fhir-mongoid-models 0.0.1

data/app/models/cqm/measure.rb

@@ -0,0 +1,120 @@
+module CQM
+  # bonnie/measure.rb
+  class Measure
+    include Mongoid::Document
+    include Mongoid::Timestamps
+
+    IPP = 'IPP'.freeze
+    DENOM = 'DENOM'.freeze
+    NUMER = 'NUMER'.freeze
+    NUMEX = 'NUMEX'.freeze
+    DENEXCEP = 'DENEXCEP'.freeze
+    DENEX = 'DENEX'.freeze
+    MSRPOPL = 'MSRPOPL'.freeze
+    OBSERV = 'OBSERV'.freeze
+    MSRPOPLEX = 'MSRPOPLEX'.freeze
+
+    STRAT = 'STRAT'.freeze
+
+    ALL_POPULATION_CODES = [STRAT, IPP, DENOM, DENEX, NUMER, NUMEX, DENEXCEP, MSRPOPL, OBSERV, MSRPOPLEX].freeze
+
+    CQL_SKIP_STATEMENTS = ['SDE Ethnicity', 'SDE Payer', 'SDE Race', 'SDE Sex'].freeze
+
+    # A CMS-style string (e.g. "CMS2v4") for the measure
+    field :cms_id, type: String
+    field :title, type: String, default: ''
+    field :description, type: String, default: ''
+
+    # A version-specific UUID for the measure
+    field :set_id, type: String
+    field :calculation_method, type: String, default: 'PATIENT'
+    field :calculate_sdes, type: Boolean
+
+    embeds_one :fhir_measure, class_name: 'FHIR::Measure'
+    embeds_many :libraries, class_name: 'FHIR::Library'
+    embeds_many :value_sets, class_name: 'FHIR::ValueSet'
+    has_one :package, class_name: 'CQM::MeasurePackage', inverse_of: :measure, dependent: :destroy
+
+    # ELM/CQL Measure-logic related data
+    # Field name changed from 'cql' to 'cql_libraries' because the semantics of
+    # 'embeds_many :cqls' sounded weird
+    embeds_many :cql_libraries, class_name: 'CQM::LogicLibrary'
+    field :main_cql_library, type: String
+
+    embeds_many :source_data_criteria, class_name: 'CQM::DataElement'
+
+    embeds_many :population_sets, class_name: 'CQM::PopulationSet'
+
+    def as_json(*args)
+      result = Hash.new
+      unless self.id.nil?
+        result['id'] = self.id.to_s
+      end
+      unless self.cms_id.nil?
+        result['cms_id'] = self.cms_id
+      end
+      unless self.title.nil?
+        result['title'] = self.title
+      end
+      unless self.description.nil?
+        result['description'] = self.description
+      end
+      unless self.set_id.nil?
+        result['set_id'] = self.set_id
+      end
+      unless self.calculation_method.nil?
+        result['calculation_method'] = self.calculation_method
+      end
+      unless self.calculate_sdes.nil?
+        result['calculate_sdes'] = self.calculate_sdes
+      end
+      unless self.fhir_measure.nil?
+        result['fhir_measure'] = self.fhir_measure.as_json(*args)
+      end
+      unless self.libraries.nil?  || !self.libraries.any?
+        result['libraries'] = self.libraries.map{ |x| x.as_json(*args) }
+      end
+      unless self.value_sets.nil?  || !self.value_sets.any?
+        result['value_sets'] = self.value_sets.map{ |x| x.as_json(*args) }
+      end
+      unless self.cql_libraries.nil?  || !self.cql_libraries.any?
+        result['cql_libraries'] = self.cql_libraries.map{ |x| x.as_json(*args) }
+      end
+      unless self.main_cql_library.nil?
+        result['main_cql_library'] = self.main_cql_library
+      end
+      unless self.source_data_criteria.nil?  || !self.source_data_criteria.any?
+        result['source_data_criteria'] = self.source_data_criteria.map{ |x| x.as_json(*args) }
+      end
+      unless self.population_sets.nil?  || !self.population_sets.any?
+        result['population_sets'] = self.population_sets.map{ |x| x.as_json(*args) }
+      end
+      result['created_at'] = self.created_at unless self.created_at.nil?
