RubyGems - feldtruby - Versions diffs - 0.3.10 → 0.3.11 - Mend

feldtruby 0.3.10 → 0.3.11

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (5) hide show

data/lib/feldtruby/statistics.rb +15 -11
data/lib/feldtruby/version.rb +1 -1
data/test/test_statistics.rb +33 -1
data/test/tmp.csv +799 -0
metadata +3 -1

data/lib/feldtruby/statistics.rb CHANGED Viewed

@@ -156,17 +156,21 @@ end
 # Plotting data sets in R with ggplot2 and save them to files.
 module FeldtRuby::Statistics::Plotting
-  def plot_2dims(csvFilePath, graphFilePath, xName, yName, title = "scatterplot", width = 1200, height = 900)
+  def plot_2dims(csvFilePath, graphFilePath, xName, yName, title = "scatterplot", format = "pdf", width = 7, height = 5)
     include_library("ggplot2")
+    gfxFile = File.dirname(graphFilePath) + "/" + File.basename(graphFilePath, "." + format) + "." + format
     pre = [
-      "td <- read.csv(#{csvFilePath.inspect}",
-      "png(#{graphFilePath.inspect}, width=#{width}, height=#{height})"
+      "data <- read.csv(#{csvFilePath.inspect})",
+      "#{format}(#{gfxFile.inspect}, width=#{width}, height=#{height})"
     ]
-    plot = yield()
-    plot.last << " theme_bw(base_size = 12, base_family = \"\")"
+    #plot = ["suppressWarnings( " + yield().join(" ") + " + theme_bw(base_size = 12, base_family = \"\") )"]
+    plot = [yield().join(" ") + " + theme_bw(base_size = 12, base_family = \"\")"]
+    #plot = yield()
+    #plot << " + theme_bw(base_size = 16, base_family = \"\")"
     post = [
       "dev.off()"
@@ -178,10 +182,10 @@ module FeldtRuby::Statistics::Plotting
   end
   # Scatter plot of columns xName vs yName in csvFilePath is saved to graphFilePath.
-  def scatter_plot(csvFilePath, graphFilePath, xName, yName, title = "scatterplot", smoothFit = true, width = 1200, height = 900)
-    plot_2dims(csvFilePath, graphFilePath, xName, yName, title, width, height) {
+  def scatter_plot(csvFilePath, graphFilePath, xName, yName, title = "scatterplot", smoothFit = true, format = "pdf", width = 7, height = 5)
+    plot_2dims(csvFilePath, graphFilePath, xName, yName, title, format, width, height) {
       [
-        "ggplot(td, aes(#{xName}, #{yName})) + ",
+        "ggplot(data, aes(#{xName}, #{yName})) + ",
         "  geom_point(shape = 1) + ", # Each point is non-filled circle
         (smoothFit ? "  geom_smooth() + " : nil),
         "  ggtitle(#{title.inspect})"
@@ -190,9 +194,9 @@ module FeldtRuby::Statistics::Plotting
   end
   # Scatter plot of columns xName vs yName in csvFilePath is saved to graphFilePath.
-  def hexbin_heatmap(csvFilePath, graphFilePath, xName, yName, title = "heatmap", bins = 30, width = 1200, height = 900)
-    plot_2dims(csvFilePath, graphFilePath, xName, yName, title, width, height) {
-      [ "ggplot(td, aes(#{xName}, #{yName})) + geom_hex( bins = #{bins} ) + ggtitle(\"#{title}\")"]
+  def hexbin_heatmap(csvFilePath, graphFilePath, xName, yName, title = "heatmap", bins = 30, format = "pdf", width = 7, height = 5)
+    plot_2dims(csvFilePath, graphFilePath, xName, yName, title, format, width, height) {
+      [ "ggplot(data, aes(#{xName}, #{yName})) + geom_hex( bins = #{bins} ) + ggtitle(\"#{title}\")"]
     }
   end
 end

data/lib/feldtruby/version.rb CHANGED Viewed

@@ -1,3 +1,3 @@
 module FeldtRuby
-  VERSION = "0.3.10"
+  VERSION = "0.3.11"
 end

data/test/test_statistics.rb CHANGED Viewed

@@ -89,11 +89,43 @@ require 'feldtruby/minitest_extensions'
 describe "Test Statistics but with the extensions to MiniTest framework" do
   it "can use assert_same_proportions" do
     assert_similar_proportions( [1]*10 + [2]*10 )
-    # This should fail but I found now way to test it since it uses the MiniTest framework itself...
+    # This should fail but I found no way to test it since it uses the MiniTest framework itself...
     # assert_similar_proportions( [1]*60 + [2]*40 )
   end
   it "can use must_have_similar_proportions" do
     ([1]*10 + [2]*10).must_have_similar_proportions
   end
+end
+describe "Plotting" do
+  it "can do a scatter plot" do
+    d = File.dirname(__FILE__) + "/"
+    filename = d + "tmp.csv"
+    out = d + "scatterplot.pdf"
+    RC.scatter_plot(filename, out, "size", "height",
+      "Scatterplot", true)
+    File.exist?(out).must_equal true
+    File.delete out
+  end
+  it "can do a hexbin heatmap plot" do
+    d = File.dirname(__FILE__) + "/"
+    filename = d + "tmp.csv"
+    out = d + "heatmap.pdf"
+    RC.hexbin_heatmap(filename, out, "size", "height",
+      "Hexbin heatmap", 30)
+    File.exist?(out).must_equal true
+    File.delete out
+  end
 end

data/test/tmp.csv ADDED Viewed

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metadata CHANGED Viewed

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: feldtruby
 version: !ruby/object:Gem::Version
-  version: 0.3.10
+  version: 0.3.11
   prerelease:
 platform: ruby
 authors:
@@ -118,6 +118,7 @@ files:
 - test/test_time.rb
 - test/test_vector.rb
 - test/test_word_counter.rb
+- test/tmp.csv
 homepage: https://github.com/robertfeldt/feldtruby
 licenses: []
 post_install_message:
@@ -167,3 +168,4 @@ test_files:
 - test/test_time.rb
 - test/test_vector.rb
 - test/test_word_counter.rb
+- test/tmp.csv