feldtruby 0.3.16 → 0.3.18

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. checksums.yaml +7 -0
  2. data/Gemfile.lock +9 -2
  3. data/Rakefile +8 -0
  4. data/feldtruby.gemspec +6 -0
  5. data/lib/feldtruby/annotations.rb +10 -0
  6. data/lib/feldtruby/array/basic_stats.rb +3 -1
  7. data/lib/feldtruby/array/permutations_and_subsets.rb +17 -0
  8. data/lib/feldtruby/float.rb +23 -0
  9. data/lib/feldtruby/logger.rb +216 -30
  10. data/lib/feldtruby/minitest_extensions.rb +0 -1
  11. data/lib/feldtruby/mongodb.rb +16 -0
  12. data/lib/feldtruby/mongodb_logger.rb +245 -0
  13. data/lib/feldtruby/optimize/differential_evolution.rb +29 -5
  14. data/lib/feldtruby/optimize/elite_archive.rb +91 -0
  15. data/lib/feldtruby/optimize/max_steps_termination_criterion.rb +1 -1
  16. data/lib/feldtruby/optimize/objective.rb +343 -222
  17. data/lib/feldtruby/optimize/optimizer.rb +138 -60
  18. data/lib/feldtruby/optimize/search_space.rb +10 -0
  19. data/lib/feldtruby/optimize.rb +1 -26
  20. data/lib/feldtruby/statistics.rb +74 -3
  21. data/lib/feldtruby/time.rb +19 -0
  22. data/lib/feldtruby/version.rb +1 -1
  23. data/old/event_logger.rb +682 -0
  24. data/spikes/comparing_samplers_on_classic_optimization_functions/analyze_sampler_comparison_results.R +78 -0
  25. data/spikes/comparing_samplers_on_classic_optimization_functions/compare_samplers.rb +264 -0
  26. data/spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_130405_175934.csv +561 -0
  27. data/spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_levi13_beale_easom_eggholder.csv +11201 -0
  28. data/spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_levi13_beale_easom_eggholder_all_radii_4_to_30.csv +44801 -0
  29. data/spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_omnitest.csv +1401 -0
  30. data/spikes/mongodb_logger.rb +47 -0
  31. data/spikes/simple_de_run.rb +32 -0
  32. data/test/helper.rb +17 -1
  33. data/test/test_array_basic_stats.rb +5 -1
  34. data/test/test_array_permutations_and_subsets.rb +23 -0
  35. data/test/test_float.rb +15 -0
  36. data/test/test_html_doc_getter.rb +1 -1
  37. data/test/test_logger.rb +86 -48
  38. data/test/test_mongodb_logger.rb +116 -0
  39. data/test/test_object_annotations.rb +14 -0
  40. data/test/test_optimize.rb +7 -6
  41. data/test/test_optimize_differential_evolution.rb +21 -19
  42. data/test/test_optimize_elite_archive.rb +85 -0
  43. data/test/test_optimize_objective.rb +237 -74
  44. data/test/test_optimize_populationbasedoptimizer.rb +72 -6
  45. data/test/test_optimize_random_search.rb +0 -17
  46. data/test/test_optimize_search_space.rb +15 -0
  47. data/test/test_statistics.rb +30 -4
  48. data/test/test_time.rb +22 -0
  49. data/test/tmp_shorter.csv +200 -0
  50. metadata +62 -21
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metadata CHANGED
@@ -1,62 +1,83 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: feldtruby
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.3.16
5
- prerelease:
4
+ version: 0.3.18
6
5
  platform: ruby
7
6
  authors:
8
7
  - Robert Feldt
9
8
  autorequire:
10
9
  bindir: bin
11
10
  cert_chain: []
12
- date: 2013-03-16 00:00:00.000000000 Z
11
+ date: 2013-04-05 00:00:00.000000000 Z
13
12
  dependencies:
14
13
  - !ruby/object:Gem::Dependency
15
14
  name: rinruby
16
15
  requirement: !ruby/object:Gem::Requirement
17
- none: false
18
16
  requirements:
19
- - - ! '>='
17
+ - - '>='
20
18
  - !ruby/object:Gem::Version
21
19
  version: '0'
22
20
  type: :runtime
23
21
  prerelease: false
24
22
  version_requirements: !ruby/object:Gem::Requirement
25
- none: false
26
23
  requirements:
27
- - - ! '>='
24
+ - - '>='
28
25
  - !ruby/object:Gem::Version
29
26
  version: '0'
30
27
  - !ruby/object:Gem::Dependency
31
28
  name: json
32
29
  requirement: !ruby/object:Gem::Requirement
33
- none: false
34
30
  requirements:
35
- - - ! '>='
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+ - - '>='
36
32
  - !ruby/object:Gem::Version
37
33
  version: '0'
38
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  - !ruby/object:Gem::Dependency
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  name: nokogiri
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  requirement: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
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  type: :runtime
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  prerelease: false
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  version_requirements: !ruby/object:Gem::Requirement
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- none: false