+      result['updated_at'] = self.updated_at unless self.updated_at.nil?
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = Measure.new)
+      result = target
+      result['id'] = json_hash['id'] unless json_hash['id'].nil?
+      result['cms_id'] = json_hash['cms_id'] unless json_hash['cms_id'].nil?
+      result['title'] = json_hash['title'] unless json_hash['title'].nil?
+      result['description'] = json_hash['description'] unless json_hash['description'].nil?
+      result['set_id'] = json_hash['set_id'] unless json_hash['set_id'].nil?
+      result['calculation_method'] = json_hash['calculation_method'] unless json_hash['calculation_method'].nil?
+      result['calculate_sdes'] = json_hash['calculate_sdes'] unless json_hash['calculate_sdes'].nil?
+      result['fhir_measure'] = FHIR::Measure.transform_json(json_hash['fhir_measure']) unless json_hash['fhir_measure'].nil?
+      result['libraries'] = json_hash['libraries'].map { |var| FHIR::Library.transform_json(var) } unless json_hash['libraries'].nil?
+      result['value_sets'] = json_hash['value_sets'].map { |var| FHIR::ValueSet.transform_json(var) } unless json_hash['value_sets'].nil?
+      result['cql_libraries'] = json_hash['cql_libraries'].map { |var| CQM::LogicLibrary.transform_json(var) } unless json_hash['cql_libraries'].nil?
+      result['main_cql_library'] = json_hash['main_cql_library'] unless json_hash['main_cql_library'].nil?
+      result['source_data_criteria'] = json_hash['source_data_criteria'].map { |var| CQM::DataElement.transform_json(var) } unless json_hash['source_data_criteria'].nil?
+      result['population_sets'] = json_hash['population_sets'].map { |var| CQM::PopulationSet.transform_json(var) } unless json_hash['population_sets'].nil?
+      result['created_at'] = json_hash['created_at'] unless json_hash['created_at'].nil?
+      result['updated_at'] = json_hash['updated_at'] unless json_hash['updated_at'].nil?
+      result
+    end
+  end
+
+end

data/app/models/cqm/measure_package.rb

@@ -0,0 +1,10 @@
+module CQM
+  # MeasurePackage stores the uploaded file for a given Measure
+  class MeasurePackage
+    include Mongoid::Document
+    include Mongoid::Timestamps
+
+    field :file, type: BSON::Binary
+    belongs_to :measure, class_name: 'CQM::Measure', inverse_of: :package
+  end
+end

data/app/models/cqm/patient.rb

@@ -0,0 +1,54 @@
+module CQM
+  # bonnie/patient.rb
+  class Patient
+    include Mongoid::Document
+    include Mongoid::Timestamps
+
+    field :expected_values, type: Array
+    field :notes, type: String
+    field :measure_ids, type: Array
+
+    embeds_one :fhir_patient, class_name: 'FHIR::Patient', autobuild: true
+    embeds_many :data_elements, class_name: 'CQM::DataElement'
+
+    def as_json(*args)
+      result = Hash.new
+      unless self.id.nil?
+        result['id'] = self.id.to_s
+      end
+      unless self.expected_values.nil?
+        result['expected_values'] = self.expected_values
+      end
+      unless self.notes.nil?
+        result['notes'] = self.notes
+      end
+      unless self.measure_ids.nil?
+        result['measure_ids'] = self.measure_ids
+      end
+      unless self.fhir_patient.nil?
+        result['fhir_patient'] = self.fhir_patient.as_json(*args)
+      end
+      unless self.data_elements.nil?  || !self.data_elements.any?
+        result['data_elements'] = self.data_elements.map{ |x| x.as_json(*args) }
+      end
+      result['created_at'] = self.created_at unless self.created_at.nil?
+      result['updated_at'] = self.updated_at unless self.updated_at.nil?
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = Patient.new)
+      result = target
+      result['id'] = json_hash['id'] unless json_hash['id'].nil?
+      result['expected_values'] = json_hash['expected_values'] unless json_hash['expected_values'].nil?
+      result['notes'] = json_hash['notes'] unless json_hash['notes'].nil?
+      result['description'] = json_hash['description'] unless json_hash['description'].nil?
+      result['measure_ids'] = json_hash['measure_ids'] unless json_hash['measure_ids'].nil?
