fhir_client 5.0.3 → 6.1.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/.github/workflows/ruby.yml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        ruby-version: ['2.6', '2.7']
+        ruby-version: ['3.0', '3.1', '3.2']
 
     steps:
     - uses: actions/checkout@v2

data/.rubocop.yml

@@ -1,7 +1,7 @@
 inherit_from: .rubocop_todo.yml
 
 AllCops:
-  TargetRubyVersion: 2.4
+  TargetRubyVersion: 3.0
   Exclude:
     - '*.gemspec'
     - 'Gemfile*'
@@ -10,9 +10,6 @@ AllCops:
     - 'lib/tasks/*'
     - 'vendor/**/*'
 
-Documentation:
-  Enabled: false
-
 Metrics:
   Enabled: false
 
@@ -22,8 +19,5 @@ Style:
 Layout:
   Enabled: false
 
-Performance/Casecmp:
-  Enabled: false
-
 Naming:
   Enabled: false

data/.rubocop_todo.yml

@@ -1,19 +1,7 @@
 # This configuration was generated by
 # `rubocop --auto-gen-config`
-# on 2019-03-22 01:56:17 -0400 using RuboCop version 0.52.1.
+# on 2024-10-14 14:56:48 UTC using RuboCop version 1.23.0.
 # The point is for the user to remove these configuration records
 # one by one as the offenses are removed from the code base.
 # Note that changes in the inspected code, or installation of new
 # versions of RuboCop, may require this file to be generated again.
-
-# Offense count: 4
-# Cop supports --auto-correct.
-Performance/RegexpMatch:
-  Exclude:
-    - 'lib/fhir_client/model/client_reply.rb'
-
-# Offense count: 197
-# Configuration parameters: AllowHeredoc, AllowURI, URISchemes, IgnoreCopDirectives, IgnoredPatterns.
-# URISchemes: http, https
-Metrics/LineLength:
-  Max: 210

data/Gemfile

@@ -3,6 +3,6 @@ source 'https://rubygems.org'
 gemspec
 
 group :test do
-  gem 'rubocop', '~> 0.52.1', require: false
+  gem 'rubocop', '~> 1.23.0', require: false
   gem 'awesome_print', require: 'ap'
 end

data/README.md

@@ -3,7 +3,7 @@
 Ruby FHIR client.
 
 Supports:
-* FHIR R4, STU3 and DSTU2
+* FHIR R5, R4B, R4, STU3 and DSTU2
 * JSON and XML
 * All CRUD, including version read and history
 * Transactions and Batches
@@ -59,7 +59,7 @@ patient.destroy
 ## Advanced Usage
 
