruby_dep (1.5.0)
|
|
98
101
|
shellany (0.0.1)
|
|
99
102
|
simplecov (0.13.0)
|
|
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|
|
|
101
104
|
json (>= 1.8, < 3)
|
|
102
105
|
simplecov-html (~> 0.10.0)
|
|
103
106
|
simplecov-html (0.10.2)
|
|
104
|
-
tdiff (0.3.
|
|
105
|
-
test-unit (3.
|
|
107
|
+
tdiff (0.3.4)
|
|
108
|
+
test-unit (3.3.3)
|
|
106
109
|
power_assert
|
|
107
|
-
thor (0.20.
|
|
108
|
-
unicode-display_width (1.
|
|
110
|
+
thor (0.20.3)
|
|
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|
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unicode-display_width (1.6.1)
|
|
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|
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|
PLATFORMS
|
|
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|
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|
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|
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116
|
DEPENDENCIES
|
|
114
117
|
bundler
|
|
115
|
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codeclimate-test-reporter
|
|
116
118
|
fhir_dstu2_models!
|
|
117
119
|
guard-rspec
|
|
118
120
|
guard-test
|
|
@@ -120,12 +122,12 @@ DEPENDENCIES
|
|
|
120
122
|
pry
|
|
121
123
|
rake
|
|
122
124
|
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|
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|
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|
|
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|
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rubocop (= 0.80)
|
|
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126
|
simplecov
|
|
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127
|
test-unit
|
|
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128
|
|
|
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|
RUBY VERSION
|
|
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|
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ruby 2.
|
|
130
|
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ruby 2.7.2p137
|
|
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131
|
|
|
130
132
|
BUNDLED WITH
|
|
131
|
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|
|
133
|
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2.2.17
|
data/LICENSE
ADDED
|
@@ -0,0 +1,201 @@
|
|
|
1
|
+
Apache License
|
|
2
|
+
Version 2.0, January 2004
|
|
3
|
+
http://www.apache.org/licenses/
|
|
4
|
+
|
|
5
|
+
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
|
6
|
+
|
|
7
|
+
1. Definitions.
|
|
8
|
+
|
|
9
|
+
"License" shall mean the terms and conditions for use, reproduction,
|
|
10
|
+
and distribution as defined by Sections 1 through 9 of this document.
|
|
11
|
+
|
|
12
|
+
"Licensor" shall mean the copyright owner or entity authorized by
|
|
13
|
+
the copyright owner that is granting the License.
|
|
14
|
+
|
|
15
|
+
"Legal Entity" shall mean the union of the acting entity and all
|
|
16
|
+
other entities that control, are controlled by, or are under common
|
|
17
|
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control with that entity. For the purposes of this definition,
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data/README.md
CHANGED
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@@ -51,6 +51,16 @@ obs.valueQuantity = FHIR::DSTU2::Quantity.new(
|
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|
)
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|
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```
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|
53
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54
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Iterating over all elements in a resource, including nested elements...
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+
```ruby
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|
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patient.each_element do |value, metadata, path|
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puts "Info for #{path}:"
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puts "- value: #{value}"
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puts "- type: #{metadata['type']}"
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|
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puts "- cardinality: #{metadata['min']}..#{metadata['max']}"
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end
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|
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```
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### Validation
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Using built in validation...
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```
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|
# License
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Copyright 2014-
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Copyright 2014-2021 The MITRE Corporation
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Licensed under the Apache License, Version 2.0 (the "License");
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|
you may not use this file except in compliance with the License.