+      result['fhir_patient'] = FHIR::Patient.transform_json(json_hash['fhir_patient']) unless json_hash['fhir_patient'].nil?
+      result['data_elements'] = json_hash['data_elements'].map { |var| CQM::DataElement.transform_json(var) } unless json_hash['data_elements'].nil?
+      result['created_at'] = json_hash['created_at'] unless json_hash['created_at'].nil?
+      result['updated_at'] = json_hash['updated_at'] unless json_hash['updated_at'].nil?
+      result
+    end
+  end
+end

data/app/models/cqm/population_set.rb

@@ -0,0 +1,311 @@
+module CQM
+  # Representation of a population set (aka. PopulationCriteria)
+  class PopulationSet
+    include Mongoid::Document
+
+    embedded_in :measure
+
+    embeds_one :populations, class_name: 'CQM::PopulationMap'
+    embeds_many :stratifications
+    embeds_many :supplemental_data_elements, class_name: 'CQM::StatementReference'
+    embeds_many :observations
+
+    field :title, type: String
+    field :population_set_id, type: String
+
+    def as_json(*args)
+      result = Hash.new
+      unless self.populations.nil?
+        result['populations'] = self.populations.as_json(args)
+      end
+      unless self.stratifications.nil?  || !self.stratifications.any?
+        result['stratifications'] = self.stratifications.map{ |x| x.as_json(*args) }
+      end
+      unless self.supplemental_data_elements.nil?  || !self.supplemental_data_elements.any?
+        result['supplemental_data_elements'] = self.supplemental_data_elements.map{ |x| x.as_json(*args) }
+      end
+      unless self.observations.nil?  || !self.observations.any?
+        result['observations'] = self.observations.map{ |x| x.as_json(*args) }
+      end
+      unless self.title.nil?
+        result['title'] = self.title
+      end
+      unless self.population_set_id.nil?
+        result['population_set_id'] = self.population_set_id
+      end
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = PopulationSet.new)
+      result = target
+      result['populations'] = CQM::PopulationMap.transform_json(json_hash['populations']) unless json_hash['populations'].nil?
+      result['stratifications'] = json_hash['stratifications'].map { |var| CQM::Stratification.transform_json(var) } unless json_hash['stratifications'].nil?
+      result['supplemental_data_elements'] = json_hash['supplemental_data_elements'].map { |var| CQM::StatementReference.transform_json(var) } unless json_hash['supplemental_data_elements'].nil?
+      result['observations'] = json_hash['observations'].map { |var| CQM::Observation.transform_json(var) } unless json_hash['observations'].nil?
+      result['title'] = json_hash['title'] unless json_hash['title'].nil?
+      result['population_set_id'] = json_hash['population_set_id'] unless json_hash['population_set_id'].nil?
+
+      result
+    end
+  end
+
+  # Stratification info
+  class Stratification
+    include Mongoid::Document
+
+    embedded_in :population_set
+
+    field :title, type: String
+    field :stratification_id, type: String
+    field :set_id, type: String
+    embeds_one :statement, class_name: 'CQM::StatementReference'
+
+    def as_json(*args)
+      result = Hash.new
+      unless self.title.nil?
+        result['title'] = self.title
+      end
+      unless self.stratification_id.nil?
+        result['stratification_id'] = self.stratification_id
+      end
+      unless self.set_id.nil?
+        result['set_id'] = self.set_id
+      end
+      unless self.statement.nil?
+        result['statement'] = self.statement.as_json(args)
+      end
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = Stratification.new)
+      result = target
+      result['title'] = json_hash['title'] unless json_hash['title'].nil?
+      result['stratification_id'] = json_hash['stratification_id'] unless json_hash['stratification_id'].nil?
+      result['set_id'] = json_hash['set_id'] unless json_hash['set_id'].nil?
+      result['statement'] = CQM::StatementReference.transform_json(json_hash['statement']) unless json_hash['statement'].nil?
+
+      result
+    end
+  end
+
+  # Observation info
+  class Observation
+    include Mongoid::Document
+
+    embedded_in :population_set
+
+    embeds_one :observation_function, class_name: 'CQM::StatementReference'
+    embeds_one :observation_parameter, class_name: 'CQM::StatementReference'
+    field :aggregation_type, type: String
+    field :set_id, type: String
+
+    def as_json(*args)
+      result = Hash.new
+      unless self.observation_function.nil?