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  requirements:
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- - - ! '>='
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: mongo
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: bson_ext
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: '0'
62
83
  description: Robert Feldt's Common Ruby Code lib
@@ -76,6 +97,7 @@ files:
76
97
  - TODO
77
98
  - feldtruby.gemspec
78
99
  - lib/feldtruby.rb
100
+ - lib/feldtruby/annotations.rb
79
101
  - lib/feldtruby/array.rb
80
102
  - lib/feldtruby/array/basic_stats.rb
81
103
  - lib/feldtruby/array/count_by.rb
@@ -86,9 +108,12 @@ files:
86
108
  - lib/feldtruby/logger.rb
87
109
  - lib/feldtruby/math/rand.rb
88
110
  - lib/feldtruby/minitest_extensions.rb
111
+ - lib/feldtruby/mongodb.rb
112
+ - lib/feldtruby/mongodb_logger.rb
89
113
  - lib/feldtruby/net/html_doc_getter.rb
90
114
  - lib/feldtruby/optimize.rb
91
115
  - lib/feldtruby/optimize/differential_evolution.rb
116
+ - lib/feldtruby/optimize/elite_archive.rb
92
117
  - lib/feldtruby/optimize/max_steps_termination_criterion.rb
93
118
  - lib/feldtruby/optimize/objective.rb
94
119
  - lib/feldtruby/optimize/optimizer.rb
@@ -111,6 +136,15 @@ files:
111
136
  - lib/feldtruby/version.rb
112
137
  - lib/feldtruby/visualization/circos.rb
113
138
  - lib/feldtruby/word_counter.rb
139
+ - old/event_logger.rb
140
+ - spikes/comparing_samplers_on_classic_optimization_functions/analyze_sampler_comparison_results.R
141
+ - spikes/comparing_samplers_on_classic_optimization_functions/compare_samplers.rb
142
+ - spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_130405_175934.csv
143
+ - spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_levi13_beale_easom_eggholder.csv
144
+ - spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_levi13_beale_easom_eggholder_all_radii_4_to_30.csv
145
+ - spikes/comparing_samplers_on_classic_optimization_functions/results_comparing_samplers_omnitest.csv
146
+ - spikes/mongodb_logger.rb
147
+ - spikes/simple_de_run.rb
114
148
  - spikes/zlib_for_short_strings.rb
115
149
  - test/helper.rb
116
150
  - test/skip_test_array_archive.rb
@@ -124,9 +158,12 @@ files:
124
158
  - test/test_float.rb
125
159
  - test/test_html_doc_getter.rb
126
160
  - test/test_logger.rb
161
+ - test/test_mongodb_logger.rb
127
162
  - test/test_normalization.rb
163
+ - test/test_object_annotations.rb
128
164
  - test/test_optimize.rb
129
165
  - test/test_optimize_differential_evolution.rb
166
+ - test/test_optimize_elite_archive.rb
130
167
  - test/test_optimize_objective.rb
131
168
  - test/test_optimize_populationbasedoptimizer.rb
132
169
  - test/test_optimize_random_search.rb
@@ -139,29 +176,29 @@ files:
139
176
  - test/test_vector.rb
140
177
  - test/test_word_counter.rb
141
178
  - test/tmp.csv
179
+ - test/tmp_shorter.csv
142
180
  homepage: https://github.com/robertfeldt/feldtruby
143
181
  licenses: []
182
+ metadata: {}
144
183
  post_install_message:
145
184
  rdoc_options: []
146
185
  require_paths:
147
186
  - lib
148
187
  required_ruby_version: !ruby/object:Gem::Requirement
149
- none: false
150
188
  requirements:
151
- - - ! '>='
189
+ - - '>='
152
190
  - !ruby/object:Gem::Version
153
191
  version: '0'
154
192
  required_rubygems_version: !ruby/object:Gem::Requirement
155
- none: false
156
193
  requirements:
157
- - - ! '>='
194
+ - - '>='
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195
  - !ruby/object:Gem::Version
159
196
  version: '0'
160
197
  requirements: []
161
198
  rubyforge_project:
162
- rubygems_version: 1.8.25
199
+ rubygems_version: 2.0.0
163
200
  signing_key:
164
- specification_version: 3
201
+ specification_version: 4
165
202
  summary: Robert Feldt's Common Ruby Code lib
166
203
  test_files:
167
204
  - test/helper.rb
@@ -176,9 +213,12 @@ test_files:
176
213
  - test/test_float.rb
177
214
  - test/test_html_doc_getter.rb
178
215
  - test/test_logger.rb
216
+ - test/test_mongodb_logger.rb
179
217
  - test/test_normalization.rb
218
+ - test/test_object_annotations.rb
180
219
  - test/test_optimize.rb
181
220
  - test/test_optimize_differential_evolution.rb
221
+ - test/test_optimize_elite_archive.rb
182
222
  - test/test_optimize_objective.rb
183
223
  - test/test_optimize_populationbasedoptimizer.rb
184
224
  - test/test_optimize_random_search.rb
@@ -191,3 +231,4 @@ test_files:
191
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  - test/test_vector.rb
192
232
  - test/test_word_counter.rb
193
233
  - test/tmp.csv
234
+ - test/tmp_shorter.csv