|
data/fhir_dstu2_models.gemspec
CHANGED
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@@ -8,6 +8,7 @@ Gem::Specification.new do |spec|
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8
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|
spec.version = FHIR::DSTU2::Models::VERSION
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spec.authors = ['Jason Walonoski', 'Andre Quina', "Michael O'Keefe", 'Robert Scanlon']
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|
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spec.summary = %q{A Gem for handling FHIR DSTU2 models in ruby}
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spec.description = %q{A Gem for handling FHIR DSTU2 models in ruby}
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@@ -20,10 +21,10 @@ Gem::Specification.new do |spec|
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20
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spec.executables = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
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|
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22
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|
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|
-
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|
|
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|
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|
24
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|
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|
|
25
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|
spec.add_dependency 'bcp47', '>= 0.3'
|
|
26
|
-
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|
|
27
|
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|
|
27
28
|
|
|
28
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|
spec.add_development_dependency 'bundler'
|
|
29
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|
spec.add_development_dependency 'rake'
|
|
@@ -32,8 +33,7 @@ Gem::Specification.new do |spec|
|
|
|
32
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|
spec.add_development_dependency 'rspec'
|
|
33
34
|
spec.add_development_dependency 'simplecov'
|
|
34
35
|
spec.add_development_dependency 'nokogiri-diff'
|
|
35
|
-
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|
|
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|
-
spec.add_development_dependency 'codeclimate-test-reporter'
|
|
36
|
+
spec.add_development_dependency 'rubocop', '0.80'
|
|
37
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|
spec.add_development_dependency 'guard-rspec'
|
|
38
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|
spec.add_development_dependency 'guard-test'
|
|
39
39
|
end
|
|
@@ -183,7 +183,7 @@ module FHIR
|
|
|
183
183
|
field.path = element['path'].gsub(path_type, type_name)
|
|
184
184
|
field.type = data_type
|
|
185
185
|
field.type = 'Extension' if field.path.end_with?('extension')
|
|
186
|
-
field.type_profiles = profiles if %w[Reference Extension].include?(
|
|
186
|
+
field.type_profiles = profiles if %w[Reference Extension].include?(data_type)
|
|
187
187
|
field.min = element['min']
|
|
188
188
|
field.max = element['max']
|
|
189
189
|
field.max = field.max.to_i
|
|
@@ -302,6 +302,27 @@ module FHIR
|
|
|
302
302
|
valid
|
|
303
303
|
end
|
|
304
304
|
|
|
305
|
+
def each_element(path = nil, &block)
|
|
306
|
+
self.class::METADATA.each do |element_name, metadata|
|
|
307
|
+
local_name = metadata.fetch :local_name, element_name
|
|
308
|
+
values = [instance_variable_get("@#{local_name}")].flatten.compact
|
|
309
|
+
next if values.empty?
|
|
310
|
+
|
|
311
|
+
values.each_with_index do |value, i|
|
|
312
|
+
child_path =
|
|
313
|
+
if path.nil?
|
|
314
|
+
element_name
|
|
315
|
+
else
|
|
316
|
+
"#{path}.#{element_name}"
|
|
317
|
+
end
|
|
318
|
+
child_path += "[#{i}]" if metadata['max'] > 1
|
|
319
|
+
yield value, metadata, child_path
|
|
320
|
+
value.each_element child_path, &block unless FHIR::DSTU2::PRIMITIVES.include? metadata['type']
|
|
321
|
+
end
|
|
322
|
+
end
|
|
323
|
+
self
|
|
324
|
+
end
|
|
325
|
+
|
|
305
326
|
private :validate_reference_type, :check_binding_uri, :validate_field
|
|
306
327
|
end
|
|
307
328
|
end
|
|
@@ -168,7 +168,6 @@ module FHIR
|
|
|
168
168
|
# Check the datatype for each node, only if the element has one declared, and it isn't the root element
|
|
169
169
|
if !element.type.empty? && element.path != id
|
|
170
170
|
codeable_concept_pattern = element.pattern && element.pattern.is_a?(FHIR::DSTU2::CodeableConcept)
|
|
171
|
-
codeable_concept_binding = element.binding
|
|
172
171
|
matching_pattern = false
|
|
173
172
|
nodes.each do |value|
|
|
174
173
|
matching_type = 0
|
|
@@ -205,35 +204,45 @@ module FHIR
|
|
|
205
204
|
matching_pattern = true if vcoding.system == pcoding.system && vcoding.code == pcoding.code
|
|
206
205
|
end
|
|
207
206
|
end
|
|
208
|
-
elsif
|
|
209
|
-
|
|
210
|
-
|
|
211
|
-
|
|
212
|
-
|
|
213
|
-
|
|
214
|
-
|
|
215
|
-
|
|
207
|
+
elsif %w[CodeableConcept Coding Quantity].include? data_type_found
|
|
208
|
+
required_strength = element&.binding&.strength == 'required'
|
|
209
|
+
binding_issues = required_strength ? @errors : @warnings
|
|
210
|
+
|
|
211
|
+
valueset_uri = element&.binding&.valueSetReference&.reference
|
|
212
|
+
check_code = ->coding do
|
|
213
|
+
# Can't validate if both code and system are not given
|
|
214
|
+
if coding['code'].nil? || coding['system'].nil?