+        result['observation_function'] = self.observation_function.as_json(args)
+      end
+      unless self.observation_parameter.nil?
+        result['observation_parameter'] = self.observation_parameter.as_json(args)
+      end
+      unless self.aggregation_type.nil?
+        result['aggregation_type'] = self.aggregation_type
+      end
+      unless self.set_id.nil?
+        result['set_id'] = self.set_id
+      end
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = Observation.new)
+      result = target
+      result['observation_function'] = CQM::StatementReference.transform_json(json_hash['observation_function']) unless json_hash['observation_function'].nil?
+      result['observation_parameter'] = CQM::StatementReference.transform_json(json_hash['observation_parameter']) unless json_hash['observation_parameter'].nil?
+      result['aggregation_type'] = json_hash['aggregation_type'] unless json_hash['aggregation_type'].nil?
+      result['set_id'] = json_hash['set_id'] unless json_hash['set_id'].nil?
+
+      result
+    end
+  end
+
+  # Base class for the population maps
+  class PopulationMap
+    include Mongoid::Document
+
+    embedded_in :population_set
+    field :resource_type, type: String
+
+    def as_json(*args)
+      result = Hash.new
+      result['resource_type'] = 'PopulationMap'
+      result
+    end
+
+    def self.transform_json(json_hash, target = PopulationMap.new)
+      if 'PopulationMap' != json_hash['resource_type']
+        return Object.const_get('CQM::' + json_hash['resource_type']).transform_json(json_hash)
+      end
+      result = target
+      result['resource_type'] = 'PopulationMap'
+      result
+    end
+
+  end
+
+  # The population map for a porportion population set
+  class ProportionPopulationMap < PopulationMap
+    include Mongoid::Document
+
+    embeds_one :IPP, class_name: 'CQM::StatementReference'
+    embeds_one :DENOM, class_name: 'CQM::StatementReference'
+    embeds_one :NUMER, class_name: 'CQM::StatementReference'
+    embeds_one :NUMEX, class_name: 'CQM::StatementReference'
+    embeds_one :DENEX, class_name: 'CQM::StatementReference'
+    embeds_one :DENEXCEP, class_name: 'CQM::StatementReference'
+
+    def as_json(*args)
+      result = Hash.new
+      result['resource_type'] = 'ProportionPopulationMap'
+      unless self.IPP.nil?
+        result['IPP'] = self.IPP.as_json(args)
+      end
+      unless self.DENOM.nil?
+        result['DENOM'] = self.DENOM.as_json(args)
+      end
+      unless self.NUMER.nil?
+        result['NUMER'] = self.NUMER.as_json(args)
+      end
+      unless self.NUMEX.nil?
+        result['NUMEX'] = self.NUMEX.as_json(args)
+      end
+      unless self.DENEX.nil?
+        result['DENEX'] = self.DENEX.as_json(args)
+      end
+      unless self.DENEXCEP.nil?
+        result['DENEXCEP'] = self.DENEXCEP.as_json(args)
+      end
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = ProportionPopulationMap.new)
+      result = target
+      result['resource_type'] = 'ProportionPopulationMap'
+      result['IPP'] = CQM::StatementReference.transform_json(json_hash['IPP']) unless json_hash['IPP'].nil?
+      result['DENOM'] = CQM::StatementReference.transform_json(json_hash['DENOM']) unless json_hash['DENOM'].nil?
+      result['NUMER'] = CQM::StatementReference.transform_json(json_hash['NUMER']) unless json_hash['NUMER'].nil?
+      result['NUMEX'] = CQM::StatementReference.transform_json(json_hash['NUMEX']) unless json_hash['NUMEX'].nil?
+      result['DENEX'] = CQM::StatementReference.transform_json(json_hash['DENEX']) unless json_hash['DENEX'].nil?
+      result['DENEXCEP'] = CQM::StatementReference.transform_json(json_hash['DENEXCEP']) unless json_hash['DENEXCEP'].nil?