 ### Changing FHIR Versions
-The client defaults to `R4` but can be switched to `DSTU2` or `STU3`. It can also attempt to autodetect the FHIR version based on the `metadata` endpoint.
+The client defaults to `R4` but can be switched to other versions. It can also attempt to autodetect the FHIR version based on the `metadata` endpoint.
 
 ```ruby
 # autodetect the FHIR version
@@ -71,6 +71,10 @@ elsif version == :dstu2
   puts 'FHIR Client using DSTU2'
 elsif version == :r4
   puts 'FHIR Client using R4'
+elsif version == :r4b
+  puts 'FHIR Client using R4B'
+elsif
+  puts 'FHIR Client using R5'
 end
 
 # tell the client to use R4
@@ -79,7 +83,7 @@ client.use_r4
 patient = FHIR::Patient.read('example')
 patient = client.read(FHIR::Patient, 'example').resource
 
-# tell the client to use STU3 (default)
+# tell the client to use STU3
 client.use_stu3
 # now use the client normally
 patient = FHIR::STU3::Patient.read('example')

data/fhir_client.gemspec

@@ -21,13 +21,14 @@ Gem::Specification.new do |spec|
   spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
   spec.require_paths = ['lib']
 
+  spec.required_ruby_version = '>= 3.0.0'
   spec.add_dependency 'activesupport', '>= 3'
   spec.add_dependency 'addressable', '>= 2.3'
-  spec.add_dependency 'fhir_models', '>= 4.2.1'
+  spec.add_dependency 'fhir_models', '>= 5.0.0'
   spec.add_dependency 'fhir_stu3_models', '>= 3.1.1'
   spec.add_dependency 'fhir_dstu2_models', '>= 1.1.1'
   spec.add_dependency 'nokogiri', '>= 1.10.4'
-  spec.add_dependency 'oauth2', '~> 1.1'
+  spec.add_dependency 'oauth2', '~> 2.0'
   spec.add_dependency 'rack', '>= 1.5'
   spec.add_dependency 'rest-client', '~> 2.0'
   spec.add_dependency 'tilt', '>= 1.1'

data/lib/fhir_client/client.rb

@@ -77,6 +77,16 @@ module FHIR
       @default_format = versioned_format_class
     end
 
+    def use_r4b
+      @fhir_version = :r4b
+      @default_format = versioned_format_class
+    end
+
+    def use_r5
+      @fhir_version = :r5
+      @default_format = versioned_format_class
+    end
+
     #
     # Instructs the client to specify the minimal Prefer Header where applicable
     def use_minimal_preference
@@ -95,6 +105,10 @@ module FHIR
       cap = capability_statement
       if cap.is_a?(FHIR::CapabilityStatement)
         use_r4
+      elsif cap.is_a?(FHIR::R4B::CapabilityStatement)
+        use_r4b
+      elsif cap.is_a?(FHIR::R5::CapabilityStatement)
+        use_r5
       elsif cap.is_a?(FHIR::STU3::CapabilityStatement)
         use_stu3
       elsif cap.is_a?(FHIR::DSTU2::Conformance)
@@ -158,10 +172,11 @@ module FHIR
         site: site || @base_service_url,
         authorize_url: authorize_path,
         token_url: token_path,
-        raise_errors: true
+        raise_errors: true,
+        auth_scheme: :request_body
       }
+      options[:connection_opts] = { proxy: proxy } unless proxy.nil?
       client = OAuth2::Client.new(client, secret, options)
-      client.connection.proxy(proxy) unless proxy.nil?
       @client = client.client_credentials.get_token
     end
 
@@ -275,20 +290,36 @@ module FHIR
         rescue
           @cached_capability_statement = nil
         end
-        if @cached_capability_statement.nil? || !@cached_capability_statement.fhirVersion.starts_with?('4')
-          use_stu3
+        if @cached_capability_statement.nil? || !@cached_capability_statement.fhirVersion.starts_with?('4.0')
+          use_r4b
           begin
-            @cached_capability_statement = parse_reply(FHIR::STU3::CapabilityStatement, frmt, reply)
+            @cached_capability_statement = parse_reply(FHIR::R4B::CapabilityStatement, frmt, reply)
           rescue
             @cached_capability_statement = nil
           end
-          unless @cached_capability_statement
-            use_dstu2
+          if @cached_capability_statement.nil? || !@cached_capability_statement.fhirVersion.starts_with?('4')
+            use_r5
             begin
-              @cached_capability_statement = parse_reply(FHIR::DSTU2::Conformance, frmt, reply)
+              @cached_capability_statement = parse_reply(FHIR::R5::CapabilityStatement, frmt, reply)
             rescue
               @cached_capability_statement = nil
             end
+            if @cached_capability_statement.nil? || !@cached_capability_statement.fhirVersion.starts_with?('5')
+              use_stu3
+              begin
+                @cached_capability_statement = parse_reply(FHIR::STU3::CapabilityStatement, frmt, reply)
+              rescue
+                @cached_capability_statement = nil
+              end
+              unless @cached_capability_statement
+                use_dstu2
+                begin
+                  @cached_capability_statement = parse_reply(FHIR::DSTU2::Conformance, frmt, reply)
+                rescue
+                  @cached_capability_statement = nil
+                end
+              end
+            end
           end
         end
         if @cached_capability_statement
@@ -317,23 +348,35 @@ module FHIR
       return nil unless [200, 201].include? response.code
       res =
         begin
-          if(@fhir_version == :dstu2 || klass&.ancestors&.include?(FHIR::DSTU2::Model))
+          if(@fhir_version == :dstu2 || klass < FHIR::DSTU2::Model)
             if(format.include?('xml'))
               FHIR::DSTU2::Xml.from_xml(response.body)
             else
               FHIR::DSTU2::Json.from_json(response.body)
             end
-          elsif(@fhir_version == :r4 || klass&.ancestors&.include?(FHIR::Model))
+          elsif(@fhir_version == :stu3 || klass < FHIR::STU3::Model)
             if(format.include?('xml'))
-              FHIR::Xml.from_xml(response.body)
+              FHIR::STU3::Xml.from_xml(response.body)
             else
-              FHIR::Json.from_json(response.body)