|
|
215
|
+
binding_issues << "#{describe_element(element)} code: #{coding.to_json} missing code" if coding['code'].nil?
|
|
216
|
+
binding_issues << "#{describe_element(element)} code: #{coding.to_json} missing system" if coding['system'].nil?
|
|
217
|
+
return
|
|
216
218
|
end
|
|
217
219
|
|
|
218
|
-
|
|
219
|
-
vcc = FHIR::DSTU2::CodeableConcept.new(value)
|
|
220
|
-
if valueset_uri && self.class.vs_validators[valueset_uri]
|
|
220
|
+
# ValueSet Validation
|
|
221
221
|
check_fn = self.class.vs_validators[valueset_uri]
|
|
222
|
-
has_valid_code =
|
|
222
|
+
has_valid_code = false
|
|
223
|
+
if check_fn
|
|
224
|
+
has_valid_code = check_fn.call(coding)
|
|
225
|
+
binding_issues << "#{describe_element(element)} has no codings from #{valueset_uri}. Codings evaluated: #{coding.to_json}" unless has_valid_code
|
|
226
|
+
end
|
|
223
227
|
|
|
228
|
+
# CodeSystem Validation
|
|
224
229
|
unless has_valid_code
|
|
225
|
-
|
|
230
|
+
check_fn = self.class.vs_validators[coding['system']]
|
|
231
|
+
if check_fn && !check_fn.call(coding)
|
|
232
|
+
binding_issues << "#{describe_element(element)} has no codings from it's specified system: #{coding['system']}. "\
|
|
233
|
+
"Codings evaluated: #{coding.to_json}"
|
|
234
|
+
end
|
|
226
235
|
end
|
|
227
236
|
end
|
|
228
237
|
|
|
229
|
-
|
|
230
|
-
|
|
231
|
-
|
|
232
|
-
if check_fn && !check_fn.call(c)
|
|
233
|
-
binding_issues << "#{describe_element(element)} has no codings from it's specified system: #{c.system}. "\
|
|
234
|
-
"Codings evaluated: #{vcc.to_json}"
|
|
235
|
-
end
|
|
238
|
+
if data_type_found == 'CodeableConcept'
|
|
239
|
+
value['coding']&.each do |coding|
|
|
240
|
+
check_code.(coding)
|
|
236
241
|
end
|
|
242
|
+
else
|
|
243
|
+
# avoid checking Codings twice if they are already checked as part of a CodeableConcept
|
|
244
|
+
# The CodeableConcept should contain the binding for the children Codings
|
|
245
|
+
check_code.(value) unless element.path == 'CodeableConcept.coding'
|
|
237
246
|
end
|
|
238
247
|
|
|
239
248
|
elsif data_type_found == 'String' && !element.maxLength.nil? && (value.size > element.maxLength)
|
|
@@ -284,13 +293,9 @@ module FHIR
|
|
|
284
293
|
unless definition.nil?
|
|
285
294
|
ret_val = false
|
|
286
295
|
begin
|
|
287
|
-
# klass = Module.const_get("FHIR::DSTU2::#{data_type_code}")
|
|
288
|
-
# ret_val = definition.validates_resource?(klass.new(deep_copy(value)))
|
|
289
296
|
ret_val = definition.validates_hash?(value)
|
|
290
|
-
|
|
291
|
-
|
|
292
|
-
@warnings += definition.warnings
|
|
293
|
-
end
|
|
297
|
+
@errors += definition.errors
|
|
298
|
+
@warnings += definition.warnings
|
|
294
299
|
rescue
|
|
295
300
|
@errors << "Unable to verify #{data_type_code} as a FHIR::DSTU2 Resource."
|
|
296
301
|
end
|
|
@@ -308,13 +313,9 @@ module FHIR
|
|
|
308
313
|
if !definition.nil?