+
+      result
+    end
+  end
+
+  # The population map for a ratio population set
+  class RatioPopulationMap < PopulationMap
+    include Mongoid::Document
+
+    embeds_one :IPP, class_name: 'CQM::StatementReference'
+    embeds_one :DENOM, class_name: 'CQM::StatementReference'
+    embeds_one :NUMER, class_name: 'CQM::StatementReference'
+    embeds_one :NUMEX, class_name: 'CQM::StatementReference'
+    embeds_one :DENEX, class_name: 'CQM::StatementReference'
+
+    def as_json(*args)
+      result = Hash.new
+      result['resource_type'] = 'RatioPopulationMap'
+      unless self.IPP.nil?
+        result['IPP'] = self.IPP.as_json(args)
+      end
+      unless self.DENOM.nil?
+        result['DENOM'] = self.DENOM.as_json(args)
+      end
+      unless self.NUMER.nil?
+        result['NUMER'] = self.NUMER.as_json(args)
+      end
+      unless self.NUMEX.nil?
+        result['NUMEX'] = self.NUMEX.as_json(args)
+      end
+      unless self.DENEX.nil?
+        result['DENEX'] = self.DENEX.as_json(args)
+      end
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = RatioPopulationMap.new)
+      result = target
+      result['resource_type'] = 'RatioPopulationMap'
+      result['IPP'] = CQM::StatementReference.transform_json(json_hash['IPP']) unless json_hash['IPP'].nil?
+      result['DENOM'] = CQM::StatementReference.transform_json(json_hash['DENOM']) unless json_hash['DENOM'].nil?
+      result['NUMER'] = CQM::StatementReference.transform_json(json_hash['NUMER']) unless json_hash['NUMER'].nil?
+      result['NUMEX'] = CQM::StatementReference.transform_json(json_hash['NUMEX']) unless json_hash['NUMEX'].nil?
+      result['DENEX'] = CQM::StatementReference.transform_json(json_hash['DENEX']) unless json_hash['DENEX'].nil?
+
+      result
+    end
+  end
+
+  # The population map for a continuous variable population set
+  class ContinuousVariablePopulationMap < PopulationMap
+    include Mongoid::Document
+
+    embeds_one :IPP, class_name: 'CQM::StatementReference'
+    embeds_one :MSRPOPL, class_name: 'CQM::StatementReference'
+    embeds_one :MSRPOPLEX, class_name: 'CQM::StatementReference'
+
+    def as_json(*args)
+      result = Hash.new
+      result['resource_type'] = 'ContinuousVariablePopulationMap'
+      unless self.IPP.nil?
+        result['IPP'] = self.IPP.as_json(args)
+      end
+      unless self.MSRPOPL.nil?
+        result['MSRPOPL'] = self.MSRPOPL.as_json(args)
+      end
+      unless self.MSRPOPLEX.nil?
+        result['MSRPOPLEX'] = self.MSRPOPLEX.as_json(args)
+      end
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = ContinuousVariablePopulationMap.new)
+      result = target
+      result['resource_type'] = 'ContinuousVariablePopulationMap'
+      result['IPP'] = CQM::StatementReference.transform_json(json_hash['IPP']) unless json_hash['IPP'].nil?
+      result['MSRPOPL'] = CQM::StatementReference.transform_json(json_hash['MSRPOPL']) unless json_hash['MSRPOPL'].nil?
+      result['MSRPOPLEX'] = CQM::StatementReference.transform_json(json_hash['MSRPOPLEX']) unless json_hash['MSRPOPLEX'].nil?
+
+      result
+    end
+  end
+
+  # The population map for a cohort population set
+  class CohortPopulationMap < PopulationMap
+    include Mongoid::Document
+
+    embeds_one :IPP, class_name: 'CQM::StatementReference'
+
+    def as_json(*args)
+      result = Hash.new
+      result['resource_type'] = 'CohortPopulationMap'
+      unless self.IPP.nil?
+        result['IPP'] = self.IPP.as_json(args)
+      end
+
+      result
+    end
+
+    def self.transform_json(json_hash, target = CohortPopulationMap.new)
+      result = target
+      result['resource_type'] = 'CohortPopulationMap'
+      result['IPP'] = CQM::StatementReference.transform_json(json_hash['IPP']) unless json_hash['IPP'].nil?
+
+      result
+    end
+  end
+end