+              FHIR::STU3::Json.from_json(response.body)
+            end
+          elsif(@fhir_version == :r4b || klass < FHIR::R4B::Model)
+            if(format.include?('xml'))
+              FHIR::R4B::Xml.from_xml(response.body)
+            else
+              FHIR::R4B::Json.from_json(response.body)
+            end
+          elsif(@fhir_version == :r5 || klass < FHIR::R5::Model)
+            if(format.include?('xml'))
+              FHIR::R5::Xml.from_xml(response.body)
+            else
+              FHIR::R5::Json.from_json(response.body)
             end
           else
             if(format.include?('xml'))
-              FHIR::STU3::Xml.from_xml(response.body)
+              FHIR::Xml.from_xml(response.body)
             else
-              FHIR::STU3::Json.from_json(response.body)
+              FHIR::Json.from_json(response.body)
             end
           end
         rescue => e
@@ -349,7 +392,7 @@ module FHIR
 
       resource.client = self
       resource.each_element do |element, _, _|
-        if element.is_a?(Reference) || element.is_a?(STU3::Reference) || element.is_a?(DSTU2::Reference) || element.respond_to?(:resourceType)
+        if element.is_a?(Reference) || element.is_a?(FHIR::R4B::Reference) || element.is_a?(FHIR::R5::Reference) || element.is_a?(STU3::Reference) || element.is_a?(DSTU2::Reference) || element.respond_to?(:resourceType)
           element.client = self
         end
       end

data/lib/fhir_client/ext/bundle.rb

@@ -67,4 +67,20 @@ module FHIR
       include FHIR::BundleExtras
     end
   end
+end
+
+module FHIR
+  module R4B
+    class Bundle < FHIR::R4B::Model
+      include FHIR::BundleExtras
+    end
+  end
+end
+
+module FHIR
+  module R5
+    class Bundle < FHIR::R5::Model
+      include FHIR::BundleExtras
+    end
+  end
 end

data/lib/fhir_client/ext/model.rb

@@ -144,3 +144,19 @@ module FHIR
     end
   end
 end
+
+module FHIR
+  module R4B
+    class Model < FHIR::Model
+      include FHIR::ModelExtras
+    end
+  end
+end
+
+module FHIR
+  module R5
+    class Model < FHIR::Model
+      include FHIR::ModelExtras
+    end
+  end
+end

data/lib/fhir_client/ext/reference.rb

@@ -82,7 +82,7 @@ module FHIR
     include FHIR::ReferenceExtras
 
     def resource_class
-      "FHIR::#{resource_type}".constantize unless contained?
+      FHIR.const_get(resource_type) unless contained?
     end
   end
 end
@@ -93,7 +93,7 @@ module FHIR
       include FHIR::ReferenceExtras
 
       def resource_class
-        "FHIR::DSTU2::#{resource_type}".constantize unless contained?
+        FHIR::DSTU2.const_get(resource_type) unless contained?
       end
     end
   end
@@ -101,12 +101,36 @@ end
 
 module FHIR
   module STU3
-    class Reference
+    class Reference 
+      include FHIR::ReferenceExtras
+
+      def resource_class
+        FHIR::STU3.const_get(resource_type) unless contained?
+      end
+    end
+  end
+end
+
+module FHIR
+  module R4B
+    class Reference < FHIR::R4B::Model
       include FHIR::ReferenceExtras
 
       def resource_class
-        "FHIR::STU3::#{resource_type}".constantize unless contained?
+        FHIR::R4B.const_get(resource_type) unless contained?
       end
     end
   end
 end
+
+module FHIR
+  module R5
+    class Reference < FHIR::R5::Model
+      include FHIR::ReferenceExtras
+
+      def resource_class
+        FHIR::R5.const_get(resource_type) unless contained?
+      end
+    end
+  end
+end

data/lib/fhir_client/fhir_api_validation.json

@@ -344,7 +344,7 @@
         "Accept": "optional",
         "Prefer": false
       },
-      "body": { "regex": "([\w\-]+(=[\w\-.:\/\|]*)?(&[\w\-]+(=[\w\-.:\/\|]*)?)*)?" }
+      "body": { "regex": "([\\w\\-]+(=[\\w\\-.:\\/\\|]*)?(&[\\w\\-]+(=[\\w\\-.:\\/\\|]*)?)*)?" }
     },
     "response": {
       "status": [200],

data/lib/fhir_client/version.rb

@@ -1,5 +1,5 @@
 module FHIR
   class Client
-    VERSION = '5.0.3'.freeze
+    VERSION = '6.1.0'.freeze
   end
 end

data/lib/fhir_client/version_management.rb

@@ -7,6 +7,10 @@ module FHIR
               FHIR::STU3
             when :dstu2
               FHIR::DSTU2
+            when :r4b
+              FHIR::R4B
+            when :r5
+              FHIR::R5
             else
               FHIR
             end

data/lib/fhir_client.rb

@@ -1,4 +1,6 @@
 require 'fhir_models'
+require 'fhir_models/r4b'
+require 'fhir_models/r5'
 require 'fhir_dstu2_models'
 require 'fhir_stu3_models'
 require 'active_support/all'

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: fhir_client
 version: !ruby/object:Gem::Version
-  version: 5.0.3
+  version: 6.1.0
 platform: ruby
 authors:
 - Andre Quina
@@ -11,7 +11,7 @@ authors:
 autorequire:
 bindir: exe
 cert_chain: []
-date: 2021-12-09 00:00:00.000000000 Z
+date: 2026-03-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activesupport
@@ -47,14 +47,14 @@ dependencies:
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: 4.2.1
+        version: 5.0.0
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ">="
       - !ruby/object:Gem::Version
-        version: 4.2.1
+        version: 5.0.0
 - !ruby/object:Gem::Dependency
   name: fhir_stu3_models
   requirement: !ruby/object:Gem::Requirement
@@ -103,14 +103,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.1'
+        version: '2.0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.1'
+        version: '2.0'
 - !ruby/object:Gem::Dependency
   name: rack
   requirement: !ruby/object:Gem::Requirement
@@ -295,15 +295,14 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
-      version: '0'
+      version: 3.0.0
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
   - - ">="
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubyforge_project:
-rubygems_version: 2.7.6.2
+rubygems_version: 3.5.22
 signing_key:
 specification_version: 4
 summary: A Gem for handling FHIR client requests in ruby