|
|
309
314
|
ret_val = false
|
|
310
315
|
begin
|
|
311
|
-
# klass = Module.const_get("FHIR::DSTU2::#{resource_type}")
|
|
312
|
-
# ret_val = definition.validates_resource?(klass.new(deep_copy(value)))
|
|
313
316
|
ret_val = definition.validates_hash?(value)
|
|
314
|
-
|
|
315
|
-
|
|
316
|
-
@warnings += definition.warnings
|
|
317
|
-
end
|
|
317
|
+
@errors += definition.errors
|
|
318
|
+
@warnings += definition.warnings
|
|
318
319
|
rescue
|
|
319
320
|
@errors << "Unable to verify #{resource_type} as a FHIR::DSTU2 Resource."
|
|
320
321
|
end
|
|
@@ -334,13 +335,9 @@ module FHIR
|
|
|
334
335
|
if !definition.nil?
|
|
335
336
|
ret_val = false
|
|
336
337
|
begin
|
|
337
|
-
# klass = Module.const_get("FHIR::DSTU2::#{data_type_code}")
|
|
338
|
-
# ret_val = definition.validates_resource?(klass.new(deep_copy(value)))
|
|
339
338
|
ret_val = definition.validates_hash?(value)
|
|
340
|
-
|
|
341
|
-
|
|
342
|
-
@warnings += definition.warnings
|
|
343
|
-
end
|
|
339
|
+
@errors += definition.errors
|
|
340
|
+
@warnings += definition.warnings
|
|
344
341
|
rescue
|
|
345
342
|
@errors << "Unable to verify #{data_type_code} as a FHIR::DSTU2 type."
|
|
346
343
|
end
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: fhir_dstu2_models
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.0
|
|
4
|
+
version: 1.1.0
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Jason Walonoski
|
|
@@ -11,7 +11,7 @@ authors:
|
|
|
11
11
|
autorequire:
|
|
12
12
|
bindir: exe
|
|
13
13
|
cert_chain: []
|
|
14
|
-
date:
|
|
14
|
+
date: 2021-06-24 00:00:00.000000000 Z
|
|
15
15
|
dependencies:
|
|
16
16
|
- !ruby/object:Gem::Dependency
|
|
17
17
|
name: nokogiri
|
|
@@ -19,14 +19,14 @@ dependencies:
|
|
|
19
19
|
requirements:
|
|
20
20
|
- - ">="
|
|
21
21
|
- !ruby/object:Gem::Version
|
|
22
|
-
version: 1.
|
|
22
|
+
version: 1.11.4
|
|
23
23
|
type: :runtime
|
|
24
24
|
prerelease: false
|
|
25
25
|
version_requirements: !ruby/object:Gem::Requirement
|
|
26
26
|
requirements:
|
|
27
27
|
- - ">="
|
|
28
28
|
- !ruby/object:Gem::Version
|
|
29
|
-
version: 1.
|
|
29
|
+
version: 1.11.4
|
|
30
30
|
- !ruby/object:Gem::Dependency
|
|
31
31
|
name: date_time_precision
|
|
32
32
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -61,20 +61,14 @@ dependencies:
|
|
|
61
61
|
requirements:
|
|
62
62
|
- - ">="
|
|
63
63
|
- !ruby/object:Gem::Version
|
|
64
|
-
version: '
|
|
65
|
-
- - "<"
|
|
66
|
-
- !ruby/object:Gem::Version
|
|
67
|
-
version: '3'
|
|
64
|
+
version: '3.0'
|
|
68
65
|
type: :runtime
|
|
69
66
|
prerelease: false
|
|
70
67
|
version_requirements: !ruby/object:Gem::Requirement
|
|
71
68
|
requirements:
|
|
72
69
|
- - ">="
|
|
73
70
|
- !ruby/object:Gem::Version
|
|
74
|
-
version: '
|
|
75
|
-
- - "<"
|
|
76
|
-
- !ruby/object:Gem::Version
|
|
77
|
-
version: '3'
|
|
71
|
+
version: '3.0'
|
|
78
72
|
- !ruby/object:Gem::Dependency
|
|
79
73
|
name: bundler
|
|
80
74
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -179,28 +173,14 @@ dependencies:
|
|
|
179
173
|
requirements:
|
|
180
174
|
- - '='
|
|
181
175
|
- !ruby/object:Gem::Version
|
|
182
|
-
version: '0.
|
|
176
|
+
version: '0.80'
|
|
183
177
|
type: :development
|
|
184
178
|
prerelease: false
|
|
185
179
|
version_requirements: !ruby/object:Gem::Requirement
|
|
186
180
|
requirements:
|
|
187
181
|
- - '='
|
|
188
182
|
- !ruby/object:Gem::Version
|
|
189
|
-
version: '0.
|
|
190
|
-
- !ruby/object:Gem::Dependency
|
|
191
|
-
name: codeclimate-test-reporter
|
|
192
|
-
requirement: !ruby/object:Gem::Requirement
|
|
193
|
-
requirements:
|
|
194
|
-
- - ">="
|
|
195
|
-
- !ruby/object:Gem::Version
|
|
196
|
-
version: '0'
|
|
197
|
-
type: :development
|
|
198
|
-
prerelease: false
|
|
199
|
-
version_requirements: !ruby/object:Gem::Requirement
|
|
200
|
-
requirements:
|
|
201
|
-
- - ">="
|
|
202
|
-
- !ruby/object:Gem::Version
|
|
203
|
-
version: '0'
|
|
183
|
+
version: '0.80'
|
|
204
184
|
- !ruby/object:Gem::Dependency
|
|
205
185
|
name: guard-rspec
|
|
206
186
|
requirement: !ruby/object:Gem::Requirement
|
|
@@ -237,15 +217,16 @@ extensions: []
|
|
|
237
217
|
extra_rdoc_files: []
|
|
238
218
|
files:
|
|
239
219
|
- ".codeclimate.yml"
|
|
220
|
+
- ".github/workflows/ruby.yml"
|
|
240
221
|
- ".gitignore"
|
|
241
222
|
- ".rspec"
|
|
242
223
|
- ".rubocop.yml"
|
|
243
224
|
- ".rubocop_todo.yml"
|
|
244
225
|
- ".simplecov"
|
|
245
|
-
- ".travis.yml"
|
|
246
226
|
- Gemfile
|
|
247
227
|
- Gemfile.lock
|
|
248
228
|
- Guardfile
|
|
229
|
+
- LICENSE
|
|
249
230
|
- README.md
|
|
250
231
|
- Rakefile
|
|
251
232
|
- bin/console
|
|
@@ -2125,7 +2106,8 @@ files:
|
|
|
2125
2106
|
- lib/fhir_dstu2_models/tasks/tasks.rake
|
|
2126
2107
|
- lib/fhir_dstu2_models/version.rb
|
|
2127
2108
|
homepage: https://github.com/fhir-crucible/fhir_dstu2_models
|
|
2128
|
-
licenses:
|
|
2109
|
+
licenses:
|
|
2110
|
+
- Apache-2.0
|
|
2129
2111
|
metadata: {}
|
|
2130
2112
|
post_install_message:
|
|
2131
2113
|
rdoc_options: []
|
|
@@ -2142,8 +2124,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
2142
2124
|
- !ruby/object:Gem::Version
|
|
2143
2125
|
version: '0'
|
|
2144
2126
|
requirements: []
|
|
2145
|
-
|
|
2146
|
-
rubygems_version: 2.7.7
|
|
2127
|
+
rubygems_version: 3.0.3
|
|
2147
2128
|
signing_key:
|
|
2148
2129
|
specification_version: 4
|
|
2149
2130
|
summary: A Gem for handling FHIR DSTU2 models in ruby
|
data/.travis.yml
DELETED
|
@@ -1,21 +0,0 @@
|
|
|
1
|
-
language: ruby
|
|
2
|
-
env:
|
|
3
|
-
- TESTMEMORY=0 GCDELAY=2.0
|
|
4
|
-
rvm:
|
|
5
|
-
- 2.3
|
|
6
|
-
- 2.4
|
|
7
|
-
- 2.5
|
|
8
|
-
- 2.6
|
|
9
|
-
script:
|
|
10
|
-
- bundle exec rake
|
|
11
|
-
- bundle exec codeclimate-test-reporter
|
|
12
|
-
notifications:
|
|
13
|
-
email:
|
|
14
|
-
recipients:
|
|
15
|
-
- fhir-testing-list@lists.mitre.org
|
|
16
|
-
on_failure: change
|
|
17
|
-
addons:
|
|
18
|
-
code_climate:
|
|
19
|
-
repo_token: 0230b3379581b30743b7b4355d7394e427648e604d19a2aba987956201eee290
|
|
20
|
-
before_install:
|
|
21
|
-
- gem install bundler
|